AlfalfaGEDB | Msa0450790

M. sativa cultivar zhongmu-4 / Msa0450790

KEGG: K04733|K13420
GO: -
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450790	XP_039687384.1	95.393	521	24	0	1	521	254	774	0.0	988

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450790	sp\|C0LGP4\|Y3475_ARATH	39.383	551	300	10	2	522	457	1003	2.84e-120	380
Msa0450790	sp\|C0LGP4\|Y3475_ARATH	38.849	139	84	1	2	139	336	474	7.51e-16	84.7
Msa0450790	sp\|C0LGP4\|Y3475_ARATH	35.664	143	91	1	1	142	113	255	1.82e-15	83.6
Msa0450790	sp\|C0LGP4\|Y3475_ARATH	35.036	137	89	0	3	139	386	522	1.29e-13	77.4
Msa0450790	sp\|C0LGP4\|Y3475_ARATH	33.835	133	88	0	7	139	71	203	3.90e-11	69.7

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450790	A0A396IMI5	32.857	140	93	1	1	139	124	263	2.23e-13	85.1
Msa0450790	A0A396IMI5	95.393	521	24	0	1	521	469	989	0.0	985

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0404830	Msa0450790	0.807758	4.322257e-50	-8.615850e-47
Msa0450790	Msa0498100	0.874890	4.738980e-68	-8.615850e-47
Msa0450790	Msa0901400	0.802821	4.677895e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450790	MtrunA17_Chr3g0095201	95.393	521	24	0	1	521	469	989	0.0	985
Msa0450790	MtrunA17_Chr3g0095201	32.857	140	93	1	1	139	124	263	4.29e-17	85.1
Msa0450790	MtrunA17_Chr3g0095201	34.752	141	91	1	1	140	173	313	7.58e-14	74.7
Msa0450790	MtrunA17_Chr3g0095201	34.337	166	82	4	1	139	1	166	2.89e-13	72.8
Msa0450790	MtrunA17_Chr3g0095201	30.065	153	102	2	17	168	116	264	1.79e-12	70.1
Msa0450790	MtrunA17_Chr3g0095201	34.307	137	90	0	3	139	375	511	2.18e-12	70.1
Msa0450790	MtrunA17_Chr2g0284121	79.541	523	106	1	1	522	693	1215	0.0	848
Msa0450790	MtrunA17_Chr2g0284121	36.879	141	89	0	1	141	106	246	7.83e-16	80.9
Msa0450790	MtrunA17_Chr2g0284121	35.156	128	83	0	11	138	140	267	5.28e-15	78.6
Msa0450790	MtrunA17_Chr2g0284121	35.000	140	90	1	1	139	154	293	5.71e-15	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0450790	AT3G47570.1	39.383	551	300	10	2	522	457	1003	2.88e-121	380
Msa0450790	AT3G47570.1	38.849	139	84	1	2	139	336	474	7.63e-17	84.7
Msa0450790	AT3G47570.1	35.664	143	91	1	1	142	113	255	1.85e-16	83.6
Msa0450790	AT3G47570.1	35.036	137	89	0	3	139	386	522	1.31e-14	77.4
Msa0450790	AT3G47570.1	33.835	133	88	0	7	139	71	203	3.97e-12	69.7
Msa0450790	AT3G47570.1	29.560	159	110	2	1	158	161	318	1.11e-11	68.2
Msa0450790	AT3G47570.1	30.128	156	108	1	2	156	361	516	8.06e-11	65.5
Msa0450790	AT3G47090.1	37.341	549	312	9	2	522	458	1002	1.15e-115	365
Msa0450790	AT3G47090.1	35.762	151	92	3	1	146	158	308	4.72e-15	79.0
Msa0450790	AT3G47090.1	32.075	159	107	1	4	161	116	274	1.74e-12	70.9

