Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486370 | XP_003600432.1 | 88.218 | 331 | 14 | 2 | 7 | 337 | 25 | 330 | 0.0 | 582 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486370 | sp|Q680K8|Y1576_ARATH | 63.030 | 330 | 93 | 6 | 9 | 337 | 28 | 329 | 1.04e-141 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486370 | G7IY69 | 88.218 | 331 | 14 | 2 | 7 | 337 | 25 | 330 | 0.0 | 582 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0486370 | TR | TRAF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0456030 | Msa0486370 | 0.866275 | 3.212617e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486370 | MtrunA17_Chr3g0103031 | 88.218 | 331 | 14 | 2 | 7 | 337 | 25 | 330 | 0.0 | 582 |
| Msa0486370 | MtrunA17_Chr5g0447111 | 58.654 | 312 | 103 | 4 | 25 | 335 | 43 | 329 | 3.38e-120 | 349 |
| Msa0486370 | MtrunA17_Chr1g0159831 | 43.976 | 332 | 159 | 4 | 7 | 335 | 23 | 330 | 5.41e-93 | 280 |
| Msa0486370 | MtrunA17_Chr3g0124921 | 45.260 | 327 | 150 | 6 | 7 | 331 | 22 | 321 | 4.65e-90 | 272 |
| Msa0486370 | MtrunA17_Chr5g0447191 | 55.556 | 180 | 78 | 1 | 154 | 331 | 8 | 187 | 2.98e-58 | 186 |
| Msa0486370 | MtrunA17_Chr4g0029841 | 33.175 | 211 | 136 | 2 | 119 | 329 | 71 | 276 | 2.66e-30 | 116 |
| Msa0486370 | MtrunA17_Chr7g0259501 | 27.815 | 151 | 94 | 3 | 162 | 299 | 197 | 345 | 1.04e-11 | 65.5 |
| Msa0486370 | MtrunA17_Chr3g0114411 | 30.108 | 186 | 122 | 4 | 141 | 318 | 66 | 251 | 1.07e-11 | 64.3 |
| Msa0486370 | MtrunA17_Chr1g0185861 | 28.289 | 152 | 94 | 3 | 162 | 300 | 201 | 350 | 1.09e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0486370 | AT1G55760.1 | 63.030 | 330 | 93 | 6 | 9 | 337 | 28 | 329 | 1.06e-142 | 407 |
| Msa0486370 | AT1G21780.2 | 44.681 | 329 | 155 | 4 | 7 | 335 | 23 | 324 | 3.45e-95 | 286 |
| Msa0486370 | AT1G21780.1 | 44.681 | 329 | 155 | 4 | 7 | 335 | 23 | 324 | 3.45e-95 | 286 |
| Msa0486370 | AT1G01640.1 | 30.366 | 191 | 128 | 4 | 149 | 336 | 1 | 189 | 1.07e-15 | 75.1 |
| Msa0486370 | AT1G01640.2 | 30.588 | 170 | 113 | 4 | 170 | 336 | 1 | 168 | 3.70e-13 | 67.8 |
| Msa0486370 | AT3G03740.1 | 34.177 | 158 | 87 | 4 | 156 | 297 | 199 | 355 | 2.13e-12 | 68.2 |
| Msa0486370 | AT3G56230.1 | 29.651 | 172 | 116 | 4 | 159 | 326 | 98 | 268 | 2.72e-12 | 66.6 |
| Msa0486370 | AT2G40450.1 | 32.540 | 126 | 74 | 4 | 153 | 267 | 4 | 129 | 1.04e-11 | 63.9 |
Find 74 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTGAGGTTCCACTTTC+TGG | 0.064092 | 3_4:-4381855 | Msa0486370:CDS |
| CTTGTAACATTGGATATTTC+AGG | 0.153912 | 3_4:+4382341 | None:intergenic |
| ATCCGGTATCTTGTTAAATT+TGG | 0.167989 | 3_4:-4380562 | Msa0486370:CDS |
| TGGTAAAATATTTGAAATTC+AGG | 0.193894 | 3_4:-4380542 | Msa0486370:CDS |
| CGACATGTCTGTGATGTTTA+TGG | 0.202175 | 3_4:+4380810 | None:intergenic |
| ATCTCATCGCTGAAGTCTTT+GGG | 0.249673 | 3_4:-4380483 | Msa0486370:CDS |
| GATCTCATCGCTGAAGTCTT+TGG | 0.302318 | 3_4:-4380484 | Msa0486370:CDS |
| GAAGTCTTTGGGGAAGTTCT+TGG | 0.305595 | 3_4:-4380472 | Msa0486370:CDS |
