Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457440 | XP_013460247.1 | 95.064 | 466 | 7 | 1 | 1 | 450 | 1 | 466 | 0.0 | 917 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457440 | sp|B0X1Q4|RUMI_CULQU | 23.446 | 354 | 239 | 12 | 81 | 415 | 62 | 402 | 4.08e-22 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457440 | A0A072UYU6 | 95.064 | 466 | 7 | 1 | 1 | 450 | 1 | 466 | 0.0 | 917 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0457440 | Msa0546110 | 0.802992 | 4.312075e-49 | -8.615850e-47 |
| Msa0457440 | Msa1430720 | 0.936872 | 8.658860e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457440 | MtrunA17_Chr3g0104841 | 95.064 | 466 | 7 | 1 | 1 | 450 | 1 | 466 | 0.0 | 917 |
| Msa0457440 | MtrunA17_Chr8g0349361 | 45.844 | 397 | 202 | 6 | 65 | 449 | 84 | 479 | 2.37e-128 | 381 |
| Msa0457440 | MtrunA17_Chr6g0471441 | 47.283 | 368 | 185 | 5 | 90 | 449 | 106 | 472 | 7.33e-125 | 372 |
| Msa0457440 | MtrunA17_Chr5g0397701 | 48.501 | 367 | 178 | 7 | 90 | 449 | 107 | 469 | 5.18e-122 | 364 |
| Msa0457440 | MtrunA17_Chr8g0349241 | 43.687 | 396 | 209 | 6 | 65 | 447 | 70 | 464 | 8.60e-122 | 363 |
| Msa0457440 | MtrunA17_Chr8g0349371 | 45.000 | 400 | 203 | 8 | 65 | 449 | 65 | 462 | 2.77e-120 | 360 |
| Msa0457440 | MtrunA17_Chr7g0247261 | 45.082 | 366 | 191 | 5 | 90 | 447 | 76 | 439 | 9.80e-118 | 352 |
| Msa0457440 | MtrunA17_Chr7g0247251 | 43.750 | 368 | 196 | 6 | 89 | 447 | 27 | 392 | 8.75e-115 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0457440 | AT1G07220.1 | 60.738 | 461 | 162 | 2 | 6 | 447 | 12 | 472 | 0.0 | 605 |
| Msa0457440 | AT5G23850.1 | 48.509 | 369 | 181 | 5 | 89 | 449 | 138 | 505 | 4.94e-132 | 392 |
| Msa0457440 | AT3G48980.1 | 47.154 | 369 | 186 | 5 | 89 | 449 | 135 | 502 | 3.83e-127 | 379 |
| Msa0457440 | AT3G48980.2 | 47.154 | 369 | 186 | 5 | 89 | 449 | 141 | 508 | 4.45e-127 | 379 |
| Msa0457440 | AT1G63420.1 | 44.495 | 436 | 215 | 10 | 34 | 449 | 117 | 545 | 1.55e-119 | 361 |
| Msa0457440 | AT2G45830.4 | 43.814 | 388 | 205 | 6 | 68 | 447 | 101 | 483 | 1.99e-119 | 359 |
| Msa0457440 | AT2G45830.1 | 43.814 | 388 | 205 | 6 | 68 | 447 | 101 | 483 | 1.99e-119 | 359 |
| Msa0457440 | AT3G61270.1 | 45.161 | 372 | 196 | 5 | 85 | 449 | 92 | 462 | 4.62e-118 | 355 |
| Msa0457440 | AT2G45840.1 | 43.176 | 403 | 211 | 8 | 60 | 449 | 88 | 485 | 1.25e-111 | 339 |
| Msa0457440 | AT2G45830.3 | 45.029 | 342 | 179 | 5 | 114 | 447 | 2 | 342 | 7.58e-109 | 327 |
| Msa0457440 | AT2G45830.6 | 45.029 | 342 | 179 | 5 | 114 | 447 | 2 | 342 | 7.58e-109 | 327 |
| Msa0457440 | AT2G45830.2 | 45.029 | 342 | 179 | 5 | 114 | 447 | 2 | 342 | 7.58e-109 | 327 |
| Msa0457440 | AT2G45830.5 | 45.029 | 342 | 179 | 5 | 114 | 447 | 2 | 342 | 7.58e-109 | 327 |
| Msa0457440 | AT3G61280.1 | 42.079 | 404 | 215 | 8 | 65 | 450 | 100 | 502 | 3.34e-108 | 330 |
| Msa0457440 | AT3G61270.2 | 44.898 | 343 | 181 | 5 | 114 | 449 | 2 | 343 | 9.02e-107 | 322 |
| Msa0457440 | AT3G61290.1 | 42.276 | 369 | 201 | 5 | 65 | 422 | 18 | 385 | 1.03e-100 | 308 |
| Msa0457440 | AT1G63420.2 | 46.264 | 348 | 167 | 7 | 34 | 368 | 117 | 457 | 1.20e-95 | 296 |
| Msa0457440 | AT3G61280.2 | 40.299 | 268 | 143 | 6 | 65 | 316 | 100 | 366 | 2.67e-64 | 212 |
Find 125 sgRNAs with CRISPR-Local
Find 293 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTGTGATTTCATGTTCT+TGG | 0.213856 | 3_3:+52239653 | None:intergenic |
| TGAGCACCTTGTTTAATATC+TGG | 0.236819 | 3_3:+52242353 | None:intergenic |
| GAGTAAACCAATACCTCTTT+TGG | 0.238348 | 3_3:+52240993 | None:intergenic |
| GAGTGATCTTACCTGTATTT+TGG | 0.311097 | 3_3:-52239717 | Msa0457440:three_prime_UTR |
| AGCTGCTAGAAGTGGCTTTC+AGG | 0.316955 | 3_3:-52242078 | Msa0457440:CDS |
| AAAGATTTCTAAAGGGCATT+TGG | 0.333379 | 3_3:-52243333 | Msa0457440:CDS |
| TCTACATTGCGCTTTATAGA+TGG | 0.333559 | 3_3:+52241032 | None:intergenic |
| CATGCCATGGTGTTGGTTCT+AGG | 0.338670 | 3_3:+52243555 | None:intergenic |
| GTTATACAGGCTGTGGCGTT+GGG | 0.344946 | 3_3:-52239981 | Msa0457440:intron |
| GTAAATTTATAGTGCCTTGT+AGG | 0.359268 | 3_3:-52239569 | Msa0457440:three_prime_UTR |
| GCAGACTCTGGCGGCAAAAC+AGG | 0.360476 | 3_3:-52243446 | Msa0457440:CDS |
| AGTCTCTTCGTCAAAGGATT+TGG | 0.360533 | 3_3:+52243523 | None:intergenic |
| TTCTTTACCTTCAACTGCCT+TGG | 0.360860 | 3_3:-52239856 | Msa0457440:CDS |
| GAAAAGAGGACAAGACTATA+TGG | 0.371649 | 3_3:-52239958 | Msa0457440:CDS |
| GTAGGGCTATGTTTACTGTT+TGG | 0.379991 | 3_3:-52243226 | Msa0457440:CDS |
| AACATGAAATCACAGTGATT+TGG | 0.382466 | 3_3:-52239648 | Msa0457440:three_prime_UTR |
| AGAATTGTCCGGATTTCTTC+CGG | 0.387434 | 3_3:-52243391 | Msa0457440:CDS |
| CCGGGCGATCCGGAAGGATC+TGG | 0.396077 | 3_3:-52243372 | Msa0457440:CDS |
| ATTATGCTTGTGTTCAAAGT+AGG | 0.401074 | 3_3:-52243244 | Msa0457440:CDS |
| GAATTGTCCGGATTTCTTCC+GGG | 0.403730 | 3_3:-52243390 | Msa0457440:CDS |
| CTGATTGGTCCTTCTGGGGA+TGG | 0.409600 | 3_3:-52243040 | Msa0457440:intron |
| GTTGTGACCAACCACTGTTC+CGG | 0.411905 | 3_3:+52243577 | None:intergenic |
| TTTACCTTCAACTGCCTTGG+AGG | 0.417789 | 3_3:-52239853 | Msa0457440:CDS |
| ATAAGAATCCGCTAGCCTAC+TGG | 0.419791 | 3_3:-52242313 | Msa0457440:CDS |
