Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452930 | XP_039688426.1 | 71.325 | 415 | 77 | 2 | 1 | 373 | 159 | 573 | 0.0 | 602 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452930 | A0A396IRE0 | 84.520 | 323 | 50 | 0 | 51 | 373 | 23 | 345 | 0.0 | 578 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0407820 | Msa0452930 | 0.904136 | 1.681940e-79 | -8.615850e-47 |
| Msa0452930 | Msa0499490 | 0.817973 | 2.497707e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452930 | MtrunA17_Chr3g0098481 | 84.520 | 323 | 50 | 0 | 51 | 373 | 23 | 345 | 0.0 | 578 |
| Msa0452930 | MtrunA17_Chr3g0098531 | 69.463 | 298 | 90 | 1 | 76 | 373 | 1 | 297 | 9.51e-158 | 445 |
| Msa0452930 | MtrunA17_Chr3g0098301 | 55.583 | 412 | 131 | 5 | 1 | 366 | 1 | 406 | 2.58e-152 | 435 |
| Msa0452930 | MtrunA17_Chr3g0102001 | 50.000 | 376 | 173 | 6 | 3 | 373 | 384 | 749 | 6.75e-109 | 335 |
| Msa0452930 | MtrunA17_Chr5g0439061 | 50.000 | 388 | 174 | 6 | 1 | 373 | 362 | 744 | 9.48e-109 | 335 |
| Msa0452930 | MtrunA17_Chr2g0286601 | 45.679 | 324 | 166 | 5 | 47 | 369 | 375 | 689 | 4.83e-81 | 261 |
| Msa0452930 | MtrunA17_Chr5g0439051 | 62.439 | 205 | 75 | 1 | 169 | 373 | 20 | 222 | 1.11e-79 | 243 |
| Msa0452930 | MtrunA17_Chr2g0286551 | 45.820 | 323 | 166 | 4 | 47 | 369 | 355 | 668 | 3.71e-74 | 243 |
| Msa0452930 | MtrunA17_Chr5g0439081 | 54.592 | 196 | 86 | 2 | 169 | 364 | 16 | 208 | 1.41e-67 | 212 |
| Msa0452930 | MtrunA17_Chr3g0098511 | 86.275 | 102 | 14 | 0 | 272 | 373 | 1 | 102 | 4.29e-59 | 186 |
| Msa0452930 | MtrunA17_Chr2g0286561 | 47.170 | 212 | 109 | 2 | 159 | 369 | 5 | 214 | 9.23e-56 | 182 |
| Msa0452930 | MtrunA17_Chr5g0443001 | 37.884 | 293 | 169 | 6 | 67 | 356 | 316 | 598 | 2.79e-48 | 172 |
| Msa0452930 | MtrunA17_Chr2g0297701 | 34.014 | 294 | 185 | 5 | 65 | 356 | 280 | 566 | 2.77e-47 | 169 |
| Msa0452930 | MtrunA17_Chr5g0410201 | 32.258 | 310 | 201 | 4 | 49 | 357 | 22 | 323 | 1.40e-43 | 154 |
| Msa0452930 | MtrunA17_Chr5g0410171 | 31.757 | 296 | 196 | 3 | 63 | 357 | 439 | 729 | 1.26e-42 | 158 |
| Msa0452930 | MtrunA17_Chr5g0410271 | 31.757 | 296 | 196 | 3 | 63 | 357 | 32 | 322 | 3.45e-42 | 150 |
| Msa0452930 | MtrunA17_Chr2g0297491 | 31.818 | 308 | 190 | 6 | 67 | 366 | 91 | 386 | 1.02e-41 | 150 |
| Msa0452930 | MtrunA17_Chr2g0297681 | 31.922 | 307 | 192 | 8 | 67 | 366 | 402 | 698 | 1.24e-40 | 152 |
| Msa0452930 | MtrunA17_Chr6g0457101 | 31.333 | 300 | 194 | 5 | 24 | 320 | 359 | 649 | 4.12e-40 | 150 |
| Msa0452930 | MtrunA17_Chr5g0410371 | 32.441 | 299 | 196 | 5 | 65 | 361 | 2 | 296 | 5.26e-40 | 144 |
| Msa0452930 | MtrunA17_Chr2g0297481 | 32.432 | 296 | 178 | 8 | 67 | 356 | 189 | 468 | 1.86e-39 | 146 |
| Msa0452930 | MtrunA17_Chr5g0410341 | 30.363 | 303 | 191 | 4 | 63 | 357 | 451 | 741 | 3.73e-39 | 148 |
| Msa0452930 | MtrunA17_Chr3g0100301 | 40.000 | 200 | 113 | 4 | 154 | 350 | 205 | 400 | 1.07e-38 | 142 |
| Msa0452930 | MtrunA17_Chr2g0297691 | 31.208 | 298 | 184 | 8 | 67 | 356 | 404 | 688 | 1.35e-38 | 146 |
| Msa0452930 | MtrunA17_Chr6g0456141 | 31.769 | 277 | 182 | 4 | 45 | 320 | 75 | 345 | 1.89e-38 | 142 |
| Msa0452930 | MtrunA17_Chr6g0456101 | 32.660 | 297 | 189 | 5 | 26 | 320 | 415 | 702 | 1.54e-37 | 143 |
| Msa0452930 | MtrunA17_Chr2g0284501 | 33.898 | 295 | 179 | 4 | 62 | 353 | 367 | 648 | 2.56e-37 | 142 |
| Msa0452930 | MtrunA17_Chr3g0100741 | 32.056 | 287 | 182 | 6 | 67 | 350 | 311 | 587 | 3.51e-37 | 141 |
| Msa0452930 | MtrunA17_Chr2g0297651 | 31.879 | 298 | 183 | 8 | 67 | 357 | 404 | 688 | 3.37e-36 | 139 |
| Msa0452930 | MtrunA17_Chr2g0297711 | 29.758 | 289 | 193 | 6 | 70 | 357 | 245 | 524 | 1.06e-34 | 134 |
| Msa0452930 | MtrunA17_Chr5g0410461 | 30.263 | 304 | 201 | 5 | 63 | 361 | 167 | 464 | 1.56e-34 | 132 |