| TTCCTTGATTTGAAGATTGC+AGG | 0.320978 | 3_4:-4381810 | Msa0486370:CDS |
| TGAGATCCCTGTCCGCGTTT+TGG | 0.322271 | 3_4:+4380500 | None:intergenic |
| TTGGGGAAGTTCTTGGTGCC+TGG | 0.360323 | 3_4:-4380465 | Msa0486370:CDS |
| TTCAAAATGCATCACTATAT+CGG | 0.365062 | 3_4:-4380609 | Msa0486370:CDS |
| CGATCTTCAATATCCTTTCC+AGG | 0.370344 | 3_4:+4380447 | None:intergenic |
| GATCGTGTGAAAACATGCTT+TGG | 0.410502 | 3_4:+4380854 | None:intergenic |
| AAATCCTTCACCACCCCATA+TGG | 0.411517 | 3_4:+4381020 | None:intergenic |
| GTGGAGAACCTTGCTCCATA+TGG | 0.412309 | 3_4:-4381035 | Msa0486370:CDS |
| TATTCCTCCAAAACGCGGAC+AGG | 0.453494 | 3_4:-4380507 | Msa0486370:CDS |
| AGTCAACAACCTGGGAAAGC+CGG | 0.460730 | 3_4:-4383028 | Msa0486370:CDS |
| AGGATTATCTCTTGTAACAT+TGG | 0.466890 | 3_4:+4382331 | None:intergenic |
| TACCAAATTTAACAAGATAC+CGG | 0.470201 | 3_4:+4380560 | None:intergenic |
| AACTGAAGATGCATTGTATC+CGG | 0.473252 | 3_4:-4380579 | Msa0486370:CDS |
| TGGAGAACCTTGCTCCATAT+GGG | 0.474713 | 3_4:-4381034 | Msa0486370:CDS |
| GCAAAAGCCCTAGGGTCTCT+TGG | 0.476148 | 3_4:-4380979 | Msa0486370:CDS |
| CGAAAAGCTCTCACACATCC+AGG | 0.477842 | 3_4:-4382260 | Msa0486370:intron |
| GTCAACAACCTGGGAAAGCC+GGG | 0.479947 | 3_4:-4383027 | Msa0486370:CDS |
| CATGTCGATTGAAGTATGTC+AGG | 0.482314 | 3_4:-4380794 | Msa0486370:CDS |
| AGTCGGAATCCTGTGCGTTC+AGG | 0.483131 | 3_4:-4381379 | Msa0486370:CDS |
| AAAACTCTCCCGGCTTTCCC+AGG | 0.488012 | 3_4:+4383019 | None:intergenic |
| GCTTTGGAAGACAGGTGAAC+GGG | 0.489275 | 3_4:+4380870 | None:intergenic |
| TTATTTGAATTTGTTGTGAA+AGG | 0.491559 | 3_4:-4380369 | Msa0486370:three_prime_UTR |
| TGCTCCATATGGGGTGGTGA+AGG | 0.497886 | 3_4:-4381024 | Msa0486370:CDS |
| GGCCTGCAATCTTCAAATCA+AGG | 0.500364 | 3_4:+4381808 | None:intergenic |
| AATGCTTCGGATGGAAGTAT+AGG | 0.510954 | 3_4:-4380916 | Msa0486370:CDS |
| AGACATCACAATCAATGCTT+CGG | 0.520138 | 3_4:-4380929 | Msa0486370:CDS |
| GCATTCTACCAAGAGACCCT+AGG | 0.531172 | 3_4:+4380971 | None:intergenic |
| AGATCGAACGCAAAAGCCCT+AGG | 0.533227 | 3_4:-4380988 | Msa0486370:CDS |
| GAAGTTCTTGGTGCCTGGAA+AGG | 0.537759 | 3_4:-4380460 | Msa0486370:CDS |
| GAAAACATGCTTTGGAAGAC+AGG | 0.538730 | 3_4:+4380862 | None:intergenic |
| CGTGTAGTTAGTTCTGCTCA+TGG | 0.539151 | 3_4:-4382287 | Msa0486370:CDS |
| CGCATGATAAACGAAGCAAT+TGG | 0.543907 | 3_4:+4382308 | None:intergenic |
| CTGTAAACAATACTACTATG+TGG | 0.544456 | 3_4:+4380255 | None:intergenic |
| TTCAGGACATCAGTGGATGT+TGG | 0.551858 | 3_4:-4381362 | Msa0486370:CDS |
| ATGAAGAATTTCTGACACAT+AGG | 0.551928 | 3_4:-4380738 | Msa0486370:CDS |
| CTTCAAAGGACAAGAAGGCT+CGG | 0.552850 | 3_4:-4380419 | Msa0486370:three_prime_UTR |
| TGAAGATCGTGCAACTTCAA+AGG | 0.560576 | 3_4:-4380433 | Msa0486370:three_prime_UTR |
| ATCACAATCAATGCTTCGGA+TGG | 0.568005 | 3_4:-4380925 | Msa0486370:CDS |
| ATGAAGAGAAACGAGGATTG+TGG | 0.569942 | 3_4:-4383058 | Msa0486370:CDS |
| CATTCTACCAAGAGACCCTA+GGG | 0.576970 | 3_4:+4380972 | None:intergenic |
| GGAGAACCTTGCTCCATATG+GGG | 0.579524 | 3_4:-4381033 | Msa0486370:CDS |
