Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456030 | XP_003600432.1 | 87.926 | 323 | 18 | 3 | 7 | 325 | 25 | 330 | 0.0 | 560 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456030 | sp|Q680K8|Y1576_ARATH | 63.836 | 318 | 98 | 7 | 9 | 325 | 28 | 329 | 1.55e-136 | 393 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456030 | G7IY69 | 87.926 | 323 | 18 | 3 | 7 | 325 | 25 | 330 | 0.0 | 560 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0456030 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0456030 | Msa0486370 | 0.866275 | 3.212617e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456030 | MtrunA17_Chr3g0103031 | 87.926 | 323 | 18 | 3 | 7 | 325 | 25 | 330 | 0.0 | 560 |
| Msa0456030 | MtrunA17_Chr5g0447111 | 60.000 | 300 | 106 | 4 | 25 | 323 | 43 | 329 | 2.98e-117 | 341 |
| Msa0456030 | MtrunA17_Chr1g0159831 | 44.375 | 320 | 163 | 5 | 7 | 323 | 23 | 330 | 4.78e-89 | 270 |
| Msa0456030 | MtrunA17_Chr3g0124921 | 45.714 | 315 | 154 | 7 | 7 | 319 | 22 | 321 | 7.30e-86 | 261 |
| Msa0456030 | MtrunA17_Chr5g0447191 | 56.111 | 180 | 77 | 1 | 142 | 319 | 8 | 187 | 4.03e-59 | 188 |
| Msa0456030 | MtrunA17_Chr4g0029841 | 32.227 | 211 | 138 | 2 | 107 | 317 | 71 | 276 | 3.83e-29 | 113 |
| Msa0456030 | MtrunA17_Chr3g0114411 | 30.097 | 206 | 134 | 5 | 109 | 306 | 48 | 251 | 4.37e-12 | 65.5 |
| Msa0456030 | MtrunA17_Chr7g0259501 | 27.815 | 151 | 94 | 3 | 150 | 287 | 197 | 345 | 9.77e-12 | 65.5 |
| Msa0456030 | MtrunA17_Chr1g0185861 | 28.289 | 152 | 94 | 3 | 150 | 288 | 201 | 350 | 1.04e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0456030 | AT1G55760.1 | 63.836 | 318 | 98 | 7 | 9 | 325 | 28 | 329 | 1.57e-137 | 393 |
| Msa0456030 | AT1G21780.2 | 44.969 | 318 | 158 | 5 | 7 | 323 | 23 | 324 | 1.72e-91 | 276 |
| Msa0456030 | AT1G21780.1 | 44.969 | 318 | 158 | 5 | 7 | 323 | 23 | 324 | 1.72e-91 | 276 |
| Msa0456030 | AT1G01640.1 | 30.366 | 191 | 128 | 4 | 137 | 324 | 1 | 189 | 8.38e-16 | 75.5 |
| Msa0456030 | AT1G01640.2 | 30.588 | 170 | 113 | 4 | 158 | 324 | 1 | 168 | 2.74e-13 | 67.8 |
| Msa0456030 | AT3G03740.1 | 34.177 | 158 | 87 | 4 | 144 | 285 | 199 | 355 | 1.72e-12 | 68.2 |
| Msa0456030 | AT3G56230.1 | 30.247 | 162 | 109 | 3 | 147 | 304 | 98 | 259 | 1.85e-12 | 67.0 |
| Msa0456030 | AT2G40450.1 | 32.540 | 126 | 74 | 4 | 141 | 255 | 4 | 129 | 1.12e-11 | 63.9 |
| Msa0456030 | AT2G39760.2 | 27.703 | 148 | 96 | 1 | 150 | 286 | 184 | 331 | 6.50e-11 | 63.2 |
| Msa0456030 | AT2G39760.4 | 27.703 | 148 | 96 | 1 | 150 | 286 | 184 | 331 | 7.03e-11 | 62.8 |
| Msa0456030 | AT2G39760.3 | 27.703 | 148 | 96 | 1 | 150 | 286 | 184 | 331 | 7.03e-11 | 62.8 |
Find 71 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTGAGGTTCCACTTTC+TGG | 0.064092 | 3_3:+49318245 | Msa0456030:CDS |
| CTTGTAACATTGGATATTTC+AGG | 0.153912 | 3_3:-49317753 | None:intergenic |
| ATCCAGTATCTTGTTAAATT+TGG | 0.170654 | 3_3:+49320736 | Msa0456030:CDS |
| TGGTAAAATATTTGAAATTC+AGG | 0.193894 | 3_3:+49320756 | Msa0456030:CDS |
| CGACATGTCTGTGATGTTTA+TGG | 0.202175 | 3_3:-49320488 | None:intergenic |
| ATCTCATCGCTGAAGTCTTT+GGG | 0.249673 | 3_3:+49320815 | Msa0456030:CDS |
| GATCTCATCGCTGAAGTCTT+TGG | 0.302318 | 3_3:+49320814 | Msa0456030:CDS |
| GAAGTCTTTGGGGAAGTTCT+TGG | 0.305595 | 3_3:+49320826 | Msa0456030:CDS |
| TGAGATCCCTGTCCGCGTTT+TGG | 0.322271 | 3_3:-49320798 | None:intergenic |
| TACCAAATTTAACAAGATAC+TGG | 0.332501 | 3_3:-49320738 | None:intergenic |
| AGTCGGAATCCTGTGTATTC+AGG | 0.357721 | 3_3:+49319919 | Msa0456030:intron |
| TTGGGGAAGTTCTTGGTGCC+TGG | 0.360323 | 3_3:+49320833 | Msa0456030:CDS |