| Msa0452930 | MtrunA17_Chr5g0410581 | 30.370 | 270 | 182 | 4 | 63 | 330 | 498 | 763 | 2.52e-34 | 134 |
| Msa0452930 | MtrunA17_Chr2g0284541 | 34.130 | 293 | 179 | 5 | 62 | 353 | 351 | 630 | 6.77e-34 | 132 |
| Msa0452930 | MtrunA17_Chr3g0096941 | 33.962 | 265 | 161 | 6 | 90 | 350 | 334 | 588 | 8.83e-33 | 129 |
| Msa0452930 | MtrunA17_Chr5g0410191 | 33.880 | 183 | 115 | 3 | 178 | 357 | 9 | 188 | 3.99e-29 | 111 |
| Msa0452930 | MtrunA17_Chr5g0439041 | 37.059 | 170 | 95 | 4 | 4 | 169 | 7 | 168 | 2.27e-26 | 104 |
| Msa0452930 | MtrunA17_Chr5g0410541 | 32.778 | 180 | 112 | 3 | 184 | 361 | 38 | 210 | 4.61e-24 | 99.0 |
| Msa0452930 | MtrunA17_Chr5g0410451 | 31.928 | 166 | 112 | 1 | 163 | 327 | 35 | 200 | 3.54e-21 | 91.3 |
| Msa0452930 | MtrunA17_Chr5g0410511 | 31.868 | 182 | 119 | 3 | 171 | 349 | 4 | 183 | 5.27e-18 | 81.6 |
| Msa0452930 | MtrunA17_Chr2g0297611 | 37.778 | 90 | 55 | 1 | 174 | 263 | 1 | 89 | 8.40e-17 | 75.1 |
| Msa0452930 | MtrunA17_Chr5g0410181 | 32.609 | 138 | 75 | 3 | 228 | 357 | 2 | 129 | 4.42e-14 | 68.9 |
| Msa0452930 | MtrunA17_Chr2g0297521 | 34.118 | 85 | 54 | 2 | 161 | 244 | 1 | 84 | 8.70e-13 | 63.5 |
| Msa0452930 | MtrunA17_Chr1g0211531 | 24.820 | 278 | 196 | 8 | 85 | 356 | 261 | 531 | 1.07e-12 | 69.3 |
| Msa0452930 | MtrunA17_Chr1g0211511 | 25.352 | 213 | 150 | 3 | 67 | 277 | 20 | 225 | 1.36e-12 | 68.2 |
| Msa0452930 | MtrunA17_Chr5g0439071 | 32.716 | 162 | 73 | 5 | 43 | 169 | 382 | 542 | 2.01e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0452930 | AT3G18670.1 | 31.788 | 302 | 197 | 5 | 61 | 360 | 290 | 584 | 3.63e-47 | 169 |
| Msa0452930 | AT3G18670.2 | 31.788 | 302 | 197 | 5 | 61 | 360 | 345 | 639 | 8.30e-47 | 169 |
| Msa0452930 | AT5G35810.1 | 31.270 | 307 | 200 | 5 | 57 | 357 | 28 | 329 | 4.23e-45 | 159 |
| Msa0452930 | AT5G04690.1 | 30.488 | 328 | 204 | 7 | 39 | 356 | 295 | 608 | 1.12e-41 | 154 |
| Msa0452930 | AT5G04690.3 | 30.488 | 328 | 204 | 7 | 39 | 356 | 315 | 628 | 1.57e-41 | 154 |
| Msa0452930 | AT5G04690.2 | 30.488 | 328 | 204 | 7 | 39 | 356 | 329 | 642 | 1.74e-41 | 154 |
| Msa0452930 | AT5G04700.1 | 33.660 | 306 | 184 | 8 | 59 | 356 | 358 | 652 | 2.03e-41 | 154 |
| Msa0452930 | AT3G54065.1 | 33.803 | 213 | 132 | 2 | 155 | 360 | 8 | 218 | 4.78e-38 | 137 |
| Msa0452930 | AT5G04680.2 | 32.484 | 314 | 185 | 9 | 59 | 356 | 222 | 524 | 5.54e-35 | 135 |
| Msa0452930 | AT5G04680.3 | 32.484 | 314 | 185 | 9 | 59 | 356 | 331 | 633 | 8.08e-35 | 135 |
| Msa0452930 | AT5G04680.4 | 32.484 | 314 | 185 | 9 | 59 | 356 | 345 | 647 | 8.47e-35 | 135 |
| Msa0452930 | AT5G04680.1 | 32.484 | 314 | 185 | 9 | 59 | 356 | 374 | 676 | 1.01e-34 | 135 |
| Msa0452930 | AT5G04730.1 | 31.624 | 234 | 154 | 3 | 130 | 362 | 363 | 591 | 1.71e-34 | 134 |
Find 93 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATCTTGTCAAAGTTATT+TGG | 0.197291 | 3_3:-42824707 | Msa0452930:CDS |
| CTTCTTTGTTGCTTCTATAA+TGG | 0.213615 | 3_3:+42825228 | None:intergenic |
| AAACTATTTGTATCATTATA+TGG | 0.242134 | 3_3:-42824512 | Msa0452930:three_prime_UTR |
| AACCCCAGGTGAAATCTTTA+AGG | 0.271604 | 3_3:-42825201 | Msa0452930:CDS |
| TTTGACAAGATCAATATATA+AGG | 0.278898 | 3_3:+42824716 | None:intergenic |
| CAATGAAAATGCGTTACTTT+TGG | 0.287460 | 3_3:-42826653 | Msa0452930:CDS |
| ATGTTCATTTCTTTCATTGC+TGG | 0.288747 | 3_3:-42824843 | Msa0452930:CDS |
| GGTGCCACCACCAAGTATTA+AGG | 0.289821 | 3_3:-42824679 | Msa0452930:CDS |
| GAATTGTCTGCAAAGAAAAT+TGG | 0.333467 | 3_3:-42826781 | Msa0452930:CDS |
| CCTGTTTCCTGATTGCCTCC+AGG | 0.337339 | 3_3:+42825062 | None:intergenic |
| CCTGGAGGCAATCAGGAAAC+AGG | 0.362749 | 3_3:-42825062 | Msa0452930:CDS |