| TATCTTCTAGAAGACTCTCA+TGG | 0.579860 | 3_4:+4380659 | None:intergenic |
| ATTCCTCCAAAACGCGGACA+GGG | 0.581021 | 3_4:-4380506 | Msa0486370:CDS |
| ATGATAAACGAAGCAATTGG+AGG | 0.581597 | 3_4:+4382311 | None:intergenic |
| TGCAACTTCAAAGGACAAGA+AGG | 0.589856 | 3_4:-4380424 | Msa0486370:three_prime_UTR |
| TTCTAGAAGACTCTCATGGA+TGG | 0.591651 | 3_4:+4380663 | None:intergenic |
| CTGTGCGTTCAGGACATCAG+TGG | 0.595435 | 3_4:-4381369 | Msa0486370:CDS |
| GCATATGATATATATGTACA+AGG | 0.598546 | 3_4:+4380291 | None:intergenic |
| TCTCATCGCTGAAGTCTTTG+GGG | 0.603546 | 3_4:-4380482 | Msa0486370:CDS |
| CACTGATGTCCTGAACGCAC+AGG | 0.608861 | 3_4:+4381370 | None:intergenic |
| GGGTGGTGAAGGATTTACTC+AGG | 0.609959 | 3_4:-4381013 | Msa0486370:CDS |
| TGTGAAATGAAGGTATTTGT+CGG | 0.609961 | 3_4:-4382399 | Msa0486370:intron |
| GGAAGAAAGAGTCAACAACC+TGG | 0.613447 | 3_4:-4383037 | Msa0486370:CDS |
| CTTGGTAGAATGCTAAGAGA+AGG | 0.615271 | 3_4:-4380961 | Msa0486370:CDS |
| TGCTTTGGAAGACAGGTGAA+CGG | 0.624572 | 3_4:+4380869 | None:intergenic |
| TCACCACCCCATATGGAGCA+AGG | 0.646739 | 3_4:+4381027 | None:intergenic |
| CAATTTATTCCTCCAAAACG+CGG | 0.648608 | 3_4:-4380512 | Msa0486370:CDS |
| GAAGAAAGAGTCAACAACCT+GGG | 0.649051 | 3_4:-4383036 | Msa0486370:CDS |
| GATCGAACGCAAAAGCCCTA+GGG | 0.649072 | 3_4:-4380987 | Msa0486370:CDS |
| CGACATATCTGACTTGAGAG+AGG | 0.668882 | 3_4:-4380686 | Msa0486370:CDS |
| TTTGTCGGTGGAGAAGCACA+AGG | 0.689916 | 3_4:-4382384 | Msa0486370:CDS |
| AGATATGTCGTACTTGTCCG+CGG | 0.693511 | 3_4:+4380699 | None:intergenic |
| GAAATGAAGGTATTTGTCGG+TGG | 0.696589 | 3_4:-4382396 | Msa0486370:intron |
| GCTAGCGCTTCTGCATGCCG+CGG | 0.708745 | 3_4:-4380716 | Msa0486370:CDS |
| GAACCTTGCTCCATATGGGG+TGG | 0.727934 | 3_4:-4381030 | Msa0486370:CDS |
| GATTCATATGAAGAGAAACG+AGG | 0.748404 | 3_4:-4383065 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTATTATTGATTTTATG+TGG | - | chr3_4:4381480-4381499 | Msa0486370:intron | 10.0% |
| !!! | GTTTTGTATATTATAAAGTT+TGG | - | chr3_4:4380738-4380757 | Msa0486370:CDS | 15.0% |
| !!! | AATTTTCGATACATTATTAT+AGG | - | chr3_4:4382180-4382199 | Msa0486370:intron | 15.0% |
| !!! | ATTTTCGATACATTATTATA+GGG | - | chr3_4:4382181-4382200 | Msa0486370:intron | 15.0% |
| !!! | TGTTATTTCAATTTTTCTTG+TGG | - | chr3_4:4381029-4381048 | Msa0486370:CDS | 20.0% |
| !! | ATTGAGAAAACAGTAAAAAA+TGG | + | chr3_4:4381241-4381260 | None:intergenic | 20.0% |
| !!! | GTTTAGCTAAAATCAATTTT+GGG | - | chr3_4:4381550-4381569 | Msa0486370:intron | 20.0% |
| !!! | TTTAGCTAAAATCAATTTTG+GGG | - | chr3_4:4381551-4381570 | Msa0486370:intron | 20.0% |
| !! | AAATGCTCATGATTATAAAA+GGG | + | chr3_4:4381598-4381617 | None:intergenic | 20.0% |
| !! | TAAATGCTCATGATTATAAA+AGG | + | chr3_4:4381599-4381618 | None:intergenic | 20.0% |
| !! | ATAGATTATCTTAATCAAAC+AGG | - | chr3_4:4381671-4381690 | Msa0486370:intron | 20.0% |
| !! | TAGATTATCTTAATCAAACA+GGG | - | chr3_4:4381672-4381691 | Msa0486370:intron | 20.0% |
| !!! | ATTGTTGATAAAGTTTGTTT+GGG | - | chr3_4:4381807-4381826 | Msa0486370:CDS | 20.0% |