| TTTAAGAGAGCATACATTGC+GGG | 0.419841 | 3_3:-52239504 | Msa0457440:three_prime_UTR |
| TCCATGGCTCCAGATCCTTC+CGG | 0.423208 | 3_3:+52243363 | None:intergenic |
| GCATCTTTGGCGGCATAACT+AGG | 0.433738 | 3_3:+52243422 | None:intergenic |
| AAGGTGCTCAAGTTGTTAGT+TGG | 0.433746 | 3_3:-52242340 | Msa0457440:CDS |
| TACAGGGAGGGGTTTGTGAA+GGG | 0.434316 | 3_3:+52239760 | None:intergenic |
| CTATAAAGCGCAATGTAGAC+TGG | 0.437255 | 3_3:-52241028 | Msa0457440:CDS |
| TGTTGGAGGGAAGTTGTTTG+TGG | 0.437527 | 3_3:-52243273 | Msa0457440:CDS |
| GTTCTGTGGCACTAATTATA+CGG | 0.447164 | 3_3:-52241133 | Msa0457440:CDS |
| AATATCAAAGTGTTCCTTTG+TGG | 0.447861 | 3_3:+52243070 | None:intergenic |
| GCATTTAGAGTGGTGATTGT+TGG | 0.455309 | 3_3:-52243290 | Msa0457440:CDS |
| CATAGATCTAGAGGATCAAC+TGG | 0.457472 | 3_3:+52241056 | None:intergenic |
| GGATTTGATGTTTGATTGCA+TGG | 0.460183 | 3_3:-52243156 | Msa0457440:CDS |
| TGTTATACAGGCTGTGGCGT+TGG | 0.461771 | 3_3:-52239982 | Msa0457440:intron |
| GAGGGAAGTTGTTTGTGGAT+TGG | 0.463890 | 3_3:-52243268 | Msa0457440:CDS |
| CGAAGAGGAGAAGCAACATC+TGG | 0.468276 | 3_3:+52242281 | None:intergenic |
| CGGATTTCTTCCGGGCGATC+CGG | 0.468381 | 3_3:-52243382 | Msa0457440:CDS |
| AAGAAAACAAAGATTTCTAA+AGG | 0.469356 | 3_3:-52243341 | Msa0457440:CDS |
| GTACAGGGAGGGGTTTGTGA+AGG | 0.471260 | 3_3:+52239759 | None:intergenic |
| CAAGGTCGTATGTTTATCTC+TGG | 0.471296 | 3_3:+52242389 | None:intergenic |
| ACACAAGGTAAGAGATAAGT+AGG | 0.472695 | 3_3:+52243932 | None:intergenic |
| CAAACCTCCAAGGCAGTTGA+AGG | 0.474510 | 3_3:+52239849 | None:intergenic |
| CGGATCGCCCGGAAGAAATC+CGG | 0.474534 | 3_3:+52243383 | None:intergenic |
| CATCCCCAGAAGGACCAATC+AGG | 0.479414 | 3_3:+52243041 | None:intergenic |
| GGGAGCAGAAATTATGCGTC+AGG | 0.483405 | 3_3:-52242222 | Msa0457440:intron |
| GAGCACCTTGTTTAATATCT+GGG | 0.487238 | 3_3:+52242354 | None:intergenic |
| ACAGGGAGGGGTTTGTGAAG+GGG | 0.493392 | 3_3:+52239761 | None:intergenic |
| CCAGATCCTTCCGGATCGCC+CGG | 0.493659 | 3_3:+52243372 | None:intergenic |
| CTATGCAGGTTTGAGAGTAC+AGG | 0.493800 | 3_3:+52239743 | None:intergenic |
| CAGAAGGACCAATCAGGAAA+AGG | 0.495651 | 3_3:+52243047 | None:intergenic |
| AGAAAACAAAGATTTCTAAA+GGG | 0.497043 | 3_3:-52243340 | Msa0457440:CDS |
| GATGACGTAGCTAGCAGAAC+CGG | 0.498905 | 3_3:-52243596 | Msa0457440:CDS |
| GGGAGACAGTTGATCTACTA+AGG | 0.505359 | 3_3:+52239781 | None:intergenic |
| TTGCAATGATTCTATGAAGT+GGG | 0.505910 | 3_3:-52242243 | Msa0457440:CDS |
| TTGAAATATATTCTCTCATG+TGG | 0.512101 | 3_3:-52241155 | Msa0457440:CDS |
| CTGTCGAGTCTCTTCGTCAA+AGG | 0.512576 | 3_3:+52243517 | None:intergenic |
| ACATGTGGTTCTGCAGACTC+TGG | 0.513486 | 3_3:-52243458 | Msa0457440:CDS |
| AACTGCCTTGGAGGTTTGCG+AGG | 0.514594 | 3_3:-52239844 | Msa0457440:CDS |
| CACAGACCATGCATACCCTT+CGG | 0.523281 | 3_3:+52241181 | None:intergenic |
| TTATGCTTGTGTTCAAAGTA+GGG | 0.528660 | 3_3:-52243243 | Msa0457440:CDS |
| TCAAACATCAAATCCACATC+AGG | 0.529307 | 3_3:+52243164 | None:intergenic |
| TGCAAAACCACAGAATTGTC+CGG | 0.531065 | 3_3:-52243402 | Msa0457440:CDS |
| GATTTCTAAAGGGCATTTGG+TGG | 0.532876 | 3_3:-52243330 | Msa0457440:CDS |
| TTTCCTGATTGGTCCTTCTG+GGG | 0.540209 | 3_3:-52243044 | Msa0457440:CDS |
| TAAGATCACTCACTCTATGC+AGG | 0.541245 | 3_3:+52239729 | None:intergenic |
| GCTGTGGCGTTGGGGAAAAG+AGG | 0.541635 | 3_3:-52239972 | Msa0457440:CDS |
| TTTGAGAAGGTATCCTGGGT+TGG | 0.542124 | 3_3:-52243189 | Msa0457440:CDS |
| TCCTGGGTTGGTACCTGATG+TGG | 0.543537 | 3_3:-52243177 | Msa0457440:CDS |
| TTACATGTTCCACCTTATCT+CGG | 0.545308 | 3_3:-52239907 | Msa0457440:CDS |
| AAGGCAGTTGAAGGTAAAGA+AGG | 0.552597 | 3_3:+52239858 | None:intergenic |
| CAGGTTTGAGAGTACAGGGA+GGG | 0.554303 | 3_3:+52239748 | None:intergenic |
| TATTCTCTCATGTGGTTCTG+TGG | 0.555138 | 3_3:-52241147 | Msa0457440:CDS |
| TTGAGTATTCCGAGATAAGG+TGG | 0.555834 | 3_3:+52239898 | None:intergenic |
| AAGAGATAAGTAGGGGTACG+AGG | 0.558927 | 3_3:+52243941 | None:intergenic |
| TCTTCGTCAAAGGATTTGGT+AGG | 0.563348 | 3_3:+52243527 | None:intergenic |
| GGGAAACAAGCACCCAAAAG+AGG | 0.565209 | 3_3:-52241006 | Msa0457440:intron |
| TTTGTAGTGGAACAAGGCCA+CGG | 0.569197 | 3_3:+52241087 | None:intergenic |
| TTTAGAGTGGTGATTGTTGG+AGG | 0.569528 | 3_3:-52243287 | Msa0457440:CDS |
| TCCGGAAGGATCTGGAGCCA+TGG | 0.571012 | 3_3:-52243364 | Msa0457440:CDS |
| CACAAGGTAAGAGATAAGTA+GGG | 0.575100 | 3_3:+52243933 | None:intergenic |
| TTTCTTCCGGGCGATCCGGA+AGG | 0.582525 | 3_3:-52243378 | Msa0457440:CDS |
| TATAAAGCGCAATGTAGACT+GGG | 0.584629 | 3_3:-52241027 | Msa0457440:CDS |
| CTTGCAATGATTCTATGAAG+TGG | 0.586888 | 3_3:-52242244 | Msa0457440:CDS |
| ATAGATGGACATAGATCTAG+AGG | 0.588886 | 3_3:+52241047 | None:intergenic |
| AGCAGAACCGGAACAGTGGT+TGG | 0.590052 | 3_3:-52243584 | Msa0457440:CDS |
| TTGTAGTGGAACAAGGCCAC+GGG | 0.590446 | 3_3:+52241088 | None:intergenic |
| TTAGAGTGGTGATTGTTGGA+GGG | 0.593036 | 3_3:-52243286 | Msa0457440:CDS |
| TTTCCTTTCCAGTAGGCTAG+CGG | 0.593603 | 3_3:+52242305 | None:intergenic |
| CTCATCAGCAAAGCAAAGAA+CGG | 0.595528 | 3_3:+52239818 | None:intergenic |
| ATCTGGATTTCCTTTCCAGT+AGG | 0.596042 | 3_3:+52242298 | None:intergenic |
