Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0499490 | XP_024634879.1 | 69.087 | 482 | 84 | 5 | 1 | 427 | 309 | 780 | 0.0 | 659 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0499490 | A0A396IRE0 | 81.381 | 333 | 52 | 1 | 95 | 427 | 23 | 345 | 0.0 | 565 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0499490 | 0.809209 | 2.118455e-50 | -8.615850e-47 |
| Msa0157290 | Msa0499490 | 0.809200 | 2.127942e-50 | -8.615850e-47 |
| Msa0407820 | Msa0499490 | 0.853482 | 2.321425e-61 | -8.615850e-47 |
| Msa0452930 | Msa0499490 | 0.817973 | 2.497707e-52 | -8.615850e-47 |
| Msa0243100 | Msa0499490 | 0.802360 | 5.822063e-49 | -8.615850e-47 |
| Msa0499490 | Msa0880140 | 0.808564 | 2.911659e-50 | -8.615850e-47 |
| Msa0499490 | Msa1438250 | 0.824429 | 8.111452e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0499490 | MtrunA17_Chr3g0098481 | 81.381 | 333 | 52 | 1 | 95 | 427 | 23 | 345 | 0.0 | 565 |
| Msa0499490 | MtrunA17_Chr3g0098531 | 66.558 | 308 | 92 | 2 | 120 | 427 | 1 | 297 | 1.42e-151 | 431 |
| Msa0499490 | MtrunA17_Chr3g0098301 | 54.028 | 422 | 132 | 6 | 45 | 420 | 1 | 406 | 9.65e-148 | 426 |
| Msa0499490 | MtrunA17_Chr5g0439061 | 47.971 | 419 | 188 | 7 | 24 | 427 | 341 | 744 | 4.29e-110 | 340 |
| Msa0499490 | MtrunA17_Chr3g0102001 | 46.890 | 418 | 188 | 8 | 24 | 427 | 352 | 749 | 4.36e-108 | 335 |
| Msa0499490 | MtrunA17_Chr5g0439051 | 62.255 | 204 | 75 | 1 | 224 | 427 | 21 | 222 | 4.31e-78 | 241 |
| Msa0499490 | MtrunA17_Chr2g0286601 | 44.611 | 334 | 165 | 6 | 91 | 423 | 375 | 689 | 1.83e-77 | 254 |
| Msa0499490 | MtrunA17_Chr2g0286551 | 44.745 | 333 | 165 | 5 | 91 | 423 | 355 | 668 | 4.44e-71 | 236 |
| Msa0499490 | MtrunA17_Chr5g0439081 | 54.359 | 195 | 86 | 2 | 224 | 418 | 17 | 208 | 6.13e-66 | 210 |
| Msa0499490 | MtrunA17_Chr3g0098511 | 85.294 | 102 | 15 | 0 | 326 | 427 | 1 | 102 | 6.99e-57 | 182 |
| Msa0499490 | MtrunA17_Chr2g0286561 | 49.000 | 200 | 99 | 2 | 225 | 423 | 17 | 214 | 3.55e-53 | 177 |
| Msa0499490 | MtrunA17_Chr5g0443001 | 36.964 | 303 | 168 | 7 | 111 | 410 | 316 | 598 | 7.53e-45 | 164 |
| Msa0499490 | MtrunA17_Chr2g0297701 | 32.895 | 304 | 185 | 6 | 109 | 410 | 280 | 566 | 9.49e-43 | 158 |
| Msa0499490 | MtrunA17_Chr5g0410201 | 31.250 | 320 | 201 | 5 | 93 | 411 | 22 | 323 | 2.22e-39 | 144 |
| Msa0499490 | MtrunA17_Chr5g0410171 | 30.719 | 306 | 196 | 4 | 107 | 411 | 439 | 729 | 2.53e-38 | 147 |
| Msa0499490 | MtrunA17_Chr2g0297491 | 31.447 | 318 | 188 | 8 | 111 | 420 | 91 | 386 | 4.71e-38 | 142 |
| Msa0499490 | MtrunA17_Chr5g0410271 | 30.625 | 320 | 203 | 5 | 93 | 411 | 21 | 322 | 7.08e-38 | 140 |
| Msa0499490 | MtrunA17_Chr2g0297481 | 31.699 | 306 | 177 | 8 | 111 | 410 | 189 | 468 | 8.69e-38 | 143 |
| Msa0499490 | MtrunA17_Chr2g0297681 | 31.329 | 316 | 192 | 7 | 111 | 420 | 402 | 698 | 3.63e-37 | 144 |
| Msa0499490 | MtrunA17_Chr6g0457101 | 30.323 | 310 | 194 | 6 | 68 | 374 | 359 | 649 | 7.46e-37 | 142 |
| Msa0499490 | MtrunA17_Chr5g0410371 | 31.392 | 309 | 196 | 6 | 109 | 415 | 2 | 296 | 4.24e-36 | 134 |
| Msa0499490 | MtrunA17_Chr6g0456141 | 30.662 | 287 | 182 | 5 | 89 | 374 | 75 | 345 | 3.94e-35 | 134 |
| Msa0499490 | MtrunA17_Chr5g0410341 | 31.379 | 290 | 176 | 5 | 93 | 374 | 440 | 714 | 4.05e-35 | 138 |
| Msa0499490 | MtrunA17_Chr2g0297691 | 30.619 | 307 | 184 | 7 | 111 | 410 | 404 | 688 | 4.43e-35 | 137 |
| Msa0499490 | MtrunA17_Chr3g0100301 | 37.559 | 213 | 116 | 5 | 195 | 404 | 202 | 400 | 2.24e-34 | 132 |
| Msa0499490 | MtrunA17_Chr6g0456101 | 31.596 | 307 | 189 | 6 | 70 | 374 | 415 | 702 | 3.73e-34 | 135 |
