Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430720 | XP_013460247.1 | 98.498 | 466 | 7 | 0 | 1 | 466 | 1 | 466 | 0.0 | 957 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430720 | sp|B0X1Q4|RUMI_CULQU | 23.446 | 354 | 239 | 12 | 97 | 431 | 62 | 402 | 4.46e-22 | 101 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430720 | A0A072UYU6 | 98.498 | 466 | 7 | 0 | 1 | 466 | 1 | 466 | 0.0 | 957 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0457440 | Msa1430720 | 0.936872 | 8.658860e-98 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430720 | MtrunA17_Chr3g0104841 | 98.498 | 466 | 7 | 0 | 1 | 466 | 1 | 466 | 0.0 | 957 |
| Msa1430720 | MtrunA17_Chr8g0349361 | 45.844 | 397 | 202 | 6 | 81 | 465 | 84 | 479 | 2.44e-128 | 382 |
| Msa1430720 | MtrunA17_Chr6g0471441 | 47.283 | 368 | 185 | 5 | 106 | 465 | 106 | 472 | 7.44e-125 | 372 |
| Msa1430720 | MtrunA17_Chr5g0397701 | 48.501 | 367 | 178 | 7 | 106 | 465 | 107 | 469 | 2.77e-122 | 366 |
| Msa1430720 | MtrunA17_Chr8g0349241 | 43.687 | 396 | 209 | 6 | 81 | 463 | 70 | 464 | 8.34e-122 | 364 |
| Msa1430720 | MtrunA17_Chr8g0349371 | 45.000 | 400 | 203 | 8 | 81 | 465 | 65 | 462 | 2.30e-120 | 360 |
| Msa1430720 | MtrunA17_Chr7g0247261 | 45.082 | 366 | 191 | 5 | 106 | 463 | 76 | 439 | 7.28e-118 | 353 |
| Msa1430720 | MtrunA17_Chr7g0247251 | 43.750 | 368 | 196 | 6 | 105 | 463 | 27 | 392 | 1.19e-114 | 342 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1430720 | AT1G07220.1 | 63.557 | 461 | 165 | 1 | 6 | 463 | 12 | 472 | 0.0 | 642 |
| Msa1430720 | AT5G23850.1 | 48.509 | 369 | 181 | 5 | 105 | 465 | 138 | 505 | 4.17e-132 | 392 |
| Msa1430720 | AT3G48980.2 | 47.154 | 369 | 186 | 5 | 105 | 465 | 141 | 508 | 5.00e-127 | 380 |
| Msa1430720 | AT3G48980.1 | 47.154 | 369 | 186 | 5 | 105 | 465 | 135 | 502 | 6.36e-127 | 379 |
| Msa1430720 | AT2G45830.4 | 43.814 | 388 | 205 | 6 | 84 | 463 | 101 | 483 | 1.69e-119 | 360 |
| Msa1430720 | AT2G45830.1 | 43.814 | 388 | 205 | 6 | 84 | 463 | 101 | 483 | 1.69e-119 | 360 |
| Msa1430720 | AT1G63420.1 | 44.495 | 436 | 215 | 10 | 50 | 465 | 117 | 545 | 1.87e-119 | 361 |
| Msa1430720 | AT3G61270.1 | 45.161 | 372 | 196 | 5 | 101 | 465 | 92 | 462 | 4.51e-118 | 355 |
| Msa1430720 | AT2G45840.1 | 43.176 | 403 | 211 | 8 | 76 | 465 | 88 | 485 | 1.13e-111 | 340 |
| Msa1430720 | AT2G45830.3 | 45.029 | 342 | 179 | 5 | 130 | 463 | 2 | 342 | 6.60e-109 | 328 |
| Msa1430720 | AT2G45830.6 | 45.029 | 342 | 179 | 5 | 130 | 463 | 2 | 342 | 6.60e-109 | 328 |
| Msa1430720 | AT2G45830.2 | 45.029 | 342 | 179 | 5 | 130 | 463 | 2 | 342 | 6.60e-109 | 328 |
| Msa1430720 | AT2G45830.5 | 45.029 | 342 | 179 | 5 | 130 | 463 | 2 | 342 | 6.60e-109 | 328 |
| Msa1430720 | AT3G61280.1 | 42.079 | 404 | 215 | 8 | 81 | 466 | 100 | 502 | 3.67e-108 | 331 |
| Msa1430720 | AT3G61270.2 | 44.898 | 343 | 181 | 5 | 130 | 465 | 2 | 343 | 8.01e-107 | 322 |
