Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457320 | XP_013460262.1 | 71.392 | 395 | 62 | 6 | 14 | 396 | 1 | 356 | 0.0 | 528 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457320 | sp|P93755|C3H30_ARATH | 40.154 | 259 | 120 | 6 | 21 | 271 | 260 | 491 | 1.07e-49 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457320 | A0A072UYW3 | 71.392 | 395 | 62 | 6 | 14 | 396 | 1 | 356 | 0.0 | 528 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0457320 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0365310 | Msa0457320 | 0.897047 | 2.052917e-76 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457320 | MtrunA17_Chr3g0105121 | 71.392 | 395 | 62 | 6 | 14 | 396 | 1 | 356 | 0.0 | 528 |
| Msa0457320 | MtrunA17_Chr1g0187591 | 45.960 | 396 | 131 | 9 | 7 | 363 | 187 | 538 | 7.88e-88 | 279 |
| Msa0457320 | MtrunA17_Chr3g0105151 | 60.811 | 222 | 66 | 2 | 203 | 403 | 1 | 222 | 3.58e-78 | 241 |
| Msa0457320 | MtrunA17_Chr3g0105131 | 44.444 | 378 | 141 | 10 | 21 | 380 | 179 | 505 | 3.60e-72 | 234 |
| Msa0457320 | MtrunA17_Chr5g0430211 | 38.384 | 396 | 175 | 14 | 21 | 363 | 229 | 608 | 3.59e-61 | 209 |
| Msa0457320 | MtrunA17_Chr3g0105101 | 49.787 | 235 | 89 | 6 | 52 | 286 | 196 | 401 | 2.52e-58 | 195 |
| Msa0457320 | MtrunA17_Chr5g0437251 | 34.568 | 405 | 181 | 13 | 21 | 365 | 216 | 596 | 4.39e-51 | 182 |
| Msa0457320 | MtrunA17_Chr7g0257831 | 37.226 | 274 | 125 | 7 | 21 | 271 | 263 | 512 | 4.14e-49 | 177 |
| Msa0457320 | MtrunA17_Chr3g0105141 | 65.546 | 119 | 37 | 2 | 21 | 136 | 35 | 152 | 1.30e-48 | 162 |
| Msa0457320 | MtrunA17_Chr3g0113651 | 36.585 | 328 | 113 | 15 | 21 | 329 | 162 | 413 | 8.53e-46 | 165 |
| Msa0457320 | MtrunA17_Chr3g0088521 | 36.232 | 276 | 133 | 7 | 21 | 275 | 263 | 516 | 2.99e-45 | 166 |
| Msa0457320 | MtrunA17_Chr3g0092221 | 46.000 | 150 | 66 | 4 | 21 | 156 | 157 | 305 | 3.35e-39 | 144 |
| Msa0457320 | MtrunA17_Chr8g0389561 | 51.587 | 126 | 58 | 2 | 20 | 143 | 79 | 203 | 9.84e-39 | 143 |
| Msa0457320 | MtrunA17_Chr3g0135351 | 53.846 | 117 | 52 | 1 | 21 | 135 | 52 | 168 | 9.93e-39 | 140 |
| Msa0457320 | MtrunA17_Chr3g0092171 | 48.718 | 156 | 64 | 5 | 21 | 164 | 274 | 425 | 4.71e-38 | 143 |
| Msa0457320 | MtrunA17_Chr1g0171151 | 34.799 | 273 | 132 | 10 | 21 | 275 | 243 | 487 | 2.14e-37 | 143 |
| Msa0457320 | MtrunA17_Chr6g0487481 | 54.286 | 105 | 45 | 2 | 21 | 123 | 102 | 205 | 3.59e-34 | 130 |
| Msa0457320 | MtrunA17_Chr2g0324781 | 51.351 | 111 | 51 | 2 | 23 | 131 | 78 | 187 | 1.46e-31 | 124 |
| Msa0457320 | MtrunA17_Chr4g0040391 | 48.571 | 105 | 51 | 2 | 21 | 123 | 59 | 162 | 6.02e-29 | 115 |
| Msa0457320 | MtrunA17_Chr3g0105111 | 55.405 | 74 | 26 | 3 | 335 | 403 | 5 | 76 | 2.39e-12 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457320 | AT2G41900.1 | 40.154 | 259 | 120 | 6 | 21 | 271 | 260 | 491 | 1.09e-50 | 181 |
| Msa0457320 | AT2G40140.2 | 40.214 | 281 | 118 | 10 | 21 | 294 | 213 | 450 | 2.41e-50 | 179 |
| Msa0457320 | AT2G40140.1 | 40.214 | 281 | 118 | 10 | 21 | 294 | 213 | 450 | 2.41e-50 | 179 |
| Msa0457320 | AT5G58620.1 | 35.230 | 369 | 172 | 15 | 21 | 363 | 208 | 535 | 1.40e-49 | 177 |
| Msa0457320 | AT5G12850.1 | 39.850 | 266 | 130 | 9 | 21 | 275 | 256 | 502 | 5.57e-47 | 171 |
| Msa0457320 | AT3G55980.1 | 40.000 | 280 | 114 | 14 | 21 | 294 | 210 | 441 | 5.22e-45 | 164 |
| Msa0457320 | AT3G55980.2 | 40.000 | 280 | 114 | 14 | 21 | 294 | 277 | 508 | 9.47e-45 | 164 |
| Msa0457320 | AT2G25900.2 | 48.819 | 127 | 62 | 2 | 21 | 145 | 89 | 214 | 9.38e-37 | 136 |
| Msa0457320 | AT2G25900.1 | 48.819 | 127 | 62 | 2 | 21 | 145 | 89 | 214 | 9.38e-37 | 136 |
| Msa0457320 | AT4G29190.1 | 43.919 | 148 | 80 | 2 | 21 | 166 | 78 | 224 | 1.15e-35 | 134 |