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Find 94 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATGGCCAGCACAATTAT+AGG	0.334440	3_3:+36959672	None:intergenic
AAAGGAGATGTGTACAGCTA+TGG	0.526863	3_3:-36958736	Msa0450790:CDS
AAAGGAGGAAGGTATCTCTG+AGG	0.722147	3_3:+36960193	None:intergenic
AAATAAAGATTTCAAATCAT+TGG	0.325632	3_3:-36959322	Msa0450790:CDS
AACATTTCACCAATTGAAGT+TGG	0.399625	3_3:+36959966	None:intergenic
AACCTTAGAAATTCTCTCCT+TGG	0.393945	3_3:-36960015	Msa0450790:CDS
AAGATAAGAAAGTGACACTA+AGG	0.525676	3_3:+36959887	None:intergenic
AAGATTTCCAGTTAAATCAT+TGG	0.401240	3_3:+36960133	None:intergenic
AAGGGAGTGATTTCTATTAA+AGG	0.277781	3_3:-36958754	Msa0450790:CDS
AAGTTGAAAATCCACTTGAA+AGG	0.530839	3_3:-36959608	Msa0450790:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TCTCTTAGAAAGTTGTACAT+AGG	-	chr3_3:36958453-36958472	Msa0450790:CDS	30.0%
AGTTGTACATAGGATCTAAT+AGG	-	chr3_3:36958463-36958482	Msa0450790:CDS	30.0%
TTATCCTCCAATGATTTAAC+TGG	-	chr3_3:36958543-36958562	Msa0450790:CDS	30.0%
ATTTCCAGTTAAATCATTGG+AGG	+	chr3_3:36958550-36958569	None:intergenic	30.0%
CTCAAATTCTTAATCTCAAG+TGG	+	chr3_3:36958576-36958595	None:intergenic	30.0%
ACATTTCACCAATTGAAGTT+GGG	+	chr3_3:36958719-36958738	None:intergenic	30.0%
AACATTTCACCAATTGAAGT+TGG	+	chr3_3:36958720-36958739	None:intergenic	30.0%
AATGTTAAGCCTCAATTTCT+TGG	-	chr3_3:36958734-36958753	Msa0450790:CDS	30.0%
AAGATAAGAAAGTGACACTA+AGG	+	chr3_3:36958799-36958818	None:intergenic	30.0%
TTGTCATACAATAGATTGCA+AGG	-	chr3_3:36958831-36958850	Msa0450790:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	36958447	36960258	36958447	ID=Msa0450790;Name=Msa0450790
chr3_3	mRNA	36958447	36960258	36958447	ID=Msa0450790-mRNA-1;Parent=Msa0450790;Name=Msa0450790-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0\|1\|0\|1\|1\|1\|2\|0\|522
chr3_3	exon	36959031	36960258	36959031	ID=Msa0450790-mRNA-1:exon:6713;Parent=Msa0450790-mRNA-1
chr3_3	exon	36958447	36958787	36958447	ID=Msa0450790-mRNA-1:exon:6712;Parent=Msa0450790-mRNA-1
chr3_3	CDS	36959031	36960258	36959031	ID=Msa0450790-mRNA-1:cds;Parent=Msa0450790-mRNA-1
chr3_3	CDS	36958447	36958787	36958447	ID=Msa0450790-mRNA-1:cds;Parent=Msa0450790-mRNA-1