| Msa1430720 | AT3G61290.1 | 42.276 | 369 | 201 | 5 | 81 | 438 | 18 | 385 | 1.27e-100 | 309 |
| Msa1430720 | AT1G63420.2 | 46.264 | 348 | 167 | 7 | 50 | 384 | 117 | 457 | 1.09e-95 | 297 |
| Msa1430720 | AT3G61280.2 | 40.299 | 268 | 143 | 6 | 81 | 332 | 100 | 366 | 1.87e-64 | 213 |
Find 131 sgRNAs with CRISPR-Local
Find 301 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCACTGTGATTTCATGTTCT+TGG | 0.213856 | tig0026742:-56960 | None:intergenic |
| TGAGCACCTTGTTTAATATC+TGG | 0.236819 | tig0026742:-54260 | None:intergenic |
| GAGTAAACCAATACCTCTTT+TGG | 0.238348 | tig0026742:-55620 | None:intergenic |
| GAGTGATCTTACCTGTATTT+TGG | 0.311097 | tig0026742:+56896 | Msa1430720:three_prime_UTR |
| AGCTGCTAGAAGTGGCTTTC+AGG | 0.316955 | tig0026742:+54535 | Msa1430720:CDS |
| AAAGATTTCTAAAGGGCATT+TGG | 0.333379 | tig0026742:+53280 | Msa1430720:CDS |
| TCTACATTGCGCTTTATAGA+TGG | 0.333559 | tig0026742:-55581 | None:intergenic |
| CATGCCATGGTGTTGGTTCT+AGG | 0.338670 | tig0026742:-53058 | None:intergenic |
| GTTATACAGGCTGTGGCGTT+GGG | 0.344946 | tig0026742:+56632 | Msa1430720:intron |
| GTAAATTTATAGTGCCTTGT+AGG | 0.359268 | tig0026742:+57044 | Msa1430720:three_prime_UTR |
| GCAGACTCTGGCGGCAAAAC+AGG | 0.360476 | tig0026742:+53167 | Msa1430720:CDS |
| AGTCTCTTCGTCAAAGGATT+TGG | 0.360533 | tig0026742:-53090 | None:intergenic |
| TTCTTTACCTTCAACTGCCT+TGG | 0.360860 | tig0026742:+56757 | Msa1430720:CDS |
| GAAAAGAGGACAAGACTATA+TGG | 0.371649 | tig0026742:+56655 | Msa1430720:CDS |
| GTAGGGCTATGTTTACTGTT+TGG | 0.379991 | tig0026742:+53387 | Msa1430720:CDS |
| AACATGAAATCACAGTGATT+TGG | 0.382466 | tig0026742:+56965 | Msa1430720:three_prime_UTR |
| AGAATTGTCCGGATTTCTTC+CGG | 0.387434 | tig0026742:+53222 | Msa1430720:CDS |
| CCGGGCGATCCGGAAGGATC+TGG | 0.396077 | tig0026742:+53241 | Msa1430720:CDS |
| ATTATGCTTGTGTTCAAAGT+AGG | 0.401074 | tig0026742:+53369 | Msa1430720:CDS |
| GAATTGTCCGGATTTCTTCC+GGG | 0.403730 | tig0026742:+53223 | Msa1430720:CDS |
| CTGATTGGTCCTTCTGGGGA+TGG | 0.409600 | tig0026742:+53573 | Msa1430720:CDS |
| GTTGTGACCAACCACTGTTC+CGG | 0.411905 | tig0026742:-53036 | None:intergenic |
| TTTACCTTCAACTGCCTTGG+AGG | 0.417789 | tig0026742:+56760 | Msa1430720:CDS |
| ATAAGAATCCGCTAGCCTAC+TGG | 0.419791 | tig0026742:+54300 | Msa1430720:CDS |
| TTTAAGAGAGCATACATTGC+GGG | 0.419841 | tig0026742:+57109 | Msa1430720:three_prime_UTR |
| TCCATGGCTCCAGATCCTTC+CGG | 0.423208 | tig0026742:-53250 | None:intergenic |
| GCATCTTTGGCGGCATAACT+AGG | 0.433738 | tig0026742:-53191 | None:intergenic |
| AAGGTGCTCAAGTTGTTAGT+TGG | 0.433746 | tig0026742:+54273 | Msa1430720:CDS |
| TACAGGGAGGGGTTTGTGAA+GGG | 0.434316 | tig0026742:-56853 | None:intergenic |
| CTATAAAGCGCAATGTAGAC+TGG | 0.437255 | tig0026742:+55585 | Msa1430720:CDS |
| TGTTGGAGGGAAGTTGTTTG+TGG | 0.437527 | tig0026742:+53340 | Msa1430720:CDS |