| Msa0457320 | AT1G03790.1 | 46.099 | 141 | 68 | 2 | 21 | 159 | 81 | 215 | 1.34e-34 | 132 |
| Msa0457320 | AT5G44260.1 | 53.271 | 107 | 48 | 1 | 21 | 125 | 59 | 165 | 2.11e-34 | 131 |
| Msa0457320 | AT2G19810.1 | 51.402 | 107 | 49 | 2 | 21 | 125 | 77 | 182 | 5.43e-33 | 127 |
| Msa0457320 | AT5G07500.1 | 51.429 | 105 | 48 | 2 | 21 | 123 | 51 | 154 | 1.53e-31 | 120 |
Find 101 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTAACCTTGAAGGCTATTT+TGG | 0.072421 | 3_3:+52019341 | Msa0457320:CDS |
| AGAACAACGCTTTGCAATAA+TGG | 0.289322 | 3_3:+52018846 | Msa0457320:CDS |
| CAGAAACAAGATTGCCTTAA+GGG | 0.313508 | 3_3:+52018558 | Msa0457320:intron |
| TGGTTAGATCACAACAGTTC+AGG | 0.360050 | 3_3:+52019456 | Msa0457320:CDS |
| CTACTTGACCCTTCTATCAT+TGG | 0.369851 | 3_3:-52019299 | None:intergenic |
| ATGCCGAATCCAATGATAGA+AGG | 0.372921 | 3_3:+52019290 | Msa0457320:CDS |
| GAAGGGTCAAGTAGGCTTGC+TGG | 0.383335 | 3_3:+52019308 | Msa0457320:CDS |
| AATATAGATCATGCAGTAAA+GGG | 0.387652 | 3_3:+52018766 | Msa0457320:CDS |
| TGATCTAACCACATTAGAAT+TGG | 0.391379 | 3_3:-52019444 | None:intergenic |
| GACCCTTCTATCATTGGATT+CGG | 0.397498 | 3_3:-52019293 | None:intergenic |
| TGCTGCTCTCGATAAAGTTC+TGG | 0.399385 | 3_3:-52019526 | None:intergenic |
| CCGTGATAGAAAATTAGAAT+TGG | 0.404340 | 3_3:+52019625 | Msa0457320:CDS |
| TTTCAAAACCTGCTCCCTTA+AGG | 0.407360 | 3_3:-52018572 | None:intergenic |
| AAATAGCCTTCAAGGTTAGT+AGG | 0.408517 | 3_3:-52019338 | None:intergenic |
| AAATGTCCCTTTGCTCATCA+TGG | 0.414986 | 3_3:+52018675 | Msa0457320:CDS |
| GCACATGGTGTTCTTGAGTC+CGG | 0.419484 | 3_3:+52018804 | Msa0457320:CDS |
| ATTGCGGTTATGTTCATGAT+TGG | 0.421921 | 3_3:+52018649 | Msa0457320:CDS |
| ATGACCCAAAATAGCCTTCA+AGG | 0.426670 | 3_3:-52019346 | None:intergenic |
| GGCCACATGGTTCTTTCTGC+AGG | 0.427795 | 3_3:-52019146 | None:intergenic |
| CAACTTCAACATTACAATGT+TGG | 0.436387 | 3_3:-52019755 | None:intergenic |
| AATTATATTGCTTCGGATCA+CGG | 0.437370 | 3_3:-52018713 | None:intergenic |
| GAGCCTTCAACTGCCTTCTC+CGG | 0.438785 | 3_3:+52019593 | Msa0457320:CDS |
| TACATCAAATGTTGATGATC+AGG | 0.442359 | 3_3:+52019679 | Msa0457320:CDS |
| TGCTAGAGATAATACTCATC+TGG | 0.443782 | 3_3:+52019241 | Msa0457320:CDS |
| TTTCTGAAATTCATTACAAT+GGG | 0.449878 | 3_3:-52018745 | None:intergenic |
| TCTATCACGGGAGCGCCAAC+CGG | 0.454780 | 3_3:-52019612 | None:intergenic |
| CATCTGTAATTATATTGCTT+CGG | 0.456547 | 3_3:-52018720 | None:intergenic |
| TTGCTCGGCATCTGAGGTGT+AGG | 0.459489 | 3_3:-52019107 | None:intergenic |
| TTGCTCGGCATCTGAGGTGT+AGG | 0.459489 | 3_3:-52019197 | None:intergenic |
| CGTGATAGAAAATTAGAATT+GGG | 0.460547 | 3_3:+52019626 | Msa0457320:CDS |
| AACTGGTAGTAGCATTCAAC+GGG | 0.460601 | 3_3:-52018923 | None:intergenic |
| AGATTCTACCTCAGTTGCAT+TGG | 0.462466 | 3_3:+52019571 | Msa0457320:CDS |
| GCAGAAACAAGATTGCCTTA+AGG | 0.462483 | 3_3:+52018557 | Msa0457320:intron |
| ATGTGAAGGCAAAGCAGAAC+TGG | 0.464662 | 3_3:-52018940 | None:intergenic |
| CAAGATTGCCTTAAGGGAGC+AGG | 0.465339 | 3_3:+52018564 | Msa0457320:CDS |
| CTTCAACTGCCTTCTCCGGT+TGG | 0.466199 | 3_3:+52019597 | Msa0457320:CDS |
| AATGCAACTGAGGTAGAATC+TGG | 0.470321 | 3_3:-52019569 | None:intergenic |
| CAACCGGAGAAGGCAGTTGA+AGG | 0.471582 | 3_3:-52019596 | None:intergenic |
| ACAATCTCTGACAGCAATGC+AGG | 0.473053 | 3_3:+52019373 | Msa0457320:CDS |
| AAATATAGATCATGCAGTAA+AGG | 0.479750 | 3_3:+52018765 | Msa0457320:CDS |
| CAAGATATGATGCCCTTTCG+AGG | 0.483484 | 3_3:+52019498 | Msa0457320:CDS |
| GGCCACATGGTTCTTCCTGC+AGG | 0.483695 | 3_3:-52019056 | None:intergenic |
| ATTTCTGAAATTCATTACAA+TGG | 0.490595 | 3_3:-52018746 | None:intergenic |
| GGTTAGATCACAACAGTTCA+GGG | 0.493239 | 3_3:+52019457 | Msa0457320:CDS |
| ACGGGAGCGCCAACCGGAGA+AGG | 0.494199 | 3_3:-52019606 | None:intergenic |