| AACACTGCTTGGAGGATATC+TGG | 0.365015 | 3_3:-42826487 | Msa0452930:CDS |
| TGTTGCTTCTATAATGGAAA+TGG | 0.372877 | 3_3:+42825234 | None:intergenic |
| TATCATTATATGGTGTGATA+AGG | 0.382662 | 3_3:-42824502 | Msa0452930:three_prime_UTR |
| TGACAACACCATTGTACATT+TGG | 0.385568 | 3_3:-42826536 | Msa0452930:CDS |
| CAGCGTCCCTGGAGGCAATC+AGG | 0.398393 | 3_3:-42825069 | Msa0452930:CDS |
| CTGTTTCCTGATTGCCTCCA+GGG | 0.400780 | 3_3:+42825063 | None:intergenic |
| GTCAAGAAGAATCACATATA+TGG | 0.401946 | 3_3:-42827572 | Msa0452930:five_prime_UTR |
| TATTATATTGTATTGCTTTG+TGG | 0.407487 | 3_3:-42824635 | Msa0452930:three_prime_UTR |
| TCCTCCTTAAAGATTTCACC+TGG | 0.410908 | 3_3:+42825197 | None:intergenic |
| TTCGCTGTATCTTCGTTAGT+TGG | 0.411030 | 3_3:-42825002 | Msa0452930:CDS |
| TGTTCTTACTTCCTTCCTGT+TGG | 0.421007 | 3_3:+42827411 | None:intergenic |
| GCATTTATGAAAGATCCTTA+TGG | 0.428644 | 3_3:-42827533 | Msa0452930:exon |
| CATATATGGTGGTCAACTCT+TGG | 0.433819 | 3_3:-42827558 | Msa0452930:five_prime_UTR |
| TGTCAAAGTTATTTGGAAGA+AGG | 0.434014 | 3_3:-42824700 | Msa0452930:CDS |
| CACAAGTTGTTGAGGGGCTA+TGG | 0.442530 | 3_3:-42826612 | Msa0452930:CDS |
| TTGTGGTTGTCTATTCTTCA+CGG | 0.443213 | 3_3:+42826630 | None:intergenic |
| GGCGTCTCCTTTGCTACATC+AGG | 0.443396 | 3_3:-42825092 | Msa0452930:CDS |
| AACTGAACACCCTTAATACT+TGG | 0.472172 | 3_3:+42824669 | None:intergenic |
| CTTCTATAATGGAAATGGTC+TGG | 0.473665 | 3_3:+42825239 | None:intergenic |
| TTGACAAGATCAATATATAA+GGG | 0.475893 | 3_3:+42824717 | None:intergenic |
| GCTACATCAGGCAGCGTCCC+TGG | 0.483838 | 3_3:-42825080 | Msa0452930:CDS |
| GAATGTGACAGGCAAGCAAA+TGG | 0.486924 | 3_3:+42824758 | None:intergenic |
| GTGCCACCACCAAGTATTAA+GGG | 0.487269 | 3_3:-42824678 | Msa0452930:CDS |
| GAAGGACAACCAGCATTTGA+AGG | 0.495876 | 3_3:-42825026 | Msa0452930:CDS |
| CTCCTTAAAGATTTCACCTG+GGG | 0.497170 | 3_3:+42825199 | None:intergenic |
| TTCGAGAAGTGAGTATAGAA+AGG | 0.498713 | 3_3:+42824946 | None:intergenic |
| CATTGTTGGAATTAGTCTCA+TGG | 0.502983 | 3_3:+42826671 | None:intergenic |
| GTTGTAGCAGCACTCGTCGC+AGG | 0.504264 | 3_3:-42825113 | Msa0452930:CDS |
| TTAAGGGTGTTCAGTTGTAG+AGG | 0.505201 | 3_3:-42824662 | Msa0452930:exon |
| ATCATGTTCTCCGTCATCAA+AGG | 0.511885 | 3_3:+42827484 | None:intergenic |
| CATTATAGAAGCAACAAAGA+AGG | 0.512585 | 3_3:-42825227 | Msa0452930:CDS |
| AGAAATGAACATGGCAACAA+TGG | 0.513048 | 3_3:+42824854 | None:intergenic |
| TCATGTTCTCCGTCATCAAA+GGG | 0.514130 | 3_3:+42827485 | None:intergenic |
| ATGGCTCATACATGGTCGGT+GGG | 0.515897 | 3_3:-42827514 | Msa0452930:CDS |
| GATGTCCCACATCATTTGCA+TGG | 0.517564 | 3_3:+42826459 | None:intergenic |
| GCCACAAAGAAAACACTGCT+TGG | 0.521447 | 3_3:-42826498 | Msa0452930:CDS |
| GCTGGTTGTCCTTCGAATGT+CGG | 0.523419 | 3_3:+42825035 | None:intergenic |
| TCTAGAGCACTAGCATGGTT+TGG | 0.525673 | 3_3:-42824555 | Msa0452930:three_prime_UTR |
| ACAGCGAATCCTTCAAATGC+TGG | 0.539347 | 3_3:+42825017 | None:intergenic |
| CCGACCATGTATGAGCCATA+AGG | 0.540105 | 3_3:+42827518 | None:intergenic |
| TATCGGCCGAAAATTCCAAC+AGG | 0.541011 | 3_3:-42827426 | Msa0452930:CDS |
| TGAACACCCTTAATACTTGG+TGG | 0.541734 | 3_3:+42824672 | None:intergenic |
| AAATGATGTGGGACATCAAA+TGG | 0.546182 | 3_3:-42826453 | Msa0452930:CDS |
| GAAGAACAAGATACCACTCT+TGG | 0.549683 | 3_3:+42824791 | None:intergenic |
| CATAGCCCCTCAACAACTTG+TGG | 0.552448 | 3_3:+42826613 | None:intergenic |
| TGGATTGAAACTCATGAGGT+TGG | 0.553251 | 3_3:-42824615 | Msa0452930:three_prime_UTR |
| GGGGCTGTTCCCTTTGATGA+CGG | 0.555477 | 3_3:-42827494 | Msa0452930:CDS |
| GCTTAAATCTACAAGTGGAT+AGG | 0.560975 | 3_3:-42826561 | Msa0452930:CDS |
| TTGTAGATTTAAGCTCTCAA+AGG | 0.563349 | 3_3:+42826570 | None:intergenic |