| !!! | ATTATAGCATTGATAATTGT+TGG | + | chr3_4:4381994-4382013 | None:intergenic | 20.0% |
| !!! | TGGTAAAATATTTGAAATTC+AGG | - | chr3_4:4382696-4382715 | Msa0486370:intron | 20.0% |
| !!! | TTATTTGAATTTGTTGTGAA+AGG | - | chr3_4:4382869-4382888 | Msa0486370:intron | 20.0% |
| ! | TAAACATGTGCTAAAAAAAG+TGG | - | chr3_4:4380643-4380662 | Msa0486370:CDS | 25.0% |
| ! | AAACATGTGCTAAAAAAAGT+GGG | - | chr3_4:4380644-4380663 | Msa0486370:CDS | 25.0% |
| !!! | AAATCAGAATTTTGATTACC+TGG | + | chr3_4:4380999-4381018 | None:intergenic | 25.0% |
| !!! | AATTTTAATGTCCTAATGCA+TGG | - | chr3_4:4381152-4381171 | Msa0486370:intron | 25.0% |
| ! | GAAATTAATCAACAGAAGAA+TGG | + | chr3_4:4381300-4381319 | None:intergenic | 25.0% |
| ! | TGCAAATGTTAATCATTTAG+AGG | - | chr3_4:4381510-4381529 | Msa0486370:intron | 25.0% |
| ! | TTAATCATTTAGAGGCAATT+GGG | - | chr3_4:4381518-4381537 | Msa0486370:intron | 25.0% |
| !! | GGTTTAGCTAAAATCAATTT+TGG | - | chr3_4:4381549-4381568 | Msa0486370:intron | 25.0% |
| !!! | ATCAATTTTGGGGTAATAAT+TGG | - | chr3_4:4381561-4381580 | Msa0486370:intron | 25.0% |
| ! | AATGCTCATGATTATAAAAG+GGG | + | chr3_4:4381597-4381616 | None:intergenic | 25.0% |
| ! | AGATTATCTTAATCAAACAG+GGG | - | chr3_4:4381673-4381692 | Msa0486370:intron | 25.0% |
| ! | GATTTAACTAATTAACCCTT+TGG | + | chr3_4:4381750-4381769 | None:intergenic | 25.0% |
| ! | ACAAACTTTATCAACAATGT+CGG | + | chr3_4:4381805-4381824 | None:intergenic | 25.0% |
| !! | CATTGTTGATAAAGTTTGTT+TGG | - | chr3_4:4381806-4381825 | Msa0486370:CDS | 25.0% |
| !! | AGACAATTCAGATTTTAAAC+TGG | - | chr3_4:4381908-4381927 | Msa0486370:intron | 25.0% |
| ! | GAAAATTAGCATTTCAAACA+AGG | + | chr3_4:4382167-4382186 | None:intergenic | 25.0% |
| !! | GCTTTTCTCAATTATCTTTA+CGG | - | chr3_4:4382466-4382485 | Msa0486370:intron | 25.0% |
| !! | CTTTTCTCAATTATCTTTAC+GGG | - | chr3_4:4382467-4382486 | Msa0486370:intron | 25.0% |
| ! | ATACAAAAAATGTACTTGAG+AGG | - | chr3_4:4382605-4382624 | Msa0486370:intron | 25.0% |
| ! | TTCAAAATGCATCACTATAT+CGG | - | chr3_4:4382629-4382648 | Msa0486370:intron | 25.0% |
| ! | TACCAAATTTAACAAGATAC+CGG | + | chr3_4:4382681-4382700 | None:intergenic | 25.0% |
| ! | GCATATGATATATATGTACA+AGG | + | chr3_4:4382950-4382969 | None:intergenic | 25.0% |
| !! | GTTTTTGTTGGAAGGTATAT+TGG | - | chr3_4:4380237-4380256 | Msa0486370:three_prime_UTR | 30.0% |
| ATCAGTCATTCTATTTGGAA+AGG | + | chr3_4:4380293-4380312 | None:intergenic | 30.0% | |
| AGAGAATCAGTCATTCTATT+TGG | + | chr3_4:4380298-4380317 | None:intergenic | 30.0% | |
| AAATCTGATCCTTTCAAGAT+TGG | - | chr3_4:4380388-4380407 | Msa0486370:three_prime_UTR | 30.0% | |
| !! | ACACACATCATTTTTAATGC+AGG | - | chr3_4:4380529-4380548 | Msa0486370:CDS | 30.0% |
| GATCACAAAACATATGTACT+AGG | + | chr3_4:4380562-4380581 | None:intergenic | 30.0% | |
| AACATGTGCTAAAAAAAGTG+GGG | - | chr3_4:4380645-4380664 | Msa0486370:CDS | 30.0% | |
| TCAAATCTATTTAGCCATGT+GGG | + | chr3_4:4380704-4380723 | None:intergenic | 30.0% | |
