Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452000 | XP_014621014.1 | 87.912 | 91 | 11 | 0 | 19 | 109 | 170 | 260 | 6.18e-43 | 165 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452000 | sp|Q9ZR72|AB1B_ARATH | 66.957 | 115 | 14 | 1 | 19 | 109 | 118 | 232 | 4.70e-40 | 149 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452000 | A0A7J7GM29 | 67.857 | 112 | 12 | 1 | 23 | 110 | 1 | 112 | 1.20e-41 | 146 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0273570 | Msa0452000 | 0.806761 | 7.030815e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452000 | MtrunA17_Chr7g0264631 | 73.913 | 115 | 6 | 1 | 19 | 109 | 176 | 290 | 6.63e-45 | 159 |
| Msa0452000 | MtrunA17_Chr1g0180601 | 67.826 | 115 | 13 | 1 | 19 | 109 | 149 | 263 | 4.96e-41 | 148 |
| Msa0452000 | MtrunA17_Chr6g0453051 | 41.441 | 111 | 41 | 1 | 23 | 109 | 117 | 227 | 3.35e-21 | 91.7 |
| Msa0452000 | MtrunA17_Chr5g0410921 | 36.207 | 116 | 50 | 1 | 19 | 110 | 106 | 221 | 1.20e-17 | 81.3 |
| Msa0452000 | MtrunA17_Chr8g0366451 | 35.398 | 113 | 49 | 1 | 22 | 110 | 68 | 180 | 1.57e-17 | 80.5 |
| Msa0452000 | MtrunA17_Chr2g0285191 | 36.290 | 124 | 54 | 2 | 19 | 118 | 148 | 270 | 2.21e-16 | 77.4 |
| Msa0452000 | MtrunA17_Chr1g0156821 | 33.036 | 112 | 51 | 1 | 23 | 110 | 127 | 238 | 1.65e-14 | 72.0 |
| Msa0452000 | MtrunA17_Chr1g0212701 | 34.783 | 115 | 51 | 1 | 23 | 113 | 156 | 270 | 9.27e-14 | 69.7 |
| Msa0452000 | MtrunA17_Chr7g0222781 | 34.234 | 111 | 49 | 1 | 23 | 109 | 162 | 272 | 1.10e-13 | 69.7 |
| Msa0452000 | MtrunA17_Chr2g0285311 | 33.065 | 124 | 58 | 2 | 19 | 118 | 119 | 241 | 3.51e-13 | 68.2 |
| Msa0452000 | MtrunA17_Chr4g0069351 | 31.452 | 124 | 60 | 2 | 19 | 118 | 128 | 250 | 6.30e-13 | 67.4 |
| Msa0452000 | MtrunA17_Chr6g0481921 | 34.783 | 115 | 51 | 1 | 19 | 109 | 21 | 135 | 1.39e-12 | 66.2 |
| Msa0452000 | MtrunA17_Chr4g0069361 | 30.645 | 124 | 61 | 2 | 19 | 118 | 128 | 250 | 3.61e-12 | 65.1 |
| Msa0452000 | MtrunA17_Chr4g0039821 | 30.645 | 124 | 61 | 2 | 19 | 118 | 126 | 248 | 8.90e-12 | 63.9 |
| Msa0452000 | MtrunA17_Chr2g0285301 | 33.333 | 129 | 56 | 2 | 19 | 118 | 109 | 236 | 1.10e-11 | 63.5 |
| Msa0452000 | MtrunA17_Chr8g0344651 | 26.207 | 145 | 80 | 3 | 20 | 140 | 349 | 490 | 1.34e-11 | 63.5 |
| Msa0452000 | MtrunA17_Chr4g0069401 | 29.839 | 124 | 62 | 2 | 19 | 118 | 123 | 245 | 1.58e-11 | 63.2 |
| Msa0452000 | MtrunA17_Chr1g0194031 | 29.032 | 124 | 63 | 2 | 19 | 118 | 134 | 256 | 3.20e-11 | 62.4 |
| Msa0452000 | MtrunA17_Chr1g0193991 | 28.226 | 124 | 64 | 2 | 19 | 118 | 139 | 261 | 7.81e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452000 | AT2G36910.1 | 66.957 | 115 | 14 | 1 | 19 | 109 | 118 | 232 | 4.77e-41 | 149 |
| Msa0452000 | AT3G28860.1 | 40.541 | 111 | 42 | 1 | 23 | 109 | 119 | 229 | 9.47e-21 | 90.5 |
| Msa0452000 | AT4G25960.1 | 36.207 | 116 | 50 | 1 | 19 | 110 | 151 | 266 | 2.99e-18 | 83.2 |
| Msa0452000 | AT1G28010.1 | 32.759 | 116 | 54 | 1 | 19 | 110 | 122 | 237 | 1.13e-16 | 78.6 |
| Msa0452000 | AT1G27940.1 | 32.759 | 116 | 54 | 2 | 19 | 110 | 121 | 236 | 4.49e-16 | 77.0 |
| Msa0452000 | AT1G10680.2 | 32.759 | 116 | 54 | 1 | 19 | 110 | 115 | 230 | 3.70e-15 | 74.3 |
| Msa0452000 | AT1G10680.1 | 32.759 | 116 | 54 | 1 | 19 | 110 | 115 | 230 | 3.75e-15 | 74.3 |
| Msa0452000 | AT3G55320.1 | 35.135 | 111 | 48 | 1 | 23 | 109 | 170 | 280 | 1.15e-14 | 72.8 |
| Msa0452000 | AT2G39480.1 | 33.621 | 116 | 53 | 1 | 23 | 114 | 168 | 283 | 1.36e-14 | 72.8 |
| Msa0452000 | AT2G39480.2 | 39.474 | 76 | 46 | 0 | 39 | 114 | 28 | 103 | 2.92e-12 | 65.9 |
| Msa0452000 | AT4G01820.2 | 31.304 | 115 | 55 | 1 | 19 | 109 | 98 | 212 | 7.51e-11 | 61.6 |