| CCTCCTTAAAGATTTCACCT+GGG | 0.568420 | 3_3:+42825198 | None:intergenic |
| TATGGCTCATACATGGTCGG+TGG | 0.569010 | 3_3:-42827515 | Msa0452930:CDS |
| AGATCCTTATGGCTCATACA+TGG | 0.570848 | 3_3:-42827522 | Msa0452930:CDS |
| TATTTGATTGCAGCAAAACA+TGG | 0.571630 | 3_3:-42826742 | Msa0452930:CDS |
| ACAAAGAAAACACTGCTTGG+AGG | 0.577511 | 3_3:-42826495 | Msa0452930:CDS |
| AGACAACCACAAGTTGTTGA+GGG | 0.577599 | 3_3:-42826619 | Msa0452930:CDS |
| AGGGTGTTCAGTTGTAGAGG+TGG | 0.579466 | 3_3:-42824659 | Msa0452930:exon |
| ACAGGGAAACCGACATTCGA+AGG | 0.587046 | 3_3:-42825044 | Msa0452930:CDS |
| GGCCGAAAATTCCAACAGGA+AGG | 0.587734 | 3_3:-42827422 | Msa0452930:CDS |
| ACAACTGCATAGAATGTGAC+AGG | 0.589591 | 3_3:+42824747 | None:intergenic |
| GACGCTGCCTGATGTAGCAA+AGG | 0.593819 | 3_3:+42825085 | None:intergenic |
| TAGACAACCACAAGTTGTTG+AGG | 0.598311 | 3_3:-42826620 | Msa0452930:CDS |
| ATATGTCTAGAGCACTAGCA+TGG | 0.598395 | 3_3:-42824560 | Msa0452930:three_prime_UTR |
| ACAGATAAATATACCAAGAG+TGG | 0.605971 | 3_3:-42824804 | Msa0452930:CDS |
| CTGGAGGCAATCAGGAAACA+GGG | 0.606342 | 3_3:-42825061 | Msa0452930:CDS |
| TGAGAGCTTAAATCTACAAG+TGG | 0.610439 | 3_3:-42826566 | Msa0452930:CDS |
| TGCAAAGAAAATTGGCACAA+AGG | 0.616955 | 3_3:-42826773 | Msa0452930:CDS |
| TGCACAGAGCAAAAGAGTAA+TGG | 0.618172 | 3_3:+42827636 | None:intergenic |
| GTGCGGCCATGCAAATGATG+TGG | 0.618816 | 3_3:-42826465 | Msa0452930:CDS |
| ACACCCTTAATACTTGGTGG+TGG | 0.638084 | 3_3:+42824675 | None:intergenic |
| AAGAAGAATCACATATATGG+TGG | 0.641036 | 3_3:-42827569 | Msa0452930:five_prime_UTR |
| CCTTATGGCTCATACATGGT+CGG | 0.643947 | 3_3:-42827518 | Msa0452930:CDS |
| GTGGGACATCAAATGGTACA+AGG | 0.651567 | 3_3:-42826446 | Msa0452930:intron |
| CCCAGGTGAAATCTTTAAGG+AGG | 0.655968 | 3_3:-42825198 | Msa0452930:CDS |
| TTCTAGAAAAGAGTATTGAG+TGG | 0.658308 | 3_3:-42825163 | Msa0452930:CDS |
| TGCGGCCATGCAAATGATGT+GGG | 0.663238 | 3_3:-42826464 | Msa0452930:CDS |
| TTTGTGGATTGAAACTCATG+AGG | 0.674986 | 3_3:-42824619 | Msa0452930:three_prime_UTR |
| ACATCAGGCAGCGTCCCTGG+AGG | 0.679811 | 3_3:-42825077 | Msa0452930:CDS |
| GACAACCACAAGTTGTTGAG+GGG | 0.680583 | 3_3:-42826618 | Msa0452930:CDS |
| TGGCTCATACATGGTCGGTG+GGG | 0.682946 | 3_3:-42827513 | Msa0452930:CDS |
| TGCTTGGAGGATATCTGGTG+CGG | 0.701964 | 3_3:-42826482 | Msa0452930:CDS |
| AGCAATGAAAGAAATGAACA+TGG | 0.705741 | 3_3:+42824845 | None:intergenic |
| AAATGCTGCCAAATGTACAA+TGG | 0.732344 | 3_3:+42826528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATTAAATATATTTTTGA+CGG | + | chr3_3:42824793-42824812 | None:intergenic | 10.0% |
| !! | TTACATATATTTATTATGAA+CGG | - | chr3_3:42824921-42824940 | Msa0452930:CDS | 10.0% |
| !! | TTGAAAATAAAATCTAAATT+AGG | + | chr3_3:42825882-42825901 | None:intergenic | 10.0% |
| !!! | TATTTTCAACATTTTTTTAA+TGG | - | chr3_3:42825893-42825912 | Msa0452930:intron | 10.0% |
| !! | TAAATAAGATTAAAATCTAA+GGG | + | chr3_3:42825983-42826002 | None:intergenic | 10.0% |
| !! | ATAAATAAGATTAAAATCTA+AGG | + | chr3_3:42825984-42826003 | None:intergenic | 10.0% |
| !!! | TTAATTAATTTTGCAAACTT+AGG | - | chr3_3:42824557-42824576 | Msa0452930:three_prime_UTR | 15.0% |
| !!! | ACTTTTTTTTTTTTGAAAGA+TGG | + | chr3_3:42825068-42825087 | None:intergenic | 15.0% |
| !!! | AAAAAATAGAAGTTTTTGAT+TGG | + | chr3_3:42825099-42825118 | None:intergenic | 15.0% |
| !! | TATCAATTAAATTCACTAAT+AGG | + | chr3_3:42825185-42825204 | None:intergenic | 15.0% |
| !! | TTTCTCTTAAATATATCATA+TGG | + | chr3_3:42825836-42825855 | None:intergenic | 15.0% |
| !!! | TTTTAAAATGTCTACAATAT+TGG | + | chr3_3:42826190-42826209 | None:intergenic | 15.0% |
| !!! | TGTATTGTAATTTTTTTTAG+AGG | + | chr3_3:42826622-42826641 | None:intergenic | 15.0% |