| TTCAAATCTATTTAGCCATG+TGG | + | chr3_4:4380705-4380724 | None:intergenic | 30.0% | |
| TCAAATCCAATTCCTCATAA+GGG | + | chr3_4:4380776-4380795 | None:intergenic | 30.0% | |
| !! | TTTTGTTGTGTGTGAAATGA+AGG | - | chr3_4:4380829-4380848 | Msa0486370:CDS | 30.0% |
| !! | TGTGAAATGAAGGTATTTGT+CGG | - | chr3_4:4380839-4380858 | Msa0486370:CDS | 30.0% |
| CTTGTAACATTGGATATTTC+AGG | + | chr3_4:4380900-4380919 | None:intergenic | 30.0% | |
| AGGATTATCTCTTGTAACAT+TGG | + | chr3_4:4380910-4380929 | None:intergenic | 30.0% | |
| ! | GAGTTTAATTTCCATGCATT+AGG | + | chr3_4:4381166-4381185 | None:intergenic | 30.0% |
| ! | AGAGCAATGAAGATTTTGTT+TGG | - | chr3_4:4381360-4381379 | Msa0486370:CDS | 30.0% |
| !! | AGATTTTGTTTGGTCAATTG+AGG | - | chr3_4:4381370-4381389 | Msa0486370:CDS | 30.0% |
| ! | ATGATGAATTTTCCAGAAAG+TGG | + | chr3_4:4381398-4381417 | None:intergenic | 30.0% |
| AGTCTTAAGCATATACATCT+GGG | + | chr3_4:4381454-4381473 | None:intergenic | 30.0% | |
| ! | TAGTCTTAAGCATATACATC+TGG | + | chr3_4:4381455-4381474 | None:intergenic | 30.0% |
| GTTAATCATTTAGAGGCAAT+TGG | - | chr3_4:4381517-4381536 | Msa0486370:intron | 30.0% | |
| TAATCATTGTGATTCACCAT+TGG | + | chr3_4:4381645-4381664 | None:intergenic | 30.0% | |
| CAAAATCCAGTTCATTTCTA+CGG | - | chr3_4:4382048-4382067 | Msa0486370:intron | 30.0% | |
| ATAATGATTCCCTCAAATCT+TGG | + | chr3_4:4382077-4382096 | None:intergenic | 30.0% | |
| TTCGATACATTATTATAGGG+TGG | - | chr3_4:4382184-4382203 | Msa0486370:intron | 30.0% | |
| ATGAAGAATTTCTGACACAT+AGG | - | chr3_4:4382500-4382519 | Msa0486370:intron | 30.0% | |
| ATCCGGTATCTTGTTAAATT+TGG | - | chr3_4:4382676-4382695 | Msa0486370:intron | 30.0% | |
| CTGTAAACAATACTACTATG+TGG | + | chr3_4:4382986-4383005 | None:intergenic | 30.0% | |
| AAAGTGCAACTGTGATTTCA+TGG | + | chr3_4:4380270-4380289 | None:intergenic | 35.0% | |
| TCAATGGAGAATCGATAACT+TGG | - | chr3_4:4380348-4380367 | Msa0486370:three_prime_UTR | 35.0% | |
| ATCCTTTCAAGATTGGTATC+TGG | - | chr3_4:4380395-4380414 | Msa0486370:three_prime_UTR | 35.0% | |
| TTCCAGATACCAATCTTGAA+AGG | + | chr3_4:4380400-4380419 | None:intergenic | 35.0% | |
| ! | TCAAGATTGGTATCTGGAAT+TGG | - | chr3_4:4380401-4380420 | Msa0486370:three_prime_UTR | 35.0% |
| TAAAAAAAGTGGGGTTGTGT+TGG | - | chr3_4:4380654-4380673 | Msa0486370:CDS | 35.0% | |
| !!! | TTTTTTGCAAGACCCTTATG+AGG | - | chr3_4:4380761-4380780 | Msa0486370:CDS | 35.0% |
| CTCAAATCCAATTCCTCATA+AGG | + | chr3_4:4380777-4380796 | None:intergenic | 35.0% | |
| ATGATAAACGAAGCAATTGG+AGG | + | chr3_4:4380930-4380949 | None:intergenic | 35.0% | |
| TCTTGTGGATAGAGAACTAT+TGG | - | chr3_4:4381044-4381063 | Msa0486370:intron | 35.0% | |
| ! | TTCCTTGATTTGAAGATTGC+AGG | - | chr3_4:4381428-4381447 | Msa0486370:intron | 35.0% |
| ! | CCATTGGTGATTATGAACAA+AGG | + | chr3_4:4381629-4381648 | None:intergenic | 35.0% |
| CCTTTGTTCATAATCACCAA+TGG | - | chr3_4:4381626-4381645 | Msa0486370:intron | 35.0% | |
| TTATCTTAATCAAACAGGGG+AGG | - | chr3_4:4381676-4381695 | Msa0486370:intron | 35.0% | |