| Msa0452000 | AT4G01820.1 | 31.304 | 115 | 55 | 1 | 19 | 109 | 98 | 212 | 9.22e-11 | 61.2 |
Find 63 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGGATTTGCAGCAGGTTTC+TGG | -0.003578 | 3_3:-40571844 | None:intergenic |
| TGGAAATTGTTAAATATATT+TGG | 0.094466 | 3_3:-40568294 | None:intergenic |
| AGAGGAGCTCCGCATAATTT+TGG | 0.204687 | 3_3:+40571959 | Msa0452000:CDS |
| CAGCTTGAGAAAGAGCTTCT+TGG | 0.252336 | 3_3:-40569136 | None:intergenic |
| CTTTGTTTCTTATTAGAAAA+TGG | 0.268683 | 3_3:-40571808 | None:intergenic |
| CGCTGTTTGGCAATTGGCTT+TGG | 0.291487 | 3_3:+40569034 | Msa0452000:CDS |
| CAATTGGTCTAAGCTATAAA+TGG | 0.292358 | 3_3:+40568648 | Msa0452000:exon |
| TTTCAAAACAAAATCTTATT+CGG | 0.297578 | 3_3:+40568386 | Msa0452000:five_prime_UTR |
| TTTAATGCATCAAGCTTCAT+TGG | 0.302889 | 3_3:-40571986 | None:intergenic |
| GTTCGTATGATAGCTGTAAT+TGG | 0.339964 | 3_3:+40569071 | Msa0452000:CDS |
| CAAAAGCCTCTAAAATAAAC+TGG | 0.340732 | 3_3:-40568319 | None:intergenic |
| ATTACAATACTTACTCTGTT+AGG | 0.351044 | 3_3:+40568536 | Msa0452000:five_prime_UTR |
| ATTCACCGCTGTTTGGCAAT+TGG | 0.357814 | 3_3:+40569028 | Msa0452000:CDS |
| ATCAAAGAATCAATGTATCT+AGG | 0.363285 | 3_3:-40571875 | None:intergenic |
| TGGATTTGCAGCAGGTTTCT+GGG | 0.365964 | 3_3:-40571843 | None:intergenic |
| GATATTGATATAATTTGCTT+TGG | 0.365999 | 3_3:+40569706 | Msa0452000:CDS |
| ATATTTGGATAGTCTCTAAA+AGG | 0.368992 | 3_3:-40568279 | None:intergenic |
| CAAGATGAGGATCAAGTATC+TGG | 0.373544 | 3_3:+40568729 | Msa0452000:CDS |
| AGCTGGCAATATTGTGGAAC+AGG | 0.387669 | 3_3:+40569154 | Msa0452000:CDS |
| AATGCAAATCAAATTTCATA+TGG | 0.420166 | 3_3:+40568343 | Msa0452000:five_prime_UTR |
| AATGGAGGCATGCATGCTTT+CGG | 0.421454 | 3_3:-40571790 | None:intergenic |
| GCCTCTAAAATAAACTGGAT+TGG | 0.433281 | 3_3:-40568314 | None:intergenic |
| AAATATGAAGCAAATGCAAT+TGG | 0.447901 | 3_3:+40568632 | Msa0452000:five_prime_UTR |
| ATTTATGCATGTGACAGATA+TGG | 0.464811 | 3_3:-40568594 | None:intergenic |
| TCATCTTCATTCTGTGTAGA+TGG | 0.471699 | 3_3:+40571905 | Msa0452000:CDS |
| TCAAAGAATCAATGTATCTA+GGG | 0.474603 | 3_3:-40571874 | None:intergenic |
| GGATTGGTACAATTATTAAG+AGG | 0.479712 | 3_3:+40571941 | Msa0452000:CDS |
| ATGGGAGTTGGATTTGCAGC+AGG | 0.480408 | 3_3:-40571851 | None:intergenic |
| TGTATACGAGAAAAGGTGTC+AGG | 0.481631 | 3_3:+40569741 | Msa0452000:CDS |
| GGTGAATAAATCTGCAACTT+GGG | 0.485972 | 3_3:+40568155 | Msa0452000:five_prime_UTR |
| TTAGTTTACAGTGATGATAC+AGG | 0.489004 | 3_3:-40568253 | None:intergenic |
| TTGTTGGATTCACCGCTGTT+TGG | 0.497430 | 3_3:+40569021 | Msa0452000:CDS |
| TTCTCAAGCTGGCAATATTG+TGG | 0.505443 | 3_3:+40569148 | Msa0452000:CDS |
| CAGAGATTTCATGCTGGATG+TGG | 0.506422 | 3_3:+40568694 | Msa0452000:CDS |
| TGGAAATTTCATTCACTACA+TGG | 0.508293 | 3_3:+40568977 | Msa0452000:CDS |
| TCATTCTGTGTAGATGGCGT+TGG | 0.510792 | 3_3:+40571911 | Msa0452000:CDS |
| CAAGAAGCTCTTTCTCAAGC+TGG | 0.512019 | 3_3:+40569137 | Msa0452000:CDS |
| TGGTGAATAAATCTGCAACT+TGG | 0.513926 | 3_3:+40568154 | Msa0452000:five_prime_UTR |
| GGATTTGCAGCAGGTTTCTG+GGG | 0.524214 | 3_3:-40571842 | None:intergenic |
| TGGCACTGTTAATCAAATCA+TGG | 0.525756 | 3_3:-40568569 | None:intergenic |
| AGAATCAATGTATCTAGGGA+TGG | 0.546491 | 3_3:-40571870 | None:intergenic |
| CTTTCGGTTTGTTGATAGAG+TGG | 0.550163 | 3_3:-40571774 | None:intergenic |
| TTTCTCGTATACAAAAGGGT+TGG | 0.555441 | 3_3:-40569731 | None:intergenic |
| GAATCAATGTATCTAGGGAT+GGG | 0.558971 | 3_3:-40571869 | None:intergenic |
| GATTTGCAGCAGGTTTCTGG+GGG | 0.570767 | 3_3:-40571841 | None:intergenic |