| TTCAAAATGCATCACTATAT+CGG | 0.365062 | 3_3:+49320689 | Msa0456030:CDS |
| CGATCTTCAATATCCTTTCC+AGG | 0.370344 | 3_3:-49320851 | None:intergenic |
| GATCGTGTGAAAACATGCTT+TGG | 0.410502 | 3_3:-49320444 | None:intergenic |
| AAATCCTTCACCACCCCATA+TGG | 0.411517 | 3_3:-49320278 | None:intergenic |
| GTGGAGAACCTTGCTCCATA+TGG | 0.412309 | 3_3:+49320263 | Msa0456030:CDS |
| TATTCCTCCAAAACGCGGAC+AGG | 0.453494 | 3_3:+49320791 | Msa0456030:CDS |
| AGGATTATCTCTTGTAACAT+TGG | 0.466890 | 3_3:-49317763 | None:intergenic |
| TGGAGAACCTTGCTCCATAT+GGG | 0.474713 | 3_3:+49320264 | Msa0456030:CDS |
| GCAAAAGCCCTAGGGTCTCT+TGG | 0.476148 | 3_3:+49320319 | Msa0456030:CDS |
| CGAAAAGCTCTCACACATCC+AGG | 0.477842 | 3_3:+49317834 | Msa0456030:CDS |
| CATGTCGATTGAAGTATGTC+AGG | 0.482314 | 3_3:+49320504 | Msa0456030:CDS |
| AAAACTCTCCCGCCTTTCCC+AGG | 0.488012 | 3_3:-49317038 | None:intergenic |
| GCTTTGGAAGACAGGTGAAC+GGG | 0.489275 | 3_3:-49320428 | None:intergenic |
| TTATTTGAATTTGTTGTGAA+AGG | 0.491559 | 3_3:+49320929 | Msa0456030:three_prime_UTR |
| AATGCTTCAGATGGAAGTAT+AGG | 0.496084 | 3_3:+49320382 | Msa0456030:CDS |
| TGCTCCATATGGGGTGGTGA+AGG | 0.497886 | 3_3:+49320274 | Msa0456030:CDS |
| GTCAACAACCTGGGAAAGGC+GGG | 0.514959 | 3_3:+49317030 | Msa0456030:CDS |
| GCATTCTACCAAGAGACCCT+AGG | 0.531172 | 3_3:-49320327 | None:intergenic |
| AGATCGAACGCAAAAGCCCT+AGG | 0.533227 | 3_3:+49320310 | Msa0456030:CDS |
| GAAGTTCTTGGTGCCTGGAA+AGG | 0.537759 | 3_3:+49320838 | Msa0456030:CDS |
| GAAAACATGCTTTGGAAGAC+AGG | 0.538730 | 3_3:-49320436 | None:intergenic |
| GATCTTGATCCAACATCCAC+TGG | 0.539526 | 3_3:-49319945 | None:intergenic |
| CGCATGATAAACGAAGCAAT+TGG | 0.543907 | 3_3:-49317786 | None:intergenic |
| CTGTAAACAATACTACTATG+TGG | 0.544456 | 3_3:-49321042 | None:intergenic |
| CGTGTCGTTAGTTCTGCTCA+TGG | 0.548473 | 3_3:+49317807 | Msa0456030:CDS |
| ATGAAGAATTTCTGACACAT+AGG | 0.551928 | 3_3:+49320560 | Msa0456030:CDS |
| CTTCAAAGGACAAGAAGGCT+CGG | 0.552850 | 3_3:+49320879 | Msa0456030:three_prime_UTR |
| ATCACAATCAATGCTTCAGA+TGG | 0.553746 | 3_3:+49320373 | Msa0456030:CDS |
| TGAAGATCGTGCAACTTCAA+AGG | 0.560576 | 3_3:+49320865 | Msa0456030:exon |
| ATGAAGAGAAACGAGGATTG+TGG | 0.569942 | 3_3:+49316999 | Msa0456030:CDS |
| AAGAGTCAACAACCTGGGAA+AGG | 0.574060 | 3_3:+49317026 | Msa0456030:CDS |
| TTCAGGACACCAGTGGATGT+TGG | 0.576610 | 3_3:+49319936 | Msa0456030:CDS |
| CATTCTACCAAGAGACCCTA+GGG | 0.576970 | 3_3:-49320326 | None:intergenic |
| GGAGAACCTTGCTCCATATG+GGG | 0.579524 | 3_3:+49320265 | Msa0456030:CDS |
| TATCTTCTAGAAGACTCTCA+TGG | 0.579860 | 3_3:-49320639 | None:intergenic |
| ATTCCTCCAAAACGCGGACA+GGG | 0.581021 | 3_3:+49320792 | Msa0456030:CDS |
| ATGATAAACGAAGCAATTGG+AGG | 0.581597 | 3_3:-49317783 | None:intergenic |
| TGCAACTTCAAAGGACAAGA+AGG | 0.589856 | 3_3:+49320874 | Msa0456030:three_prime_UTR |
| TTCTAGAAGACTCTCATGGA+TGG | 0.591651 | 3_3:-49320635 | None:intergenic |
| GCATATGATATATATGTACA+AGG | 0.598546 | 3_3:-49321006 | None:intergenic |
| AGTCAACAACCTGGGAAAGG+CGG | 0.601403 | 3_3:+49317029 | Msa0456030:CDS |
| TCTCATCGCTGAAGTCTTTG+GGG | 0.603546 | 3_3:+49320816 | Msa0456030:CDS |
| GGGTGGTGAAGGATTTACTC+AGG | 0.609959 | 3_3:+49320285 | Msa0456030:CDS |
| TGTGAAATGAAGGTATTTGT+CGG | 0.609961 | 3_3:+49317695 | Msa0456030:intron |
| GGAAGAAAGAGTCAACAACC+TGG | 0.613447 | 3_3:+49317020 | Msa0456030:CDS |
| CTTGGTAGAATGCTAAGAGA+AGG | 0.615271 | 3_3:+49320337 | Msa0456030:CDS |
| CTGTGTATTCAGGACACCAG+TGG | 0.620317 | 3_3:+49319929 | Msa0456030:CDS |
| TGCTTTGGAAGACAGGTGAA+CGG | 0.624572 | 3_3:-49320429 | None:intergenic |