| TCTGGGAACTCTTCTTGCCA+AGG | 0.605793 | 3_3:+52242371 | None:intergenic |
| GTGGTACAATAACGAAACAA+TGG | 0.607488 | 3_3:+52243089 | None:intergenic |
| GTAAGTAATTCAGTACGAAG+AGG | 0.609755 | 3_3:+52242266 | None:intergenic |
| TGGGATGCAGCTGCTAGAAG+TGG | 0.610423 | 3_3:-52242086 | Msa0457440:CDS |
| GATATAAGATCTACGCCGAA+GGG | 0.612550 | 3_3:-52241196 | Msa0457440:CDS |
| GGATTCCTCGCAAACCTCCA+AGG | 0.616375 | 3_3:+52239839 | None:intergenic |
| GCTTTGCTGATGAGAAGCAG+AGG | 0.616426 | 3_3:-52239809 | Msa0457440:CDS |
| CAGAGATAAACATACGACCT+TGG | 0.617677 | 3_3:-52242388 | Msa0457440:CDS |
| AAGAAATCCGGACAATTCTG+TGG | 0.618468 | 3_3:+52243395 | None:intergenic |
| CAATAACGAAACAATGGCAA+AGG | 0.620576 | 3_3:+52243095 | None:intergenic |
| TTATACAGGCTGTGGCGTTG+GGG | 0.620858 | 3_3:-52239980 | Msa0457440:intron |
| AATCCGCTAGCCTACTGGAA+AGG | 0.622557 | 3_3:-52242308 | Msa0457440:CDS |
| TTTCGAAACAGTGTAATCAC+AGG | 0.628103 | 3_3:-52242046 | Msa0457440:intron |
| GTTTCGTTATTGTACCACAA+AGG | 0.629278 | 3_3:-52243084 | Msa0457440:CDS |
| AGGTTTGAGAGTACAGGGAG+GGG | 0.631423 | 3_3:+52239749 | None:intergenic |
| TCCACATCAGGTACCAACCC+AGG | 0.632399 | 3_3:+52243176 | None:intergenic |
| AGATATAAGATCTACGCCGA+AGG | 0.635102 | 3_3:-52241197 | Msa0457440:CDS |
| TCTACGCCGAAGGGTATGCA+TGG | 0.646755 | 3_3:-52241187 | Msa0457440:CDS |
| AAAGTATGCTGCATTTAGAG+TGG | 0.648495 | 3_3:-52243300 | Msa0457440:CDS |
| TGCAATGATTCTATGAAGTG+GGG | 0.649047 | 3_3:-52242242 | Msa0457440:CDS |
| TATGCAGGTTTGAGAGTACA+GGG | 0.650267 | 3_3:+52239744 | None:intergenic |
| GAGATCTTACCATCCCCAGA+AGG | 0.656796 | 3_3:+52243031 | None:intergenic |
| TGTGGTTCTGCAGACTCTGG+CGG | 0.669254 | 3_3:-52243455 | Msa0457440:CDS |
| CAGTGCTCTTACCTCACATG+TGG | 0.669414 | 3_3:-52243473 | Msa0457440:CDS |
| AGCTAGCAGAACCGGAACAG+TGG | 0.672275 | 3_3:-52243588 | Msa0457440:CDS |
| GAGTTCCCAGATATTAAACA+AGG | 0.680944 | 3_3:-52242359 | Msa0457440:CDS |
| AGTCTGCAGAACCACATGTG+AGG | 0.692795 | 3_3:+52243462 | None:intergenic |
| ATTTAAGAGAGCATACATTG+CGG | 0.694395 | 3_3:-52239505 | Msa0457440:three_prime_UTR |
| ATAAAGCGCAATGTAGACTG+GGG | 0.695085 | 3_3:-52241026 | Msa0457440:CDS |
| ACAAGGTAAGAGATAAGTAG+GGG | 0.710845 | 3_3:+52243934 | None:intergenic |
| ACAACCTAGAACCAACACCA+TGG | 0.713734 | 3_3:-52243559 | Msa0457440:CDS |
| GCAGGTTTGAGAGTACAGGG+AGG | 0.761535 | 3_3:+52239747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATATATTAATATCAATTA+TGG | - | chr3_3:52240546-52240565 | Msa0457440:intron | 10.0% |
| !!! | AAAAAATTGTATTTTGAAAA+CGG | + | chr3_3:52241614-52241633 | None:intergenic | 10.0% |
| !!! | TGATATTTTTTCAATATTTA+AGG | - | chr3_3:52242803-52242822 | Msa0457440:intron | 10.0% |
| !!! | TGTATTATTTCTATTATAAA+AGG | + | chr3_3:52243054-52243073 | None:intergenic | 10.0% |
| !! | TTATAATAGAAATAATACAT+AGG | - | chr3_3:52243055-52243074 | Msa0457440:CDS | 10.0% |
| !!! | TGATAATAATTTTAGAAAAC+TGG | - | chr3_3:52240624-52240643 | Msa0457440:intron | 15.0% |
| !! | TAAACAGCAATAAATATTAA+TGG | + | chr3_3:52240902-52240921 | None:intergenic | 15.0% |
| !!! | AATTGAATTACTGATTTTAA+AGG | - | chr3_3:52240944-52240963 | Msa0457440:intron | 15.0% |
| !!! | AAAAATTGTATTTTGAAAAC+GGG | + | chr3_3:52241613-52241632 | None:intergenic | 15.0% |
| !! | AAAATTAACAAATTCTTGAA+GGG | - | chr3_3:52242632-52242651 | Msa0457440:intron | 15.0% |
| !! | TAATTTCTATTATACCATTA+GGG | + | chr3_3:52243140-52243159 | None:intergenic | 15.0% |
| !! | ATAATTTCTATTATACCATT+AGG | + | chr3_3:52243141-52243160 | None:intergenic | 15.0% |
| !! | TAATTTCTATTATACCATTA+GGG | + | chr3_3:52243140-52243159 | None:intergenic | 15.0% |
| !! | ACATAATTAATCAAATTCAT+TGG | + | chr3_3:52243424-52243443 | None:intergenic | 15.0% |
| !!! | TTGTTTTTATATTGTTATAC+AGG | - | chr3_3:52243446-52243465 | Msa0457440:CDS | 15.0% |
| !!! | TCATAGTTTTAACGATATAA+GGG | + | chr3_3:52239608-52239627 | None:intergenic | 20.0% |
| !!! | TTCATAGTTTTAACGATATA+AGG | + | chr3_3:52239609-52239628 | None:intergenic | 20.0% |
| !!! | TTTGTGTAATTTTATCAAAC+AGG | - | chr3_3:52239819-52239838 | Msa0457440:CDS | 20.0% |
| !! | AAGAAAACAAAGATTTCTAA+AGG | - | chr3_3:52240099-52240118 | Msa0457440:intron | 20.0% |
| !! | AGAAAACAAAGATTTCTAAA+GGG | - | chr3_3:52240100-52240119 | Msa0457440:intron | 20.0% |
| !! | AGAATGAAATATTGATGAAA+AGG | + | chr3_3:52240459-52240478 | None:intergenic | 20.0% |
| !!! | AATACTAAGTGTTATTTGAT+TGG | - | chr3_3:52240493-52240512 | Msa0457440:intron | 20.0% |
| !! | AAGTAAATAATCTCAATTGT+AGG | - | chr3_3:52240810-52240829 | Msa0457440:intron | 20.0% |
| !!! | ATTTTAAAGGAATCAAATGA+GGG | - | chr3_3:52240957-52240976 | Msa0457440:intron | 20.0% |
| !!! | TCAATAGCAGATTTAAAATA+TGG | - | chr3_3:52241998-52242017 | Msa0457440:intron | 20.0% |
| !! | TAAATTGCTTAATTGCAATT+TGG | + | chr3_3:52242059-52242078 | None:intergenic | 20.0% |
| !! | CAAAATTAACAAATTCTTGA+AGG | - | chr3_3:52242631-52242650 | Msa0457440:intron | 20.0% |
| !!! | ACAAAAACATTCATTTTGAT+TGG | + | chr3_3:52242757-52242776 | None:intergenic | 20.0% |
| !! | TCAATATTTAAGGAAAAACA+TGG | - | chr3_3:52242813-52242832 | Msa0457440:intron | 20.0% |