| GTTCTGTGGCACTAATTATA+CGG | 0.447164 | tig0026742:+55480 | Msa1430720:CDS |
| AATATCAAAGTGTTCCTTTG+TGG | 0.447861 | tig0026742:-53543 | None:intergenic |
| GCATTTAGAGTGGTGATTGT+TGG | 0.455309 | tig0026742:+53323 | Msa1430720:CDS |
| CATAGATCTAGAGGATCAAC+TGG | 0.457472 | tig0026742:-55557 | None:intergenic |
| GGATTTGATGTTTGATTGCA+TGG | 0.460183 | tig0026742:+53457 | Msa1430720:CDS |
| TGTTATACAGGCTGTGGCGT+TGG | 0.461771 | tig0026742:+56631 | Msa1430720:intron |
| GAGGGAAGTTGTTTGTGGAT+TGG | 0.463890 | tig0026742:+53345 | Msa1430720:CDS |
| CGAAGAGGAGAAGCAACATC+TGG | 0.468276 | tig0026742:-54332 | None:intergenic |
| CGGATTTCTTCCGGGCGATC+CGG | 0.468381 | tig0026742:+53231 | Msa1430720:CDS |
| AAGAAAACAAAGATTTCTAA+AGG | 0.469356 | tig0026742:+53272 | Msa1430720:CDS |
| GTACAGGGAGGGGTTTGTGA+AGG | 0.471260 | tig0026742:-56854 | None:intergenic |
| CAAGGTCGTATGTTTATCTC+TGG | 0.471296 | tig0026742:-54224 | None:intergenic |
| ACACAAGGTAAGAGATAAGT+AGG | 0.472695 | tig0026742:-52681 | None:intergenic |
| CAAACCTCCAAGGCAGTTGA+AGG | 0.474510 | tig0026742:-56764 | None:intergenic |
| CGGATCGCCCGGAAGAAATC+CGG | 0.474534 | tig0026742:-53230 | None:intergenic |
| CACAGCACTTCTTCTCTACA+AGG | 0.475954 | tig0026742:+52728 | Msa1430720:CDS |
| CATCCCCAGAAGGACCAATC+AGG | 0.479414 | tig0026742:-53572 | None:intergenic |
| CGTAAAAGATTGAGAAGAAG+TGG | 0.483318 | tig0026742:-52543 | None:intergenic |
| GGGAGCAGAAATTATGCGTC+AGG | 0.483405 | tig0026742:+54391 | Msa1430720:CDS |
| GAGCACCTTGTTTAATATCT+GGG | 0.487238 | tig0026742:-54259 | None:intergenic |
| AGTCATGATTTAGAAACATA+AGG | 0.492745 | tig0026742:-52517 | None:intergenic |
| ACAGGGAGGGGTTTGTGAAG+GGG | 0.493392 | tig0026742:-56852 | None:intergenic |
| CCAGATCCTTCCGGATCGCC+CGG | 0.493659 | tig0026742:-53241 | None:intergenic |
| CTATGCAGGTTTGAGAGTAC+AGG | 0.493800 | tig0026742:-56870 | None:intergenic |
| CAGAAGGACCAATCAGGAAA+AGG | 0.495651 | tig0026742:-53566 | None:intergenic |
| AGAAAACAAAGATTTCTAAA+GGG | 0.497043 | tig0026742:+53273 | Msa1430720:CDS |
| GATGACGTAGCTAGCAGAAC+CGG | 0.498905 | tig0026742:+53017 | Msa1430720:CDS |
| GGGAGACAGTTGATCTACTA+AGG | 0.505359 | tig0026742:-56832 | None:intergenic |
| TTGCAATGATTCTATGAAGT+GGG | 0.505910 | tig0026742:+54370 | Msa1430720:CDS |
| TTGAAATATATTCTCTCATG+TGG | 0.512101 | tig0026742:+55458 | Msa1430720:CDS |
| CTGTCGAGTCTCTTCGTCAA+AGG | 0.512576 | tig0026742:-53096 | None:intergenic |
| ACATGTGGTTCTGCAGACTC+TGG | 0.513486 | tig0026742:+53155 | Msa1430720:CDS |
| AACTGCCTTGGAGGTTTGCG+AGG | 0.514594 | tig0026742:+56769 | Msa1430720:CDS |
| CACAGACCATGCATACCCTT+CGG | 0.523281 | tig0026742:-55432 | None:intergenic |
| TTATGCTTGTGTTCAAAGTA+GGG | 0.528660 | tig0026742:+53370 | Msa1430720:CDS |
| TCAAACATCAAATCCACATC+AGG | 0.529307 | tig0026742:-53449 | None:intergenic |