| Msa0499490 | MtrunA17_Chr2g0284501 | 32.787 | 305 | 179 | 5 | 106 | 407 | 367 | 648 | 7.44e-34 | 134 |
| Msa0499490 | MtrunA17_Chr3g0100741 | 30.976 | 297 | 182 | 7 | 111 | 404 | 311 | 587 | 1.91e-33 | 132 |
| Msa0499490 | MtrunA17_Chr2g0297651 | 31.270 | 307 | 183 | 8 | 111 | 411 | 404 | 688 | 4.77e-33 | 131 |
| Msa0499490 | MtrunA17_Chr5g0410461 | 29.299 | 314 | 201 | 6 | 107 | 415 | 167 | 464 | 4.93e-31 | 124 |
| Msa0499490 | MtrunA17_Chr5g0410581 | 29.286 | 280 | 182 | 5 | 107 | 384 | 498 | 763 | 9.75e-31 | 125 |
| Msa0499490 | MtrunA17_Chr2g0297711 | 28.763 | 299 | 193 | 7 | 114 | 411 | 245 | 524 | 1.24e-30 | 123 |
| Msa0499490 | MtrunA17_Chr2g0284541 | 33.003 | 303 | 179 | 6 | 106 | 407 | 351 | 630 | 2.52e-30 | 123 |
| Msa0499490 | MtrunA17_Chr3g0096941 | 33.333 | 276 | 158 | 8 | 134 | 404 | 334 | 588 | 1.77e-29 | 120 |
| Msa0499490 | MtrunA17_Chr5g0410191 | 33.880 | 183 | 115 | 3 | 232 | 411 | 9 | 188 | 9.34e-29 | 111 |
| Msa0499490 | MtrunA17_Chr5g0439041 | 36.364 | 176 | 100 | 4 | 43 | 214 | 2 | 169 | 9.12e-27 | 106 |
| Msa0499490 | MtrunA17_Chr5g0410541 | 32.778 | 180 | 112 | 3 | 238 | 415 | 38 | 210 | 1.92e-23 | 97.8 |
| Msa0499490 | MtrunA17_Chr5g0410451 | 33.544 | 158 | 104 | 1 | 225 | 381 | 43 | 200 | 2.28e-20 | 89.7 |
| Msa0499490 | MtrunA17_Chr5g0410511 | 31.868 | 182 | 119 | 3 | 225 | 403 | 4 | 183 | 1.32e-17 | 80.9 |
| Msa0499490 | MtrunA17_Chr2g0297611 | 37.778 | 90 | 55 | 1 | 228 | 317 | 1 | 89 | 1.27e-16 | 74.7 |
| Msa0499490 | MtrunA17_Chr5g0410181 | 32.609 | 138 | 75 | 3 | 282 | 411 | 2 | 129 | 7.69e-14 | 68.6 |
| Msa0499490 | MtrunA17_Chr5g0439071 | 28.689 | 244 | 105 | 8 | 24 | 221 | 341 | 561 | 1.12e-13 | 72.8 |
| Msa0499490 | MtrunA17_Chr2g0297521 | 34.118 | 85 | 55 | 1 | 214 | 298 | 1 | 84 | 9.50e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0499490 | AT3G18670.1 | 30.449 | 312 | 198 | 6 | 105 | 414 | 290 | 584 | 1.88e-42 | 158 |
| Msa0499490 | AT3G18670.2 | 30.449 | 312 | 198 | 6 | 105 | 414 | 345 | 639 | 2.65e-42 | 158 |
| Msa0499490 | AT5G35810.1 | 30.599 | 317 | 199 | 6 | 101 | 411 | 28 | 329 | 3.31e-42 | 152 |
| Msa0499490 | AT5G04700.1 | 33.648 | 318 | 178 | 10 | 103 | 410 | 358 | 652 | 1.19e-37 | 145 |
| Msa0499490 | AT5G04690.1 | 29.586 | 338 | 204 | 8 | 83 | 410 | 295 | 608 | 1.41e-37 | 144 |
| Msa0499490 | AT5G04690.3 | 29.586 | 338 | 204 | 8 | 83 | 410 | 315 | 628 | 1.52e-37 | 144 |
| Msa0499490 | AT5G04690.2 | 29.586 | 338 | 204 | 8 | 83 | 410 | 329 | 642 | 1.68e-37 | 144 |
| Msa0499490 | AT3G54065.1 | 32.735 | 223 | 131 | 3 | 199 | 414 | 8 | 218 | 2.38e-35 | 130 |
| Msa0499490 | AT5G04680.2 | 30.864 | 324 | 187 | 9 | 103 | 410 | 222 | 524 | 1.52e-31 | 126 |
| Msa0499490 | AT5G04680.3 | 31.481 | 324 | 185 | 10 | 103 | 410 | 331 | 633 | 2.91e-31 | 126 |
| Msa0499490 | AT5G04680.1 | 31.481 | 324 | 185 | 10 | 103 | 410 | 374 | 676 | 2.95e-31 | 127 |
| Msa0499490 | AT5G04730.1 | 30.328 | 244 | 154 | 4 | 174 | 416 | 363 | 591 | 3.29e-31 | 126 |
| Msa0499490 | AT5G04680.4 | 31.481 | 324 | 185 | 10 | 103 | 410 | 345 | 647 | 3.99e-31 | 126 |
Find 89 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATCTTGTCAAAGTTATT+TGG | 0.197291 | 3_4:+38351351 | Msa0499490:CDS |
| CTTCTTTGTTGCTTCTATAA+TGG | 0.213615 | 3_4:-38350830 | None:intergenic |
| TTTGACAAGATCAATATATA+AGG | 0.278898 | 3_4:-38351342 | None:intergenic |
| CAATGAAAATGCGTTACTTT+TGG | 0.287460 | 3_4:+38349584 | Msa0499490:CDS |
| ATGTTCATTTCTTTCATTGC+TGG | 0.288747 | 3_4:+38351215 | Msa0499490:CDS |
| GGTGCCACCACCAAGTATTA+AGG | 0.289821 | 3_4:+38351379 | Msa0499490:CDS |