| !! | CTAATTTCTATTATACCATT+AGG | + | chr3_3:52243233-52243252 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTACTACTAACAA+TGG | + | chr3_3:52243836-52243855 | None:intergenic | 20.0% |
| !! | TTAGTAGTAAAAGAAAAAGT+TGG | - | chr3_3:52243839-52243858 | Msa0457440:intron | 20.0% |
| !! | TGATAGACAAGATCAATTTT+TGG | - | chr3_3:52240707-52240726 | Msa0457440:intron | 25.0% |
| !!! | GATTTTAAAGGAATCAAATG+AGG | - | chr3_3:52240956-52240975 | Msa0457440:intron | 25.0% |
| !!! | TGTTGTTTGTTTTGATGATT+TGG | - | chr3_3:52240982-52241001 | Msa0457440:intron | 25.0% |
| ! | ATTAATGTCCAATTTGTGAA+AGG | + | chr3_3:52241257-52241276 | None:intergenic | 25.0% |
| !!! | TATATTTTGATATGCATTGC+AGG | - | chr3_3:52241329-52241348 | Msa0457440:intron | 25.0% |
| ! | TTATAATCCATCTTCTTAGT+TGG | + | chr3_3:52241472-52241491 | None:intergenic | 25.0% |
| ! | TAATGCTCACAAAATATACA+TGG | - | chr3_3:52241489-52241508 | Msa0457440:intron | 25.0% |
| !! | ATAGCAGATTTAAAATATGG+AGG | - | chr3_3:52242001-52242020 | Msa0457440:intron | 25.0% |
| !! | TTTAGAAGTTACAGTGATTT+TGG | - | chr3_3:52242100-52242119 | Msa0457440:intron | 25.0% |
| ! | TTGAAATATATTCTCTCATG+TGG | - | chr3_3:52242285-52242304 | Msa0457440:CDS | 25.0% |
| ! | GGAAAAACATGGTTATTATT+AGG | - | chr3_3:52242824-52242843 | Msa0457440:intron | 25.0% |
| !! | TAAGCATAAAAGGTTTGTTT+AGG | - | chr3_3:52242891-52242910 | Msa0457440:intron | 25.0% |
| !! | AATTGAGTTGTTTATCCAAA+CGG | - | chr3_3:52243113-52243132 | Msa0457440:CDS | 25.0% |
| ! | GTATAATAGAAATTATGTGC+TGG | - | chr3_3:52243145-52243164 | Msa0457440:CDS | 25.0% |
| ! | TGGTATAATAGAAATTAGTG+TGG | - | chr3_3:52243235-52243254 | Msa0457440:CDS | 25.0% |
| ! | TATAATAGAAATTAGTGTGG+TGG | - | chr3_3:52243238-52243257 | Msa0457440:CDS | 25.0% |
| ! | ACTAGCAGTATAAAATTGAT+AGG | + | chr3_3:52243336-52243355 | None:intergenic | 25.0% |
| ! | CAATAATTGAAGAAAACTTG+AGG | + | chr3_3:52243361-52243380 | None:intergenic | 25.0% |
| !! | CTTTTAAATGATTACCTACA+AGG | + | chr3_3:52243888-52243907 | None:intergenic | 25.0% |
| TATAAGGGAAATTGAGAAGT+GGG | + | chr3_3:52239593-52239612 | None:intergenic | 30.0% | |
| ATATAAGGGAAATTGAGAAG+TGG | + | chr3_3:52239594-52239613 | None:intergenic | 30.0% | |
| ! | GTGTAATTTTATCAAACAGG+TGG | - | chr3_3:52239822-52239841 | Msa0457440:CDS | 30.0% |
| ! | ACTGTATAATTTTGTAGGCT+CGG | + | chr3_3:52239951-52239970 | None:intergenic | 30.0% |
| !!! | AGAGCACTGTATAATTTTGT+AGG | + | chr3_3:52239956-52239975 | None:intergenic | 30.0% |
| !!! | GAAATCTTTGTTTTCTTCCA+TGG | + | chr3_3:52240096-52240115 | None:intergenic | 30.0% |
| !! | AAAGATTTCTAAAGGGCATT+TGG | - | chr3_3:52240107-52240126 | Msa0457440:intron | 30.0% |
| ATTATGCTTGTGTTCAAAGT+AGG | - | chr3_3:52240196-52240215 | Msa0457440:intron | 30.0% | |
| TTATGCTTGTGTTCAAAGTA+GGG | - | chr3_3:52240197-52240216 | Msa0457440:intron | 30.0% | |
| !! | TGTTCTGTTTTGTTAATGCT+AGG | + | chr3_3:52240315-52240334 | None:intergenic | 30.0% |
| ! | AATATCAAAGTGTTCCTTTG+TGG | + | chr3_3:52240373-52240392 | None:intergenic | 30.0% |
| ! | TTGATATTCCTTTTCCTGAT+TGG | - | chr3_3:52240385-52240404 | Msa0457440:intron | 30.0% |
| !! | ACAAGATCAATTTTTGGACT+AGG | - | chr3_3:52240713-52240732 | Msa0457440:intron | 30.0% |
| TGATTGTGTTGAACATTTGT+TGG | - | chr3_3:52241023-52241042 | Msa0457440:CDS | 30.0% | |
| TTGCAATGATTCTATGAAGT+GGG | - | chr3_3:52241197-52241216 | Msa0457440:CDS | 30.0% | |
| TACATCAGACAACTAAAGTT+TGG | + | chr3_3:52241311-52241330 | None:intergenic | 30.0% | |
| AATTACACCAACTAAGAAGA+TGG | - | chr3_3:52241462-52241481 | Msa0457440:intron | 30.0% | |
| ! | ACATGGCTTAATTGCAATTT+TGG | - | chr3_3:52241549-52241568 | Msa0457440:intron | 30.0% |
| !! | ATTGTATTTTGAAAACGGGA+GGG | + | chr3_3:52241609-52241628 | None:intergenic | 30.0% |
| !! | AATTGTATTTTGAAAACGGG+AGG | + | chr3_3:52241610-52241629 | None:intergenic | 30.0% |
| ATTCATGATAATCCGTCATT+GGG | + | chr3_3:52241739-52241758 | None:intergenic | 30.0% | |
| AATTCATGATAATCCGTCAT+TGG | + | chr3_3:52241740-52241759 | None:intergenic | 30.0% | |
| !! | TATGAAATTCTAGTTTCCTG+TGG | - | chr3_3:52241767-52241786 | Msa0457440:intron | 30.0% |
| TGTCGTAGAAACAAACTTAT+GGG | - | chr3_3:52241811-52241830 | Msa0457440:intron | 30.0% | |
| ! | TTTTAAATCTGCTATTGACG+TGG | + | chr3_3:52241996-52242015 | None:intergenic | 30.0% |
| ! | CACATATTTTCACTCGTTTA+CGG | + | chr3_3:52242034-52242053 | None:intergenic | 30.0% |
| ! | CAGTGATTTTGGATGTTATT+TGG | - | chr3_3:52242111-52242130 | Msa0457440:intron | 30.0% |
| GTGAAAAAATCTTCATACTG+CGG | + | chr3_3:52242333-52242352 | None:intergenic | 30.0% | |
| !! | AAAAGTTTTGTAGTGGAACA+AGG | + | chr3_3:52242362-52242381 | None:intergenic | 30.0% |
| !! | ACTGGTAAAAAGTTTTGTAG+TGG | + | chr3_3:52242369-52242388 | None:intergenic | 30.0% |
| ! | AGTAAACCAATACCTCTTTT+GGG | + | chr3_3:52242449-52242468 | None:intergenic | 30.0% |
| ATGGATCAAAACTAAATGAC+AGG | + | chr3_3:52242486-52242505 | None:intergenic | 30.0% | |
| !!! | TCATTTAGTTTTGATCCATG+TGG | - | chr3_3:52242487-52242506 | Msa0457440:intron | 30.0% |
| CACAAAGAATAGAACTATAC+TGG | + | chr3_3:52242514-52242533 | None:intergenic | 30.0% | |