| !! | AAACTATTTGTATCATTATA+TGG | - | chr3_3:42827653-42827672 | Msa0452930:five_prime_UTR | 15.0% |
| !!! | CAAAAAAAGTGTATTAGATA+AGG | + | chr3_3:42825127-42825146 | None:intergenic | 20.0% |
| !! | AGAGGGAATATTATATATTA+AGG | - | chr3_3:42825311-42825330 | Msa0452930:intron | 20.0% |
| !!! | TTATTGGCTAACATTAATTT+CGG | - | chr3_3:42826069-42826088 | Msa0452930:intron | 20.0% |
| !!! | TGTTAGATCTTTTGAAATAA+GGG | + | chr3_3:42826327-42826346 | None:intergenic | 20.0% |
| !!! | ATGTTAGATCTTTTGAAATA+AGG | + | chr3_3:42826328-42826347 | None:intergenic | 20.0% |
| !!! | CATTTTTTACTATATGTGAA+TGG | - | chr3_3:42826875-42826894 | Msa0452930:intron | 20.0% |
| !! | TTGACAAGATCAATATATAA+GGG | + | chr3_3:42827451-42827470 | None:intergenic | 20.0% |
| !! | TTTGACAAGATCAATATATA+AGG | + | chr3_3:42827452-42827471 | None:intergenic | 20.0% |
| !! | TATTATATTGTATTGCTTTG+TGG | - | chr3_3:42827530-42827549 | Msa0452930:CDS | 20.0% |
| ! | ACACATGTTAATATACAACT+TGG | - | chr3_3:42824859-42824878 | Msa0452930:CDS | 25.0% |
| !!! | TCTAATACACTTTTTTTGAG+AGG | - | chr3_3:42825129-42825148 | Msa0452930:CDS | 25.0% |
| ! | TAAGAGAAAATTGTATGTCA+AGG | - | chr3_3:42825847-42825866 | Msa0452930:intron | 25.0% |
| !! | TATTGGCTAACATTAATTTC+GGG | - | chr3_3:42826070-42826089 | Msa0452930:intron | 25.0% |
| ! | GACGAATAATGAAGTTAATT+TGG | - | chr3_3:42826163-42826182 | Msa0452930:intron | 25.0% |
| !! | TGCAAAAAGATTAATTTGAC+AGG | - | chr3_3:42826210-42826229 | Msa0452930:intron | 25.0% |
| ! | TACTCTCTAAATAATATCGA+CGG | + | chr3_3:42826288-42826307 | None:intergenic | 25.0% |
| !! | TAGAATGACTACGTATTTTT+GGG | + | chr3_3:42826378-42826397 | None:intergenic | 25.0% |
| !! | ATAGAATGACTACGTATTTT+TGG | + | chr3_3:42826379-42826398 | None:intergenic | 25.0% |
| ! | AAGGGAGAACAAAAATATAT+TGG | + | chr3_3:42826704-42826723 | None:intergenic | 25.0% |
| ! | AAGAGACATAAATAGAGATT+AGG | + | chr3_3:42826828-42826847 | None:intergenic | 25.0% |
| ! | TTGATCTTGTCAAAGTTATT+TGG | - | chr3_3:42827458-42827477 | Msa0452930:CDS | 25.0% |
| ! | TATCATTATATGGTGTGATA+AGG | - | chr3_3:42827663-42827682 | Msa0452930:five_prime_UTR | 25.0% |
| GTCAAGAAGAATCACATATA+TGG | - | chr3_3:42824593-42824612 | Msa0452930:three_prime_UTR | 30.0% | |
| AAGAAGAATCACATATATGG+TGG | - | chr3_3:42824596-42824615 | Msa0452930:three_prime_UTR | 30.0% | |
| GCATTTATGAAAGATCCTTA+TGG | - | chr3_3:42824632-42824651 | Msa0452930:three_prime_UTR | 30.0% | |
| ! | GCTAAGAATTTTGCAGATAT+CGG | - | chr3_3:42824722-42824741 | Msa0452930:CDS | 30.0% |
| TGAACCTCAAGATAAAATAG+AGG | - | chr3_3:42825293-42825312 | Msa0452930:intron | 30.0% | |
| GAACCTCAAGATAAAATAGA+GGG | - | chr3_3:42825294-42825313 | Msa0452930:intron | 30.0% | |
| ! | ATTCCCTCTATTTTATCTTG+AGG | + | chr3_3:42825300-42825319 | None:intergenic | 30.0% |
| GAATTGTCTGCAAAGAAAAT+TGG | - | chr3_3:42825384-42825403 | Msa0452930:intron | 30.0% | |
| TATTTGATTGCAGCAAAACA+TGG | - | chr3_3:42825423-42825442 | Msa0452930:intron | 30.0% | |
| ! | AAGTAACGCATTTTCATTGT+TGG | + | chr3_3:42825511-42825530 | None:intergenic | 30.0% |
| !! | CAATGAAAATGCGTTACTTT+TGG | - | chr3_3:42825512-42825531 | Msa0452930:intron | 30.0% |
| TTGTAGATTTAAGCTCTCAA+AGG | + | chr3_3:42825598-42825617 | None:intergenic | 30.0% | |
| AAAATGCTCGATATCAAGAA+TGG | - | chr3_3:42825916-42825935 | Msa0452930:intron | 30.0% | |
| !!! | TAGATCTTTTGAAATAAGGG+TGG | + | chr3_3:42826324-42826343 | None:intergenic | 30.0% |
| TGTACTTCAAAGTAACTCTT+TGG | - | chr3_3:42826405-42826424 | Msa0452930:intron | 30.0% | |
| !! | ATATTTTTGTTCTCCCTTAG+TGG | - | chr3_3:42826706-42826725 | Msa0452930:CDS | 30.0% |