| GAATTATCTGCAAAGAAAAT+TGG | 0.332140 | 3_4:+38349456 | Msa0499490:CDS |
| CCTGTTTCCTGATTGCCTCC+AGG | 0.337339 | 3_4:-38350996 | None:intergenic |
| ATGGCCTACTAAGTCACTAT+TGG | 0.344837 | 3_4:+38348150 | Msa0499490:CDS |
| CCTGGAGGCAATCAGGAAAC+AGG | 0.362749 | 3_4:+38350996 | Msa0499490:CDS |
| AACACTGCTTGGAGGATATC+TGG | 0.365015 | 3_4:+38349750 | Msa0499490:CDS |
| AAATGTTTGTATTCACCATA+TGG | 0.371774 | 3_4:+38348098 | None:intergenic |
| TGTTGCTTCTATAATGGAAA+TGG | 0.372877 | 3_4:-38350824 | None:intergenic |
| TGACAACACCATTGTACATT+TGG | 0.385568 | 3_4:+38349701 | Msa0499490:CDS |
| TCCTCCTTGAAGATTTCACC+TGG | 0.394517 | 3_4:-38350861 | None:intergenic |
| CAGCGTCCCTGGAGGCAATC+AGG | 0.398393 | 3_4:+38350989 | Msa0499490:CDS |
| CTGTTTCCTGATTGCCTCCA+GGG | 0.400780 | 3_4:-38350995 | None:intergenic |
| GTCAAGAAGAATCACATATA+TGG | 0.401946 | 3_4:+38348670 | Msa0499490:CDS |
| TTCGCTGTATCTTCGTTAGT+TGG | 0.411030 | 3_4:+38351056 | Msa0499490:CDS |
| TGTTCTTACTTCCTTCCTGT+TGG | 0.421007 | 3_4:-38348831 | None:intergenic |
| TGGCCTACTAAGTCACTATT+GGG | 0.428006 | 3_4:+38348151 | Msa0499490:CDS |
| GCATTTATGAAAGATCCTTA+TGG | 0.428644 | 3_4:+38348709 | Msa0499490:CDS |
| CATATATGGTGGTCAACTCT+TGG | 0.433819 | 3_4:+38348684 | Msa0499490:CDS |
| TGTCAAAGTTATTTGGAAGA+AGG | 0.434014 | 3_4:+38351358 | Msa0499490:CDS |
| CACAAGTTGTTGAGGGGCTA+TGG | 0.442530 | 3_4:+38349625 | Msa0499490:CDS |
| TTGTGGTTGTCTATTCTTCA+CGG | 0.443213 | 3_4:-38349607 | None:intergenic |
| GGCGTCTCCTTTGCTACATC+AGG | 0.443396 | 3_4:+38350966 | Msa0499490:CDS |
| CTCCTTGAAGATTTCACCTG+GGG | 0.464772 | 3_4:-38350859 | None:intergenic |
| AACTGAACACCCTTAATACT+TGG | 0.472172 | 3_4:-38351389 | None:intergenic |
| CTTCTATAATGGAAATGGTC+TGG | 0.473665 | 3_4:-38350819 | None:intergenic |
| TTGACAAGATCAATATATAA+GGG | 0.475893 | 3_4:-38351341 | None:intergenic |
| GCTACATCAGGCAGCGTCCC+TGG | 0.483838 | 3_4:+38350978 | Msa0499490:CDS |
| GTGCCACCACCAAGTATTAA+GGG | 0.487269 | 3_4:+38351380 | Msa0499490:CDS |
| GAAGGACAACCAGCATTTGA+AGG | 0.495876 | 3_4:+38351032 | Msa0499490:CDS |
| TTCGAGAAGTGAGTATAGAA+AGG | 0.498713 | 3_4:-38351112 | None:intergenic |
| CATTGTTGGAATTAGTCTCA+TGG | 0.502983 | 3_4:-38349566 | None:intergenic |
| GTTGTAGCAGCACTCGTCGC+AGG | 0.504264 | 3_4:+38350945 | Msa0499490:CDS |
| GAATGCGACAGGCAAGCAAA+TGG | 0.504713 | 3_4:-38351300 | None:intergenic |
| TTAAGGGTGTTCAGTTGTAG+AGG | 0.505201 | 3_4:+38351396 | Msa0499490:CDS |
| AACCCCAGGTGAAATCTTCA+AGG | 0.509855 | 3_4:+38350857 | Msa0499490:CDS |
| CCTCCTTGAAGATTTCACCT+GGG | 0.510574 | 3_4:-38350860 | None:intergenic |
| ATCATGTTCTCCGTCATCAA+AGG | 0.511885 | 3_4:-38348758 | None:intergenic |
| CATTATAGAAGCAACAAAGA+AGG | 0.512585 | 3_4:+38350831 | Msa0499490:CDS |
| AGAAATGAACATGGCAACAA+TGG | 0.513048 | 3_4:-38351204 | None:intergenic |
| TCATGTTCTCCGTCATCAAA+GGG | 0.514130 | 3_4:-38348757 | None:intergenic |
| ATGGCTCATACATGGTCGGT+GGG | 0.515897 | 3_4:+38348728 | Msa0499490:CDS |
| GATGTCCCACATCATTTGCA+TGG | 0.517564 | 3_4:-38349778 | None:intergenic |
| GCCACAAAGAAAACACTGCT+TGG | 0.521447 | 3_4:+38349739 | Msa0499490:CDS |
| GCTGGTTGTCCTTCGAATGT+CGG | 0.523419 | 3_4:-38351023 | None:intergenic |
| ATACCCAATAGTGACTTAGT+AGG | 0.537749 | 3_4:-38348154 | None:intergenic |
| ACAGCGAATCCTTCAAATGC+TGG | 0.539347 | 3_4:-38351041 | None:intergenic |
| CCGACCATGTATGAGCCATA+AGG | 0.540105 | 3_4:-38348724 | None:intergenic |
| TATCGGCCGAAAATTCCAAC+AGG | 0.541011 | 3_4:+38348816 | Msa0499490:CDS |
| TGAACACCCTTAATACTTGG+TGG | 0.541734 | 3_4:-38351386 | None:intergenic |