| ATTTCATGCTGGATGTGGAC+TGG | 0.573839 | 3_3:+40568699 | Msa0452000:CDS |
| ATGTATCTAGGGATGGGAGT+TGG | 0.579003 | 3_3:-40571863 | None:intergenic |
| GACTGGAGAGCGACAAGATG+AGG | 0.584763 | 3_3:+40568716 | Msa0452000:CDS |
| TTTCGGTTTGTTGATAGAGT+GGG | 0.585715 | 3_3:-40571773 | None:intergenic |
| AAGAGCGTGTGAAAAGGTTG+AGG | 0.586999 | 3_3:+40568120 | None:intergenic |
| CGTATGATAGCTGTAATTGG+AGG | 0.608627 | 3_3:+40569074 | Msa0452000:CDS |
| AAAATACAGAGATTTCATGC+TGG | 0.610362 | 3_3:+40568688 | Msa0452000:CDS |
| CTATCATACGAACTATAGCA+AGG | 0.613563 | 3_3:-40569061 | None:intergenic |
| ATTGGAAATCCAAAATTATG+CGG | 0.613640 | 3_3:-40571968 | None:intergenic |
| AGGTTGAGGTAATAAAGCCT+TGG | 0.616635 | 3_3:+40568134 | Msa0452000:five_prime_UTR |
| TGTTTCTTATTAGAAAATGG+AGG | 0.620884 | 3_3:-40571805 | None:intergenic |
| AGAGAGCTTAGCAAAAGTAG+TGG | 0.623325 | 3_3:-40569105 | None:intergenic |
| TATCATACGAACTATAGCAA+GGG | 0.641212 | 3_3:-40569060 | None:intergenic |
| AGTTGCAGATTTATTCACCA+AGG | 0.648552 | 3_3:-40568151 | None:intergenic |
| AGAGCAGTATAATTAAGATG+AGG | 0.669217 | 3_3:-40568502 | None:intergenic |
| CAAAGCCAATTGCCAAACAG+CGG | 0.695988 | 3_3:-40569033 | None:intergenic |
| CATTGAATTCTTTAACACCG+AGG | 0.701007 | 3_3:+40568771 | Msa0452000:CDS |
| TGCATGTGACAGATATGGCA+TGG | 0.701041 | 3_3:-40568589 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTTTTTTAGTTATATAA+TGG | - | chr3_3:40569269-40569288 | None:intergenic | 10.0% |
| !!! | AATTCTTAATATAGTTTTAT+TGG | + | chr3_3:40571241-40571260 | Msa0452000:intron | 10.0% |
| !!! | TATATATTAGATTATTTTGA+TGG | - | chr3_3:40571318-40571337 | None:intergenic | 10.0% |
| !! | TGGAAATTGTTAAATATATT+TGG | - | chr3_3:40568297-40568316 | None:intergenic | 15.0% |
| !! | TTTCAAAACAAAATCTTATT+CGG | + | chr3_3:40568386-40568405 | Msa0452000:five_prime_UTR | 15.0% |
| !!! | CAAATTCAAATTGATTTAAA+TGG | - | chr3_3:40570447-40570466 | None:intergenic | 15.0% |
| !!! | TTGAATTTGTTTAAAATTTG+CGG | + | chr3_3:40570458-40570477 | Msa0452000:intron | 15.0% |
| !!! | ATTTTCTGAAAGTTATAAAA+AGG | - | chr3_3:40571224-40571243 | None:intergenic | 15.0% |
| !! | TAACATAAAAATTAATGACA+TGG | + | chr3_3:40571410-40571429 | Msa0452000:intron | 15.0% |
| !! | AATGCAAATCAAATTTCATA+TGG | + | chr3_3:40568343-40568362 | Msa0452000:five_prime_UTR | 20.0% |
| !!! | TCATTTTTTCAACTATTCTT+GGG | - | chr3_3:40568454-40568473 | None:intergenic | 20.0% |
| !! | TCTGATTAATTATATGCAAT+TGG | + | chr3_3:40569617-40569636 | Msa0452000:intron | 20.0% |
| !!! | GATATTGATATAATTTGCTT+TGG | + | chr3_3:40569706-40569725 | Msa0452000:CDS | 20.0% |
| !!! | TCTTGTAACATTTTTAATAC+CGG | + | chr3_3:40570345-40570364 | Msa0452000:intron | 20.0% |
| !! | TTAAATGAATGTAGTGATTT+AGG | - | chr3_3:40571393-40571412 | None:intergenic | 20.0% |
| !! | AAAGATTGAAACAAATGAAA+TGG | + | chr3_3:40571598-40571617 | Msa0452000:intron | 20.0% |
| !! | GATTAATAAAACTATGAAGT+AGG | + | chr3_3:40571669-40571688 | Msa0452000:intron | 20.0% |
| !!! | CTTTGTTTCTTATTAGAAAA+TGG | - | chr3_3:40571811-40571830 | None:intergenic | 20.0% |
| ! | ATATTTGGATAGTCTCTAAA+AGG | - | chr3_3:40568282-40568301 | None:intergenic | 25.0% |
| !!! | CTCATTTTTTCAACTATTCT+TGG | - | chr3_3:40568455-40568474 | None:intergenic | 25.0% |
| ! | ATTACAATACTTACTCTGTT+AGG | + | chr3_3:40568536-40568555 | Msa0452000:five_prime_UTR | 25.0% |
| !! | CATTTGCTTCATATTTTATC+AGG | - | chr3_3:40568628-40568647 | None:intergenic | 25.0% |
| ! | AAATATGAAGCAAATGCAAT+TGG | + | chr3_3:40568632-40568651 | Msa0452000:five_prime_UTR | 25.0% |
| ! | AGTAATAGTAACACATATTG+TGG | + | chr3_3:40569182-40569201 | Msa0452000:intron | 25.0% |