| GTCCAAGGCGGCATCGATGA+AGG | 0.500707 | 3_3:-52019014 | None:intergenic |
| AATCTGTTGCTCGGCATCTG+AGG | 0.505565 | 3_3:-52019203 | None:intergenic |
| AATGTCCCTTTGCTCATCAT+GGG | 0.509346 | 3_3:+52018676 | Msa0457320:CDS |
| TGAGGTAGAATCTGGAAGCT+TGG | 0.511466 | 3_3:-52019561 | None:intergenic |
| TGCCTTCATCGATGCCGCCT+TGG | 0.512659 | 3_3:+52019012 | Msa0457320:CDS |
| AATCTGTTGCTCGGCATCTG+AGG | 0.528491 | 3_3:-52019113 | None:intergenic |
| CACATGGTGTTCTTGAGTCC+GGG | 0.529152 | 3_3:+52018805 | Msa0457320:CDS |
| GTGAATCCTACTAACCTTGA+AGG | 0.531036 | 3_3:+52019332 | Msa0457320:CDS |
| GATGGATTATTAAGATATGA+AGG | 0.531625 | 3_3:+52019701 | Msa0457320:CDS |
| AAGGATATATCTGAAGTTGT+TGG | 0.532786 | 3_3:-52019412 | None:intergenic |
| CTTTCCCCATGATGAGCAAA+GGG | 0.533381 | 3_3:-52018681 | None:intergenic |
| TATGATATCAATCTGTTGCT+CGG | 0.538210 | 3_3:-52019122 | None:intergenic |
| ATTATTAAGATATGAAGGTA+TGG | 0.540701 | 3_3:+52019706 | Msa0457320:CDS |
| AGTTCTGGCTCTGCCTCGAA+AGG | 0.544056 | 3_3:-52019511 | None:intergenic |
| TAACCACATTAGAATTGGTA+AGG | 0.551193 | 3_3:-52019439 | None:intergenic |
| TGCTCGGCATCTGAGGTGTA+GGG | 0.552789 | 3_3:-52019106 | None:intergenic |
| TGCTCGGCATCTGAGGTGTA+GGG | 0.552789 | 3_3:-52019196 | None:intergenic |
| CTTCTTTGCTCACAATCATG+AGG | 0.556333 | 3_3:+52018893 | Msa0457320:CDS |
| TATGGTTAATGAACTTGTGA+AGG | 0.556348 | 3_3:+52019724 | Msa0457320:CDS |
| ATCGATGAAGGCAATGTGAA+AGG | 0.560883 | 3_3:-52019002 | None:intergenic |
| GCAGTATTCAATCTGTTGCT+CGG | 0.567984 | 3_3:-52019212 | None:intergenic |
| TCACCTTACCAATTCTAATG+TGG | 0.568314 | 3_3:+52019436 | Msa0457320:CDS |
| CACTAGCAACACTTCAACAA+TGG | 0.568642 | 3_3:+52019652 | Msa0457320:CDS |
| TTAGAATTGGTAAGGTGAGA+AGG | 0.571244 | 3_3:-52019431 | None:intergenic |
| GGATACATTGCAGAAGCACT+TGG | 0.571506 | 3_3:-52018981 | None:intergenic |
| GATATTGCAGACGGTGTCCA+AGG | 0.573927 | 3_3:-52019029 | None:intergenic |
| GCTTTCCCCATGATGAGCAA+AGG | 0.578685 | 3_3:-52018682 | None:intergenic |
| CAATGATAGAAGGGTCAAGT+AGG | 0.578738 | 3_3:+52019300 | Msa0457320:CDS |
| TGCCGAATCCAATGATAGAA+GGG | 0.587494 | 3_3:+52019291 | Msa0457320:CDS |
| GTACTAATCTGAGTCGGAGT+CGG | 0.588992 | 3_3:-52019167 | None:intergenic |
| GTTCTGGCTCTGCCTCGAAA+GGG | 0.592388 | 3_3:-52019510 | None:intergenic |
| CTGAGTCGGAGTCGGCCACA+TGG | 0.594746 | 3_3:-52019069 | None:intergenic |
| GAACTGGTAGTAGCATTCAA+CGG | 0.595753 | 3_3:-52018924 | None:intergenic |
| CAATCTCTGACAGCAATGCA+GGG | 0.596145 | 3_3:+52019374 | Msa0457320:CDS |
| GTACGATTCTGAGTCGGAGT+CGG | 0.598804 | 3_3:-52019077 | None:intergenic |
| TCAAATGTTGATGATCAGGA+TGG | 0.604566 | 3_3:+52019683 | Msa0457320:CDS |
| CTGAGTCGGAGTCGGCCACA+TGG | 0.607724 | 3_3:-52019159 | None:intergenic |
| TCTGCAATATCATATCCTGC+AGG | 0.614316 | 3_3:+52019041 | Msa0457320:CDS |
| ACTGTAGTACTAATCTGAGT+CGG | 0.618849 | 3_3:-52019173 | None:intergenic |
| ACATTCAAAGTGCGGCATTG+CGG | 0.631811 | 3_3:+52018633 | Msa0457320:CDS |
| TGATGTATACATTCAAAGTG+CGG | 0.634386 | 3_3:+52018625 | Msa0457320:CDS |
| CTTTATCGAGAGCAGCAGCA+TGG | 0.636540 | 3_3:+52019532 | Msa0457320:CDS |
| TTTGAATATAATGTATGTGA+AGG | 0.637611 | 3_3:-52018954 | None:intergenic |
| GCAGGATATGATATTGCAGA+CGG | 0.643899 | 3_3:-52019038 | None:intergenic |
| ATATAGATCATGCAGTAAAG+GGG | 0.646866 | 3_3:+52018767 | Msa0457320:CDS |
| TGAAGGCTCCAATGCAACTG+AGG | 0.649434 | 3_3:-52019579 | None:intergenic |
| ATGTCCCTTTGCTCATCATG+GGG | 0.650802 | 3_3:+52018677 | Msa0457320:CDS |
| ACTGTAGTACGATTCTGAGT+CGG | 0.653294 | 3_3:-52019083 | None:intergenic |
| GTATCGACTAGGATGCAGCC+CGG | 0.668994 | 3_3:-52018823 | None:intergenic |
| AGCGTTGTTCTGTATCGACT+AGG | 0.678911 | 3_3:-52018834 | None:intergenic |