| AAATGATGTGGGACATCAAA+TGG | 0.546182 | 3_4:+38349784 | Msa0499490:CDS |
| GAAGAACAAGATACCACTCT+TGG | 0.549683 | 3_4:-38351267 | None:intergenic |
| CATAGCCCCTCAACAACTTG+TGG | 0.552448 | 3_4:-38349624 | None:intergenic |
| GGGGCTGTTCCCTTTGATGA+CGG | 0.555477 | 3_4:+38348748 | Msa0499490:CDS |
| GCTTAAATCTACAAGTGGAT+AGG | 0.560975 | 3_4:+38349676 | Msa0499490:CDS |
| TTGTAGATTTAAGCTCTCAA+AGG | 0.563349 | 3_4:-38349667 | None:intergenic |
| TATGGCTCATACATGGTCGG+TGG | 0.569010 | 3_4:+38348727 | Msa0499490:CDS |
| AGATCCTTATGGCTCATACA+TGG | 0.570848 | 3_4:+38348720 | Msa0499490:CDS |
| TATTTGATTGCAGCAAAACA+TGG | 0.571630 | 3_4:+38349495 | Msa0499490:CDS |
| ACAAAGAAAACACTGCTTGG+AGG | 0.577511 | 3_4:+38349742 | Msa0499490:CDS |
| AGACAACCACAAGTTGTTGA+GGG | 0.577599 | 3_4:+38349618 | Msa0499490:CDS |
| ACAGGGAAACCGACATTCGA+AGG | 0.587046 | 3_4:+38351014 | Msa0499490:CDS |
| GGCCGAAAATTCCAACAGGA+AGG | 0.587734 | 3_4:+38348820 | Msa0499490:CDS |
| ACAACTGCATAGAATGCGAC+AGG | 0.592731 | 3_4:-38351311 | None:intergenic |
| GACGCTGCCTGATGTAGCAA+AGG | 0.593819 | 3_4:-38350973 | None:intergenic |
| TGCAAAGAAAATTGGCACAA+AGG | 0.593931 | 3_4:+38349464 | Msa0499490:CDS |
| TGGAAACATGATATGCCATA+TGG | 0.598125 | 3_4:-38348113 | None:intergenic |
| TAGACAACCACAAGTTGTTG+AGG | 0.598311 | 3_4:+38349617 | Msa0499490:CDS |
| ACAGATAAATATACCAAGAG+TGG | 0.605971 | 3_4:+38351254 | Msa0499490:CDS |
| CTGGAGGCAATCAGGAAACA+GGG | 0.606342 | 3_4:+38350997 | Msa0499490:CDS |
| TGAGAGCTTAAATCTACAAG+TGG | 0.610439 | 3_4:+38349671 | Msa0499490:CDS |
| GTGCGGCCATGCAAATGATG+TGG | 0.618816 | 3_4:+38349772 | Msa0499490:CDS |
| ACACCCTTAATACTTGGTGG+TGG | 0.638084 | 3_4:-38351383 | None:intergenic |
| AAGAAGAATCACATATATGG+TGG | 0.641036 | 3_4:+38348673 | Msa0499490:CDS |
| CCTTATGGCTCATACATGGT+CGG | 0.643947 | 3_4:+38348724 | Msa0499490:CDS |
| TTCTAGAAAAGAGTATTGAG+TGG | 0.649250 | 3_4:+38350895 | Msa0499490:CDS |
| GTGGGACATCAAATGGTACA+AGG | 0.651567 | 3_4:+38349791 | Msa0499490:CDS |
| TGCGGCCATGCAAATGATGT+GGG | 0.663238 | 3_4:+38349773 | Msa0499490:CDS |
| ACATCAGGCAGCGTCCCTGG+AGG | 0.679811 | 3_4:+38350981 | Msa0499490:CDS |
| GACAACCACAAGTTGTTGAG+GGG | 0.680583 | 3_4:+38349619 | Msa0499490:CDS |
| TGGCTCATACATGGTCGGTG+GGG | 0.682946 | 3_4:+38348729 | Msa0499490:CDS |
| TGCTTGGAGGATATCTGGTG+CGG | 0.701964 | 3_4:+38349755 | Msa0499490:CDS |
| AGCAATGAAAGAAATGAACA+TGG | 0.705741 | 3_4:-38351213 | None:intergenic |
| CCCAGGTGAAATCTTCAAGG+AGG | 0.728480 | 3_4:+38350860 | Msa0499490:CDS |
| AAATGCTGCCAAATGTACAA+TGG | 0.732344 | 3_4:-38349709 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTATTAAATATATTTTTGA+CGG | - | chr3_4:38348870-38348889 | None:intergenic | 10.0% |
| !! | TTACATATATTTATTATGAA+CGG | + | chr3_4:38348998-38349017 | Msa0499490:intron | 10.0% |
| !! | TTGAAAATAAAATCTAAATT+AGG | - | chr3_4:38349994-38350013 | None:intergenic | 10.0% |
| !! | TTCTCATTTATTTACTATAA+GGG | - | chr3_4:38348473-38348492 | None:intergenic | 15.0% |
| !! | TTTCTCATTTATTTACTATA+AGG | - | chr3_4:38348474-38348493 | None:intergenic | 15.0% |
| !!! | TTAATTAATTTTGCAAACTT+AGG | + | chr3_4:38348634-38348653 | Msa0499490:intron | 15.0% |
| !!! | ACTTTTTTTTTTTTGAAAGA+TGG | - | chr3_4:38349140-38349159 | None:intergenic | 15.0% |
| !!! | AAAAAATAGAAGTTTTTGAT+TGG | - | chr3_4:38349171-38349190 | None:intergenic | 15.0% |
| !! | TATCAATTAAATTCACTAAT+AGG | - | chr3_4:38349257-38349276 | None:intergenic | 15.0% |
| !! | TTTCTCTTAAATATATCATA+TGG | - | chr3_4:38349948-38349967 | None:intergenic | 15.0% |