| ! | CAAACAGAGAACTTAATAAT+AGG | - | chr3_3:40570298-40570317 | None:intergenic | 25.0% |
| !! | CTTGTAACATTTTTAATACC+GGG | + | chr3_3:40570346-40570365 | Msa0452000:intron | 25.0% |
| ! | AAAAACAGTTAAACTGAACA+TGG | - | chr3_3:40570394-40570413 | None:intergenic | 25.0% |
| !! | CATTTTTCCCATGTTATATT+TGG | + | chr3_3:40570535-40570554 | Msa0452000:intron | 25.0% |
| ! | TAAGAAAGTAAAAAGCTTGA+GGG | - | chr3_3:40571081-40571100 | None:intergenic | 25.0% |
| ! | TTAAGAAAGTAAAAAGCTTG+AGG | - | chr3_3:40571082-40571101 | None:intergenic | 25.0% |
| ! | CAAATATAAGTAAGCTTGTA+AGG | - | chr3_3:40571108-40571127 | None:intergenic | 25.0% |
| !! | AGGATAATGTTCTCATTTTA+TGG | - | chr3_3:40571373-40571392 | None:intergenic | 25.0% |
| !! | TCATTCACTTGTTAGTTTAT+AGG | - | chr3_3:40571466-40571485 | None:intergenic | 25.0% |
| ! | TGTTTCTTATTAGAAAATGG+AGG | - | chr3_3:40571808-40571827 | None:intergenic | 25.0% |
| ! | TCAAAGAATCAATGTATCTA+GGG | - | chr3_3:40571877-40571896 | None:intergenic | 25.0% |
| ! | ATCAAAGAATCAATGTATCT+AGG | - | chr3_3:40571878-40571897 | None:intergenic | 25.0% |
| ! | ATTGGAAATCCAAAATTATG+CGG | - | chr3_3:40571971-40571990 | None:intergenic | 25.0% |
| TTAGTTTACAGTGATGATAC+AGG | - | chr3_3:40568256-40568275 | None:intergenic | 30.0% | |
| !!! | TCCAATCCAGTTTATTTTAG+AGG | + | chr3_3:40568313-40568332 | Msa0452000:five_prime_UTR | 30.0% |
| !! | CAAAAGCCTCTAAAATAAAC+TGG | - | chr3_3:40568322-40568341 | None:intergenic | 30.0% |
| AGAGCAGTATAATTAAGATG+AGG | - | chr3_3:40568505-40568524 | None:intergenic | 30.0% | |
| ATTTATGCATGTGACAGATA+TGG | - | chr3_3:40568597-40568616 | None:intergenic | 30.0% | |
| ! | CAATTGGTCTAAGCTATAAA+TGG | + | chr3_3:40568648-40568667 | Msa0452000:exon | 30.0% |
| AAAATACAGAGATTTCATGC+TGG | + | chr3_3:40568688-40568707 | Msa0452000:CDS | 30.0% | |
| AATTAACACTGATGCTGTTA+TGG | + | chr3_3:40568819-40568838 | Msa0452000:intron | 30.0% | |
| TGGAAATTTCATTCACTACA+TGG | + | chr3_3:40568977-40568996 | Msa0452000:CDS | 30.0% | |
| !!! | TTTGTTTCTGGTTTTGTTGT+TGG | + | chr3_3:40569005-40569024 | Msa0452000:CDS | 30.0% |
| TATCATACGAACTATAGCAA+GGG | - | chr3_3:40569063-40569082 | None:intergenic | 30.0% | |
| GAATGTCGTGAATGATTATT+TGG | + | chr3_3:40569528-40569547 | Msa0452000:intron | 30.0% | |
| GCATATAATTAATCAGACCT+AGG | - | chr3_3:40569614-40569633 | None:intergenic | 30.0% | |
| ATTGAACAACCTTGATTCTA+TGG | - | chr3_3:40569661-40569680 | None:intergenic | 30.0% | |
| ! | ACCTTTTCTCGTATACAAAA+GGG | - | chr3_3:40569738-40569757 | None:intergenic | 30.0% |
| GAAATCAATATGCAACACTT+AGG | + | chr3_3:40570004-40570023 | Msa0452000:intron | 30.0% | |
| TACTTTAGACAGCAATTTCT+CGG | + | chr3_3:40570223-40570242 | Msa0452000:intron | 30.0% | |
| ! | TTTTCCCATGTTATATTTGG+TGG | + | chr3_3:40570538-40570557 | Msa0452000:intron | 30.0% |
| CATACCACCAAATATAACAT+GGG | - | chr3_3:40570545-40570564 | None:intergenic | 30.0% | |
| TCATACCACCAAATATAACA+TGG | - | chr3_3:40570546-40570565 | None:intergenic | 30.0% | |
| ! | ATATTTGGTGGTATGATTCA+TGG | + | chr3_3:40570550-40570569 | Msa0452000:intron | 30.0% |
| ATCATTACATGCACACAATT+TGG | + | chr3_3:40570596-40570615 | Msa0452000:intron | 30.0% | |
| AATAGATGTTGAAAGGATTC+TGG | - | chr3_3:40570930-40570949 | None:intergenic | 30.0% | |
| CTCGAAAAATAGATGTTGAA+AGG | - | chr3_3:40570937-40570956 | None:intergenic | 30.0% | |
| ! | CGAGTTTTCTTTCTTGTATT+CGG | + | chr3_3:40570953-40570972 | Msa0452000:intron | 30.0% |
| TTTCTTTCTTGTATTCGGTT+AGG | + | chr3_3:40570958-40570977 | Msa0452000:intron | 30.0% | |
| ! | AGCAGTATTTGGAATTTCTT+GGG | + | chr3_3:40570981-40571000 | Msa0452000:intron | 30.0% |