| TGCAAAACCACAGAATTGTC+CGG | 0.531065 | tig0026742:+53211 | Msa1430720:CDS |
| GATTTCTAAAGGGCATTTGG+TGG | 0.532876 | tig0026742:+53283 | Msa1430720:CDS |
| TTTCCTGATTGGTCCTTCTG+GGG | 0.540209 | tig0026742:+53569 | Msa1430720:CDS |
| TAAGATCACTCACTCTATGC+AGG | 0.541245 | tig0026742:-56884 | None:intergenic |
| GCTGTGGCGTTGGGGAAAAG+AGG | 0.541635 | tig0026742:+56641 | Msa1430720:CDS |
| TTTGAGAAGGTATCCTGGGT+TGG | 0.542124 | tig0026742:+53424 | Msa1430720:CDS |
| TCCTGGGTTGGTACCTGATG+TGG | 0.543537 | tig0026742:+53436 | Msa1430720:CDS |
| TTACATGTTCCACCTTATCT+CGG | 0.545308 | tig0026742:+56706 | Msa1430720:CDS |
| AAGGCAGTTGAAGGTAAAGA+AGG | 0.552597 | tig0026742:-56755 | None:intergenic |
| CAGGTTTGAGAGTACAGGGA+GGG | 0.554303 | tig0026742:-56865 | None:intergenic |
| TATTCTCTCATGTGGTTCTG+TGG | 0.555138 | tig0026742:+55466 | Msa1430720:CDS |
| TTGAGTATTCCGAGATAAGG+TGG | 0.555834 | tig0026742:-56715 | None:intergenic |
| AAGAGATAAGTAGGGGTACG+AGG | 0.558927 | tig0026742:-52672 | None:intergenic |
| TCTTCGTCAAAGGATTTGGT+AGG | 0.563348 | tig0026742:-53086 | None:intergenic |
| GGGAAACAAGCACCCAAAAG+AGG | 0.565209 | tig0026742:+55607 | Msa1430720:CDS |
| AGGACACTCATTTCACATGA+TGG | 0.569195 | tig0026742:-52497 | None:intergenic |
| TTTGTAGTGGAACAAGGCCA+CGG | 0.569197 | tig0026742:-55526 | None:intergenic |
| TTTAGAGTGGTGATTGTTGG+AGG | 0.569528 | tig0026742:+53326 | Msa1430720:CDS |
| TCCGGAAGGATCTGGAGCCA+TGG | 0.571012 | tig0026742:+53249 | Msa1430720:CDS |
| CACAAGGTAAGAGATAAGTA+GGG | 0.575100 | tig0026742:-52680 | None:intergenic |
| TTTCTTCCGGGCGATCCGGA+AGG | 0.582525 | tig0026742:+53235 | Msa1430720:CDS |
| TATAAAGCGCAATGTAGACT+GGG | 0.584629 | tig0026742:+55586 | Msa1430720:CDS |
| CTTGCAATGATTCTATGAAG+TGG | 0.586888 | tig0026742:+54369 | Msa1430720:CDS |
| ATAGATGGACATAGATCTAG+AGG | 0.588886 | tig0026742:-55566 | None:intergenic |
| AGCAGAACCGGAACAGTGGT+TGG | 0.590052 | tig0026742:+53029 | Msa1430720:CDS |
| TTGTAGTGGAACAAGGCCAC+GGG | 0.590446 | tig0026742:-55525 | None:intergenic |
| TTAGAGTGGTGATTGTTGGA+GGG | 0.593036 | tig0026742:+53327 | Msa1430720:CDS |
| TTTCCTTTCCAGTAGGCTAG+CGG | 0.593603 | tig0026742:-54308 | None:intergenic |
| CTCATCAGCAAAGCAAAGAA+CGG | 0.595528 | tig0026742:-56795 | None:intergenic |
| ATCTGGATTTCCTTTCCAGT+AGG | 0.596042 | tig0026742:-54315 | None:intergenic |
| TCTGGGAACTCTTCTTGCCA+AGG | 0.605793 | tig0026742:-54242 | None:intergenic |
| GTGGTACAATAACGAAACAA+TGG | 0.607488 | tig0026742:-53524 | None:intergenic |
| GTAAGTAATTCAGTACGAAG+AGG | 0.609755 | tig0026742:-54347 | None:intergenic |
| TGGGATGCAGCTGCTAGAAG+TGG | 0.610423 | tig0026742:+54527 | Msa1430720:CDS |
| GATATAAGATCTACGCCGAA+GGG | 0.612550 | tig0026742:+55417 | Msa1430720:intron |
| GGATTCCTCGCAAACCTCCA+AGG | 0.616375 | tig0026742:-56774 | None:intergenic |
