AlfalfaGEDB | Msa0486370

M. sativa cultivar zhongmu-4 / Msa0486370

KEGG: K10523
GO: GO:0000151 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0019005 GO:0019222 GO:0019538 GO:0019899 GO:0019941 GO:0030162 GO:0030163 GO:0031461 GO:0031625 GO:0032991 GO:0043161 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0050789 GO:0051171 GO:0051246 GO:0051603 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1990234
PFAM: PF00651.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486370	XP_003600432.1	88.218	331	14	2	7	337	25	330	0.0	582

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486370	sp\|Q680K8\|Y1576_ARATH	63.030	330	93	6	9	337	28	329	1.04e-141	407

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486370	G7IY69	88.218	331	14	2	7	337	25	330	0.0	582

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TFs/TRs:

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Gene ID	Type	Classification
Msa0486370	TR	TRAF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0456030	Msa0486370	0.866275	3.212617e-65	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486370	MtrunA17_Chr3g0103031	88.218	331	14	2	7	337	25	330	0.0	582
Msa0486370	MtrunA17_Chr5g0447111	58.654	312	103	4	25	335	43	329	3.38e-120	349
Msa0486370	MtrunA17_Chr1g0159831	43.976	332	159	4	7	335	23	330	5.41e-93	280
Msa0486370	MtrunA17_Chr3g0124921	45.260	327	150	6	7	331	22	321	4.65e-90	272
Msa0486370	MtrunA17_Chr5g0447191	55.556	180	78	1	154	331	8	187	2.98e-58	186
Msa0486370	MtrunA17_Chr4g0029841	33.175	211	136	2	119	329	71	276	2.66e-30	116
Msa0486370	MtrunA17_Chr7g0259501	27.815	151	94	3	162	299	197	345	1.04e-11	65.5
Msa0486370	MtrunA17_Chr3g0114411	30.108	186	122	4	141	318	66	251	1.07e-11	64.3
Msa0486370	MtrunA17_Chr1g0185861	28.289	152	94	3	162	300	201	350	1.09e-11	65.5

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0486370	AT1G55760.1	63.030	330	93	6	9	337	28	329	1.06e-142	407
Msa0486370	AT1G21780.2	44.681	329	155	4	7	335	23	324	3.45e-95	286
Msa0486370	AT1G21780.1	44.681	329	155	4	7	335	23	324	3.45e-95	286
Msa0486370	AT1G01640.1	30.366	191	128	4	149	336	1	189	1.07e-15	75.1
Msa0486370	AT1G01640.2	30.588	170	113	4	170	336	1	168	3.70e-13	67.8
Msa0486370	AT3G03740.1	34.177	158	87	4	156	297	199	355	2.13e-12	68.2
Msa0486370	AT3G56230.1	29.651	172	116	4	159	326	98	268	2.72e-12	66.6
Msa0486370	AT2G40450.1	32.540	126	74	4	153	267	4	129	1.04e-11	63.9

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Find 74 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCTCCCGGCTTTCCC+AGG	0.488012	3_4:+4383019	None:intergenic
AAATCCTTCACCACCCCATA+TGG	0.411517	3_4:+4381020	None:intergenic
AACTGAAGATGCATTGTATC+CGG	0.473252	3_4:-4380579	Msa0486370:CDS
AATGCTTCGGATGGAAGTAT+AGG	0.510954	3_4:-4380916	Msa0486370:CDS
AGACATCACAATCAATGCTT+CGG	0.520138	3_4:-4380929	Msa0486370:CDS
AGATATGTCGTACTTGTCCG+CGG	0.693511	3_4:+4380699	None:intergenic
AGATCGAACGCAAAAGCCCT+AGG	0.533227	3_4:-4380988	Msa0486370:CDS
AGGATTATCTCTTGTAACAT+TGG	0.466890	3_4:+4382331	None:intergenic
AGTCAACAACCTGGGAAAGC+CGG	0.460730	3_4:-4383028	Msa0486370:CDS
AGTCGGAATCCTGTGCGTTC+AGG	0.483131	3_4:-4381379	Msa0486370:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCAGTCATTCTATTTGGAA+AGG	+	chr3_4:4380293-4380312	None:intergenic	30.0%
AGAGAATCAGTCATTCTATT+TGG	+	chr3_4:4380298-4380317	None:intergenic	30.0%
AAATCTGATCCTTTCAAGAT+TGG	-	chr3_4:4380388-4380407	Msa0486370:three_prime_UTR	30.0%
GATCACAAAACATATGTACT+AGG	+	chr3_4:4380562-4380581	None:intergenic	30.0%
AACATGTGCTAAAAAAAGTG+GGG	-	chr3_4:4380645-4380664	Msa0486370:CDS	30.0%
TCAAATCTATTTAGCCATGT+GGG	+	chr3_4:4380704-4380723	None:intergenic	30.0%
TTCAAATCTATTTAGCCATG+TGG	+	chr3_4:4380705-4380724	None:intergenic	30.0%
TCAAATCCAATTCCTCATAA+GGG	+	chr3_4:4380776-4380795	None:intergenic	30.0%
CTTGTAACATTGGATATTTC+AGG	+	chr3_4:4380900-4380919	None:intergenic	30.0%
AGGATTATCTCTTGTAACAT+TGG	+	chr3_4:4380910-4380929	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_4	gene	4380180	4383080	4380180	ID=Msa0486370;Name=Msa0486370
chr3_4	mRNA	4380180	4383080	4380180	ID=Msa0486370-mRNA-1;Parent=Msa0486370;Name=Msa0486370-mRNA-1;_AED=0.27;_eAED=0.31;_QI=0\|0.5\|0.6\|1\|1\|1\|5\|273\|337
chr3_4	exon	4380180	4381058	4380180	ID=Msa0486370-mRNA-1:exon:1632;Parent=Msa0486370-mRNA-1
chr3_4	exon	4381331	4381399	4381331	ID=Msa0486370-mRNA-1:exon:1631;Parent=Msa0486370-mRNA-1
chr3_4	exon	4381803	4381921	4381803	ID=Msa0486370-mRNA-1:exon:1630;Parent=Msa0486370-mRNA-1
chr3_4	exon	4382261	4382409	4382261	ID=Msa0486370-mRNA-1:exon:1629;Parent=Msa0486370-mRNA-1
chr3_4	exon	4383010	4383080	4383010	ID=Msa0486370-mRNA-1:exon:1628;Parent=Msa0486370-mRNA-1
chr3_4	CDS	4383010	4383080	4383010	ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1
chr3_4	CDS	4382261	4382409	4382261	ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1
chr3_4	CDS	4381803	4381921	4381803	ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1
chr3_4	CDS	4381331	4381399	4381331	ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1
chr3_4	CDS	4380453	4381058	4380453	ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1
chr3_4	three_prime_UTR	4380180	4380452	4380180	ID=Msa0486370-mRNA-1:three_prime_utr;Parent=Msa0486370-mRNA-1