| !! | TATTTTTGTTCTCCCTTAGT+GGG | - | chr3_3:42826707-42826726 | Msa0452930:CDS | 30.0% |
| GAGATTAGGTAGAAAAGTAA+CGG | + | chr3_3:42826814-42826833 | None:intergenic | 30.0% | |
| ! | TGTTGCTTCTATAATGGAAA+TGG | + | chr3_3:42826934-42826953 | None:intergenic | 30.0% |
| ! | CTTCTTTGTTGCTTCTATAA+TGG | + | chr3_3:42826940-42826959 | None:intergenic | 30.0% |
| CATTATAGAAGCAACAAAGA+AGG | - | chr3_3:42826938-42826957 | Msa0452930:intron | 30.0% | |
| !! | TTCTAGAAAAGAGTATTGAG+TGG | - | chr3_3:42827002-42827021 | Msa0452930:intron | 30.0% |
| AGCAATGAAAGAAATGAACA+TGG | + | chr3_3:42827323-42827342 | None:intergenic | 30.0% | |
| ATGTTCATTTCTTTCATTGC+TGG | - | chr3_3:42827322-42827341 | Msa0452930:intron | 30.0% | |
| ACAGATAAATATACCAAGAG+TGG | - | chr3_3:42827361-42827380 | Msa0452930:intron | 30.0% | |
| TGTCAAAGTTATTTGGAAGA+AGG | - | chr3_3:42827465-42827484 | Msa0452930:CDS | 30.0% | |
| ! | TTCCTTCCTGTTGGAATTTT+CGG | + | chr3_3:42824748-42824767 | None:intergenic | 35.0% |
| GACAACGAATTAGGACAATT+AGG | + | chr3_3:42824829-42824848 | None:intergenic | 35.0% | |
| AAGTTGTACGACAACGAATT+AGG | + | chr3_3:42824838-42824857 | None:intergenic | 35.0% | |
| TGCAAAGAAAATTGGCACAA+AGG | - | chr3_3:42825392-42825411 | Msa0452930:intron | 35.0% | |
| ! | CATTGTTGGAATTAGTCTCA+TGG | + | chr3_3:42825497-42825516 | None:intergenic | 35.0% |
| TTGTGGTTGTCTATTCTTCA+CGG | + | chr3_3:42825538-42825557 | None:intergenic | 35.0% | |
| ! | TAAGCTCTCAAAGGTTTTCA+TGG | + | chr3_3:42825589-42825608 | None:intergenic | 35.0% |
| TGAGAGCTTAAATCTACAAG+TGG | - | chr3_3:42825599-42825618 | Msa0452930:intron | 35.0% | |
| GCTTAAATCTACAAGTGGAT+AGG | - | chr3_3:42825604-42825623 | Msa0452930:intron | 35.0% | |
| TGACAACACCATTGTACATT+TGG | - | chr3_3:42825629-42825648 | Msa0452930:intron | 35.0% | |
| AAATGCTGCCAAATGTACAA+TGG | + | chr3_3:42825640-42825659 | None:intergenic | 35.0% | |
| AAATGATGTGGGACATCAAA+TGG | - | chr3_3:42825712-42825731 | Msa0452930:intron | 35.0% | |
| TAGCCAATAAAATTTCAGCC+TGG | + | chr3_3:42826059-42826078 | None:intergenic | 35.0% | |
| ! | GGTTGCTTTGGTAATTTAAG+CGG | - | chr3_3:42826728-42826747 | Msa0452930:CDS | 35.0% |
| CAAAACACAACACACTCAAA+TGG | + | chr3_3:42826768-42826787 | None:intergenic | 35.0% | |
| ! | CATTTGAGTGTGTTGTGTTT+TGG | - | chr3_3:42826766-42826785 | Msa0452930:CDS | 35.0% |
| ! | CTTCTATAATGGAAATGGTC+TGG | + | chr3_3:42826929-42826948 | None:intergenic | 35.0% |
| TTCGAGAAGTGAGTATAGAA+AGG | + | chr3_3:42827222-42827241 | None:intergenic | 35.0% | |
| ! | TTGCCAATGAAGCTTCTTTT+TGG | - | chr3_3:42827268-42827287 | Msa0452930:intron | 35.0% |
| AAGCCAAAAAGAAGCTTCAT+TGG | + | chr3_3:42827274-42827293 | None:intergenic | 35.0% | |
| AGAAATGAACATGGCAACAA+TGG | + | chr3_3:42827314-42827333 | None:intergenic | 35.0% | |
| AACTGAACACCCTTAATACT+TGG | + | chr3_3:42827499-42827518 | None:intergenic | 35.0% | |
| ! | TTTGTGGATTGAAACTCATG+AGG | - | chr3_3:42827546-42827565 | Msa0452930:exon | 35.0% |
| TGCACAGAGCAAAAGAGTAA+TGG | + | chr3_3:42824532-42824551 | None:intergenic | 40.0% | |
| CATATATGGTGGTCAACTCT+TGG | - | chr3_3:42824607-42824626 | Msa0452930:three_prime_UTR | 40.0% | |
| AGATCCTTATGGCTCATACA+TGG | - | chr3_3:42824643-42824662 | Msa0452930:three_prime_UTR | 40.0% | |
| TCATGTTCTCCGTCATCAAA+GGG | + | chr3_3:42824683-42824702 | None:intergenic | 40.0% | |
| ATCATGTTCTCCGTCATCAA+AGG | + | chr3_3:42824684-42824703 | None:intergenic | 40.0% | |
| TGTTCTTACTTCCTTCCTGT+TGG | + | chr3_3:42824757-42824776 | None:intergenic | 40.0% | |
| TAGACAACCACAAGTTGTTG+AGG | - | chr3_3:42825545-42825564 | Msa0452930:intron | 40.0% | |
| AGACAACCACAAGTTGTTGA+GGG | - | chr3_3:42825546-42825565 | Msa0452930:intron | 40.0% | |