| TCACCACCCCATATGGAGCA+AGG | 0.646739 | 3_3:-49320271 | None:intergenic |
| CAATTTATTCCTCCAAAACG+CGG | 0.648608 | 3_3:+49320786 | Msa0456030:CDS |
| GAAGAAAGAGTCAACAACCT+GGG | 0.649051 | 3_3:+49317021 | Msa0456030:CDS |
| GATCGAACGCAAAAGCCCTA+GGG | 0.649072 | 3_3:+49320311 | Msa0456030:CDS |
| CGACATATCTGACTTGAGAG+AGG | 0.668882 | 3_3:+49320612 | Msa0456030:CDS |
| CACTGGTGTCCTGAATACAC+AGG | 0.678143 | 3_3:-49319928 | None:intergenic |
| TTTGTCGGTGGAGAAGCACA+AGG | 0.689916 | 3_3:+49317710 | Msa0456030:CDS |
| GAAATGAAGGTATTTGTCGG+TGG | 0.696589 | 3_3:+49317698 | Msa0456030:intron |
| GCTAGCGCTTCTGCATGCAG+CGG | 0.709404 | 3_3:+49320582 | Msa0456030:CDS |
| GAACCTTGCTCCATATGGGG+TGG | 0.727934 | 3_3:+49320268 | Msa0456030:CDS |
| GATTCATATGAAGAGAAACG+AGG | 0.748404 | 3_3:+49316992 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAATAAAATTTATT+TGG | + | chr3_3:49318974-49318993 | Msa0456030:intron | 0.0% |
| !! | AAATAGAATGAAATAATAAA+TGG | + | chr3_3:49318915-49318934 | Msa0456030:intron | 10.0% |
| !! | TTTATAAATTGTCTTAAAAA+CGG | + | chr3_3:49319086-49319105 | Msa0456030:intron | 10.0% |
| !!! | ATATATATCATTTTTAATGC+AGG | + | chr3_3:49317384-49317403 | Msa0456030:intron | 15.0% |
| !!! | GTTTTGTATATTATAAAGTT+TGG | + | chr3_3:49317593-49317612 | Msa0456030:intron | 15.0% |
| !!! | AACAAAATTATTCTCTAAAA+TGG | - | chr3_3:49318801-49318820 | None:intergenic | 15.0% |
| !! | TCTCTATGATAAATATATAA+GGG | - | chr3_3:49318884-49318903 | None:intergenic | 15.0% |
| !! | AATGAAATAATAAATGGTTA+AGG | + | chr3_3:49318921-49318940 | Msa0456030:intron | 15.0% |
| !! | ATGAAATAATAAATGGTTAA+GGG | + | chr3_3:49318922-49318941 | Msa0456030:intron | 15.0% |
| !!! | ATAAAATTTATTTGGTTTCT+TGG | + | chr3_3:49318982-49319001 | Msa0456030:intron | 15.0% |
| !!! | TAATTATTATTGATTTTCTG+TGG | + | chr3_3:49319542-49319561 | Msa0456030:intron | 15.0% |
| !!! | AATTTTCGATACATTATTAT+AGG | + | chr3_3:49320240-49320259 | Msa0456030:intron | 15.0% |
| !!! | ATTTTCGATACATTATTATA+GGG | + | chr3_3:49320241-49320260 | Msa0456030:intron | 15.0% |
| !!! | TGTTATTTCAATTTTTCTTG+TGG | + | chr3_3:49317885-49317904 | Msa0456030:intron | 20.0% |
| !!! | AGAATATTTCATTTTTGCAT+AGG | - | chr3_3:49318469-49318488 | None:intergenic | 20.0% |
| !! | TTACTTTAATTAGAAGAAGA+TGG | - | chr3_3:49318745-49318764 | None:intergenic | 20.0% |
| !! | CTCTCTATGATAAATATATA+AGG | - | chr3_3:49318885-49318904 | None:intergenic | 20.0% |
| !!! | CTCAAAATAAATGTCTATTT+TGG | - | chr3_3:49319022-49319041 | None:intergenic | 20.0% |
| !! | NNNNNNNATTTGAAGATTGC+AGG | + | chr3_3:49319490-49319509 | Msa0456030:intron | 20.0% |
| !!! | GTTTAGCTAAAATCAATTTT+GGG | + | chr3_3:49319612-49319631 | Msa0456030:intron | 20.0% |
| !!! | TTTAGCTAAAATCAATTTTG+GGG | + | chr3_3:49319613-49319632 | Msa0456030:intron | 20.0% |
| !! | AAATGCTCATGATTATAAAA+GGG | - | chr3_3:49319660-49319679 | None:intergenic | 20.0% |
| !! | TAAATGCTCATGATTATAAA+AGG | - | chr3_3:49319661-49319680 | None:intergenic | 20.0% |
| !!! | AATGGATTATATAATCAAAC+AGG | + | chr3_3:49319732-49319751 | Msa0456030:intron | 20.0% |
| !!! | ATGGATTATATAATCAAACA+GGG | + | chr3_3:49319733-49319752 | Msa0456030:intron | 20.0% |
| !!! | ATTGTTGATAAAGTTTGTTT+GGG | + | chr3_3:49319867-49319886 | Msa0456030:intron | 20.0% |
| !!! | ATTATAGCATTGATAATTGT+TGG | - | chr3_3:49320054-49320073 | None:intergenic | 20.0% |
| !!! | TGGTAAAATATTTGAAATTC+AGG | + | chr3_3:49320756-49320775 | Msa0456030:CDS | 20.0% |
| !!! | TTATTTGAATTTGTTGTGAA+AGG | + | chr3_3:49320929-49320948 | Msa0456030:three_prime_UTR | 20.0% |
| ! | TTTAGCACATGTTTAGATTA+CGG | - | chr3_3:49317492-49317511 | None:intergenic | 25.0% |