Gene Sequence

>Msa0450790

ATGAGTTCTCTTAGAAAGTTGTACATAGGATCTAATAGGTTAACCTCAGAGATACCTTCCTCCTTTTGGAATCTCAAAGATATTTTAGAGGTAAACTTATCCTCCAATGATTTAACTGGAAATCTTCCACTTGAGATTAAGAATTTGAGAGCTATTGTACTATTAGATTTATCAAGAAATCAATTTTCAAGCAATATTCCTACAACCTTCAGTTTCTTGAAAACCTTAGAAATTCTCTCCTTGGAATCTAACAAATTGAAAGGGACTATCCCAACTTCAATTGGTGAAATGTTAAGCCTCAATTTCTTGGACTTGTCTCAAAATCTTATAACTGGTGTGATTCCAGAATCCTTAGTGTCACTTTCTTATCTTAAGTACATGAATTTGTCATACAATAGATTGCAAGGAGAGATTCCTGATGGAGGACCTTTCAAAAACTTTACAGCTCAATCTTTCATGCATAATGAAGCACTTTGTGGAAGTGCTAGATTACAAGTGCCTCCATGTGATAAACAAAGTAGGAAAAAGCCAATGAAAAAGATGTTATTAATCAAAATCTCATTGCCTATAATTGTGCTGGCCATTTTGGTTGTTCTATGCACAATTCTTCGAATGCGTAAAAAGAAAAAAGTTGAAAATCCACTTGAAAGGGGTTTATCAACTGAATTAGGGGTTCCAAGAAGGATTTCATATCATGAACTTGTTCAAGCAACTAATGGATTTAGTGAGAGCAACTTACTTGGAAAGGGGGGCTTTGGCTCTGTGTATCAGGGAATGCTTTCTACCGGGAAGATGGTAGCAATTAAAGTACTTGACTTAAATTTGGAAGCAACATCAAAAAGTTTCGACGCAGAATGTAATGCAATGCGCATTCTTCGACATCGAAATCTTGTTGAGGTTATTACAAGTTGTTCAAATAAAGATTTCAAATCATTGGTGATGGAGTTTATGTCAAATGGCAGTGTGGAAAAATGGTTATACTCGGATAACTATTGTTTAGATTTCTTGCAAAGGTTGAATATAATGATAGATGTTGCATCTGCATTGGAGTATCTCCATCATGGTTCTTCAATACCAGTGGTTCATTGTGATTTGAAGCCTAGTAATGTGTTACTAGATGAAAATATGGTTGCACATGTTAGTGATTTTGGAATTTCCAAGCTCTTGGATGAAGGACATTCTAAAATCCACACTGAGACTTTAGCTACTCTTGGCTATGTTGCACCAGAGTATGGATCTAAGGGAGTGATTTCTATTAAAGGAGATGTGTACAGCTATGGAATAATGCTAATGGAAATCTTCACAGGAAAGAAGCCAACAAATGAAATGTTTGTACAAGAATTAACCTTAAAAACATGGATTAGTGAGTCAATGCCTAATTCAGTTATGGAAGTTGTGGATTACAATTTAGTCTCACAACATGGGAATGAAACTGATGAAATTGTATCACATGTATCATCTATTTTGGATTTAGCATTGAGATGTTGTGCAGATTCACCAGAAGCAAGGATTAGTATGACAGATGTAACTGCATCACTAATCAAGATTAAGATCTTATTCATCCGGTGA

Protein sequence

>Msa0450790

MSSLRKLYIGSNRLTSEIPSSFWNLKDILEVNLSSNDLTGNLPLEIKNLRAIVLLDLSRNQFSSNIPTTFSFLKTLEILSLESNKLKGTIPTSIGEMLSLNFLDLSQNLITGVIPESLVSLSYLKYMNLSYNRLQGEIPDGGPFKNFTAQSFMHNEALCGSARLQVPPCDKQSRKKPMKKMLLIKISLPIIVLAILVVLCTILRMRKKKKVENPLERGLSTELGVPRRISYHELVQATNGFSESNLLGKGGFGSVYQGMLSTGKMVAIKVLDLNLEATSKSFDAECNAMRILRHRNLVEVITSCSNKDFKSLVMEFMSNGSVEKWLYSDNYCLDFLQRLNIMIDVASALEYLHHGSSIPVVHCDLKPSNVLLDENMVAHVSDFGISKLLDEGHSKIHTETLATLGYVAPEYGSKGVISIKGDVYSYGIMLMEIFTGKKPTNEMFVQELTLKTWISESMPNSVMEVVDYNLVSQHGNETDEIVSHVSSILDLALRCCADSPEARISMTDVTASLIKIKILFIR*