| ! | AGCAGGTTTTTATAAGACAT+GGG | + | chr3_3:52242550-52242569 | None:intergenic | 30.0% |
| !!! | TAAATACAAGAGTTTTGAGC+AGG | + | chr3_3:52242567-52242586 | None:intergenic | 30.0% |
| GGCTTATTCATAAGCATAAA+AGG | - | chr3_3:52242881-52242900 | Msa0457440:intron | 30.0% | |
| ! | CATAAAAGGTTTGTTTAGGT+TGG | - | chr3_3:52242895-52242914 | Msa0457440:intron | 30.0% |
| AGCATAAGTGCTTATCATAT+AGG | + | chr3_3:52243083-52243102 | None:intergenic | 30.0% | |
| AACAAATCAGCTATGTTTCA+TGG | + | chr3_3:52243198-52243217 | None:intergenic | 30.0% | |
| TAACATGGAGTAATCAAACT+AGG | + | chr3_3:52243309-52243328 | None:intergenic | 30.0% | |
| AAATTGATAGGTGACTAACA+TGG | + | chr3_3:52243324-52243343 | None:intergenic | 30.0% | |
| TTATATTGTTATACAGGCTG+TGG | - | chr3_3:52243452-52243471 | Msa0457440:CDS | 30.0% | |
| ! | ATTTTTGTGCACCAAAATAC+AGG | + | chr3_3:52243737-52243756 | None:intergenic | 30.0% |
| AACATGAAATCACAGTGATT+TGG | - | chr3_3:52243792-52243811 | Msa0457440:intron | 30.0% | |
| GTAAATTTATAGTGCCTTGT+AGG | - | chr3_3:52243871-52243890 | Msa0457440:intron | 30.0% | |
| ! | ATTTAAGAGAGCATACATTG+CGG | - | chr3_3:52243935-52243954 | Msa0457440:CDS | 30.0% |
| ACAAGGTAAGAGATAAGTAG+GGG | + | chr3_3:52239509-52239528 | None:intergenic | 35.0% | |
| CACAAGGTAAGAGATAAGTA+GGG | + | chr3_3:52239510-52239529 | None:intergenic | 35.0% | |
| ACACAAGGTAAGAGATAAGT+AGG | + | chr3_3:52239511-52239530 | None:intergenic | 35.0% | |
| AAAGAAAGAGCAATGACACA+AGG | + | chr3_3:52239526-52239545 | None:intergenic | 35.0% | |
| TACATGTTTGTGTTTGTGTC+TGG | + | chr3_3:52239641-52239660 | None:intergenic | 35.0% | |
| GACACAAACACAAACATGTA+TGG | - | chr3_3:52239641-52239660 | Msa0457440:three_prime_UTR | 35.0% | |
| CTACAGAGGAACAATTTGAA+GGG | - | chr3_3:52239688-52239707 | Msa0457440:three_prime_UTR | 35.0% | |
| TATATGTATCAGTGTCGTGT+CGG | - | chr3_3:52239729-52239748 | Msa0457440:exon | 35.0% | |
| !! | ATTCTGTGGTTTTGCATCTT+TGG | + | chr3_3:52240034-52240053 | None:intergenic | 35.0% |
| AAAGTATGCTGCATTTAGAG+TGG | - | chr3_3:52240140-52240159 | Msa0457440:intron | 35.0% | |
| TCAAACATCAAATCCACATC+AGG | + | chr3_3:52240279-52240298 | None:intergenic | 35.0% | |
| GGATTTGATGTTTGATTGCA+TGG | - | chr3_3:52240284-52240303 | Msa0457440:intron | 35.0% | |
| CAATAACGAAACAATGGCAA+AGG | + | chr3_3:52240348-52240367 | None:intergenic | 35.0% | |
| GTGGTACAATAACGAAACAA+TGG | + | chr3_3:52240354-52240373 | None:intergenic | 35.0% | |
| GTTTCGTTATTGTACCACAA+AGG | - | chr3_3:52240356-52240375 | Msa0457440:intron | 35.0% | |
| GGATGGTAAGATCTCAATTA+GGG | - | chr3_3:52240417-52240436 | Msa0457440:intron | 35.0% | |
| GAGTTCCCAGATATTAAACA+AGG | - | chr3_3:52241081-52241100 | Msa0457440:CDS | 35.0% | |
| ! | GAGCACCTTGTTTAATATCT+GGG | + | chr3_3:52241089-52241108 | None:intergenic | 35.0% |
| ! | TGAGCACCTTGTTTAATATC+TGG | + | chr3_3:52241090-52241109 | None:intergenic | 35.0% |
| GTAAGTAATTCAGTACGAAG+AGG | + | chr3_3:52241177-52241196 | None:intergenic | 35.0% | |
| CTTGCAATGATTCTATGAAG+TGG | - | chr3_3:52241196-52241215 | Msa0457440:CDS | 35.0% | |
| TGCAATGATTCTATGAAGTG+GGG | - | chr3_3:52241198-52241217 | Msa0457440:CDS | 35.0% | |
| TTTGATATGCATTGCAGGAT+TGG | - | chr3_3:52241334-52241353 | Msa0457440:intron | 35.0% | |
| TTGATATGCATTGCAGGATT+GGG | - | chr3_3:52241335-52241354 | Msa0457440:intron | 35.0% | |
| TTTCGAAACAGTGTAATCAC+AGG | - | chr3_3:52241394-52241413 | Msa0457440:intron | 35.0% | |
| ! | ACTGTTTTGCTCAGTTAAGA+CGG | - | chr3_3:52241512-52241531 | Msa0457440:intron | 35.0% |
| CGGCAATGCTTAATTATACA+TGG | - | chr3_3:52241532-52241551 | Msa0457440:intron | 35.0% | |
| TTATGTGAGCGAGTGAAAAT+AGG | + | chr3_3:52241579-52241598 | None:intergenic | 35.0% | |
| ! | TTTTCACTCGCTCACATAAT+TGG | - | chr3_3:52241580-52241599 | Msa0457440:intron | 35.0% |
| !! | TTGTATTTTGAAAACGGGAG+GGG | + | chr3_3:52241608-52241627 | None:intergenic | 35.0% |
| ! | TCAGATTTTAGACCCAAAAG+CGG | - | chr3_3:52241645-52241664 | Msa0457440:intron | 35.0% |
| CTGTCGTAGAAACAAACTTA+TGG | - | chr3_3:52241810-52241829 | Msa0457440:intron | 35.0% | |
| AATCATCCAGATGAGAGAAT+TGG | + | chr3_3:52241953-52241972 | None:intergenic | 35.0% | |
| TCATCTGGATGATTCTATAC+TGG | - | chr3_3:52241959-52241978 | Msa0457440:intron | 35.0% | |
| ! | TTTTCACTCGTTTACGGAAT+TGG | + | chr3_3:52242028-52242047 | None:intergenic | 35.0% |
| CGTAAACGAGTGAAAATATG+TGG | - | chr3_3:52242032-52242051 | Msa0457440:intron | 35.0% | |
| ! | ATCAAAAGAGTGTGAAGCAA+AGG | + | chr3_3:52242210-52242229 | None:intergenic | 35.0% |
| GTTCTGTGGCACTAATTATA+CGG | - | chr3_3:52242307-52242326 | Msa0457440:CDS | 35.0% | |
| !!! | TATGAAGATTTTTTCACCCG+TGG | - | chr3_3:52242336-52242355 | Msa0457440:CDS | 35.0% |
| ATAGATGGACATAGATCTAG+AGG | + | chr3_3:52242396-52242415 | None:intergenic | 35.0% | |
| TCTACATTGCGCTTTATAGA+TGG | + | chr3_3:52242411-52242430 | None:intergenic | 35.0% | |
| TATAAAGCGCAATGTAGACT+GGG | - | chr3_3:52242413-52242432 | Msa0457440:intron | 35.0% | |
| ! | GAGTAAACCAATACCTCTTT+TGG | + | chr3_3:52242450-52242469 | None:intergenic | 35.0% |
| ! | GAGCAGGTTTTTATAAGACA+TGG | + | chr3_3:52242551-52242570 | None:intergenic | 35.0% |