| AAAATTAACCCTCAAGCCAA+AGG | - | chr3_4:4381731-4381750 | Msa0486370:intron | 35.0% | |
| AAATTAACCCTCAAGCCAAA+GGG | - | chr3_4:4381732-4381751 | Msa0486370:intron | 35.0% | |
| !! | TAATTAACCCTTTGGCTTGA+GGG | + | chr3_4:4381742-4381761 | None:intergenic | 35.0% |
| ACAATGTCGGAGATTCAAAT+TGG | + | chr3_4:4381792-4381811 | None:intergenic | 35.0% | |
| ! | AAATCAGCATGTTTTCTGCA+CGG | - | chr3_4:4381956-4381975 | Msa0486370:intron | 35.0% |
| ! | CGTAGAAATGAACTGGATTT+TGG | + | chr3_4:4382050-4382069 | None:intergenic | 35.0% |
| AGACATCACAATCAATGCTT+CGG | - | chr3_4:4382309-4382328 | Msa0486370:CDS | 35.0% | |
| ! | TATCTTCTAGAAGACTCTCA+TGG | + | chr3_4:4382582-4382601 | None:intergenic | 35.0% |
| AACTGAAGATGCATTGTATC+CGG | - | chr3_4:4382659-4382678 | Msa0486370:intron | 35.0% | |
| CAATTTATTCCTCCAAAACG+CGG | - | chr3_4:4382726-4382745 | Msa0486370:intron | 35.0% | |
| ATGAAGAGAAACGAGGATTG+TGG | - | chr3_4:4380180-4380199 | Msa0486370:three_prime_UTR | 40.0% | |
| GAAGAAAGAGTCAACAACCT+GGG | - | chr3_4:4380202-4380221 | Msa0486370:three_prime_UTR | 40.0% | |
| CAGCGAATTTGTCAGAATCA+CGG | + | chr3_4:4380618-4380637 | None:intergenic | 40.0% | |
| AAAAATTGAGACAGCCCACA+TGG | - | chr3_4:4380687-4380706 | Msa0486370:CDS | 40.0% | |
| ! | ATTGGATTTGAGAGTGTGTG+TGG | - | chr3_4:4380785-4380804 | Msa0486370:CDS | 40.0% |
| !! | GAAATGAAGGTATTTGTCGG+TGG | - | chr3_4:4380842-4380861 | Msa0486370:CDS | 40.0% |
| CGCATGATAAACGAAGCAAT+TGG | + | chr3_4:4380933-4380952 | None:intergenic | 40.0% | |
| TCAATTGAGGTTCCACTTTC+TGG | - | chr3_4:4381383-4381402 | Msa0486370:intron | 40.0% | |
| !! | CTAATTAACCCTTTGGCTTG+AGG | + | chr3_4:4381743-4381762 | None:intergenic | 40.0% |
| CTTGGTAGAATGCTAAGAGA+AGG | - | chr3_4:4382277-4382296 | Msa0486370:CDS | 40.0% | |
| ATCACAATCAATGCTTCGGA+TGG | - | chr3_4:4382313-4382332 | Msa0486370:CDS | 40.0% | |
| ! | AATGCTTCGGATGGAAGTAT+AGG | - | chr3_4:4382322-4382341 | Msa0486370:CDS | 40.0% |
| !! | GAAAACATGCTTTGGAAGAC+AGG | + | chr3_4:4382379-4382398 | None:intergenic | 40.0% |
| GATCGTGTGAAAACATGCTT+TGG | + | chr3_4:4382387-4382406 | None:intergenic | 40.0% | |
| CGACATGTCTGTGATGTTTA+TGG | + | chr3_4:4382431-4382450 | None:intergenic | 40.0% | |
| ! | CATGTCGATTGAAGTATGTC+AGG | - | chr3_4:4382444-4382463 | Msa0486370:intron | 40.0% |
| ! | TTCTAGAAGACTCTCATGGA+TGG | + | chr3_4:4382578-4382597 | None:intergenic | 40.0% |
| ATCTCATCGCTGAAGTCTTT+GGG | - | chr3_4:4382755-4382774 | Msa0486370:intron | 40.0% | |
| CGATCTTCAATATCCTTTCC+AGG | + | chr3_4:4382794-4382813 | None:intergenic | 40.0% | |
| TGAAGATCGTGCAACTTCAA+AGG | - | chr3_4:4382805-4382824 | Msa0486370:intron | 40.0% | |
| TGCAACTTCAAAGGACAAGA+AGG | - | chr3_4:4382814-4382833 | Msa0486370:intron | 40.0% | |
| GGAAGAAAGAGTCAACAACC+TGG | - | chr3_4:4380201-4380220 | Msa0486370:three_prime_UTR | 45.0% | |
| ! | AAAGCCGGGAGAGTTTTTGT+TGG | - | chr3_4:4380225-4380244 | Msa0486370:three_prime_UTR | 45.0% |
| CCTTCCAACAAAAACTCTCC+CGG | + | chr3_4:4380232-4380251 | None:intergenic | 45.0% | |