| ! | AAACATGTGCTAAAAAAAAG+TGG | + | chr3_3:49317498-49317517 | Msa0456030:intron | 25.0% |
| ! | AACATGTGCTAAAAAAAAGT+GGG | + | chr3_3:49317499-49317518 | Msa0456030:intron | 25.0% |
| !!! | AAATCAGAATTTTGATTACC+TGG | - | chr3_3:49317855-49317874 | None:intergenic | 25.0% |
| !!! | AATTTTAATGTCCTAATGCA+TGG | + | chr3_3:49318015-49318034 | Msa0456030:intron | 25.0% |
| ! | GAAATTAATCAACAGAAGAA+TGG | - | chr3_3:49318162-49318181 | None:intergenic | 25.0% |
| ! | NNNNNNNNCTTTGATGAGCA+AGG | + | chr3_3:49318389-49318408 | Msa0456030:intron | 25.0% |
| ! | CGAGTAATCAAAATTTATTG+TGG | + | chr3_3:49318607-49318626 | Msa0456030:intron | 25.0% |
| !! | AAATAAAACTCCAAGCTTTT+AGG | - | chr3_3:49318721-49318740 | None:intergenic | 25.0% |
| ! | AGAGAATGAAATGATAGTAA+GGG | - | chr3_3:49319295-49319314 | None:intergenic | 25.0% |
| ! | TGCAAATGTTAATCATTTAG+AGG | + | chr3_3:49319572-49319591 | Msa0456030:intron | 25.0% |
| ! | TTAATCATTTAGAGGCAATT+GGG | + | chr3_3:49319580-49319599 | Msa0456030:intron | 25.0% |
| !! | GGTTTAGCTAAAATCAATTT+TGG | + | chr3_3:49319611-49319630 | Msa0456030:intron | 25.0% |
| !!! | ATCAATTTTGGGGTAATAAT+TGG | + | chr3_3:49319623-49319642 | Msa0456030:intron | 25.0% |
| ! | AATGCTCATGATTATAAAAG+GGG | - | chr3_3:49319659-49319678 | None:intergenic | 25.0% |
| ! | TAATCATTCTGATTCATCAT+TGG | - | chr3_3:49319707-49319726 | None:intergenic | 25.0% |
| ! | ATCAGAATGATTAGTGATAA+TGG | + | chr3_3:49319714-49319733 | Msa0456030:intron | 25.0% |
| ! | TGGATTATATAATCAAACAG+GGG | + | chr3_3:49319734-49319753 | Msa0456030:intron | 25.0% |
| !! | CATTGTTGATAAAGTTTGTT+TGG | + | chr3_3:49319866-49319885 | Msa0456030:intron | 25.0% |
| !! | AGACAATTCAGATTTTAAAC+TGG | + | chr3_3:49319968-49319987 | Msa0456030:CDS | 25.0% |
| ! | GAAAATTAGCATTTCAAACA+AGG | - | chr3_3:49320227-49320246 | None:intergenic | 25.0% |
| !! | GCTTTTCTCAATTATCTTTA+CGG | + | chr3_3:49320526-49320545 | Msa0456030:CDS | 25.0% |
| !! | CTTTTCTCAATTATCTTTAC+GGG | + | chr3_3:49320527-49320546 | Msa0456030:CDS | 25.0% |
| ! | TTCAAAATGCATCACTATAT+CGG | + | chr3_3:49320689-49320708 | Msa0456030:CDS | 25.0% |
| ! | ATCCAGTATCTTGTTAAATT+TGG | + | chr3_3:49320736-49320755 | Msa0456030:CDS | 25.0% |
| ! | TACCAAATTTAACAAGATAC+TGG | - | chr3_3:49320741-49320760 | None:intergenic | 25.0% |
| ! | GCATATGATATATATGTACA+AGG | - | chr3_3:49321009-49321028 | None:intergenic | 25.0% |
| !! | GTTTTTGTTGGAAGGTATAT+TGG | + | chr3_3:49317056-49317075 | Msa0456030:intron | 30.0% |
| ATCAGTCATTCTATTTGGAA+AGG | - | chr3_3:49317112-49317131 | None:intergenic | 30.0% | |
| AGAGAATCAGTCATTCTATT+TGG | - | chr3_3:49317117-49317136 | None:intergenic | 30.0% | |
| AAATCTGATCCTTTCAAGAT+TGG | + | chr3_3:49317207-49317226 | Msa0456030:intron | 30.0% | |
| GATCACAAAACATATGTACT+AGG | - | chr3_3:49317417-49317436 | None:intergenic | 30.0% | |
| ! | GTACATATGTTTTGTGATCA+CGG | + | chr3_3:49317418-49317437 | Msa0456030:intron | 30.0% |
| ACATGTGCTAAAAAAAAGTG+GGG | + | chr3_3:49317500-49317519 | Msa0456030:intron | 30.0% | |
| TCAAATCTATTTAGCCATGT+GGG | - | chr3_3:49317559-49317578 | None:intergenic | 30.0% | |
| TTCAAATCTATTTAGCCATG+TGG | - | chr3_3:49317560-49317579 | None:intergenic | 30.0% | |
| TCAAATCCAATTCCTCATAA+GGG | - | chr3_3:49317632-49317651 | None:intergenic | 30.0% | |
| !! | TTTTGTTGTGTGTGAAATGA+AGG | + | chr3_3:49317685-49317704 | Msa0456030:intron | 30.0% |
| !! | TGTGAAATGAAGGTATTTGT+CGG | + | chr3_3:49317695-49317714 | Msa0456030:intron | 30.0% |
| CTTGTAACATTGGATATTTC+AGG | - | chr3_3:49317756-49317775 | None:intergenic | 30.0% | |