| ACAATGCTAAACATGTGACA+AGG | + | chr3_3:52242690-52242709 | None:intergenic | 35.0% | |
| !! | TGACCACAAAAGCTTTGTTT+AGG | - | chr3_3:52242856-52242875 | Msa0457440:intron | 35.0% |
| ! | CAACCTAAACAAAGCTTTTG+TGG | + | chr3_3:52242862-52242881 | None:intergenic | 35.0% |
| !! | CACAAAAGCTTTGTTTAGGT+TGG | - | chr3_3:52242860-52242879 | Msa0457440:intron | 35.0% |
| !! | TTTTTGAGAGAGCATATGAC+AGG | - | chr3_3:52242957-52242976 | Msa0457440:intron | 35.0% |
| ATTATACCATTAGGGCTGTT+TGG | + | chr3_3:52243224-52243243 | None:intergenic | 35.0% | |
| GAAAAGAGGACAAGACTATA+TGG | - | chr3_3:52243482-52243501 | Msa0457440:CDS | 35.0% | |
| TTACATGTTCCACCTTATCT+CGG | - | chr3_3:52243533-52243552 | Msa0457440:CDS | 35.0% | |
| !! | GTTTTGAGTATTCCGAGATA+AGG | + | chr3_3:52243548-52243567 | None:intergenic | 35.0% |
| ! | GAGTGATCTTACCTGTATTT+TGG | - | chr3_3:52243723-52243742 | Msa0457440:intron | 35.0% |
| TCACTGTGATTTCATGTTCT+TGG | + | chr3_3:52243790-52243809 | None:intergenic | 35.0% | |
| ! | TTTAAGAGAGCATACATTGC+GGG | - | chr3_3:52243936-52243955 | Msa0457440:CDS | 35.0% |
| CCTTCAAATTGTTCCTCTGT+AGG | + | chr3_3:52239690-52239709 | None:intergenic | 40.0% | |
| CCTACAGAGGAACAATTTGA+AGG | - | chr3_3:52239687-52239706 | Msa0457440:three_prime_UTR | 40.0% | |
| TTGGTAGGAAAAACATGCCA+TGG | + | chr3_3:52239901-52239920 | None:intergenic | 40.0% | |
| ! | TCTTCGTCAAAGGATTTGGT+AGG | + | chr3_3:52239916-52239935 | None:intergenic | 40.0% |
| AGTCTCTTCGTCAAAGGATT+TGG | + | chr3_3:52239920-52239939 | None:intergenic | 40.0% | |
| TGCAAAACCACAGAATTGTC+CGG | - | chr3_3:52240038-52240057 | Msa0457440:intron | 40.0% | |
| AAGAAATCCGGACAATTCTG+TGG | + | chr3_3:52240048-52240067 | None:intergenic | 40.0% | |
| AGAATTGTCCGGATTTCTTC+CGG | - | chr3_3:52240049-52240068 | Msa0457440:intron | 40.0% | |
| !! | GATTTCTAAAGGGCATTTGG+TGG | - | chr3_3:52240110-52240129 | Msa0457440:intron | 40.0% |
| ! | GCATTTAGAGTGGTGATTGT+TGG | - | chr3_3:52240150-52240169 | Msa0457440:intron | 40.0% |
| ! | TTTAGAGTGGTGATTGTTGG+AGG | - | chr3_3:52240153-52240172 | Msa0457440:intron | 40.0% |
| TTAGAGTGGTGATTGTTGGA+GGG | - | chr3_3:52240154-52240173 | Msa0457440:intron | 40.0% | |
| GTAGGGCTATGTTTACTGTT+TGG | - | chr3_3:52240214-52240233 | Msa0457440:intron | 40.0% | |
| !! | GTTTGTTGCAGCTTTTGAGA+AGG | - | chr3_3:52240238-52240257 | Msa0457440:intron | 40.0% |
| !!! | AGCTTTTGAGAAGGTATCCT+GGG | - | chr3_3:52240247-52240266 | Msa0457440:intron | 40.0% |
| !! | TTTTCCTGATTGGTCCTTCT+GGG | - | chr3_3:52240395-52240414 | Msa0457440:intron | 40.0% |
| GGGATGGTAAGATCTCAATT+AGG | - | chr3_3:52240416-52240435 | Msa0457440:intron | 40.0% | |
| ACGTGAATTGCTCACTTTAG+AGG | + | chr3_3:52240783-52240802 | None:intergenic | 40.0% | |
| AAGTGAGCAATTCACGTTAG+AGG | - | chr3_3:52240786-52240805 | Msa0457440:intron | 40.0% | |
| ! | GTGTTGAACATTTGTTGGTC+AGG | - | chr3_3:52241028-52241047 | Msa0457440:CDS | 40.0% |
| CAAGGTCGTATGTTTATCTC+TGG | + | chr3_3:52241054-52241073 | None:intergenic | 40.0% | |
| CAGAGATAAACATACGACCT+TGG | - | chr3_3:52241052-52241071 | Msa0457440:CDS | 40.0% | |
| ! | AAGGTGCTCAAGTTGTTAGT+TGG | - | chr3_3:52241100-52241119 | Msa0457440:CDS | 40.0% |
| ATCTGGATTTCCTTTCCAGT+AGG | + | chr3_3:52241145-52241164 | None:intergenic | 40.0% | |
| TGCAATGGCCTTTCACAAAT+TGG | - | chr3_3:52241246-52241265 | Msa0457440:intron | 40.0% | |
| !! | TGTATTTTGAAAACGGGAGG+GGG | + | chr3_3:52241607-52241626 | None:intergenic | 40.0% |
| ! | TGGGTCTAAAATCTGAGTGA+GGG | + | chr3_3:52241641-52241660 | None:intergenic | 40.0% |
| ! | TTGGGTCTAAAATCTGAGTG+AGG | + | chr3_3:52241642-52241661 | None:intergenic | 40.0% |
| ATTGACATGACGAGCATGTT+TGG | - | chr3_3:52241685-52241704 | Msa0457440:intron | 40.0% | |
| TCATTTCTACGTCCCAATGA+CGG | - | chr3_3:52241724-52241743 | Msa0457440:intron | 40.0% | |
| AACCTGTTGTAGAATCGTCT+TGG | - | chr3_3:52241840-52241859 | Msa0457440:intron | 40.0% | |
| !! | AGAATTGGAGTTGGTGAAGA+GGG | + | chr3_3:52241938-52241957 | None:intergenic | 40.0% |
| TTCGGCGTAGATCTTATATC+TGG | + | chr3_3:52242244-52242263 | None:intergenic | 40.0% | |
| AGATATAAGATCTACGCCGA+AGG | - | chr3_3:52242243-52242262 | Msa0457440:CDS | 40.0% | |
| GATATAAGATCTACGCCGAA+GGG | - | chr3_3:52242244-52242263 | Msa0457440:CDS | 40.0% | |
| ! | TATTCTCTCATGTGGTTCTG+TGG | - | chr3_3:52242293-52242312 | Msa0457440:CDS | 40.0% |
| CATAGATCTAGAGGATCAAC+TGG | + | chr3_3:52242387-52242406 | None:intergenic | 40.0% | |
| CTATAAAGCGCAATGTAGAC+TGG | - | chr3_3:52242412-52242431 | Msa0457440:intron | 40.0% | |
| ATAAAGCGCAATGTAGACTG+GGG | - | chr3_3:52242414-52242433 | Msa0457440:intron | 40.0% | |
| TAGAACTATACTGGTCCACA+TGG | + | chr3_3:52242505-52242524 | None:intergenic | 40.0% | |
| ! | AAGCTAGCTTGGAAAGCTTA+TGG | + | chr3_3:52242984-52243003 | None:intergenic | 40.0% |
| GTTGTTTACACAAGCTAGCT+TGG | + | chr3_3:52242995-52243014 | None:intergenic | 40.0% | |
| TTTATCCAAACGGACCCTAA+TGG | - | chr3_3:52243123-52243142 | Msa0457440:CDS | 40.0% | |
| TTATACCATTAGGGTCCGTT+TGG | + | chr3_3:52243131-52243150 | None:intergenic | 40.0% | |
| GTTTATCCAAACAGCCCTAA+TGG | - | chr3_3:52243215-52243234 | Msa0457440:CDS | 40.0% | |