| ATTCTCCATTGAGCAAGACG+TGG | + | chr3_4:4380340-4380359 | None:intergenic | 45.0% | |
| GCAAGACCCTTATGAGGAAT+TGG | - | chr3_4:4380767-4380786 | Msa0486370:CDS | 45.0% | |
| !! | CGTGTAGTTAGTTCTGCTCA+TGG | - | chr3_4:4380951-4380970 | Msa0486370:CDS | 45.0% |
| GGCCTGCAATCTTCAAATCA+AGG | + | chr3_4:4381433-4381452 | None:intergenic | 45.0% | |
| AGAGGCAATTGGGAATGTGT+CGG | - | chr3_4:4381528-4381547 | Msa0486370:intron | 45.0% | |
| TTGTTTGGGCAGCAGTTCAT+TGG | - | chr3_4:4381821-4381840 | Msa0486370:CDS | 45.0% | |
| !!! | GGATTTTGATTGCCTGCAGT+CGG | - | chr3_4:4381842-4381861 | Msa0486370:CDS | 45.0% |
| TTCAGGACATCAGTGGATGT+TGG | - | chr3_4:4381876-4381895 | Msa0486370:CDS | 45.0% | |
| TAATTGCAAGAACGCACGAG+AGG | - | chr3_4:4382010-4382029 | Msa0486370:intron | 45.0% | |
| TGGTCACCGTAGAAATGAAC+TGG | + | chr3_4:4382057-4382076 | None:intergenic | 45.0% | |
| TCTACGGTGACCAAGATTTG+AGG | - | chr3_4:4382064-4382083 | Msa0486370:intron | 45.0% | |
| CTACGGTGACCAAGATTTGA+GGG | - | chr3_4:4382065-4382084 | Msa0486370:intron | 45.0% | |
| TGGAGAACCTTGCTCCATAT+GGG | - | chr3_4:4382204-4382223 | Msa0486370:intron | 45.0% | |
| AAATCCTTCACCACCCCATA+TGG | + | chr3_4:4382221-4382240 | None:intergenic | 45.0% | |
| CATTCTACCAAGAGACCCTA+GGG | + | chr3_4:4382269-4382288 | None:intergenic | 45.0% | |
| !! | TGCTTTGGAAGACAGGTGAA+CGG | + | chr3_4:4382372-4382391 | None:intergenic | 45.0% |
| AGATATGTCGTACTTGTCCG+CGG | + | chr3_4:4382542-4382561 | None:intergenic | 45.0% | |
| ! | CGACATATCTGACTTGAGAG+AGG | - | chr3_4:4382552-4382571 | Msa0486370:intron | 45.0% |
| GATCTCATCGCTGAAGTCTT+TGG | - | chr3_4:4382754-4382773 | Msa0486370:intron | 45.0% | |
| TCTCATCGCTGAAGTCTTTG+GGG | - | chr3_4:4382756-4382775 | Msa0486370:intron | 45.0% | |
| ! | GAAGTCTTTGGGGAAGTTCT+TGG | - | chr3_4:4382766-4382785 | Msa0486370:intron | 45.0% |
| CTTCAAAGGACAAGAAGGCT+CGG | - | chr3_4:4382819-4382838 | Msa0486370:intron | 45.0% | |
| AGTCAACAACCTGGGAAAGC+CGG | - | chr3_4:4380210-4380229 | Msa0486370:three_prime_UTR | 50.0% | |
| ! | CCGGGAGAGTTTTTGTTGGA+AGG | - | chr3_4:4380229-4380248 | Msa0486370:three_prime_UTR | 50.0% |
| CAACTCCACGTCTTGCTCAA+TGG | - | chr3_4:4380332-4380351 | Msa0486370:three_prime_UTR | 50.0% | |
| ! | TTTGTCGGTGGAGAAGCACA+AGG | - | chr3_4:4380854-4380873 | Msa0486370:CDS | 50.0% |
| CGAAAAGCTCTCACACATCC+AGG | - | chr3_4:4380978-4380997 | Msa0486370:CDS | 50.0% | |
| GTGGAGAACCTTGCTCCATA+TGG | - | chr3_4:4382203-4382222 | Msa0486370:intron | 50.0% | |
| GGAGAACCTTGCTCCATATG+GGG | - | chr3_4:4382205-4382224 | Msa0486370:intron | 50.0% | |
| GGGTGGTGAAGGATTTACTC+AGG | - | chr3_4:4382225-4382244 | Msa0486370:intron | 50.0% | |
| AGATCGAACGCAAAAGCCCT+AGG | - | chr3_4:4382250-4382269 | Msa0486370:intron | 50.0% | |
| GATCGAACGCAAAAGCCCTA+GGG | - | chr3_4:4382251-4382270 | Msa0486370:intron | 50.0% | |
| GCATTCTACCAAGAGACCCT+AGG | + | chr3_4:4382270-4382289 | None:intergenic | 50.0% | |
| !! | GCTTTGGAAGACAGGTGAAC+GGG | + | chr3_4:4382371-4382390 | None:intergenic | 50.0% |