| GCTTTGCTGATGAGAAGCAG+AGG | 0.616426 | tig0026742:+56804 | Msa1430720:CDS |
| CAGAGATAAACATACGACCT+TGG | 0.617677 | tig0026742:+54225 | Msa1430720:CDS |
| AAGAAATCCGGACAATTCTG+TGG | 0.618468 | tig0026742:-53218 | None:intergenic |
| CAATAACGAAACAATGGCAA+AGG | 0.620576 | tig0026742:-53518 | None:intergenic |
| TTATACAGGCTGTGGCGTTG+GGG | 0.620858 | tig0026742:+56633 | Msa1430720:intron |
| AATCCGCTAGCCTACTGGAA+AGG | 0.622557 | tig0026742:+54305 | Msa1430720:CDS |
| TTTCGAAACAGTGTAATCAC+AGG | 0.628103 | tig0026742:+54567 | Msa1430720:CDS |
| GTTTCGTTATTGTACCACAA+AGG | 0.629278 | tig0026742:+53529 | Msa1430720:CDS |
| AGGTTTGAGAGTACAGGGAG+GGG | 0.631423 | tig0026742:-56864 | None:intergenic |
| TCCACATCAGGTACCAACCC+AGG | 0.632399 | tig0026742:-53437 | None:intergenic |
| AGATATAAGATCTACGCCGA+AGG | 0.635102 | tig0026742:+55416 | Msa1430720:intron |
| TCTACGCCGAAGGGTATGCA+TGG | 0.646755 | tig0026742:+55426 | Msa1430720:CDS |
| AAAGTATGCTGCATTTAGAG+TGG | 0.648495 | tig0026742:+53313 | Msa1430720:CDS |
| TGCAATGATTCTATGAAGTG+GGG | 0.649047 | tig0026742:+54371 | Msa1430720:CDS |
| TATGCAGGTTTGAGAGTACA+GGG | 0.650267 | tig0026742:-56869 | None:intergenic |
| GAGATCTTACCATCCCCAGA+AGG | 0.656796 | tig0026742:-53582 | None:intergenic |
| ACACTCATTTCACATGATGG+TGG | 0.657149 | tig0026742:-52494 | None:intergenic |
| AAAGAAAGAGCAATGACACA+AGG | 0.668748 | tig0026742:-52696 | None:intergenic |
| TGTGGTTCTGCAGACTCTGG+CGG | 0.669254 | tig0026742:+53158 | Msa1430720:CDS |
| CAGTGCTCTTACCTCACATG+TGG | 0.669414 | tig0026742:+53140 | Msa1430720:CDS |
| AGCTAGCAGAACCGGAACAG+TGG | 0.672275 | tig0026742:+53025 | Msa1430720:CDS |
| GAGTTCCCAGATATTAAACA+AGG | 0.680944 | tig0026742:+54254 | Msa1430720:CDS |
| AGTCTGCAGAACCACATGTG+AGG | 0.692795 | tig0026742:-53151 | None:intergenic |
| ATTTAAGAGAGCATACATTG+CGG | 0.694395 | tig0026742:+57108 | Msa1430720:three_prime_UTR |
| ATAAAGCGCAATGTAGACTG+GGG | 0.695085 | tig0026742:+55587 | Msa1430720:CDS |
| ACAAGGTAAGAGATAAGTAG+GGG | 0.710845 | tig0026742:-52679 | None:intergenic |
| ACAACCTAGAACCAACACCA+TGG | 0.713734 | tig0026742:+53054 | Msa1430720:CDS |
| GCAGGTTTGAGAGTACAGGG+AGG | 0.761535 | tig0026742:-56866 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGATATATTAATATCAATTA+TGG | + | tig0026742:53719-53738 | Msa1430720:intron | 10.0% |
| !!! | AAAAAATTGTATTTTGAAAA+CGG | - | tig0026742:54787-54806 | None:intergenic | 10.0% |
| !!! | TGATATTTTTTCAATATTTA+AGG | + | tig0026742:55976-55995 | Msa1430720:intron | 10.0% |
| !!! | TGTATTATTTCTATTATAAA+AGG | - | tig0026742:56227-56246 | None:intergenic | 10.0% |
| !! | TTATAATAGAAATAATACAT+AGG | + | tig0026742:56228-56247 | Msa1430720:intron | 10.0% |
| !!! | TGATAATAATTTTAGAAAAC+TGG | + | tig0026742:53797-53816 | Msa1430720:intron | 15.0% |
| !! | TAAACAGCAATAAATATTAA+TGG | - | tig0026742:54075-54094 | None:intergenic | 15.0% |