| CTAGGATCAGCTATGTTTCA+TGG | + | chr3_3:52243291-52243310 | None:intergenic | 40.0% | |
| TTGAGTATTCCGAGATAAGG+TGG | + | chr3_3:52243545-52243564 | None:intergenic | 40.0% | |
| AAGGCAGTTGAAGGTAAAGA+AGG | + | chr3_3:52243585-52243604 | None:intergenic | 40.0% | |
| TTCTTTACCTTCAACTGCCT+TGG | - | chr3_3:52243584-52243603 | Msa0457440:CDS | 40.0% | |
| CTCATCAGCAAAGCAAAGAA+CGG | + | chr3_3:52243625-52243644 | None:intergenic | 40.0% | |
| ! | TATGCAGGTTTGAGAGTACA+GGG | + | chr3_3:52243699-52243718 | None:intergenic | 40.0% |
| TAAGATCACTCACTCTATGC+AGG | + | chr3_3:52243714-52243733 | None:intergenic | 40.0% | |
| ! | AAGAGATAAGTAGGGGTACG+AGG | + | chr3_3:52239502-52239521 | None:intergenic | 45.0% |
| CACAGCACTTCTTCTCTACA+AGG | - | chr3_3:52239555-52239574 | Msa0457440:three_prime_UTR | 45.0% | |
| AGGGAAATTGAGAAGTGGGT+TGG | + | chr3_3:52239589-52239608 | None:intergenic | 45.0% | |
| TGACATTGACACACCTACAG+AGG | - | chr3_3:52239674-52239693 | Msa0457440:three_prime_UTR | 45.0% | |
| TGAAAGCTCCTAGCACAAAC+TGG | + | chr3_3:52239758-52239777 | None:intergenic | 45.0% | |
| ACAACCTAGAACCAACACCA+TGG | - | chr3_3:52239881-52239900 | Msa0457440:CDS | 45.0% | |
| GGAAAAACATGCCATGGTGT+TGG | + | chr3_3:52239895-52239914 | None:intergenic | 45.0% | |
| !! | CTGTGGTTTTGCATCTTTGG+CGG | + | chr3_3:52240031-52240050 | None:intergenic | 45.0% |
| GAATTGTCCGGATTTCTTCC+GGG | - | chr3_3:52240050-52240069 | Msa0457440:intron | 45.0% | |
| TGTTGGAGGGAAGTTGTTTG+TGG | - | chr3_3:52240167-52240186 | Msa0457440:intron | 45.0% | |
| GAGGGAAGTTGTTTGTGGAT+TGG | - | chr3_3:52240172-52240191 | Msa0457440:intron | 45.0% | |
| !!! | CAGCTTTTGAGAAGGTATCC+TGG | - | chr3_3:52240246-52240265 | Msa0457440:intron | 45.0% |
| !! | TTTGAGAAGGTATCCTGGGT+TGG | - | chr3_3:52240251-52240270 | Msa0457440:intron | 45.0% |
| CAGAAGGACCAATCAGGAAA+AGG | + | chr3_3:52240396-52240415 | None:intergenic | 45.0% | |
| !! | CTTTTCCTGATTGGTCCTTC+TGG | - | chr3_3:52240394-52240413 | Msa0457440:intron | 45.0% |
| ! | TTTCCTGATTGGTCCTTCTG+GGG | - | chr3_3:52240396-52240415 | Msa0457440:intron | 45.0% |
| ! | ATGGAGCACTAGCATAGACA+CGG | - | chr3_3:52240565-52240584 | Msa0457440:intron | 45.0% |
| AACTGGATGTAACCACGTGT+TGG | - | chr3_3:52240641-52240660 | Msa0457440:intron | 45.0% | |
| TCAGATTGAACACCAACACG+TGG | + | chr3_3:52240656-52240675 | None:intergenic | 45.0% | |
| ! | ATAAGAATCCGCTAGCCTAC+TGG | - | chr3_3:52241127-52241146 | Msa0457440:CDS | 45.0% |
| TTTCCTTTCCAGTAGGCTAG+CGG | + | chr3_3:52241138-52241157 | None:intergenic | 45.0% | |
| !! | ATGCGTCAGGTTGAATGCAA+TGG | - | chr3_3:52241231-52241250 | Msa0457440:intron | 45.0% |
| !! | CTTCTCTCATCACCGCTTTT+GGG | + | chr3_3:52241660-52241679 | None:intergenic | 45.0% |
| ! | ACTTCTCTCATCACCGCTTT+TGG | + | chr3_3:52241661-52241680 | None:intergenic | 45.0% |
| CACCAAGACGATTCTACAAC+AGG | + | chr3_3:52241845-52241864 | None:intergenic | 45.0% | |
| CTGTTGTAGAATCGTCTTGG+TGG | - | chr3_3:52241843-52241862 | Msa0457440:intron | 45.0% | |
| !! | GAGAATTGGAGTTGGTGAAG+AGG | + | chr3_3:52241939-52241958 | None:intergenic | 45.0% |
| CCAGATGAGAGAATTGGAGT+TGG | + | chr3_3:52241947-52241966 | None:intergenic | 45.0% | |
| CCAACTCCAATTCTCTCATC+TGG | - | chr3_3:52241944-52241963 | Msa0457440:intron | 45.0% | |
| GGCGTAGATCTTATATCTGG+TGG | + | chr3_3:52242241-52242260 | None:intergenic | 45.0% | |
| ! | TTTGTAGTGGAACAAGGCCA+CGG | + | chr3_3:52242356-52242375 | None:intergenic | 45.0% |
| ! | CAAGCACCCAAAAGAGGTAT+TGG | - | chr3_3:52242440-52242459 | Msa0457440:intron | 45.0% |
| TTTACCTTCAACTGCCTTGG+AGG | - | chr3_3:52243587-52243606 | Msa0457440:CDS | 45.0% | |
| GGGAGACAGTTGATCTACTA+AGG | + | chr3_3:52243662-52243681 | None:intergenic | 45.0% | |
| ! | CTATGCAGGTTTGAGAGTAC+AGG | + | chr3_3:52243700-52243719 | None:intergenic | 45.0% |
| GTCGGATACCAGTTTGTGCT+AGG | - | chr3_3:52239747-52239766 | Msa0457440:CDS | 50.0% | |
| GATGACGTAGCTAGCAGAAC+CGG | - | chr3_3:52239844-52239863 | Msa0457440:CDS | 50.0% | |
| GTTGTGACCAACCACTGTTC+CGG | + | chr3_3:52239866-52239885 | None:intergenic | 50.0% | |
| !! | CATGCCATGGTGTTGGTTCT+AGG | + | chr3_3:52239888-52239907 | None:intergenic | 50.0% |
| CTGTCGAGTCTCTTCGTCAA+AGG | + | chr3_3:52239926-52239945 | None:intergenic | 50.0% | |
| CAGTGCTCTTACCTCACATG+TGG | - | chr3_3:52239967-52239986 | Msa0457440:CDS | 50.0% | |
| AGTCTGCAGAACCACATGTG+AGG | + | chr3_3:52239981-52240000 | None:intergenic | 50.0% | |
| ! | ACATGTGGTTCTGCAGACTC+TGG | - | chr3_3:52239982-52240001 | Msa0457440:intron | 50.0% |
| GCATCTTTGGCGGCATAACT+AGG | + | chr3_3:52240021-52240040 | None:intergenic | 50.0% | |
| GAGATCTTACCATCCCCAGA+AGG | + | chr3_3:52240412-52240431 | None:intergenic | 50.0% | |
| TCTGGGAACTCTTCTTGCCA+AGG | + | chr3_3:52241072-52241091 | None:intergenic | 50.0% | |
| ! | AATCCGCTAGCCTACTGGAA+AGG | - | chr3_3:52241132-52241151 | Msa0457440:CDS | 50.0% |
| CGAAGAGGAGAAGCAACATC+TGG | + | chr3_3:52241162-52241181 | None:intergenic | 50.0% | |
| GGGAGCAGAAATTATGCGTC+AGG | - | chr3_3:52241218-52241237 | Msa0457440:intron | 50.0% | |