| AATCTCTGACAGCAATGCAG+GGG | 0.689149 | 3_3:+52019375 | Msa0457320:CDS |
| GTTAGATCACAACAGTTCAG+GGG | 0.713618 | 3_3:+52019458 | Msa0457320:CDS |
| ATTGCAGACGGTGTCCAAGG+CGG | 0.715505 | 3_3:-52019026 | None:intergenic |
| GATGAATGTCAATATGCACA+TGG | 0.762142 | 3_3:+52018789 | Msa0457320:CDS |
| ATCCTGCAGGAAGAACCATG+TGG | 0.814597 | 3_3:+52019054 | Msa0457320:CDS |
| ATCCTGCAGAAAGAACCATG+TGG | 0.834161 | 3_3:+52019144 | Msa0457320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAATAAGTAAAAAAAC+TGG | - | chr3_3:52017227-52017246 | None:intergenic | 10.0% |
| !! | AAAAATACTATATATATACA+AGG | + | chr3_3:52017278-52017297 | Msa0457320:intron | 10.0% |
| !! | AAAATACTATATATATACAA+GGG | + | chr3_3:52017279-52017298 | Msa0457320:intron | 10.0% |
| !! | TGAAATATGAAAAATGAAAT+TGG | - | chr3_3:52016728-52016747 | None:intergenic | 15.0% |
| !!! | TTATGAATGGATTTTTTTTT+TGG | - | chr3_3:52017173-52017192 | None:intergenic | 15.0% |
| !! | ATAAGAAAAATACATAAAGA+GGG | - | chr3_3:52018056-52018075 | None:intergenic | 15.0% |
| !! | AATAAGAAAAATACATAAAG+AGG | - | chr3_3:52018057-52018076 | None:intergenic | 15.0% |
| !!! | ATTTGGTTATTTTGTTAATA+AGG | + | chr3_3:52018399-52018418 | Msa0457320:intron | 15.0% |
| !! | TCATATCTTGAATTAAAAAA+TGG | - | chr3_3:52019488-52019507 | None:intergenic | 15.0% |
| !!! | TATAGATACTGATTATTTGT+AGG | + | chr3_3:52016497-52016516 | Msa0457320:intron | 20.0% |
| !!! | TCTAAGAAGTTTTTATTCAT+TGG | + | chr3_3:52016997-52017016 | Msa0457320:intron | 20.0% |
| !! | TTATAGAAAGCTTAACATAT+TGG | + | chr3_3:52017069-52017088 | Msa0457320:intron | 20.0% |
| !!! | ACTCAATATTGATATTTTCA+GGG | - | chr3_3:52017118-52017137 | None:intergenic | 20.0% |
| !!! | AACTCAATATTGATATTTTC+AGG | - | chr3_3:52017119-52017138 | None:intergenic | 20.0% |
| !!! | CCAATACTTTTTTTTATGAA+TGG | - | chr3_3:52017186-52017205 | None:intergenic | 20.0% |
| !!! | CCATTCATAAAAAAAAGTAT+TGG | + | chr3_3:52017183-52017202 | Msa0457320:intron | 20.0% |
| !!! | TTTGTTGTTTTATGATTTTG+AGG | - | chr3_3:52017698-52017717 | None:intergenic | 20.0% |
| !! | TAAAAGAACTTACATGAATA+AGG | - | chr3_3:52017801-52017820 | None:intergenic | 20.0% |
| !!! | ATTTTTCTTATTCTTCTTGA+TGG | + | chr3_3:52018065-52018084 | Msa0457320:intron | 20.0% |
| !!! | TTTTTCTTATTCTTCTTGAT+GGG | + | chr3_3:52018066-52018085 | Msa0457320:intron | 20.0% |
| !! | AAAACAATACAAAGAATTCT+GGG | - | chr3_3:52018376-52018395 | None:intergenic | 20.0% |
| !! | CAAAAAATAAGAACAAACAA+TGG | - | chr3_3:52018440-52018459 | None:intergenic | 20.0% |
| !!! | TTTCTGAAATTCATTACAAT+GGG | - | chr3_3:52018748-52018767 | None:intergenic | 20.0% |
| !!! | ATTTCTGAAATTCATTACAA+TGG | - | chr3_3:52018749-52018768 | None:intergenic | 20.0% |
| !! | TTTGAATATAATGTATGTGA+AGG | - | chr3_3:52018957-52018976 | None:intergenic | 20.0% |
| !! | ATTATTAAGATATGAAGGTA+TGG | + | chr3_3:52019706-52019725 | Msa0457320:CDS | 20.0% |
| ! | TGTGCATATAATGTTTAAGA+TGG | + | chr3_3:52016771-52016790 | Msa0457320:intron | 25.0% |
| !!! | ATGTTTTAGCATAATCTGAT+AGG | + | chr3_3:52016908-52016927 | Msa0457320:intron | 25.0% |
| ! | ATTTGGACAACTTTCAATTA+AGG | + | chr3_3:52017336-52017355 | Msa0457320:intron | 25.0% |
| !!! | TTTCTAAAACCTTCAAGTTT+TGG | + | chr3_3:52017991-52018010 | Msa0457320:intron | 25.0% |
| !!! | GAGATTACAATGTGTTTTTT+TGG | + | chr3_3:52018133-52018152 | Msa0457320:intron | 25.0% |
| !! | CTAAGAAAGTTTCTGAAAAA+TGG | + | chr3_3:52018159-52018178 | Msa0457320:intron | 25.0% |
| ! | TTAGATTAAGAACACAACAA+TGG | - | chr3_3:52018287-52018306 | None:intergenic | 25.0% |
| ! | CTAACAATATTAAATGCAGT+TGG | + | chr3_3:52018303-52018322 | Msa0457320:intron | 25.0% |
| ! | CAAAACAATACAAAGAATTC+TGG | - | chr3_3:52018377-52018396 | None:intergenic | 25.0% |