Gene Sequence

>Msa0486370

ATGAAGAGAAACGAGGATTGTGGAAGAAAGAGTCAACAACCTGGGAAAGCCGGGAGAGTTTTTGTTGGAAGGTATTTGTCGGTGGAGAAGCACAAGGTTGTGTTTGTTAAATTGTTTCCTGAAATATCCAATGTTACAAGAGATAATCCTCCAATTGCTTCGTTTATCATGCGTGTAGTTAGTTCTGCTCATGGAAATCGAAAAGCTCTCACACATCCAGAGATAAAAGACAAAGTGATCAAGAGCAATGAAGATTTTGTTTGGTCAATTGAGGTTCCACTTTCTGGAAAATTCATCATTGATGTTGATTTCCTTGATTTGAAGATTGCAGGCCCAGATTCGGAATCCTGTGCGTTCAGGACATCAGTGGATGTTGGATCAAGATCAGACAATTCAGATTTTAAACTGGGTGGAGAACCTTGCTCCATATGGGGTGGTGAAGGATTTACTCAGGAGAGATCGAACGCAAAAGCCCTAGGGTCTCTTGGTAGAATGCTAAGAGAAGGCATTCACACAGACATCACAATCAATGCTTCGGATGGAAGTATAGGAGTTCATAGAGCTCTTCTAGCTGCCCGTTCACCTGTCTTCCAAAGCATGTTTTCACACGATCTTAAAGAGAAAGAGTTGTCAACCATAAACATCACAGACATGTCGATTGAAGTATGTCAGGCTTTTCTCAATTATCTTTACGGGATCATCAAAAATGAAGAATTTCTGACACATAGGCTAGCGCTTCTGCATGCCGCGGACAAGTACGACATATCTGACTTGAGAGAGGCCATCCATGAGAGTCTTCTAGAAGATATTGATACAAAAAATGTACTTGAGAGGCTTCAAAATGCATCACTATATCGGTTGACAAAACTGAAGATGCATTGTATCCGGTATCTTGTTAAATTTGGTAAAATATTTGAAATTCAGGATGATTTCAATTTATTCCTCCAAAACGCGGACAGGGATCTCATCGCTGAAGTCTTTGGGGAAGTTCTTGGTGCCTGGAAAGGATATTGA

Protein sequence

>Msa0486370

MKRNEDCGRKSQQPGKAGRVFVGRYLSVEKHKVVFVKLFPEISNVTRDNPPIASFIMRVVSSAHGNRKALTHPEIKDKVIKSNEDFVWSIEVPLSGKFIIDVDFLDLKIAGPDSESCAFRTSVDVGSRSDNSDFKLGGEPCSIWGGEGFTQERSNAKALGSLGRMLREGIHTDITINASDGSIGVHRALLAARSPVFQSMFSHDLKEKELSTINITDMSIEVCQAFLNYLYGIIKNEEFLTHRLALLHAADKYDISDLREAIHESLLEDIDTKNVLERLQNASLYRLTKLKMHCIRYLVKFGKIFEIQDDFNLFLQNADRDLIAEVFGEVLGAWKGY*