| AGGATTATCTCTTGTAACAT+TGG | - | chr3_3:49317766-49317785 | None:intergenic | 30.0% | |
| ! | GAGTTTAATTTCCATGCATT+AGG | - | chr3_3:49318029-49318048 | None:intergenic | 30.0% |
| ! | AGAGCAATGAAGATTTTGTT+TGG | + | chr3_3:49318222-49318241 | Msa0456030:CDS | 30.0% |
| !! | AGATTTTGTTTGGTCAATTG+AGG | + | chr3_3:49318232-49318251 | Msa0456030:CDS | 30.0% |
| ! | ATGATGAATTTTCCAGAAAG+TGG | - | chr3_3:49318260-49318279 | None:intergenic | 30.0% |
| GACAAAAGACATAAATGAAG+AGG | - | chr3_3:49318692-49318711 | None:intergenic | 30.0% | |
| !!! | TGTCATTTTTCCTAAAAGCT+TGG | + | chr3_3:49318708-49318727 | Msa0456030:intron | 30.0% |
| !!! | AGACATTTATTTTGAGACGA+AGG | + | chr3_3:49319026-49319045 | Msa0456030:intron | 30.0% |
| !!! | GACATTTATTTTGAGACGAA+GGG | + | chr3_3:49319027-49319046 | Msa0456030:intron | 30.0% |
| ! | AGTACATGAGAAGTGTAAAT+GGG | + | chr3_3:49319050-49319069 | Msa0456030:intron | 30.0% |
| TAAAATACTTCTAAGTGACG+TGG | + | chr3_3:49319134-49319153 | Msa0456030:intron | 30.0% | |
| ! | AATGATAGTAAGGGGTATAA+GGG | - | chr3_3:49319286-49319305 | None:intergenic | 30.0% |
| ! | AAATGATAGTAAGGGGTATA+AGG | - | chr3_3:49319287-49319306 | None:intergenic | 30.0% |
| GAGAATGAAATGATAGTAAG+GGG | - | chr3_3:49319294-49319313 | None:intergenic | 30.0% | |
| GAGAGAATGAAATGATAGTA+AGG | - | chr3_3:49319296-49319315 | None:intergenic | 30.0% | |
| AGTCTTAAGCATATACATCT+GGG | - | chr3_3:49319516-49319535 | None:intergenic | 30.0% | |
| ! | TAGTCTTAAGCATATACATC+TGG | - | chr3_3:49319517-49319536 | None:intergenic | 30.0% |
| GTTAATCATTTAGAGGCAAT+TGG | + | chr3_3:49319579-49319598 | Msa0456030:intron | 30.0% | |
| ! | TCATTGGTGATTATGAACAA+AGG | - | chr3_3:49319691-49319710 | None:intergenic | 30.0% |
| ATTATATAATCAAACAGGGG+AGG | + | chr3_3:49319737-49319756 | Msa0456030:intron | 30.0% | |
| AGATTTAACTAGTTAACCCT+TGG | - | chr3_3:49319811-49319830 | None:intergenic | 30.0% | |
| !!! | GGATTTTGATTTTCTGTAGT+CGG | + | chr3_3:49319902-49319921 | Msa0456030:intron | 30.0% |
| CAAAATCCAGTTCATTTCTA+CGG | + | chr3_3:49320108-49320127 | Msa0456030:intron | 30.0% | |
| ATAATGATTCCCTCAAATCT+TGG | - | chr3_3:49320137-49320156 | None:intergenic | 30.0% | |
| TTCGATACATTATTATAGGG+TGG | + | chr3_3:49320244-49320263 | Msa0456030:intron | 30.0% | |
| ATGAAGAATTTCTGACACAT+AGG | + | chr3_3:49320560-49320579 | Msa0456030:CDS | 30.0% | |
| ATACGAAAAATGTACTTGAG+AGG | + | chr3_3:49320665-49320684 | Msa0456030:CDS | 30.0% | |
| CTGTAAACAATACTACTATG+TGG | - | chr3_3:49321045-49321064 | None:intergenic | 30.0% | |
| AAAGTGCAACTGTGATTTCA+TGG | - | chr3_3:49317089-49317108 | None:intergenic | 35.0% | |
| TCAATGGAGAATCGATAACT+TGG | + | chr3_3:49317167-49317186 | Msa0456030:intron | 35.0% | |
| ATCCTTTCAAGATTGGTATC+TGG | + | chr3_3:49317214-49317233 | Msa0456030:intron | 35.0% | |
| TTCCAGATACCAATCTTGAA+AGG | - | chr3_3:49317219-49317238 | None:intergenic | 35.0% | |
| ! | TCAAGATTGGTATCTGGAAT+TGG | + | chr3_3:49317220-49317239 | Msa0456030:intron | 35.0% |
| AAAAAAAAGTGGGGTTGTGT+TGG | + | chr3_3:49317509-49317528 | Msa0456030:intron | 35.0% | |
| ! | TTTTTGCAAAGACCCTTATG+AGG | + | chr3_3:49317617-49317636 | Msa0456030:intron | 35.0% |
| CTCAAATCCAATTCCTCATA+AGG | - | chr3_3:49317633-49317652 | None:intergenic | 35.0% | |
| ATGATAAACGAAGCAATTGG+AGG | - | chr3_3:49317786-49317805 | None:intergenic | 35.0% | |
| TCTTGTGGATAGAGAACTAT+TGG | + | chr3_3:49317900-49317919 | Msa0456030:intron | 35.0% | |
| AGAGAAAGCAAGACAAAACT+TGG | + | chr3_3:49318427-49318446 | Msa0456030:intron | 35.0% | |
| TTTGCTCTTGTAAATGAGCA+AGG | + | chr3_3:49318509-49318528 | Msa0456030:intron | 35.0% | |