| !!! | CTTTGTATTGTTTTGCTATT+TGG | + | chr3_3:52018382-52018401 | Msa0457320:intron | 25.0% |
| ! | CTACAAAATCATCAATTACT+AGG | - | chr3_3:52018529-52018548 | None:intergenic | 25.0% |
| ! | CATCTGTAATTATATTGCTT+CGG | - | chr3_3:52018723-52018742 | None:intergenic | 25.0% |
| ! | AAATATAGATCATGCAGTAA+AGG | + | chr3_3:52018765-52018784 | Msa0457320:CDS | 25.0% |
| ! | AATATAGATCATGCAGTAAA+GGG | + | chr3_3:52018766-52018785 | Msa0457320:CDS | 25.0% |
| !! | CAATTCTAATTTTCTATCAC+GGG | - | chr3_3:52019627-52019646 | None:intergenic | 25.0% |
| !! | CCAATTCTAATTTTCTATCA+CGG | - | chr3_3:52019628-52019647 | None:intergenic | 25.0% |
| ! | CGTGATAGAAAATTAGAATT+GGG | + | chr3_3:52019626-52019645 | Msa0457320:CDS | 25.0% |
| !!! | GATGGATTATTAAGATATGA+AGG | + | chr3_3:52019701-52019720 | Msa0457320:CDS | 25.0% |
| TACTACTAGGGTATAGTATA+TGG | + | chr3_3:52016592-52016611 | Msa0457320:intron | 30.0% | |
| TGAACAACAAAGCAAGAAAA+TGG | - | chr3_3:52016620-52016639 | None:intergenic | 30.0% | |
| TACATATGTTTGCAAGTGTT+AGG | + | chr3_3:52016813-52016832 | Msa0457320:intron | 30.0% | |
| GGCATCAAACTATAATATGA+AGG | - | chr3_3:52016861-52016880 | None:intergenic | 30.0% | |
| AGACAATGCAAGAATCTAAA+AGG | - | chr3_3:52016882-52016901 | None:intergenic | 30.0% | |
| AGAATCATCAATGGTACATA+TGG | - | chr3_3:52016962-52016981 | None:intergenic | 30.0% | |
| GGTCTTAGATTGTGTATATT+TGG | + | chr3_3:52017319-52017338 | Msa0457320:intron | 30.0% | |
| CTCTTGTTCAAAAAGACATT+TGG | + | chr3_3:52017399-52017418 | Msa0457320:intron | 30.0% | |
| TCATATTTCAGAGTTACTTG+AGG | - | chr3_3:52017539-52017558 | None:intergenic | 30.0% | |
| AATATCAGCTCAAAACAGTT+AGG | - | chr3_3:52017590-52017609 | None:intergenic | 30.0% | |
| !! | AACTGTTTTGAGCTGATATT+TGG | + | chr3_3:52017590-52017609 | Msa0457320:intron | 30.0% |
| GTTTAGAAACTTGAGAAACA+AGG | - | chr3_3:52017754-52017773 | None:intergenic | 30.0% | |
| TTTGAAAAGATCGCATCTTT+AGG | - | chr3_3:52017878-52017897 | None:intergenic | 30.0% | |
| ! | AAGATTGCAATGTGTTTTCT+TGG | + | chr3_3:52017906-52017925 | Msa0457320:intron | 30.0% |
| ! | AATTCAGAACACAGTTTTTC+AGG | - | chr3_3:52017946-52017965 | None:intergenic | 30.0% |
| !! | GTGTTTTGAATTGTTTGTTC+TGG | + | chr3_3:52018183-52018202 | Msa0457320:intron | 30.0% |
| TGGTCGATAAAATTAACAAG+CGG | + | chr3_3:52018323-52018342 | Msa0457320:intron | 30.0% | |
| AGGAAATTAGCAACATGTAT+TGG | - | chr3_3:52018509-52018528 | None:intergenic | 30.0% | |
| TGATGTATACATTCAAAGTG+CGG | + | chr3_3:52018625-52018644 | Msa0457320:CDS | 30.0% | |
| AATTATATTGCTTCGGATCA+CGG | - | chr3_3:52018716-52018735 | None:intergenic | 30.0% | |
| ATATAGATCATGCAGTAAAG+GGG | + | chr3_3:52018767-52018786 | Msa0457320:CDS | 30.0% | |
| TATGATATCAATCTGTTGCT+CGG | - | chr3_3:52019125-52019144 | None:intergenic | 30.0% | |
| ! | AAGGATATATCTGAAGTTGT+TGG | - | chr3_3:52019415-52019434 | None:intergenic | 30.0% |
| TAACCACATTAGAATTGGTA+AGG | - | chr3_3:52019442-52019461 | None:intergenic | 30.0% | |
| TGATCTAACCACATTAGAAT+TGG | - | chr3_3:52019447-52019466 | None:intergenic | 30.0% | |
| CCGTGATAGAAAATTAGAAT+TGG | + | chr3_3:52019625-52019644 | Msa0457320:CDS | 30.0% | |
| !! | TACATCAAATGTTGATGATC+AGG | + | chr3_3:52019679-52019698 | Msa0457320:CDS | 30.0% |
| TATGGTTAATGAACTTGTGA+AGG | + | chr3_3:52019724-52019743 | Msa0457320:CDS | 30.0% | |
| !! | AACAGCTTGTTACTACTACT+AGG | + | chr3_3:52016579-52016598 | Msa0457320:intron | 35.0% |
| !! | ACAGCTTGTTACTACTACTA+GGG | + | chr3_3:52016580-52016599 | Msa0457320:intron | 35.0% |
| TACATAAATCACGGTTCTCT+TGG | - | chr3_3:52016666-52016685 | None:intergenic | 35.0% | |
| CAGTCTCACTACATAAATCA+CGG | - | chr3_3:52016675-52016694 | None:intergenic | 35.0% | |