| !!! | TTTTAAAATGTCTACAATAT+TGG | - | chr3_4:38350072-38350091 | None:intergenic | 15.0% |
| !!! | TGTATTGTAATTTTTTTTAG+AGG | - | chr3_4:38350536-38350555 | None:intergenic | 15.0% |
| !!! | ATTTTACATGATCTAATTTG+TGG | + | chr3_4:38348201-38348220 | Msa0499490:intron | 20.0% |
| !!! | GATTTGACTTATCAATTTAA+TGG | + | chr3_4:38348309-38348328 | Msa0499490:intron | 20.0% |
| !!! | CAAAAAAAGTGTATTAGATA+AGG | - | chr3_4:38349199-38349218 | None:intergenic | 20.0% |
| !! | AGAGGGAATATTATATATTA+AGG | + | chr3_4:38349383-38349402 | Msa0499490:intron | 20.0% |
| !!! | TGTTAGATCTTTTGAAATAA+GGG | - | chr3_4:38350209-38350228 | None:intergenic | 20.0% |
| !!! | ATGTTAGATCTTTTGAAATA+AGG | - | chr3_4:38350210-38350229 | None:intergenic | 20.0% |
| !! | TAAGGAGAACAAAAATATAT+TGG | - | chr3_4:38350618-38350637 | None:intergenic | 20.0% |
| !! | TTGACAAGATCAATATATAA+GGG | - | chr3_4:38351344-38351363 | None:intergenic | 20.0% |
| !! | TTTGACAAGATCAATATATA+AGG | - | chr3_4:38351345-38351364 | None:intergenic | 20.0% |
| ! | ACACATGTTAATATACAACT+TGG | + | chr3_4:38348936-38348955 | Msa0499490:intron | 25.0% |
| !!! | TCTAATACACTTTTTTTGAG+AGG | + | chr3_4:38349201-38349220 | Msa0499490:intron | 25.0% |
| ! | GAATTATCTGCAAAGAAAAT+TGG | + | chr3_4:38349456-38349475 | Msa0499490:CDS | 25.0% |
| ! | TAAGAGAAAATTGTATGTCA+AGG | + | chr3_4:38349959-38349978 | Msa0499490:intron | 25.0% |
| ! | GACGAATAATGAAGTTAATT+TGG | + | chr3_4:38350045-38350064 | Msa0499490:intron | 25.0% |
| !! | TGCAAAAAGATTAATTTGAC+AGG | + | chr3_4:38350092-38350111 | Msa0499490:intron | 25.0% |
| ! | TACTCTCTAAATAATATCGA+CGG | - | chr3_4:38350170-38350189 | None:intergenic | 25.0% |
| !! | TAGAATGACTACGTATTTTT+GGG | - | chr3_4:38350260-38350279 | None:intergenic | 25.0% |
| !! | ATAGAATGACTACGTATTTT+TGG | - | chr3_4:38350261-38350280 | None:intergenic | 25.0% |
| !!! | TATATTTTTGTTCTCCTTAG+TGG | + | chr3_4:38350619-38350638 | Msa0499490:intron | 25.0% |
| !!! | ATATTTTTGTTCTCCTTAGT+GGG | + | chr3_4:38350620-38350639 | Msa0499490:intron | 25.0% |
| ! | AAGAGACATAAATAGAGATT+AGG | - | chr3_4:38350741-38350760 | None:intergenic | 25.0% |
| ! | TTGATCTTGTCAAAGTTATT+TGG | + | chr3_4:38351351-38351370 | Msa0499490:CDS | 25.0% |
| ATCTTTCTTGTGTAACACAA+TGG | - | chr3_4:38348231-38348250 | None:intergenic | 30.0% | |
| AATCACACACACACTATATA+TGG | - | chr3_4:38348293-38348312 | None:intergenic | 30.0% | |
| GTTATTGTCATGCAATCTAT+TGG | + | chr3_4:38348435-38348454 | Msa0499490:intron | 30.0% | |
| ATTGTAGTATGTAGGAATTG+AGG | - | chr3_4:38348510-38348529 | None:intergenic | 30.0% | |
| ATATGGACATTGTAGTATGT+AGG | - | chr3_4:38348518-38348537 | None:intergenic | 30.0% | |
| GTCAAGAAGAATCACATATA+TGG | + | chr3_4:38348670-38348689 | Msa0499490:CDS | 30.0% | |
| AAGAAGAATCACATATATGG+TGG | + | chr3_4:38348673-38348692 | Msa0499490:CDS | 30.0% | |
| GCATTTATGAAAGATCCTTA+TGG | + | chr3_4:38348709-38348728 | Msa0499490:CDS | 30.0% | |
| ! | GCTAAGAATTTTGCAGATAT+CGG | + | chr3_4:38348799-38348818 | Msa0499490:CDS | 30.0% |
| TGAACCTCAAGATAAAATAG+AGG | + | chr3_4:38349365-38349384 | Msa0499490:intron | 30.0% | |
| GAACCTCAAGATAAAATAGA+GGG | + | chr3_4:38349366-38349385 | Msa0499490:intron | 30.0% | |
| ! | ATTCCCTCTATTTTATCTTG+AGG | - | chr3_4:38349372-38349391 | None:intergenic | 30.0% |
| TATTTGATTGCAGCAAAACA+TGG | + | chr3_4:38349495-38349514 | Msa0499490:CDS | 30.0% | |
| ! | AAGTAACGCATTTTCATTGT+TGG | - | chr3_4:38349583-38349602 | None:intergenic | 30.0% |
| !! | CAATGAAAATGCGTTACTTT+TGG | + | chr3_4:38349584-38349603 | Msa0499490:CDS | 30.0% |