| ! | TCCAAGCAGTGTTTTCTTTG+TGG | + | chr3_3:42825671-42825690 | None:intergenic | 40.0% |
| ACAAAGAAAACACTGCTTGG+AGG | - | chr3_3:42825670-42825689 | Msa0452930:intron | 40.0% | |
| CAATAAAATTTCAGCCTGGC+CGG | + | chr3_3:42826055-42826074 | None:intergenic | 40.0% | |
| TTACCAAAGCAACCCACTAA+GGG | + | chr3_3:42826722-42826741 | None:intergenic | 40.0% | |
| ATTACCAAAGCAACCCACTA+AGG | + | chr3_3:42826723-42826742 | None:intergenic | 40.0% | |
| AACAAAGAAGGAAAAACCCC+AGG | - | chr3_3:42826950-42826969 | Msa0452930:intron | 40.0% | |
| AACCCCAGGTGAAATCTTTA+AGG | - | chr3_3:42826964-42826983 | Msa0452930:intron | 40.0% | |
| CTCCTTAAAGATTTCACCTG+GGG | + | chr3_3:42826969-42826988 | None:intergenic | 40.0% | |
| CCTCCTTAAAGATTTCACCT+GGG | + | chr3_3:42826970-42826989 | None:intergenic | 40.0% | |
| TCCTCCTTAAAGATTTCACC+TGG | + | chr3_3:42826971-42826990 | None:intergenic | 40.0% | |
| TTCGCTGTATCTTCGTTAGT+TGG | - | chr3_3:42827163-42827182 | Msa0452930:intron | 40.0% | |
| GAAGAACAAGATACCACTCT+TGG | + | chr3_3:42827377-42827396 | None:intergenic | 40.0% | |
| ACAACTGCATAGAATGTGAC+AGG | + | chr3_3:42827421-42827440 | None:intergenic | 40.0% | |
| TGAACACCCTTAATACTTGG+TGG | + | chr3_3:42827496-42827515 | None:intergenic | 40.0% | |
| !! | TTAAGGGTGTTCAGTTGTAG+AGG | - | chr3_3:42827503-42827522 | Msa0452930:CDS | 40.0% |
| TGGATTGAAACTCATGAGGT+TGG | - | chr3_3:42827550-42827569 | Msa0452930:five_prime_UTR | 40.0% | |
| ! | ATATGTCTAGAGCACTAGCA+TGG | - | chr3_3:42827605-42827624 | Msa0452930:five_prime_UTR | 40.0% |
| CCTTATGGCTCATACATGGT+CGG | - | chr3_3:42824647-42824666 | Msa0452930:exon | 45.0% | |
| TATCGGCCGAAAATTCCAAC+AGG | - | chr3_3:42824739-42824758 | Msa0452930:CDS | 45.0% | |
| GACAACCACAAGTTGTTGAG+GGG | - | chr3_3:42825547-42825566 | Msa0452930:intron | 45.0% | |
| GCCACAAAGAAAACACTGCT+TGG | - | chr3_3:42825667-42825686 | Msa0452930:intron | 45.0% | |
| AACACTGCTTGGAGGATATC+TGG | - | chr3_3:42825678-42825697 | Msa0452930:intron | 45.0% | |
| GATGTCCCACATCATTTGCA+TGG | + | chr3_3:42825709-42825728 | None:intergenic | 45.0% | |
| GTGGGACATCAAATGGTACA+AGG | - | chr3_3:42825719-42825738 | Msa0452930:intron | 45.0% | |
| ! | CGGCCAGGCTGAAATTTTAT+TGG | - | chr3_3:42826053-42826072 | Msa0452930:intron | 45.0% |
| ACACTCAAATGGCAACACAC+AGG | + | chr3_3:42826757-42826776 | None:intergenic | 45.0% | |
| ! | CCCAGGTGAAATCTTTAAGG+AGG | - | chr3_3:42826967-42826986 | Msa0452930:intron | 45.0% |
| GAAGGACAACCAGCATTTGA+AGG | - | chr3_3:42827139-42827158 | Msa0452930:intron | 45.0% | |
| ACAGCGAATCCTTCAAATGC+TGG | + | chr3_3:42827151-42827170 | None:intergenic | 45.0% | |
| GAATGTGACAGGCAAGCAAA+TGG | + | chr3_3:42827410-42827429 | None:intergenic | 45.0% | |
| GTGCCACCACCAAGTATTAA+GGG | - | chr3_3:42827487-42827506 | Msa0452930:CDS | 45.0% | |
| ! | ACACCCTTAATACTTGGTGG+TGG | + | chr3_3:42827493-42827512 | None:intergenic | 45.0% |
| ! | TCTAGAGCACTAGCATGGTT+TGG | - | chr3_3:42827610-42827629 | Msa0452930:five_prime_UTR | 45.0% |
| !!! | TAATAAAAGATATAATTTTA+AGG | + | chr3_3:42824502-42824521 | None:intergenic | 5.0% |
| CCGACCATGTATGAGCCATA+AGG | + | chr3_3:42824650-42824669 | None:intergenic | 50.0% | |
| TATGGCTCATACATGGTCGG+TGG | - | chr3_3:42824650-42824669 | Msa0452930:exon | 50.0% | |
| ATGGCTCATACATGGTCGGT+GGG | - | chr3_3:42824651-42824670 | Msa0452930:exon | 50.0% | |
| GGCCGAAAATTCCAACAGGA+AGG | - | chr3_3:42824743-42824762 | Msa0452930:CDS | 50.0% | |
| CATAGCCCCTCAACAACTTG+TGG | + | chr3_3:42825555-42825574 | None:intergenic | 50.0% | |
| CACAAGTTGTTGAGGGGCTA+TGG | - | chr3_3:42825553-42825572 | Msa0452930:intron | 50.0% | |