| ! | TGTACCATTGATGATTCTTC+AGG | + | chr3_3:52016964-52016983 | Msa0457320:intron | 35.0% |
| ! | ATGATTCTTCAGGCTACTTT+CGG | + | chr3_3:52016974-52016993 | Msa0457320:intron | 35.0% |
| ! | TACAAGGGAAAATTTTGCCT+AGG | + | chr3_3:52017294-52017313 | Msa0457320:intron | 35.0% |
| ! | ACAAGGGAAAATTTTGCCTA+GGG | + | chr3_3:52017295-52017314 | Msa0457320:intron | 35.0% |
| AACAAGAGATATGTCGTATC+AGG | - | chr3_3:52017387-52017406 | None:intergenic | 35.0% | |
| GTGACATAACTGCACAATAT+TGG | + | chr3_3:52017427-52017446 | Msa0457320:intron | 35.0% | |
| AATCTTGAGCTCCTATCATA+AGG | + | chr3_3:52017465-52017484 | Msa0457320:intron | 35.0% | |
| AAGCAAAGTTACTCTACATG+TGG | - | chr3_3:52017500-52017519 | None:intergenic | 35.0% | |
| ! | TTTTGAGCTGATATTTGGCT+TGG | + | chr3_3:52017595-52017614 | Msa0457320:intron | 35.0% |
| TTAGAAGAAGAGCTGGTAAT+AGG | + | chr3_3:52017635-52017654 | Msa0457320:intron | 35.0% | |
| AAACTTGAGAAACAAGGCAA+AGG | - | chr3_3:52017748-52017767 | None:intergenic | 35.0% | |
| TCTAAACCTTCACCAGATTT+CGG | + | chr3_3:52017767-52017786 | Msa0457320:intron | 35.0% | |
| AAGAAGAACTTACATGAGCA+AGG | - | chr3_3:52018025-52018044 | None:intergenic | 35.0% | |
| !! | CTTGATGGGTCATTAAGTTT+TGG | + | chr3_3:52018080-52018099 | Msa0457320:intron | 35.0% |
| CAGAAACAAGATTGCCTTAA+GGG | + | chr3_3:52018558-52018577 | Msa0457320:intron | 35.0% | |
| ATTGCGGTTATGTTCATGAT+TGG | + | chr3_3:52018649-52018668 | Msa0457320:CDS | 35.0% | |
| GATGAATGTCAATATGCACA+TGG | + | chr3_3:52018789-52018808 | Msa0457320:CDS | 35.0% | |
| AGAACAACGCTTTGCAATAA+TGG | + | chr3_3:52018846-52018865 | Msa0457320:CDS | 35.0% | |
| ACTGTAGTACTAATCTGAGT+CGG | - | chr3_3:52019176-52019195 | None:intergenic | 35.0% | |
| TGCTAGAGATAATACTCATC+TGG | + | chr3_3:52019241-52019260 | Msa0457320:CDS | 35.0% | |
| AAATAGCCTTCAAGGTTAGT+AGG | - | chr3_3:52019341-52019360 | None:intergenic | 35.0% | |
| ! | ACTAACCTTGAAGGCTATTT+TGG | + | chr3_3:52019341-52019360 | Msa0457320:CDS | 35.0% |
| !! | CTAACCTTGAAGGCTATTTT+GGG | + | chr3_3:52019342-52019361 | Msa0457320:CDS | 35.0% |
| TTAGAATTGGTAAGGTGAGA+AGG | - | chr3_3:52019434-52019453 | None:intergenic | 35.0% | |
| TCACCTTACCAATTCTAATG+TGG | + | chr3_3:52019436-52019455 | Msa0457320:CDS | 35.0% | |
| !! | TCAAATGTTGATGATCAGGA+TGG | + | chr3_3:52019683-52019702 | Msa0457320:CDS | 35.0% |
| TAAATAAAGACGCTAGAGCG+CGG | - | chr3_3:52016456-52016475 | None:intergenic | 40.0% | |
| TAGCATAATCTGATAGGTGC+TGG | + | chr3_3:52016914-52016933 | Msa0457320:intron | 40.0% | |
| GTAGCCTGAAGAATCATCAA+TGG | - | chr3_3:52016971-52016990 | None:intergenic | 40.0% | |
| AGTTGAGTTTATCGAGCACA+AGG | + | chr3_3:52017038-52017057 | Msa0457320:intron | 40.0% | |
| ATCTGACTTAGAAGAAGAGC+TGG | + | chr3_3:52017628-52017647 | Msa0457320:intron | 40.0% | |
| AAACAAGGCAAAGGAAGAAG+TGG | - | chr3_3:52017739-52017758 | None:intergenic | 40.0% | |
| GAAACAGCACCAAAACTTGA+AGG | - | chr3_3:52018003-52018022 | None:intergenic | 40.0% | |
| ATGCTTTCTCTTTCACTCTC+TGG | + | chr3_3:52018242-52018261 | Msa0457320:intron | 40.0% | |
| GCAGAAACAAGATTGCCTTA+AGG | + | chr3_3:52018557-52018576 | Msa0457320:intron | 40.0% | |
| TTTCAAAACCTGCTCCCTTA+AGG | - | chr3_3:52018575-52018594 | None:intergenic | 40.0% | |
| !!! | TAAGGGAGCAGGTTTTGAAA+TGG | + | chr3_3:52018575-52018594 | Msa0457320:CDS | 40.0% |
| AAATGTCCCTTTGCTCATCA+TGG | + | chr3_3:52018675-52018694 | Msa0457320:CDS | 40.0% | |
| AATGTCCCTTTGCTCATCAT+GGG | + | chr3_3:52018676-52018695 | Msa0457320:CDS | 40.0% | |
| CTTCTTTGCTCACAATCATG+AGG | + | chr3_3:52018893-52018912 | Msa0457320:CDS | 40.0% | |
| AACTGGTAGTAGCATTCAAC+GGG | - | chr3_3:52018926-52018945 | None:intergenic | 40.0% | |
| GAACTGGTAGTAGCATTCAA+CGG | - | chr3_3:52018927-52018946 | None:intergenic | 40.0% | |