| !!! | AATTGAATTACTGATTTTAA+AGG | + | tig0026742:54117-54136 | Msa1430720:intron | 15.0% |
| !!! | AAAAATTGTATTTTGAAAAC+GGG | - | tig0026742:54786-54805 | None:intergenic | 15.0% |
| !! | AAAATTAACAAATTCTTGAA+GGG | + | tig0026742:55805-55824 | Msa1430720:intron | 15.0% |
| !! | TAATTTCTATTATACCATTA+GGG | - | tig0026742:56313-56332 | None:intergenic | 15.0% |
| !! | ATAATTTCTATTATACCATT+AGG | - | tig0026742:56314-56333 | None:intergenic | 15.0% |
| !! | TAATTTCTATTATACCATTA+GGG | - | tig0026742:56313-56332 | None:intergenic | 15.0% |
| !! | ACATAATTAATCAAATTCAT+TGG | - | tig0026742:56597-56616 | None:intergenic | 15.0% |
| !!! | TTGTTTTTATATTGTTATAC+AGG | + | tig0026742:56619-56638 | Msa1430720:intron | 15.0% |
| !!! | TAATTTTTCTTCTTCTACAA+TGG | + | tig0026742:52629-52648 | Msa1430720:exon | 20.0% |
| !!! | AATTTTTCTTCTTCTACAAT+GGG | + | tig0026742:52630-52649 | Msa1430720:exon | 20.0% |
| !!! | TCATAGTTTTAACGATATAA+GGG | - | tig0026742:52781-52800 | None:intergenic | 20.0% |
| !!! | TTCATAGTTTTAACGATATA+AGG | - | tig0026742:52782-52801 | None:intergenic | 20.0% |
| !!! | TTTGTGTAATTTTATCAAAC+AGG | + | tig0026742:52992-53011 | Msa1430720:intron | 20.0% |
| !! | AAGAAAACAAAGATTTCTAA+AGG | + | tig0026742:53272-53291 | Msa1430720:CDS | 20.0% |
| !! | AGAAAACAAAGATTTCTAAA+GGG | + | tig0026742:53273-53292 | Msa1430720:CDS | 20.0% |
| !! | AGAATGAAATATTGATGAAA+AGG | - | tig0026742:53632-53651 | None:intergenic | 20.0% |
| !!! | AATACTAAGTGTTATTTGAT+TGG | + | tig0026742:53666-53685 | Msa1430720:intron | 20.0% |
| !! | AAGTAAATAATCTCAATTGT+AGG | + | tig0026742:53983-54002 | Msa1430720:intron | 20.0% |
| !!! | ATTTTAAAGGAATCAAATGA+GGG | + | tig0026742:54130-54149 | Msa1430720:intron | 20.0% |
| !!! | TCAATAGCAGATTTAAAATA+TGG | + | tig0026742:55171-55190 | Msa1430720:intron | 20.0% |
| !! | TAAATTGCTTAATTGCAATT+TGG | - | tig0026742:55232-55251 | None:intergenic | 20.0% |
| !! | CAAAATTAACAAATTCTTGA+AGG | + | tig0026742:55804-55823 | Msa1430720:intron | 20.0% |
| !!! | ACAAAAACATTCATTTTGAT+TGG | - | tig0026742:55930-55949 | None:intergenic | 20.0% |
| !! | TCAATATTTAAGGAAAAACA+TGG | + | tig0026742:55986-56005 | Msa1430720:intron | 20.0% |
| !! | CTAATTTCTATTATACCATT+AGG | - | tig0026742:56406-56425 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTACTACTAACAA+TGG | - | tig0026742:57009-57028 | None:intergenic | 20.0% |
| !! | TTAGTAGTAAAAGAAAAAGT+TGG | + | tig0026742:57012-57031 | Msa1430720:three_prime_UTR | 20.0% |
| ! | AGTCATGATTTAGAAACATA+AGG | - | tig0026742:52520-52539 | None:intergenic | 25.0% |
| !! | TGATAGACAAGATCAATTTT+TGG | + | tig0026742:53880-53899 | Msa1430720:intron | 25.0% |
| !!! | GATTTTAAAGGAATCAAATG+AGG | + | tig0026742:54129-54148 | Msa1430720:intron | 25.0% |
| !!! | TGTTGTTTGTTTTGATGATT+TGG | + | tig0026742:54155-54174 | Msa1430720:intron | 25.0% |