| TGCTTGGAGGATATCTGGTG+CGG | - | chr3_3:42825683-42825702 | Msa0452930:intron | 50.0% | |
| TGCGGCCATGCAAATGATGT+GGG | - | chr3_3:42825701-42825720 | Msa0452930:intron | 50.0% | |
| !! | TCTCCCTTAGTGGGTTGCTT+TGG | - | chr3_3:42826716-42826735 | Msa0452930:CDS | 50.0% |
| CTGTTTCCTGATTGCCTCCA+GGG | + | chr3_3:42827105-42827124 | None:intergenic | 50.0% | |
| CTGGAGGCAATCAGGAAACA+GGG | - | chr3_3:42827104-42827123 | Msa0452930:intron | 50.0% | |
| ACAGGGAAACCGACATTCGA+AGG | - | chr3_3:42827121-42827140 | Msa0452930:intron | 50.0% | |
| GCTGGTTGTCCTTCGAATGT+CGG | + | chr3_3:42827133-42827152 | None:intergenic | 50.0% | |
| ! | GGTGCCACCACCAAGTATTA+AGG | - | chr3_3:42827486-42827505 | Msa0452930:CDS | 50.0% |
| ! | AGGGTGTTCAGTTGTAGAGG+TGG | - | chr3_3:42827506-42827525 | Msa0452930:CDS | 50.0% |
| TGGCTCATACATGGTCGGTG+GGG | - | chr3_3:42824652-42824671 | Msa0452930:exon | 55.0% | |
| GGGGCTGTTCCCTTTGATGA+CGG | - | chr3_3:42824671-42824690 | Msa0452930:CDS | 55.0% | |
| GTGCGGCCATGCAAATGATG+TGG | - | chr3_3:42825700-42825719 | Msa0452930:intron | 55.0% | |
| ACCCACCACCCCATGATTTC+CGG | - | chr3_3:42826033-42826052 | Msa0452930:intron | 55.0% | |
| TCAGCCTGGCCGGAAATCAT+GGG | + | chr3_3:42826045-42826064 | None:intergenic | 55.0% | |
| TTCAGCCTGGCCGGAAATCA+TGG | + | chr3_3:42826046-42826065 | None:intergenic | 55.0% | |
| GGCGTCTCCTTTGCTACATC+AGG | - | chr3_3:42827073-42827092 | Msa0452930:intron | 55.0% | |
| GACGCTGCCTGATGTAGCAA+AGG | + | chr3_3:42827083-42827102 | None:intergenic | 55.0% | |
| CCTGTTTCCTGATTGCCTCC+AGG | + | chr3_3:42827106-42827125 | None:intergenic | 55.0% | |
| CCTGGAGGCAATCAGGAAAC+AGG | - | chr3_3:42827103-42827122 | Msa0452930:intron | 55.0% | |
| GCCGGAAATCATGGGGTGGT+GGG | + | chr3_3:42826037-42826056 | None:intergenic | 60.0% | |
| CAGCCTGGCCGGAAATCATG+GGG | + | chr3_3:42826044-42826063 | None:intergenic | 60.0% | |
| GTTGTAGCAGCACTCGTCGC+AGG | - | chr3_3:42827052-42827071 | Msa0452930:intron | 60.0% | |
| GGCCGGAAATCATGGGGTGG+TGG | + | chr3_3:42826038-42826057 | None:intergenic | 65.0% | |
| CCTGGCCGGAAATCATGGGG+TGG | + | chr3_3:42826041-42826060 | None:intergenic | 65.0% | |
| CCACCCCATGATTTCCGGCC+AGG | - | chr3_3:42826038-42826057 | Msa0452930:intron | 65.0% | |
| GCTACATCAGGCAGCGTCCC+TGG | - | chr3_3:42827085-42827104 | Msa0452930:intron | 65.0% | |
| ACATCAGGCAGCGTCCCTGG+AGG | - | chr3_3:42827088-42827107 | Msa0452930:intron | 65.0% | |
| CAGCGTCCCTGGAGGCAATC+AGG | - | chr3_3:42827096-42827115 | Msa0452930:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 42824486 | 42827701 | 42824486 | ID=Msa0452930;Name=Msa0452930 |
| chr3_3 | mRNA | 42824486 | 42827701 | 42824486 | ID=Msa0452930-mRNA-1;Parent=Msa0452930;Name=Msa0452930-mRNA-1;_AED=0.06;_eAED=0.06;_QI=152|1|1|1|1|0.66|3|179|373 |
| chr3_3 | exon | 42824486 | 42825279 | 42824486 | ID=Msa0452930-mRNA-1:exon:7737;Parent=Msa0452930-mRNA-1 |
| chr3_3 | exon | 42826447 | 42826823 | 42826447 | ID=Msa0452930-mRNA-1:exon:7736;Parent=Msa0452930-mRNA-1 |
| chr3_3 | exon | 42827420 | 42827701 | 42827420 | ID=Msa0452930-mRNA-1:exon:7735;Parent=Msa0452930-mRNA-1 |
| chr3_3 | five_prime_UTR | 42827550 | 42827701 | 42827550 | ID=Msa0452930-mRNA-1:five_prime_utr;Parent=Msa0452930-mRNA-1 |
| chr3_3 | CDS | 42827420 | 42827549 | 42827420 | ID=Msa0452930-mRNA-1:cds;Parent=Msa0452930-mRNA-1 |
| chr3_3 | CDS | 42826447 | 42826823 | 42826447 | ID=Msa0452930-mRNA-1:cds;Parent=Msa0452930-mRNA-1 |
| chr3_3 | CDS | 42824665 | 42825279 | 42824665 | ID=Msa0452930-mRNA-1:cds;Parent=Msa0452930-mRNA-1 |
| chr3_3 | three_prime_UTR | 42824486 | 42824664 | 42824486 | ID=Msa0452930-mRNA-1:three_prime_utr;Parent=Msa0452930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