| TTGTAGATTTAAGCTCTCAA+AGG | - | chr3_4:38349670-38349689 | None:intergenic | 30.0% | |
| !!! | TAGATCTTTTGAAATAAGGG+TGG | - | chr3_4:38350206-38350225 | None:intergenic | 30.0% |
| !! | AGTTACTTTGAAGTACACTT+TGG | - | chr3_4:38350284-38350303 | None:intergenic | 30.0% |
| TGTACTTCAAAGTAACTCTT+TGG | + | chr3_4:38350287-38350306 | Msa0499490:intron | 30.0% | |
| GAGATTAGGTAGAAAAGTAA+CGG | - | chr3_4:38350727-38350746 | None:intergenic | 30.0% | |
| ! | TGTTGCTTCTATAATGGAAA+TGG | - | chr3_4:38350827-38350846 | None:intergenic | 30.0% |
| ! | CTTCTTTGTTGCTTCTATAA+TGG | - | chr3_4:38350833-38350852 | None:intergenic | 30.0% |
| CATTATAGAAGCAACAAAGA+AGG | + | chr3_4:38350831-38350850 | Msa0499490:CDS | 30.0% | |
| !! | TTCTAGAAAAGAGTATTGAG+TGG | + | chr3_4:38350895-38350914 | Msa0499490:CDS | 30.0% |
| AGCAATGAAAGAAATGAACA+TGG | - | chr3_4:38351216-38351235 | None:intergenic | 30.0% | |
| ATGTTCATTTCTTTCATTGC+TGG | + | chr3_4:38351215-38351234 | Msa0499490:CDS | 30.0% | |
| ACAGATAAATATACCAAGAG+TGG | + | chr3_4:38351254-38351273 | Msa0499490:CDS | 30.0% | |
| TGTCAAAGTTATTTGGAAGA+AGG | + | chr3_4:38351358-38351377 | Msa0499490:CDS | 30.0% | |
| TGGAAACATGATATGCCATA+TGG | - | chr3_4:38348116-38348135 | None:intergenic | 35.0% | |
| TTCCATCACCAAGAAAAAGA+TGG | + | chr3_4:38348131-38348150 | Msa0499490:CDS | 35.0% | |
| ! | TTAGTAGGCCATCTTTTTCT+TGG | - | chr3_4:38348142-38348161 | None:intergenic | 35.0% |
| ATACCCAATAGTGACTTAGT+AGG | - | chr3_4:38348157-38348176 | None:intergenic | 35.0% | |
| TTCTTGTGTAACACAATGGT+AGG | - | chr3_4:38348227-38348246 | None:intergenic | 35.0% | |
| GTTGTTGTAATGCAGTCTAT+TGG | + | chr3_4:38348399-38348418 | Msa0499490:intron | 35.0% | |
| CCTGCATAACTCAATTGATA+TGG | - | chr3_4:38348535-38348554 | None:intergenic | 35.0% | |
| CCATATCAATTGAGTTATGC+AGG | + | chr3_4:38348532-38348551 | Msa0499490:intron | 35.0% | |
| ATCAATTGAGTTATGCAGGA+CGG | + | chr3_4:38348536-38348555 | Msa0499490:intron | 35.0% | |
| ! | TTCCTTCCTGTTGGAATTTT+CGG | - | chr3_4:38348825-38348844 | None:intergenic | 35.0% |
| GACAACGAATTAGGACAATT+AGG | - | chr3_4:38348906-38348925 | None:intergenic | 35.0% | |
| AAGTTGTACGACAACGAATT+AGG | - | chr3_4:38348915-38348934 | None:intergenic | 35.0% | |
| TGCAAAGAAAATTGGCACAA+AGG | + | chr3_4:38349464-38349483 | Msa0499490:CDS | 35.0% | |
| ! | CATTGTTGGAATTAGTCTCA+TGG | - | chr3_4:38349569-38349588 | None:intergenic | 35.0% |
| TTGTGGTTGTCTATTCTTCA+CGG | - | chr3_4:38349610-38349629 | None:intergenic | 35.0% | |
| ! | TAAGCTCTCAAAGGTTTTCA+TGG | - | chr3_4:38349661-38349680 | None:intergenic | 35.0% |
| TGAGAGCTTAAATCTACAAG+TGG | + | chr3_4:38349671-38349690 | Msa0499490:CDS | 35.0% | |
| GCTTAAATCTACAAGTGGAT+AGG | + | chr3_4:38349676-38349695 | Msa0499490:CDS | 35.0% | |
| TGACAACACCATTGTACATT+TGG | + | chr3_4:38349701-38349720 | Msa0499490:CDS | 35.0% | |
| AAATGCTGCCAAATGTACAA+TGG | - | chr3_4:38349712-38349731 | None:intergenic | 35.0% | |
| AAATGATGTGGGACATCAAA+TGG | + | chr3_4:38349784-38349803 | Msa0499490:CDS | 35.0% | |
| ! | GGTTGCTTTGGTAATTTAAG+CGG | + | chr3_4:38350641-38350660 | Msa0499490:intron | 35.0% |
| CAAAACACAACACACTCAAA+TGG | - | chr3_4:38350681-38350700 | None:intergenic | 35.0% | |
| ! | CATTTGAGTGTGTTGTGTTT+TGG | + | chr3_4:38350679-38350698 | Msa0499490:intron | 35.0% |
| ! | CTTCTATAATGGAAATGGTC+TGG | - | chr3_4:38350822-38350841 | None:intergenic | 35.0% |
| TTCGAGAAGTGAGTATAGAA+AGG | - | chr3_4:38351115-38351134 | None:intergenic | 35.0% | |
| ! | TTGCCAATGAAGCTTCTTTT+TGG | + | chr3_4:38351161-38351180 | Msa0499490:CDS | 35.0% |