| ! | ATTAATGTCCAATTTGTGAA+AGG | - | tig0026742:54430-54449 | None:intergenic | 25.0% |
| !!! | TATATTTTGATATGCATTGC+AGG | + | tig0026742:54502-54521 | Msa1430720:intron | 25.0% |
| ! | TTATAATCCATCTTCTTAGT+TGG | - | tig0026742:54645-54664 | None:intergenic | 25.0% |
| ! | TAATGCTCACAAAATATACA+TGG | + | tig0026742:54662-54681 | Msa1430720:intron | 25.0% |
| !! | ATAGCAGATTTAAAATATGG+AGG | + | tig0026742:55174-55193 | Msa1430720:intron | 25.0% |
| !! | TTTAGAAGTTACAGTGATTT+TGG | + | tig0026742:55273-55292 | Msa1430720:intron | 25.0% |
| ! | TTGAAATATATTCTCTCATG+TGG | + | tig0026742:55458-55477 | Msa1430720:CDS | 25.0% |
| ! | GGAAAAACATGGTTATTATT+AGG | + | tig0026742:55997-56016 | Msa1430720:intron | 25.0% |
| !! | TAAGCATAAAAGGTTTGTTT+AGG | + | tig0026742:56064-56083 | Msa1430720:intron | 25.0% |
| !! | AATTGAGTTGTTTATCCAAA+CGG | + | tig0026742:56286-56305 | Msa1430720:intron | 25.0% |
| ! | GTATAATAGAAATTATGTGC+TGG | + | tig0026742:56318-56337 | Msa1430720:intron | 25.0% |
| ! | TGGTATAATAGAAATTAGTG+TGG | + | tig0026742:56408-56427 | Msa1430720:intron | 25.0% |
| ! | TATAATAGAAATTAGTGTGG+TGG | + | tig0026742:56411-56430 | Msa1430720:intron | 25.0% |
| ! | ACTAGCAGTATAAAATTGAT+AGG | - | tig0026742:56509-56528 | None:intergenic | 25.0% |
| ! | CAATAATTGAAGAAAACTTG+AGG | - | tig0026742:56534-56553 | None:intergenic | 25.0% |
| !! | CTTTTAAATGATTACCTACA+AGG | - | tig0026742:57061-57080 | None:intergenic | 25.0% |
| !!! | AAGAAAGAGTGTTTTGAGTT+TGG | - | tig0026742:52600-52619 | None:intergenic | 30.0% |
| TATAAGGGAAATTGAGAAGT+GGG | - | tig0026742:52766-52785 | None:intergenic | 30.0% | |
| ATATAAGGGAAATTGAGAAG+TGG | - | tig0026742:52767-52786 | None:intergenic | 30.0% | |
| ! | GTGTAATTTTATCAAACAGG+TGG | + | tig0026742:52995-53014 | Msa1430720:intron | 30.0% |
| ! | ACTGTATAATTTTGTAGGCT+CGG | - | tig0026742:53124-53143 | None:intergenic | 30.0% |
| !!! | AGAGCACTGTATAATTTTGT+AGG | - | tig0026742:53129-53148 | None:intergenic | 30.0% |
| !!! | GAAATCTTTGTTTTCTTCCA+TGG | - | tig0026742:53269-53288 | None:intergenic | 30.0% |
| !! | AAAGATTTCTAAAGGGCATT+TGG | + | tig0026742:53280-53299 | Msa1430720:CDS | 30.0% |
| ATTATGCTTGTGTTCAAAGT+AGG | + | tig0026742:53369-53388 | Msa1430720:CDS | 30.0% | |
| TTATGCTTGTGTTCAAAGTA+GGG | + | tig0026742:53370-53389 | Msa1430720:CDS | 30.0% | |
| !! | TGTTCTGTTTTGTTAATGCT+AGG | - | tig0026742:53488-53507 | None:intergenic | 30.0% |
| ! | AATATCAAAGTGTTCCTTTG+TGG | - | tig0026742:53546-53565 | None:intergenic | 30.0% |
| ! | TTGATATTCCTTTTCCTGAT+TGG | + | tig0026742:53558-53577 | Msa1430720:CDS | 30.0% |
| !! | ACAAGATCAATTTTTGGACT+AGG | + | tig0026742:53886-53905 | Msa1430720:intron | 30.0% |
| TGATTGTGTTGAACATTTGT+TGG | + | tig0026742:54196-54215 | Msa1430720:intron | 30.0% | |
| TTGCAATGATTCTATGAAGT+GGG | + | tig0026742:54370-54389 | Msa1430720:CDS | 30.0% | |