| ATCGATGAAGGCAATGTGAA+AGG | - | chr3_3:52019005-52019024 | None:intergenic | 40.0% | |
| GCAGGATATGATATTGCAGA+CGG | - | chr3_3:52019041-52019060 | None:intergenic | 40.0% | |
| TCTGCAATATCATATCCTGC+AGG | + | chr3_3:52019041-52019060 | Msa0457320:CDS | 40.0% | |
| ACTGTAGTACGATTCTGAGT+CGG | - | chr3_3:52019086-52019105 | None:intergenic | 40.0% | |
| GCAGTATTCAATCTGTTGCT+CGG | - | chr3_3:52019215-52019234 | None:intergenic | 40.0% | |
| ATGCCGAATCCAATGATAGA+AGG | + | chr3_3:52019290-52019309 | Msa0457320:CDS | 40.0% | |
| TGCCGAATCCAATGATAGAA+GGG | + | chr3_3:52019291-52019310 | Msa0457320:CDS | 40.0% | |
| GACCCTTCTATCATTGGATT+CGG | - | chr3_3:52019296-52019315 | None:intergenic | 40.0% | |
| CTACTTGACCCTTCTATCAT+TGG | - | chr3_3:52019302-52019321 | None:intergenic | 40.0% | |
| CAATGATAGAAGGGTCAAGT+AGG | + | chr3_3:52019300-52019319 | Msa0457320:CDS | 40.0% | |
| GTGAATCCTACTAACCTTGA+AGG | + | chr3_3:52019332-52019351 | Msa0457320:CDS | 40.0% | |
| ATGACCCAAAATAGCCTTCA+AGG | - | chr3_3:52019349-52019368 | None:intergenic | 40.0% | |
| TGGTTAGATCACAACAGTTC+AGG | + | chr3_3:52019456-52019475 | Msa0457320:CDS | 40.0% | |
| GGTTAGATCACAACAGTTCA+GGG | + | chr3_3:52019457-52019476 | Msa0457320:CDS | 40.0% | |
| GTTAGATCACAACAGTTCAG+GGG | + | chr3_3:52019458-52019477 | Msa0457320:CDS | 40.0% | |
| AATGCAACTGAGGTAGAATC+TGG | - | chr3_3:52019572-52019591 | None:intergenic | 40.0% | |
| AGATTCTACCTCAGTTGCAT+TGG | + | chr3_3:52019571-52019590 | Msa0457320:CDS | 40.0% | |
| CACTAGCAACACTTCAACAA+TGG | + | chr3_3:52019652-52019671 | Msa0457320:CDS | 40.0% | |
| TGTTAGGACATGTGTGACAC+TGG | + | chr3_3:52016829-52016848 | Msa0457320:intron | 45.0% | |
| ! | AGGGAAAATTTTGCCTAGGG+AGG | + | chr3_3:52017298-52017317 | Msa0457320:intron | 45.0% |
| ! | ACACAATCTAAGACCTCCCT+AGG | - | chr3_3:52017314-52017333 | None:intergenic | 45.0% |
| GGTGCAGCTTACCTTATGAT+AGG | - | chr3_3:52017479-52017498 | None:intergenic | 45.0% | |
| ACATTCAAAGTGCGGCATTG+CGG | + | chr3_3:52018633-52018652 | Msa0457320:CDS | 45.0% | |
| ATGTCCCTTTGCTCATCATG+GGG | + | chr3_3:52018677-52018696 | Msa0457320:CDS | 45.0% | |
| CTTTCCCCATGATGAGCAAA+GGG | - | chr3_3:52018684-52018703 | None:intergenic | 45.0% | |
| !! | AGCGTTGTTCTGTATCGACT+AGG | - | chr3_3:52018837-52018856 | None:intergenic | 45.0% |
| ATGTGAAGGCAAAGCAGAAC+TGG | - | chr3_3:52018943-52018962 | None:intergenic | 45.0% | |
| !! | GGATACATTGCAGAAGCACT+TGG | - | chr3_3:52018984-52019003 | None:intergenic | 45.0% |
| ATCCTGCAGAAAGAACCATG+TGG | + | chr3_3:52019144-52019163 | Msa0457320:CDS | 45.0% | |
| GTACTAATCTGAGTCGGAGT+CGG | - | chr3_3:52019170-52019189 | None:intergenic | 45.0% | |
| ACAATCTCTGACAGCAATGC+AGG | + | chr3_3:52019373-52019392 | Msa0457320:CDS | 45.0% | |
| CAATCTCTGACAGCAATGCA+GGG | + | chr3_3:52019374-52019393 | Msa0457320:CDS | 45.0% | |
| AATCTCTGACAGCAATGCAG+GGG | + | chr3_3:52019375-52019394 | Msa0457320:CDS | 45.0% | |
| CAAGATATGATGCCCTTTCG+AGG | + | chr3_3:52019498-52019517 | Msa0457320:CDS | 45.0% | |
| TGCTGCTCTCGATAAAGTTC+TGG | - | chr3_3:52019529-52019548 | None:intergenic | 45.0% | |
| TGAGGTAGAATCTGGAAGCT+TGG | - | chr3_3:52019564-52019583 | None:intergenic | 45.0% | |
| !! | TATAATATTAATTATAACAT+TGG | + | chr3_3:52016425-52016444 | Msa0457320:intron | 5.0% |
| AAGGAACCTGCACCGAAATC+TGG | - | chr3_3:52017782-52017801 | None:intergenic | 50.0% | |
| CAAGATTGCCTTAAGGGAGC+AGG | + | chr3_3:52018564-52018583 | Msa0457320:CDS | 50.0% | |
| GCTTTCCCCATGATGAGCAA+AGG | - | chr3_3:52018685-52018704 | None:intergenic | 50.0% | |
| GCACATGGTGTTCTTGAGTC+CGG | + | chr3_3:52018804-52018823 | Msa0457320:CDS | 50.0% | |
| CACATGGTGTTCTTGAGTCC+GGG | + | chr3_3:52018805-52018824 | Msa0457320:CDS | 50.0% | |