| AAGCCAAAAAGAAGCTTCAT+TGG | - | chr3_4:38351167-38351186 | None:intergenic | 35.0% | |
| AGAAATGAACATGGCAACAA+TGG | - | chr3_4:38351207-38351226 | None:intergenic | 35.0% | |
| AACTGAACACCCTTAATACT+TGG | - | chr3_4:38351392-38351411 | None:intergenic | 35.0% | |
| ATGGCCTACTAAGTCACTAT+TGG | + | chr3_4:38348150-38348169 | Msa0499490:CDS | 40.0% | |
| TGGCCTACTAAGTCACTATT+GGG | + | chr3_4:38348151-38348170 | Msa0499490:CDS | 40.0% | |
| TGCACAGAGCAAAAGAGTAA+TGG | - | chr3_4:38348609-38348628 | None:intergenic | 40.0% | |
| CATATATGGTGGTCAACTCT+TGG | + | chr3_4:38348684-38348703 | Msa0499490:CDS | 40.0% | |
| AGATCCTTATGGCTCATACA+TGG | + | chr3_4:38348720-38348739 | Msa0499490:CDS | 40.0% | |
| TCATGTTCTCCGTCATCAAA+GGG | - | chr3_4:38348760-38348779 | None:intergenic | 40.0% | |
| ATCATGTTCTCCGTCATCAA+AGG | - | chr3_4:38348761-38348780 | None:intergenic | 40.0% | |
| TGTTCTTACTTCCTTCCTGT+TGG | - | chr3_4:38348834-38348853 | None:intergenic | 40.0% | |
| TAGACAACCACAAGTTGTTG+AGG | + | chr3_4:38349617-38349636 | Msa0499490:CDS | 40.0% | |
| AGACAACCACAAGTTGTTGA+GGG | + | chr3_4:38349618-38349637 | Msa0499490:CDS | 40.0% | |
| ! | TCCAAGCAGTGTTTTCTTTG+TGG | - | chr3_4:38349743-38349762 | None:intergenic | 40.0% |
| ACAAAGAAAACACTGCTTGG+AGG | + | chr3_4:38349742-38349761 | Msa0499490:CDS | 40.0% | |
| ATTACCAAAGCAACCCACTA+AGG | - | chr3_4:38350636-38350655 | None:intergenic | 40.0% | |
| AACAAAGAAGGAAAAACCCC+AGG | + | chr3_4:38350843-38350862 | Msa0499490:CDS | 40.0% | |
| TTCGCTGTATCTTCGTTAGT+TGG | + | chr3_4:38351056-38351075 | Msa0499490:CDS | 40.0% | |
| GAAGAACAAGATACCACTCT+TGG | - | chr3_4:38351270-38351289 | None:intergenic | 40.0% | |
| TGAACACCCTTAATACTTGG+TGG | - | chr3_4:38351389-38351408 | None:intergenic | 40.0% | |
| ! | GGCCATCTTTTTCTTGGTGA+TGG | - | chr3_4:38348136-38348155 | None:intergenic | 45.0% |
| CCTTATGGCTCATACATGGT+CGG | + | chr3_4:38348724-38348743 | Msa0499490:CDS | 45.0% | |
| TATCGGCCGAAAATTCCAAC+AGG | + | chr3_4:38348816-38348835 | Msa0499490:CDS | 45.0% | |
| GACAACCACAAGTTGTTGAG+GGG | + | chr3_4:38349619-38349638 | Msa0499490:CDS | 45.0% | |
| GCCACAAAGAAAACACTGCT+TGG | + | chr3_4:38349739-38349758 | Msa0499490:CDS | 45.0% | |
| AACACTGCTTGGAGGATATC+TGG | + | chr3_4:38349750-38349769 | Msa0499490:CDS | 45.0% | |
| GATGTCCCACATCATTTGCA+TGG | - | chr3_4:38349781-38349800 | None:intergenic | 45.0% | |
| GTGGGACATCAAATGGTACA+AGG | + | chr3_4:38349791-38349810 | Msa0499490:CDS | 45.0% | |
| !! | TTCTCCTTAGTGGGTTGCTT+TGG | + | chr3_4:38350629-38350648 | Msa0499490:intron | 45.0% |
| ACACTCAAATGGCAACACAC+AGG | - | chr3_4:38350670-38350689 | None:intergenic | 45.0% | |
| AACCCCAGGTGAAATCTTCA+AGG | + | chr3_4:38350857-38350876 | Msa0499490:CDS | 45.0% | |
| CTCCTTGAAGATTTCACCTG+GGG | - | chr3_4:38350862-38350881 | None:intergenic | 45.0% | |
| CCTCCTTGAAGATTTCACCT+GGG | - | chr3_4:38350863-38350882 | None:intergenic | 45.0% | |
| TCCTCCTTGAAGATTTCACC+TGG | - | chr3_4:38350864-38350883 | None:intergenic | 45.0% | |
| GAAGGACAACCAGCATTTGA+AGG | + | chr3_4:38351032-38351051 | Msa0499490:CDS | 45.0% | |
| ACAGCGAATCCTTCAAATGC+TGG | - | chr3_4:38351044-38351063 | None:intergenic | 45.0% | |
| ACAACTGCATAGAATGCGAC+AGG | - | chr3_4:38351314-38351333 | None:intergenic | 45.0% | |
| GTGCCACCACCAAGTATTAA+GGG | + | chr3_4:38351380-38351399 | Msa0499490:CDS | 45.0% | |
| ! | ACACCCTTAATACTTGGTGG+TGG | - | chr3_4:38351386-38351405 | None:intergenic | 45.0% |
| !!! | TAATAAAAGATATAATTTTA+AGG | - | chr3_4:38348579-38348598 | None:intergenic | 5.0% |