| ! | TTCTCATTTTATGGAGAAAG+TGG | - | chr3_3:40571364-40571383 | None:intergenic | 30.0% |
| ! | GTTAGTTTATAGGTTCATTC+AGG | - | chr3_3:40571456-40571475 | None:intergenic | 30.0% |
| TTACCAGGTGATTATTAATG+TGG | - | chr3_3:40571580-40571599 | None:intergenic | 30.0% | |
| CATTTGTTTCAATCTTTACC+AGG | - | chr3_3:40571595-40571614 | None:intergenic | 30.0% | |
| !! | CAAGATCTATGTTACTTTGA+TGG | - | chr3_3:40571750-40571769 | None:intergenic | 30.0% |
| ! | GGATTGGTACAATTATTAAG+AGG | + | chr3_3:40571941-40571960 | Msa0452000:CDS | 30.0% |
| TTTAATGCATCAAGCTTCAT+TGG | - | chr3_3:40571989-40572008 | None:intergenic | 30.0% | |
| AGTTGCAGATTTATTCACCA+AGG | - | chr3_3:40568154-40568173 | None:intergenic | 35.0% | |
| TGGTGAATAAATCTGCAACT+TGG | + | chr3_3:40568154-40568173 | Msa0452000:five_prime_UTR | 35.0% | |
| GGTGAATAAATCTGCAACTT+GGG | + | chr3_3:40568155-40568174 | Msa0452000:five_prime_UTR | 35.0% | |
| !! | GCCTCTAAAATAAACTGGAT+TGG | - | chr3_3:40568317-40568336 | None:intergenic | 35.0% |
| TGGCACTGTTAATCAAATCA+TGG | - | chr3_3:40568572-40568591 | None:intergenic | 35.0% | |
| CATTGAATTCTTTAACACCG+AGG | + | chr3_3:40568771-40568790 | Msa0452000:CDS | 35.0% | |
| TCATCTATCCTTCTCACTAA+TGG | - | chr3_3:40568854-40568873 | None:intergenic | 35.0% | |
| CACTGTCACAAAAGAAAAGA+AGG | - | chr3_3:40568900-40568919 | None:intergenic | 35.0% | |
| ! | TTGTGACAGTGTCATTAGAT+TGG | + | chr3_3:40568909-40568928 | Msa0452000:intron | 35.0% |
| ! | CAGTGTCATTAGATTGGAAT+TGG | + | chr3_3:40568915-40568934 | Msa0452000:intron | 35.0% |
| !!! | TACATGGCTACTTTTGTTTC+TGG | + | chr3_3:40568993-40569012 | Msa0452000:CDS | 35.0% |
| CTATCATACGAACTATAGCA+AGG | - | chr3_3:40569064-40569083 | None:intergenic | 35.0% | |
| GTTCGTATGATAGCTGTAAT+TGG | + | chr3_3:40569071-40569090 | Msa0452000:CDS | 35.0% | |
| AGAAAGATTGAGAGACACAT+TGG | - | chr3_3:40569346-40569365 | None:intergenic | 35.0% | |
| !! | TTTCTAGAGACATGCTTTTG+TGG | + | chr3_3:40569453-40569472 | Msa0452000:intron | 35.0% |
| TTTCGTCATCTTCATAACCT+AGG | + | chr3_3:40569594-40569613 | Msa0452000:intron | 35.0% | |
| ATTCTATGGCACTTCTATTG+AGG | - | chr3_3:40569647-40569666 | None:intergenic | 35.0% | |
| !! | ATAGAAGTGCCATAGAATCA+AGG | + | chr3_3:40569649-40569668 | Msa0452000:intron | 35.0% |
| TTTCTCGTATACAAAAGGGT+TGG | - | chr3_3:40569734-40569753 | None:intergenic | 35.0% | |
| ! | ACCCTTTTGTATACGAGAAA+AGG | + | chr3_3:40569734-40569753 | Msa0452000:CDS | 35.0% |
| ! | CACCTTTTCTCGTATACAAA+AGG | - | chr3_3:40569739-40569758 | None:intergenic | 35.0% |
| GAAATACGCGCAAATTCATA+GGG | - | chr3_3:40569920-40569939 | None:intergenic | 35.0% | |
| AGAAATACGCGCAAATTCAT+AGG | - | chr3_3:40569921-40569940 | None:intergenic | 35.0% | |
| GTGAGAATGATTAGTGCAAT+TGG | + | chr3_3:40570368-40570387 | Msa0452000:intron | 35.0% | |
| ! | TCAAATTCTGTATCGACGAA+TGG | + | chr3_3:40570489-40570508 | Msa0452000:intron | 35.0% |
| ! | CAAATTCTGTATCGACGAAT+GGG | + | chr3_3:40570490-40570509 | Msa0452000:intron | 35.0% |
| TATCGACGAATGGGTAAAAT+TGG | + | chr3_3:40570499-40570518 | Msa0452000:intron | 35.0% | |
| ATGGGAAAAATGTGCATGAA+TGG | - | chr3_3:40570527-40570546 | None:intergenic | 35.0% | |
| AATATGAAGATGAAGTGTGC+AGG | + | chr3_3:40570748-40570767 | Msa0452000:intron | 35.0% | |
| ATATGAAGATGAAGTGTGCA+GGG | + | chr3_3:40570749-40570768 | Msa0452000:intron | 35.0% | |
| ! | GAGCAGTATTTGGAATTTCT+TGG | + | chr3_3:40570980-40570999 | Msa0452000:intron | 35.0% |
| ! | CTGCATTTTTATGCAAATCG+TGG | - | chr3_3:40571551-40571570 | None:intergenic | 35.0% |
| CTTCCACATTAATAATCACC+TGG | + | chr3_3:40571574-40571593 | Msa0452000:intron | 35.0% | |