| AGCTGCTAGAAGTGGCTTTC+AGG | - | chr3_3:52241362-52241381 | Msa0457440:intron | 50.0% | |
| GACATCAAATGCACGTCCAC+AGG | + | chr3_3:52241786-52241805 | None:intergenic | 50.0% | |
| ! | GTTGGTGAAGAGGGAATGAG+AGG | + | chr3_3:52241929-52241948 | None:intergenic | 50.0% |
| CACAGACCATGCATACCCTT+CGG | + | chr3_3:52242262-52242281 | None:intergenic | 50.0% | |
| ! | TTGTAGTGGAACAAGGCCAC+GGG | + | chr3_3:52242355-52242374 | None:intergenic | 50.0% |
| GGGAAACAAGCACCCAAAAG+AGG | - | chr3_3:52242434-52242453 | Msa0457440:intron | 50.0% | |
| AGGGAGACGATAGAACATCG+AGG | - | chr3_3:52242651-52242670 | Msa0457440:intron | 50.0% | |
| TGTTATACAGGCTGTGGCGT+TGG | - | chr3_3:52243458-52243477 | Msa0457440:CDS | 50.0% | |
| GTTATACAGGCTGTGGCGTT+GGG | - | chr3_3:52243459-52243478 | Msa0457440:CDS | 50.0% | |
| TTATACAGGCTGTGGCGTTG+GGG | - | chr3_3:52243460-52243479 | Msa0457440:CDS | 50.0% | |
| CAAACCTCCAAGGCAGTTGA+AGG | + | chr3_3:52243594-52243613 | None:intergenic | 50.0% | |
| GCTTTGCTGATGAGAAGCAG+AGG | - | chr3_3:52243631-52243650 | Msa0457440:intron | 50.0% | |
| TACAGGGAGGGGTTTGTGAA+GGG | + | chr3_3:52243683-52243702 | None:intergenic | 50.0% | |
| ! | AGGTTTGAGAGTACAGGGAG+GGG | + | chr3_3:52243694-52243713 | None:intergenic | 50.0% |
| ! | CAGGTTTGAGAGTACAGGGA+GGG | + | chr3_3:52243695-52243714 | None:intergenic | 50.0% |
| AGCTAGCAGAACCGGAACAG+TGG | - | chr3_3:52239852-52239871 | Msa0457440:CDS | 55.0% | |
| AGCAGAACCGGAACAGTGGT+TGG | - | chr3_3:52239856-52239875 | Msa0457440:CDS | 55.0% | |
| ! | TGTGGTTCTGCAGACTCTGG+CGG | - | chr3_3:52239985-52240004 | Msa0457440:intron | 55.0% |
| TCCATGGCTCCAGATCCTTC+CGG | + | chr3_3:52240080-52240099 | None:intergenic | 55.0% | |
| !! | TCCTGGGTTGGTACCTGATG+TGG | - | chr3_3:52240263-52240282 | Msa0457440:intron | 55.0% |
| TCCACATCAGGTACCAACCC+AGG | + | chr3_3:52240267-52240286 | None:intergenic | 55.0% | |
| CATCCCCAGAAGGACCAATC+AGG | + | chr3_3:52240402-52240421 | None:intergenic | 55.0% | |
| ! | CTGATTGGTCCTTCTGGGGA+TGG | - | chr3_3:52240400-52240419 | Msa0457440:intron | 55.0% |
| TGGGATGCAGCTGCTAGAAG+TGG | - | chr3_3:52241354-52241373 | Msa0457440:intron | 55.0% | |
| ! | TCTACGCCGAAGGGTATGCA+TGG | - | chr3_3:52242253-52242272 | Msa0457440:CDS | 55.0% |
| AACTGCCTTGGAGGTTTGCG+AGG | - | chr3_3:52243596-52243615 | Msa0457440:CDS | 55.0% | |
| GGATTCCTCGCAAACCTCCA+AGG | + | chr3_3:52243604-52243623 | None:intergenic | 55.0% | |
| ACAGGGAGGGGTTTGTGAAG+GGG | + | chr3_3:52243682-52243701 | None:intergenic | 55.0% | |
| GTACAGGGAGGGGTTTGTGA+AGG | + | chr3_3:52243684-52243703 | None:intergenic | 55.0% | |
| ! | GCAGGTTTGAGAGTACAGGG+AGG | + | chr3_3:52243696-52243715 | None:intergenic | 55.0% |
| GCAGACTCTGGCGGCAAAAC+AGG | - | chr3_3:52239994-52240013 | Msa0457440:intron | 60.0% | |
| CGGATCGCCCGGAAGAAATC+CGG | + | chr3_3:52240060-52240079 | None:intergenic | 60.0% | |
| CGGATTTCTTCCGGGCGATC+CGG | - | chr3_3:52240058-52240077 | Msa0457440:intron | 60.0% | |
| TTTCTTCCGGGCGATCCGGA+AGG | - | chr3_3:52240062-52240081 | Msa0457440:intron | 60.0% | |
| ! | TCCGGAAGGATCTGGAGCCA+TGG | - | chr3_3:52240076-52240095 | Msa0457440:intron | 60.0% |
| ! | GCTGTGGCGTTGGGGAAAAG+AGG | - | chr3_3:52243468-52243487 | Msa0457440:CDS | 60.0% |
| CCAGATCCTTCCGGATCGCC+CGG | + | chr3_3:52240071-52240090 | None:intergenic | 65.0% | |
| CCGGGCGATCCGGAAGGATC+TGG | - | chr3_3:52240068-52240087 | Msa0457440:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 52239475 | 52243987 | 52239475 | ID=Msa0457440;Name=Msa0457440 |
| chr3_3 | mRNA | 52239475 | 52243987 | 52239475 | ID=Msa0457440-mRNA-1;Parent=Msa0457440;Name=Msa0457440-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0.8|0.83|1|0.8|0.83|6|268|450 |
| chr3_3 | exon | 52239475 | 52239994 | 52239475 | ID=Msa0457440-mRNA-1:exon:10052;Parent=Msa0457440-mRNA-1 |
| chr3_3 | exon | 52241007 | 52241217 | 52241007 | ID=Msa0457440-mRNA-1:exon:10051;Parent=Msa0457440-mRNA-1 |
| chr3_3 | exon | 52242047 | 52242111 | 52242047 | ID=Msa0457440-mRNA-1:exon:10050;Parent=Msa0457440-mRNA-1 |
| chr3_3 | exon | 52242223 | 52242412 | 52242223 | ID=Msa0457440-mRNA-1:exon:10049;Parent=Msa0457440-mRNA-1 |
| chr3_3 | exon | 52243041 | 52243621 | 52243041 | ID=Msa0457440-mRNA-1:exon:10048;Parent=Msa0457440-mRNA-1 |
| chr3_3 | exon | 52243934 | 52243987 | 52243934 | ID=Msa0457440-mRNA-1:exon:10047;Parent=Msa0457440-mRNA-1 |
| chr3_3 | CDS | 52243934 | 52243987 | 52243934 | ID=Msa0457440-mRNA-1:cds;Parent=Msa0457440-mRNA-1 |
| chr3_3 | CDS | 52243041 | 52243621 | 52243041 | ID=Msa0457440-mRNA-1:cds;Parent=Msa0457440-mRNA-1 |
| chr3_3 | CDS | 52242223 | 52242412 | 52242223 | ID=Msa0457440-mRNA-1:cds;Parent=Msa0457440-mRNA-1 |
| chr3_3 | CDS | 52242047 | 52242111 | 52242047 | ID=Msa0457440-mRNA-1:cds;Parent=Msa0457440-mRNA-1 |
| chr3_3 | CDS | 52241007 | 52241217 | 52241007 | ID=Msa0457440-mRNA-1:cds;Parent=Msa0457440-mRNA-1 |
| chr3_3 | CDS | 52239743 | 52239994 | 52239743 | ID=Msa0457440-mRNA-1:cds;Parent=Msa0457440-mRNA-1 |
| chr3_3 | three_prime_UTR | 52239475 | 52239742 | 52239475 | ID=Msa0457440-mRNA-1:three_prime_utr;Parent=Msa0457440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