| ! | TCTTTCTAGAAGCTTGTATG+TGG | + | chr3_3:49318660-49318679 | Msa0456030:intron | 35.0% |
| ! | GAGTACATGAGAAGTGTAAA+TGG | + | chr3_3:49319049-49319068 | Msa0456030:intron | 35.0% |
| ! | TGCAACAGTACGTTTTGTAA+GGG | - | chr3_3:49319189-49319208 | None:intergenic | 35.0% |
| ! | ATGCAACAGTACGTTTTGTA+AGG | - | chr3_3:49319190-49319209 | None:intergenic | 35.0% |
| TCTGTTGAAGAAAAAGAGAG+TGG | - | chr3_3:49319218-49319237 | None:intergenic | 35.0% | |
| ! | AAGGGGTATAAGGGTAATTT+GGG | - | chr3_3:49319277-49319296 | None:intergenic | 35.0% |
| ! | TAAGGGGTATAAGGGTAATT+TGG | - | chr3_3:49319278-49319297 | None:intergenic | 35.0% |
| TGGTGAGGTTGTTTATATAG+AGG | - | chr3_3:49319329-49319348 | None:intergenic | 35.0% | |
| TCAAATTAGAGTCATCACTG+TGG | - | chr3_3:49319838-49319857 | None:intergenic | 35.0% | |
| ! | AAATCAGCATGTTTTCTGCA+CGG | + | chr3_3:49320016-49320035 | Msa0456030:intron | 35.0% |
| ! | CGTAGAAATGAACTGGATTT+TGG | - | chr3_3:49320110-49320129 | None:intergenic | 35.0% |
| ATCACAATCAATGCTTCAGA+TGG | + | chr3_3:49320373-49320392 | Msa0456030:CDS | 35.0% | |
| ! | AATGCTTCAGATGGAAGTAT+AGG | + | chr3_3:49320382-49320401 | Msa0456030:CDS | 35.0% |
| ! | TATCTTCTAGAAGACTCTCA+TGG | - | chr3_3:49320642-49320661 | None:intergenic | 35.0% |
| CAATTTATTCCTCCAAAACG+CGG | + | chr3_3:49320786-49320805 | Msa0456030:CDS | 35.0% | |
| ATGAAGAGAAACGAGGATTG+TGG | + | chr3_3:49316999-49317018 | Msa0456030:CDS | 40.0% | |
| GAAGAAAGAGTCAACAACCT+GGG | + | chr3_3:49317021-49317040 | Msa0456030:CDS | 40.0% | |
| CGGTGAATTTGTCAGAATCA+CGG | - | chr3_3:49317472-49317491 | None:intergenic | 40.0% | |
| AAAAATTGAGACAGCCCACA+TGG | + | chr3_3:49317542-49317561 | Msa0456030:intron | 40.0% | |
| CAAAGACCCTTATGAGGAAT+TGG | + | chr3_3:49317623-49317642 | Msa0456030:intron | 40.0% | |
| ! | ATTGGATTTGAGAGTGTGTG+TGG | + | chr3_3:49317641-49317660 | Msa0456030:intron | 40.0% |
| !! | GAAATGAAGGTATTTGTCGG+TGG | + | chr3_3:49317698-49317717 | Msa0456030:intron | 40.0% |
| CGCATGATAAACGAAGCAAT+TGG | - | chr3_3:49317789-49317808 | None:intergenic | 40.0% | |
| TCAATTGAGGTTCCACTTTC+TGG | + | chr3_3:49318245-49318264 | Msa0456030:CDS | 40.0% | |
| TTGATGAGCAAGGAGGAAAA+AGG | + | chr3_3:49318399-49318418 | Msa0456030:intron | 40.0% | |
| ! | AAGACAAAACTTGGTGAGCA+AGG | + | chr3_3:49318436-49318455 | Msa0456030:intron | 40.0% |
| AGAAGACCTGGATAACAGTT+GGG | - | chr3_3:49319161-49319180 | None:intergenic | 40.0% | |
| TAGAAGACCTGGATAACAGT+TGG | - | chr3_3:49319162-49319181 | None:intergenic | 40.0% | |
| GATGGATGTTTAACTGTGTG+GGG | - | chr3_3:49319241-49319260 | None:intergenic | 40.0% | |
| GGATGGATGTTTAACTGTGT+GGG | - | chr3_3:49319242-49319261 | None:intergenic | 40.0% | |
| ! | AGGGGTATAAGGGTAATTTG+GGG | - | chr3_3:49319276-49319295 | None:intergenic | 40.0% |
| TTATGTGCTGAGAGATTGTG+TGG | - | chr3_3:49319349-49319368 | None:intergenic | 40.0% | |
| TAAAATTGACCCTCAAGCCA+AGG | + | chr3_3:49319791-49319810 | Msa0456030:intron | 40.0% | |
| AAAATTGACCCTCAAGCCAA+GGG | + | chr3_3:49319792-49319811 | Msa0456030:intron | 40.0% | |
| CTTGGTAGAATGCTAAGAGA+AGG | + | chr3_3:49320337-49320356 | Msa0456030:CDS | 40.0% | |
| !! | GAAAACATGCTTTGGAAGAC+AGG | - | chr3_3:49320439-49320458 | None:intergenic | 40.0% |
| GATCGTGTGAAAACATGCTT+TGG | - | chr3_3:49320447-49320466 | None:intergenic | 40.0% | |
| CGACATGTCTGTGATGTTTA+TGG | - | chr3_3:49320491-49320510 | None:intergenic | 40.0% | |
| ! | CATGTCGATTGAAGTATGTC+AGG | + | chr3_3:49320504-49320523 | Msa0456030:CDS | 40.0% |