| ! | CTTTGATGGTAAAGTTGAAC+AGG | - | chr3_3:40571736-40571755 | None:intergenic | 35.0% |
| !! | TTTCGGTTTGTTGATAGAGT+GGG | - | chr3_3:40571776-40571795 | None:intergenic | 35.0% |
| GAATCAATGTATCTAGGGAT+GGG | - | chr3_3:40571872-40571891 | None:intergenic | 35.0% | |
| AGAATCAATGTATCTAGGGA+TGG | - | chr3_3:40571873-40571892 | None:intergenic | 35.0% | |
| TCATCTTCATTCTGTGTAGA+TGG | + | chr3_3:40571905-40571924 | Msa0452000:CDS | 35.0% | |
| AGGTTGAGGTAATAAAGCCT+TGG | + | chr3_3:40568134-40568153 | Msa0452000:five_prime_UTR | 40.0% | |
| CAAGATGAGGATCAAGTATC+TGG | + | chr3_3:40568729-40568748 | Msa0452000:CDS | 40.0% | |
| GAATGAAATTTCCAAGCTGC+AGG | - | chr3_3:40568971-40568990 | None:intergenic | 40.0% | |
| CGTATGATAGCTGTAATTGG+AGG | + | chr3_3:40569074-40569093 | Msa0452000:CDS | 40.0% | |
| AGAGAGCTTAGCAAAAGTAG+TGG | - | chr3_3:40569108-40569127 | None:intergenic | 40.0% | |
| TTCTCAAGCTGGCAATATTG+TGG | + | chr3_3:40569148-40569167 | Msa0452000:CDS | 40.0% | |
| TGAAGATTAACAGTGTCTCC+TGG | + | chr3_3:40569400-40569419 | Msa0452000:intron | 40.0% | |
| ! | GCATGTCTCTAGAAATCACA+CGG | - | chr3_3:40569448-40569467 | None:intergenic | 40.0% |
| ! | AGACATGCTTTTGTGGAATG+TGG | + | chr3_3:40569460-40569479 | Msa0452000:intron | 40.0% |
| ACGAAAACGATGATGTAGCT+AGG | - | chr3_3:40569580-40569599 | None:intergenic | 40.0% | |
| !! | TGTATACGAGAAAAGGTGTC+AGG | + | chr3_3:40569741-40569760 | Msa0452000:CDS | 40.0% |
| CCTTACAGTTCTCTCAAACT+CGG | + | chr3_3:40569875-40569894 | Msa0452000:intron | 40.0% | |
| ATGAAAGCGAGTGTATGGAT+TGG | - | chr3_3:40569950-40569969 | None:intergenic | 40.0% | |
| ! | TGATGATGAAAGCGAGTGTA+TGG | - | chr3_3:40569955-40569974 | None:intergenic | 40.0% |
| TGATTTCCCTTTGTTCTCAG+AGG | - | chr3_3:40569991-40570010 | None:intergenic | 40.0% | |
| TTGTGACAAGAGCAAGATCA+TGG | + | chr3_3:40570199-40570218 | Msa0452000:intron | 40.0% | |
| TTGCACTAATCATTCTCACC+CGG | - | chr3_3:40570367-40570386 | None:intergenic | 40.0% | |
| GTCACATTCTCTCTTGATCA+GGG | - | chr3_3:40570643-40570662 | None:intergenic | 40.0% | |
| TGTCACATTCTCTCTTGATC+AGG | - | chr3_3:40570644-40570663 | None:intergenic | 40.0% | |
| CAAGAGAGAATGTGACAAGT+AGG | + | chr3_3:40570647-40570666 | Msa0452000:intron | 40.0% | |
| TGTGGAAATACGACATTGCT+AGG | + | chr3_3:40570670-40570689 | Msa0452000:intron | 40.0% | |
| ACGGATTTGAAGAGGACTAT+TGG | + | chr3_3:40570863-40570882 | Msa0452000:intron | 40.0% | |
| CGGATTTGAAGAGGACTATT+GGG | + | chr3_3:40570864-40570883 | Msa0452000:intron | 40.0% | |
| ATTCGGTTAGGAGCAGTATT+TGG | + | chr3_3:40570970-40570989 | Msa0452000:intron | 40.0% | |
| CTCATTGGAATAGATTCACG+TGG | + | chr3_3:40571018-40571037 | Msa0452000:intron | 40.0% | |
| !! | CTTTCGGTTTGTTGATAGAG+TGG | - | chr3_3:40571777-40571796 | None:intergenic | 40.0% |
| TGCATGTGACAGATATGGCA+TGG | - | chr3_3:40568592-40568611 | None:intergenic | 45.0% | |
| CAGAGATTTCATGCTGGATG+TGG | + | chr3_3:40568694-40568713 | Msa0452000:CDS | 45.0% | |
| ATTTCATGCTGGATGTGGAC+TGG | + | chr3_3:40568699-40568718 | Msa0452000:CDS | 45.0% | |
| TAACACCGAGGTACGAACAT+CGG | + | chr3_3:40568783-40568802 | Msa0452000:intron | 45.0% | |
| AACATCCGATGTTCGTACCT+CGG | - | chr3_3:40568791-40568810 | None:intergenic | 45.0% | |
| CACTGATGCTGTTATGGTTC+AGG | + | chr3_3:40568825-40568844 | Msa0452000:intron | 45.0% | |
| TCAGGATGCCATTAGTGAGA+AGG | + | chr3_3:40568843-40568862 | Msa0452000:intron | 45.0% | |
| TTGTTGGATTCACCGCTGTT+TGG | + | chr3_3:40569021-40569040 | Msa0452000:CDS | 45.0% | |
| ATTCACCGCTGTTTGGCAAT+TGG | + | chr3_3:40569028-40569047 | Msa0452000:CDS | 45.0% | |