| GATATTGCAGACGGTGTCCA+AGG | - | chr3_3:52019032-52019051 | None:intergenic | 50.0% | |
| ATCCTGCAGGAAGAACCATG+TGG | + | chr3_3:52019054-52019073 | Msa0457320:CDS | 50.0% | |
| GTACGATTCTGAGTCGGAGT+CGG | - | chr3_3:52019080-52019099 | None:intergenic | 50.0% | |
| AATCTGTTGCTCGGCATCTG+AGG | - | chr3_3:52019116-52019135 | None:intergenic | 50.0% | |
| AATCTGTTGCTCGGCATCTG+AGG | - | chr3_3:52019116-52019135 | None:intergenic | 50.0% | |
| CTTTATCGAGAGCAGCAGCA+TGG | + | chr3_3:52019532-52019551 | Msa0457320:CDS | 50.0% | |
| TGAAGGCTCCAATGCAACTG+AGG | - | chr3_3:52019582-52019601 | None:intergenic | 50.0% | |
| ATAAAGACGCTAGAGCGCGG+AGG | - | chr3_3:52016453-52016472 | None:intergenic | 55.0% | |
| AGGTGACTAGTGCAGCAGCT+TGG | + | chr3_3:52017655-52017674 | Msa0457320:intron | 55.0% | |
| TGACTAGTGCAGCAGCTTGG+TGG | + | chr3_3:52017658-52017677 | Msa0457320:intron | 55.0% | |
| GACTAGTGCAGCAGCTTGGT+GGG | + | chr3_3:52017659-52017678 | Msa0457320:intron | 55.0% | |
| CCTGCACCGAAATCTGGTGA+AGG | - | chr3_3:52017776-52017795 | None:intergenic | 55.0% | |
| ! | CCTTCACCAGATTTCGGTGC+AGG | + | chr3_3:52017773-52017792 | Msa0457320:intron | 55.0% |
| !! | GTATCGACTAGGATGCAGCC+CGG | - | chr3_3:52018826-52018845 | None:intergenic | 55.0% |
| ATTGCAGACGGTGTCCAAGG+CGG | - | chr3_3:52019029-52019048 | None:intergenic | 55.0% | |
| ! | TGCTCGGCATCTGAGGTGTA+GGG | - | chr3_3:52019109-52019128 | None:intergenic | 55.0% |
| ! | TTGCTCGGCATCTGAGGTGT+AGG | - | chr3_3:52019110-52019129 | None:intergenic | 55.0% |
| GGCCACATGGTTCTTTCTGC+AGG | - | chr3_3:52019149-52019168 | None:intergenic | 55.0% | |
| ! | TGCTCGGCATCTGAGGTGTA+GGG | - | chr3_3:52019109-52019128 | None:intergenic | 55.0% |
| ! | TTGCTCGGCATCTGAGGTGT+AGG | - | chr3_3:52019110-52019129 | None:intergenic | 55.0% |
| GAAGGGTCAAGTAGGCTTGC+TGG | + | chr3_3:52019308-52019327 | Msa0457320:CDS | 55.0% | |
| !! | GTTCTGGCTCTGCCTCGAAA+GGG | - | chr3_3:52019513-52019532 | None:intergenic | 55.0% |
| !! | AGTTCTGGCTCTGCCTCGAA+AGG | - | chr3_3:52019514-52019533 | None:intergenic | 55.0% |
| GAGCCTTCAACTGCCTTCTC+CGG | + | chr3_3:52019593-52019612 | Msa0457320:CDS | 55.0% | |
| CAACCGGAGAAGGCAGTTGA+AGG | - | chr3_3:52019599-52019618 | None:intergenic | 55.0% | |
| CTTCAACTGCCTTCTCCGGT+TGG | + | chr3_3:52019597-52019616 | Msa0457320:CDS | 55.0% | |
| TGCCTTCATCGATGCCGCCT+TGG | + | chr3_3:52019012-52019031 | Msa0457320:CDS | 60.0% | |
| !! | GTCCAAGGCGGCATCGATGA+AGG | - | chr3_3:52019017-52019036 | None:intergenic | 60.0% |
| GGCCACATGGTTCTTCCTGC+AGG | - | chr3_3:52019059-52019078 | None:intergenic | 60.0% | |
| !! | TCTATCACGGGAGCGCCAAC+CGG | - | chr3_3:52019615-52019634 | None:intergenic | 60.0% |
| CTGAGTCGGAGTCGGCCACA+TGG | - | chr3_3:52019072-52019091 | None:intergenic | 65.0% | |
| CTGAGTCGGAGTCGGCCACA+TGG | - | chr3_3:52019072-52019091 | None:intergenic | 65.0% | |
| !! | ACGGGAGCGCCAACCGGAGA+AGG | - | chr3_3:52019609-52019628 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 52016413 | 52019766 | 52016413 | ID=Msa0457320;Name=Msa0457320 |
| chr3_3 | mRNA | 52016413 | 52019766 | 52016413 | ID=Msa0457320-mRNA-1;Parent=Msa0457320;Name=Msa0457320-mRNA-1;_AED=0.40;_eAED=0.40;_QI=0|0|0|1|0|0.5|2|0|403 |
| chr3_3 | exon | 52016413 | 52016418 | 52016413 | ID=Msa0457320-mRNA-1:exon:9992;Parent=Msa0457320-mRNA-1 |
| chr3_3 | exon | 52018561 | 52019766 | 52018561 | ID=Msa0457320-mRNA-1:exon:9993;Parent=Msa0457320-mRNA-1 |
| chr3_3 | CDS | 52016413 | 52016418 | 52016413 | ID=Msa0457320-mRNA-1:cds;Parent=Msa0457320-mRNA-1 |
| chr3_3 | CDS | 52018561 | 52019766 | 52018561 | ID=Msa0457320-mRNA-1:cds;Parent=Msa0457320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