| CCGACCATGTATGAGCCATA+AGG | - | chr3_4:38348727-38348746 | None:intergenic | 50.0% | |
| TATGGCTCATACATGGTCGG+TGG | + | chr3_4:38348727-38348746 | Msa0499490:CDS | 50.0% | |
| ATGGCTCATACATGGTCGGT+GGG | + | chr3_4:38348728-38348747 | Msa0499490:CDS | 50.0% | |
| GGCCGAAAATTCCAACAGGA+AGG | + | chr3_4:38348820-38348839 | Msa0499490:CDS | 50.0% | |
| CATAGCCCCTCAACAACTTG+TGG | - | chr3_4:38349627-38349646 | None:intergenic | 50.0% | |
| CACAAGTTGTTGAGGGGCTA+TGG | + | chr3_4:38349625-38349644 | Msa0499490:CDS | 50.0% | |
| TGCTTGGAGGATATCTGGTG+CGG | + | chr3_4:38349755-38349774 | Msa0499490:CDS | 50.0% | |
| TGCGGCCATGCAAATGATGT+GGG | + | chr3_4:38349773-38349792 | Msa0499490:CDS | 50.0% | |
| CCCAGGTGAAATCTTCAAGG+AGG | + | chr3_4:38350860-38350879 | Msa0499490:CDS | 50.0% | |
| CTGTTTCCTGATTGCCTCCA+GGG | - | chr3_4:38350998-38351017 | None:intergenic | 50.0% | |
| CTGGAGGCAATCAGGAAACA+GGG | + | chr3_4:38350997-38351016 | Msa0499490:CDS | 50.0% | |
| ACAGGGAAACCGACATTCGA+AGG | + | chr3_4:38351014-38351033 | Msa0499490:CDS | 50.0% | |
| GCTGGTTGTCCTTCGAATGT+CGG | - | chr3_4:38351026-38351045 | None:intergenic | 50.0% | |
| GAATGCGACAGGCAAGCAAA+TGG | - | chr3_4:38351303-38351322 | None:intergenic | 50.0% | |
| ! | GGTGCCACCACCAAGTATTA+AGG | + | chr3_4:38351379-38351398 | Msa0499490:CDS | 50.0% |
| TGGCTCATACATGGTCGGTG+GGG | + | chr3_4:38348729-38348748 | Msa0499490:CDS | 55.0% | |
| GGGGCTGTTCCCTTTGATGA+CGG | + | chr3_4:38348748-38348767 | Msa0499490:CDS | 55.0% | |
| GTGCGGCCATGCAAATGATG+TGG | + | chr3_4:38349772-38349791 | Msa0499490:CDS | 55.0% | |
| GGCGTCTCCTTTGCTACATC+AGG | + | chr3_4:38350966-38350985 | Msa0499490:CDS | 55.0% | |
| GACGCTGCCTGATGTAGCAA+AGG | - | chr3_4:38350976-38350995 | None:intergenic | 55.0% | |
| CCTGTTTCCTGATTGCCTCC+AGG | - | chr3_4:38350999-38351018 | None:intergenic | 55.0% | |
| CCTGGAGGCAATCAGGAAAC+AGG | + | chr3_4:38350996-38351015 | Msa0499490:CDS | 55.0% | |
| GTTGTAGCAGCACTCGTCGC+AGG | + | chr3_4:38350945-38350964 | Msa0499490:CDS | 60.0% | |
| GCTACATCAGGCAGCGTCCC+TGG | + | chr3_4:38350978-38350997 | Msa0499490:CDS | 65.0% | |
| ACATCAGGCAGCGTCCCTGG+AGG | + | chr3_4:38350981-38351000 | Msa0499490:CDS | 65.0% | |
| CAGCGTCCCTGGAGGCAATC+AGG | + | chr3_4:38350989-38351008 | Msa0499490:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 38348099 | 38351415 | 38348099 | ID=Msa0499490;Name=Msa0499490 |
| chr3_4 | mRNA | 38348099 | 38351415 | 38348099 | ID=Msa0499490-mRNA-1;Parent=Msa0499490;Name=Msa0499490-mRNA-1;_AED=0.04;_eAED=0.04;_QI=1|0.66|0.75|1|0.66|0.75|4|0|427 |
| chr3_4 | exon | 38348099 | 38348172 | 38348099 | ID=Msa0499490-mRNA-1:exon:7890;Parent=Msa0499490-mRNA-1 |
| chr3_4 | exon | 38348656 | 38348844 | 38348656 | ID=Msa0499490-mRNA-1:exon:7891;Parent=Msa0499490-mRNA-1 |
| chr3_4 | exon | 38349436 | 38349812 | 38349436 | ID=Msa0499490-mRNA-1:exon:7892;Parent=Msa0499490-mRNA-1 |
| chr3_4 | exon | 38350771 | 38351415 | 38350771 | ID=Msa0499490-mRNA-1:exon:7893;Parent=Msa0499490-mRNA-1 |
| chr3_4 | five_prime_UTR | 38348099 | 38348099 | 38348099 | ID=Msa0499490-mRNA-1:five_prime_utr;Parent=Msa0499490-mRNA-1 |
| chr3_4 | CDS | 38348100 | 38348172 | 38348100 | ID=Msa0499490-mRNA-1:cds;Parent=Msa0499490-mRNA-1 |
| chr3_4 | CDS | 38348656 | 38348844 | 38348656 | ID=Msa0499490-mRNA-1:cds;Parent=Msa0499490-mRNA-1 |
| chr3_4 | CDS | 38349436 | 38349812 | 38349436 | ID=Msa0499490-mRNA-1:cds;Parent=Msa0499490-mRNA-1 |
| chr3_4 | CDS | 38350771 | 38351415 | 38350771 | ID=Msa0499490-mRNA-1:cds;Parent=Msa0499490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