| CAAAGCCAATTGCCAAACAG+CGG | - | chr3_3:40569036-40569055 | None:intergenic | 45.0% | |
| CAGCTTGAGAAAGAGCTTCT+TGG | - | chr3_3:40569139-40569158 | None:intergenic | 45.0% | |
| CAAGAAGCTCTTTCTCAAGC+TGG | + | chr3_3:40569137-40569156 | Msa0452000:CDS | 45.0% | |
| AGCTGGCAATATTGTGGAAC+AGG | + | chr3_3:40569154-40569173 | Msa0452000:CDS | 45.0% | |
| TCGATGCAATGAGAAAGACC+AGG | - | chr3_3:40569421-40569440 | None:intergenic | 45.0% | |
| ! | TGTCTCTAGAAATCACACGG+TGG | - | chr3_3:40569445-40569464 | None:intergenic | 45.0% |
| ACGATGATGTAGCTAGGCTA+TGG | - | chr3_3:40569574-40569593 | None:intergenic | 45.0% | |
| CCGAGTTTGAGAGAACTGTA+AGG | - | chr3_3:40569878-40569897 | None:intergenic | 45.0% | |
| GTTCTCTCAAACTCGGATGA+CGG | + | chr3_3:40569882-40569901 | Msa0452000:intron | 45.0% | |
| !! | AACTCGGATGACGGAGAAAT+AGG | + | chr3_3:40569891-40569910 | Msa0452000:intron | 45.0% |
| ATACGCGCAAATTCATAGGG+AGG | - | chr3_3:40569917-40569936 | None:intergenic | 45.0% | |
| TTCTCAGAGGCGGATAATGA+GGG | - | chr3_3:40569978-40569997 | None:intergenic | 45.0% | |
| ! | TTATCCGCCTCTGAGAACAA+AGG | + | chr3_3:40569981-40570000 | Msa0452000:intron | 45.0% |
| ! | TATCCGCCTCTGAGAACAAA+GGG | + | chr3_3:40569982-40570001 | Msa0452000:intron | 45.0% |
| TTTCCCTTTGTTCTCAGAGG+CGG | - | chr3_3:40569988-40570007 | None:intergenic | 45.0% | |
| GAACTCTTATCCTCAGCACT+CGG | - | chr3_3:40570062-40570081 | None:intergenic | 45.0% | |
| !! | AAGCCGGTTATGGATTAGGT+TGG | + | chr3_3:40570137-40570156 | Msa0452000:intron | 45.0% |
| CCACCAACCTAATCCATAAC+CGG | - | chr3_3:40570143-40570162 | None:intergenic | 45.0% | |
| !! | GATTAGGTTGGTGGTAAAGC+TGG | + | chr3_3:40570149-40570168 | Msa0452000:intron | 45.0% |
| GAGAATGTGACAAGTAGGTG+TGG | + | chr3_3:40570652-40570671 | Msa0452000:intron | 45.0% | |
| GGAAATACGACATTGCTAGG+TGG | + | chr3_3:40570673-40570692 | Msa0452000:intron | 45.0% | |
| GGTGGCTATACTGTTAAGAC+AGG | + | chr3_3:40570691-40570710 | Msa0452000:intron | 45.0% | |
| GCAGGGTTATTATGTGTGTC+TGG | + | chr3_3:40570766-40570785 | Msa0452000:intron | 45.0% | |
| !! | CAAAGGAGAGAGTGTTTGCA+TGG | + | chr3_3:40570805-40570824 | Msa0452000:intron | 45.0% |
| AGCTCTTCACTAGAGATGCA+CGG | + | chr3_3:40570844-40570863 | Msa0452000:intron | 45.0% | |
| AGAGATGCACGGATTTGAAG+AGG | + | chr3_3:40570855-40570874 | Msa0452000:intron | 45.0% | |
| TTGGGAATTAACCGTGACAG+AGG | + | chr3_3:40570882-40570901 | Msa0452000:intron | 45.0% | |
| TGGAATTTCTTGGGAGCTCA+AGG | + | chr3_3:40570990-40571009 | Msa0452000:intron | 45.0% | |
| GAGCTCAAGGAACTACTCAT+TGG | + | chr3_3:40571003-40571022 | Msa0452000:intron | 45.0% | |
| TAGGTTCCACTAACCTTACC+TGG | + | chr3_3:40571688-40571707 | Msa0452000:intron | 45.0% | |
| AAAGAAATTGAGCTCCAGCC+AGG | - | chr3_3:40571709-40571728 | None:intergenic | 45.0% | |
| ! | AATGGAGGCATGCATGCTTT+CGG | - | chr3_3:40571793-40571812 | None:intergenic | 45.0% |
| TGGATTTGCAGCAGGTTTCT+GGG | - | chr3_3:40571846-40571865 | None:intergenic | 45.0% | |
| TTGGATTTGCAGCAGGTTTC+TGG | - | chr3_3:40571847-40571866 | None:intergenic | 45.0% | |
| ATGTATCTAGGGATGGGAGT+TGG | - | chr3_3:40571866-40571885 | None:intergenic | 45.0% | |
| TCATTCTGTGTAGATGGCGT+TGG | + | chr3_3:40571911-40571930 | Msa0452000:CDS | 45.0% | |
| !! | GTAGATGGCGTTGGAGTTTT+AGG | + | chr3_3:40571920-40571939 | Msa0452000:CDS | 45.0% |
| !!! | TGGCGTTGGAGTTTTAGGAT+TGG | + | chr3_3:40571925-40571944 | Msa0452000:CDS | 45.0% |
| ! | AGAGGAGCTCCGCATAATTT+TGG | + | chr3_3:40571959-40571978 | Msa0452000:CDS | 45.0% |
| !!! | AAAATTTTTAGTTAATTATA+AGG | - | chr3_3:40569227-40569246 | None:intergenic | 5.0% |