| TATTCCTCCAAAACGCGGAC+AGG | - | chr3_4:4382731-4382750 | Msa0486370:intron | 50.0% | |
| ATTCCTCCAAAACGCGGACA+GGG | - | chr3_4:4382732-4382751 | Msa0486370:intron | 50.0% | |
| !! | GAAGTTCTTGGTGCCTGGAA+AGG | - | chr3_4:4382778-4382797 | Msa0486370:intron | 50.0% |
| GTCAACAACCTGGGAAAGCC+GGG | - | chr3_4:4380211-4380230 | Msa0486370:three_prime_UTR | 55.0% | |
| AAAACTCTCCCGGCTTTCCC+AGG | + | chr3_4:4380222-4380241 | None:intergenic | 55.0% | |
| AGTCGGAATCCTGTGCGTTC+AGG | - | chr3_4:4381859-4381878 | Msa0486370:CDS | 55.0% | |
| CACTGATGTCCTGAACGCAC+AGG | + | chr3_4:4381871-4381890 | None:intergenic | 55.0% | |
| CTGTGCGTTCAGGACATCAG+TGG | - | chr3_4:4381869-4381888 | Msa0486370:CDS | 55.0% | |
| GAACCTTGCTCCATATGGGG+TGG | - | chr3_4:4382208-4382227 | Msa0486370:intron | 55.0% | |
| TCACCACCCCATATGGAGCA+AGG | + | chr3_4:4382214-4382233 | None:intergenic | 55.0% | |
| TGCTCCATATGGGGTGGTGA+AGG | - | chr3_4:4382214-4382233 | Msa0486370:intron | 55.0% | |
| GCAAAAGCCCTAGGGTCTCT+TGG | - | chr3_4:4382259-4382278 | Msa0486370:intron | 55.0% | |
| ! | TGAGATCCCTGTCCGCGTTT+TGG | + | chr3_4:4382741-4382760 | None:intergenic | 55.0% |
| !! | TTGGGGAAGTTCTTGGTGCC+TGG | - | chr3_4:4382773-4382792 | Msa0486370:intron | 55.0% |
| ACGCACAGGATTCCGACTGC+AGG | + | chr3_4:4381857-4381876 | None:intergenic | 60.0% | |
| ! | GATCCCTGTCCGCGTTTTGG+AGG | + | chr3_4:4382738-4382757 | None:intergenic | 60.0% |
| GCTAGCGCTTCTGCATGCCG+CGG | - | chr3_4:4382522-4382541 | Msa0486370:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 4380180 | 4383080 | 4380180 | ID=Msa0486370;Name=Msa0486370 |
| chr3_4 | mRNA | 4380180 | 4383080 | 4380180 | ID=Msa0486370-mRNA-1;Parent=Msa0486370;Name=Msa0486370-mRNA-1;_AED=0.27;_eAED=0.31;_QI=0|0.5|0.6|1|1|1|5|273|337 |
| chr3_4 | exon | 4380180 | 4381058 | 4380180 | ID=Msa0486370-mRNA-1:exon:1632;Parent=Msa0486370-mRNA-1 |
| chr3_4 | exon | 4381331 | 4381399 | 4381331 | ID=Msa0486370-mRNA-1:exon:1631;Parent=Msa0486370-mRNA-1 |
| chr3_4 | exon | 4381803 | 4381921 | 4381803 | ID=Msa0486370-mRNA-1:exon:1630;Parent=Msa0486370-mRNA-1 |
| chr3_4 | exon | 4382261 | 4382409 | 4382261 | ID=Msa0486370-mRNA-1:exon:1629;Parent=Msa0486370-mRNA-1 |
| chr3_4 | exon | 4383010 | 4383080 | 4383010 | ID=Msa0486370-mRNA-1:exon:1628;Parent=Msa0486370-mRNA-1 |
| chr3_4 | CDS | 4383010 | 4383080 | 4383010 | ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1 |
| chr3_4 | CDS | 4382261 | 4382409 | 4382261 | ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1 |
| chr3_4 | CDS | 4381803 | 4381921 | 4381803 | ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1 |
| chr3_4 | CDS | 4381331 | 4381399 | 4381331 | ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1 |
| chr3_4 | CDS | 4380453 | 4381058 | 4380453 | ID=Msa0486370-mRNA-1:cds;Parent=Msa0486370-mRNA-1 |
| chr3_4 | three_prime_UTR | 4380180 | 4380452 | 4380180 | ID=Msa0486370-mRNA-1:three_prime_utr;Parent=Msa0486370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