| ! | TTCTAGAAGACTCTCATGGA+TGG | - | chr3_3:49320638-49320657 | None:intergenic | 40.0% |
| ATCTCATCGCTGAAGTCTTT+GGG | + | chr3_3:49320815-49320834 | Msa0456030:CDS | 40.0% | |
| CGATCTTCAATATCCTTTCC+AGG | - | chr3_3:49320854-49320873 | None:intergenic | 40.0% | |
| TGAAGATCGTGCAACTTCAA+AGG | + | chr3_3:49320865-49320884 | Msa0456030:exon | 40.0% | |
| TGCAACTTCAAAGGACAAGA+AGG | + | chr3_3:49320874-49320893 | Msa0456030:three_prime_UTR | 40.0% | |
| GGAAGAAAGAGTCAACAACC+TGG | + | chr3_3:49317020-49317039 | Msa0456030:CDS | 45.0% | |
| AAGAGTCAACAACCTGGGAA+AGG | + | chr3_3:49317026-49317045 | Msa0456030:CDS | 45.0% | |
| ! | AAAGGCGGGAGAGTTTTTGT+TGG | + | chr3_3:49317044-49317063 | Msa0456030:CDS | 45.0% |
| ATTCTCCATTGAGCAAGACG+TGG | - | chr3_3:49317159-49317178 | None:intergenic | 45.0% | |
| GGGATGGATGTTTAACTGTG+TGG | - | chr3_3:49319243-49319262 | None:intergenic | 45.0% | |
| AGTTAAACATCCATCCCTCG+TGG | + | chr3_3:49319246-49319265 | Msa0456030:intron | 45.0% | |
| ! | TAATTTGGGGTTTGCCACGA+GGG | - | chr3_3:49319263-49319282 | None:intergenic | 45.0% |
| AGAGGCAATTGGGAATGTGT+CGG | + | chr3_3:49319590-49319609 | Msa0456030:intron | 45.0% | |
| ! | CTAGTTAACCCTTGGCTTGA+GGG | - | chr3_3:49319803-49319822 | None:intergenic | 45.0% |
| ! | ACTAGTTAACCCTTGGCTTG+AGG | - | chr3_3:49319804-49319823 | None:intergenic | 45.0% |
| TTGTTTGGGCAGCAGTTCAT+TGG | + | chr3_3:49319881-49319900 | Msa0456030:intron | 45.0% | |
| AGTCGGAATCCTGTGTATTC+AGG | + | chr3_3:49319919-49319938 | Msa0456030:intron | 45.0% | |
| GATCTTGATCCAACATCCAC+TGG | - | chr3_3:49319948-49319967 | None:intergenic | 45.0% | |
| TGGTCACCGTAGAAATGAAC+TGG | - | chr3_3:49320117-49320136 | None:intergenic | 45.0% | |
| TCTACGGTGACCAAGATTTG+AGG | + | chr3_3:49320124-49320143 | Msa0456030:intron | 45.0% | |
| CTACGGTGACCAAGATTTGA+GGG | + | chr3_3:49320125-49320144 | Msa0456030:intron | 45.0% | |
| TGGAGAACCTTGCTCCATAT+GGG | + | chr3_3:49320264-49320283 | Msa0456030:CDS | 45.0% | |
| AAATCCTTCACCACCCCATA+TGG | - | chr3_3:49320281-49320300 | None:intergenic | 45.0% | |
| CATTCTACCAAGAGACCCTA+GGG | - | chr3_3:49320329-49320348 | None:intergenic | 45.0% | |
| !! | TGCTTTGGAAGACAGGTGAA+CGG | - | chr3_3:49320432-49320451 | None:intergenic | 45.0% |
| ! | CGACATATCTGACTTGAGAG+AGG | + | chr3_3:49320612-49320631 | Msa0456030:CDS | 45.0% |
| GATCTCATCGCTGAAGTCTT+TGG | + | chr3_3:49320814-49320833 | Msa0456030:CDS | 45.0% | |
| TCTCATCGCTGAAGTCTTTG+GGG | + | chr3_3:49320816-49320835 | Msa0456030:CDS | 45.0% | |
| ! | GAAGTCTTTGGGGAAGTTCT+TGG | + | chr3_3:49320826-49320845 | Msa0456030:CDS | 45.0% |
| CTTCAAAGGACAAGAAGGCT+CGG | + | chr3_3:49320879-49320898 | Msa0456030:three_prime_UTR | 45.0% | |
| AGTCAACAACCTGGGAAAGG+CGG | + | chr3_3:49317029-49317048 | Msa0456030:CDS | 50.0% | |
| ! | GCGGGAGAGTTTTTGTTGGA+AGG | + | chr3_3:49317048-49317067 | Msa0456030:CDS | 50.0% |
| CAACTCCACGTCTTGCTCAA+TGG | + | chr3_3:49317151-49317170 | Msa0456030:intron | 50.0% | |
| ! | TTTGTCGGTGGAGAAGCACA+AGG | + | chr3_3:49317710-49317729 | Msa0456030:CDS | 50.0% |
| !! | CGTGTCGTTAGTTCTGCTCA+TGG | + | chr3_3:49317807-49317826 | Msa0456030:CDS | 50.0% |
| CGAAAAGCTCTCACACATCC+AGG | + | chr3_3:49317834-49317853 | Msa0456030:CDS | 50.0% | |
| ! | GTAAGGGCTTCTAGAAGACC+TGG | - | chr3_3:49319173-49319192 | None:intergenic | 50.0% |
| ! | GTAATTTGGGGTTTGCCACG+AGG | - | chr3_3:49319264-49319283 | None:intergenic | 50.0% |
| TGCTGAGAGATTGTGTGGTG+AGG | - | chr3_3:49319344-49319363 | None:intergenic | 50.0% | |
| CACTGGTGTCCTGAATACAC+AGG | - | chr3_3:49319931-49319950 | None:intergenic | 50.0% | |