| GTTTGATGTGTCCTGCAGCT+TGG | + | chr3_3:40568957-40568976 | Msa0452000:intron | 50.0% | |
| ! | CGCTGTTTGGCAATTGGCTT+TGG | + | chr3_3:40569034-40569053 | Msa0452000:CDS | 50.0% |
| GTTCTCAGAGGCGGATAATG+AGG | - | chr3_3:40569979-40569998 | None:intergenic | 50.0% | |
| ! | GGAGCAGCATTTTGCAGTGT+TGG | - | chr3_3:40570041-40570060 | None:intergenic | 50.0% |
| TGTAATCGATTGCGCGAAGC+CGG | + | chr3_3:40570121-40570140 | Msa0452000:intron | 50.0% | |
| !! | CCGGTTATGGATTAGGTTGG+TGG | + | chr3_3:40570140-40570159 | Msa0452000:intron | 50.0% |
| CATGGAACTGACAGCTACCT+TGG | + | chr3_3:40570568-40570587 | Msa0452000:intron | 50.0% | |
| GCATGTAATGATCGTCGCCA+AGG | - | chr3_3:40570588-40570607 | None:intergenic | 50.0% | |
| GTGCAGCGCTGTACTATCAA+AGG | + | chr3_3:40570788-40570807 | Msa0452000:intron | 50.0% | |
| GGTTCATTCAGGCTGTCAAC+TGG | - | chr3_3:40571445-40571464 | None:intergenic | 50.0% | |
| TTCCACTAACCTTACCTGGC+TGG | + | chr3_3:40571692-40571711 | Msa0452000:intron | 50.0% | |
| AATTGAGCTCCAGCCAGGTA+AGG | - | chr3_3:40571704-40571723 | None:intergenic | 50.0% | |
| ! | GATTTGCAGCAGGTTTCTGG+GGG | - | chr3_3:40571844-40571863 | None:intergenic | 50.0% |
| GGATTTGCAGCAGGTTTCTG+GGG | - | chr3_3:40571845-40571864 | None:intergenic | 50.0% | |
| ATGGGAGTTGGATTTGCAGC+AGG | - | chr3_3:40571854-40571873 | None:intergenic | 50.0% | |
| GACTGGAGAGCGACAAGATG+AGG | + | chr3_3:40568716-40568735 | Msa0452000:CDS | 55.0% | |
| ! | AAATGCTGCTCCGAGTGCTG+AGG | + | chr3_3:40570049-40570068 | Msa0452000:intron | 55.0% |
| CGCGAAGCCGGTTATGGATT+AGG | + | chr3_3:40570133-40570152 | Msa0452000:intron | 55.0% | |
| GGTGGTAAAGCTGGTGCTCT+CGG | + | chr3_3:40570158-40570177 | Msa0452000:intron | 55.0% | |
| AGAGAACGCTGCCTCTGTCA+CGG | - | chr3_3:40570896-40570915 | None:intergenic | 55.0% | |
| CTCCAGCCAGGTAAGGTTAG+TGG | - | chr3_3:40571697-40571716 | None:intergenic | 55.0% | |
| ! | GCAGGTTTCTGGGGGATTTG+TGG | - | chr3_3:40571836-40571855 | None:intergenic | 55.0% |
| CGATTGCGCGAAGCCGGTTA+TGG | + | chr3_3:40570127-40570146 | Msa0452000:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 40568131 | 40572015 | 40568131 | ID=Msa0452000;Name=Msa0452000 |
| chr3_3 | mRNA | 40568131 | 40572015 | 40568131 | ID=Msa0452000-mRNA-1;Parent=Msa0452000;Name=Msa0452000-mRNA-1;_AED=0.38;_eAED=0.51;_QI=536|0.5|0.4|1|0.25|0.6|5|0|218 |
| chr3_3 | exon | 40568131 | 40568792 | 40568131 | ID=Msa0452000-mRNA-1:exon:7351;Parent=Msa0452000-mRNA-1 |
| chr3_3 | exon | 40568975 | 40569175 | 40568975 | ID=Msa0452000-mRNA-1:exon:7352;Parent=Msa0452000-mRNA-1 |
| chr3_3 | exon | 40569405 | 40569411 | 40569405 | ID=Msa0452000-mRNA-1:exon:7353;Parent=Msa0452000-mRNA-1 |
| chr3_3 | exon | 40569692 | 40569762 | 40569692 | ID=Msa0452000-mRNA-1:exon:7354;Parent=Msa0452000-mRNA-1 |
| chr3_3 | exon | 40571764 | 40572015 | 40571764 | ID=Msa0452000-mRNA-1:exon:7355;Parent=Msa0452000-mRNA-1 |
| chr3_3 | five_prime_UTR | 40568131 | 40568666 | 40568131 | ID=Msa0452000-mRNA-1:five_prime_utr;Parent=Msa0452000-mRNA-1 |
| chr3_3 | CDS | 40568667 | 40568792 | 40568667 | ID=Msa0452000-mRNA-1:cds;Parent=Msa0452000-mRNA-1 |
| chr3_3 | CDS | 40568975 | 40569175 | 40568975 | ID=Msa0452000-mRNA-1:cds;Parent=Msa0452000-mRNA-1 |
| chr3_3 | CDS | 40569405 | 40569411 | 40569405 | ID=Msa0452000-mRNA-1:cds;Parent=Msa0452000-mRNA-1 |
| chr3_3 | CDS | 40569692 | 40569762 | 40569692 | ID=Msa0452000-mRNA-1:cds;Parent=Msa0452000-mRNA-1 |
| chr3_3 | CDS | 40571764 | 40572015 | 40571764 | ID=Msa0452000-mRNA-1:cds;Parent=Msa0452000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