| CTGTGTATTCAGGACACCAG+TGG | + | chr3_3:49319929-49319948 | Msa0456030:CDS | 50.0% | |
| TTCAGGACACCAGTGGATGT+TGG | + | chr3_3:49319936-49319955 | Msa0456030:CDS | 50.0% | |
| GTGGAGAACCTTGCTCCATA+TGG | + | chr3_3:49320263-49320282 | Msa0456030:CDS | 50.0% | |
| GGAGAACCTTGCTCCATATG+GGG | + | chr3_3:49320265-49320284 | Msa0456030:CDS | 50.0% | |
| GGGTGGTGAAGGATTTACTC+AGG | + | chr3_3:49320285-49320304 | Msa0456030:CDS | 50.0% | |
| AGATCGAACGCAAAAGCCCT+AGG | + | chr3_3:49320310-49320329 | Msa0456030:CDS | 50.0% | |
| GATCGAACGCAAAAGCCCTA+GGG | + | chr3_3:49320311-49320330 | Msa0456030:CDS | 50.0% | |
| GCATTCTACCAAGAGACCCT+AGG | - | chr3_3:49320330-49320349 | None:intergenic | 50.0% | |
| !! | GCTTTGGAAGACAGGTGAAC+GGG | - | chr3_3:49320431-49320450 | None:intergenic | 50.0% |
| TATTCCTCCAAAACGCGGAC+AGG | + | chr3_3:49320791-49320810 | Msa0456030:CDS | 50.0% | |
| ATTCCTCCAAAACGCGGACA+GGG | + | chr3_3:49320792-49320811 | Msa0456030:CDS | 50.0% | |
| !! | GAAGTTCTTGGTGCCTGGAA+AGG | + | chr3_3:49320838-49320857 | Msa0456030:CDS | 50.0% |
| GTCAACAACCTGGGAAAGGC+GGG | + | chr3_3:49317030-49317049 | Msa0456030:CDS | 55.0% | |
| AAAACTCTCCCGCCTTTCCC+AGG | - | chr3_3:49317041-49317060 | None:intergenic | 55.0% | |
| CGTGGACCCAACTGTTATCC+AGG | + | chr3_3:49319152-49319171 | Msa0456030:intron | 55.0% | |
| GAACCTTGCTCCATATGGGG+TGG | + | chr3_3:49320268-49320287 | Msa0456030:CDS | 55.0% | |
| TCACCACCCCATATGGAGCA+AGG | - | chr3_3:49320274-49320293 | None:intergenic | 55.0% | |
| TGCTCCATATGGGGTGGTGA+AGG | + | chr3_3:49320274-49320293 | Msa0456030:CDS | 55.0% | |
| GCAAAAGCCCTAGGGTCTCT+TGG | + | chr3_3:49320319-49320338 | Msa0456030:CDS | 55.0% | |
| ! | TGAGATCCCTGTCCGCGTTT+TGG | - | chr3_3:49320801-49320820 | None:intergenic | 55.0% |
| !! | TTGGGGAAGTTCTTGGTGCC+TGG | + | chr3_3:49320833-49320852 | Msa0456030:CDS | 55.0% |
| TTGGGGTTTGCCACGAGGGA+TGG | - | chr3_3:49319259-49319278 | None:intergenic | 60.0% | |
| GCTAGCGCTTCTGCATGCAG+CGG | + | chr3_3:49320582-49320601 | Msa0456030:CDS | 60.0% | |
| ! | GATCCCTGTCCGCGTTTTGG+AGG | - | chr3_3:49320798-49320817 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 49316999 | 49321140 | 49316999 | ID=Msa0456030;Name=Msa0456030 |
| chr3_3 | mRNA | 49316999 | 49321140 | 49316999 | ID=Msa0456030-mRNA-1;Parent=Msa0456030;Name=Msa0456030-mRNA-1;_AED=0.21;_eAED=0.26;_QI=0|0.5|0.4|1|1|1|5|273|325 |
| chr3_3 | exon | 49316999 | 49317069 | 49316999 | ID=Msa0456030-mRNA-1:exon:9330;Parent=Msa0456030-mRNA-1 |
| chr3_3 | exon | 49317707 | 49317855 | 49317707 | ID=Msa0456030-mRNA-1:exon:9331;Parent=Msa0456030-mRNA-1 |
| chr3_3 | exon | 49318201 | 49318283 | 49318201 | ID=Msa0456030-mRNA-1:exon:9332;Parent=Msa0456030-mRNA-1 |
| chr3_3 | exon | 49319921 | 49319989 | 49319921 | ID=Msa0456030-mRNA-1:exon:9333;Parent=Msa0456030-mRNA-1 |
| chr3_3 | exon | 49320262 | 49321140 | 49320262 | ID=Msa0456030-mRNA-1:exon:9334;Parent=Msa0456030-mRNA-1 |
| chr3_3 | CDS | 49316999 | 49317069 | 49316999 | ID=Msa0456030-mRNA-1:cds;Parent=Msa0456030-mRNA-1 |
| chr3_3 | CDS | 49317707 | 49317855 | 49317707 | ID=Msa0456030-mRNA-1:cds;Parent=Msa0456030-mRNA-1 |
| chr3_3 | CDS | 49318201 | 49318283 | 49318201 | ID=Msa0456030-mRNA-1:cds;Parent=Msa0456030-mRNA-1 |
| chr3_3 | CDS | 49319921 | 49319989 | 49319921 | ID=Msa0456030-mRNA-1:cds;Parent=Msa0456030-mRNA-1 |
| chr3_3 | CDS | 49320262 | 49320867 | 49320262 | ID=Msa0456030-mRNA-1:cds;Parent=Msa0456030-mRNA-1 |
| chr3_3 | three_prime_UTR | 49320868 | 49321140 | 49320868 | ID=Msa0456030-mRNA-1:three_prime_utr;Parent=Msa0456030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