| TACATCAGACAACTAAAGTT+TGG | - | tig0026742:54484-54503 | None:intergenic | 30.0% | |
| AATTACACCAACTAAGAAGA+TGG | + | tig0026742:54635-54654 | Msa1430720:intron | 30.0% | |
| ! | ACATGGCTTAATTGCAATTT+TGG | + | tig0026742:54722-54741 | Msa1430720:intron | 30.0% |
| !! | ATTGTATTTTGAAAACGGGA+GGG | - | tig0026742:54782-54801 | None:intergenic | 30.0% |
| !! | AATTGTATTTTGAAAACGGG+AGG | - | tig0026742:54783-54802 | None:intergenic | 30.0% |
| ATTCATGATAATCCGTCATT+GGG | - | tig0026742:54912-54931 | None:intergenic | 30.0% | |
| AATTCATGATAATCCGTCAT+TGG | - | tig0026742:54913-54932 | None:intergenic | 30.0% | |
| !! | TATGAAATTCTAGTTTCCTG+TGG | + | tig0026742:54940-54959 | Msa1430720:intron | 30.0% |
| TGTCGTAGAAACAAACTTAT+GGG | + | tig0026742:54984-55003 | Msa1430720:intron | 30.0% | |
| ! | TTTTAAATCTGCTATTGACG+TGG | - | tig0026742:55169-55188 | None:intergenic | 30.0% |
| ! | CACATATTTTCACTCGTTTA+CGG | - | tig0026742:55207-55226 | None:intergenic | 30.0% |
| ! | CAGTGATTTTGGATGTTATT+TGG | + | tig0026742:55284-55303 | Msa1430720:intron | 30.0% |
| GTGAAAAAATCTTCATACTG+CGG | - | tig0026742:55506-55525 | None:intergenic | 30.0% | |
| !! | AAAAGTTTTGTAGTGGAACA+AGG | - | tig0026742:55535-55554 | None:intergenic | 30.0% |
| !! | ACTGGTAAAAAGTTTTGTAG+TGG | - | tig0026742:55542-55561 | None:intergenic | 30.0% |
| ! | AGTAAACCAATACCTCTTTT+GGG | - | tig0026742:55622-55641 | None:intergenic | 30.0% |
| ATGGATCAAAACTAAATGAC+AGG | - | tig0026742:55659-55678 | None:intergenic | 30.0% | |
| !!! | TCATTTAGTTTTGATCCATG+TGG | + | tig0026742:55660-55679 | Msa1430720:intron | 30.0% |
| CACAAAGAATAGAACTATAC+TGG | - | tig0026742:55687-55706 | None:intergenic | 30.0% | |
| ! | AGCAGGTTTTTATAAGACAT+GGG | - | tig0026742:55723-55742 | None:intergenic | 30.0% |
| !!! | TAAATACAAGAGTTTTGAGC+AGG | - | tig0026742:55740-55759 | None:intergenic | 30.0% |
| GGCTTATTCATAAGCATAAA+AGG | + | tig0026742:56054-56073 | Msa1430720:intron | 30.0% | |
| ! | CATAAAAGGTTTGTTTAGGT+TGG | + | tig0026742:56068-56087 | Msa1430720:intron | 30.0% |
| AGCATAAGTGCTTATCATAT+AGG | - | tig0026742:56256-56275 | None:intergenic | 30.0% | |
| AACAAATCAGCTATGTTTCA+TGG | - | tig0026742:56371-56390 | None:intergenic | 30.0% | |
| TAACATGGAGTAATCAAACT+AGG | - | tig0026742:56482-56501 | None:intergenic | 30.0% | |
| AAATTGATAGGTGACTAACA+TGG | - | tig0026742:56497-56516 | None:intergenic | 30.0% | |
| TTATATTGTTATACAGGCTG+TGG | + | tig0026742:56625-56644 | Msa1430720:intron | 30.0% | |
| ! | ATTTTTGTGCACCAAAATAC+AGG | - | tig0026742:56910-56929 | None:intergenic | 30.0% |
| AACATGAAATCACAGTGATT+TGG | + | tig0026742:56965-56984 | Msa1430720:three_prime_UTR | 30.0% | |
| GTAAATTTATAGTGCCTTGT+AGG | + | tig0026742:57044-57063 | Msa1430720:three_prime_UTR | 30.0% | |
| ! | ATTTAAGAGAGCATACATTG+CGG | + | tig0026742:57108-57127 | Msa1430720:three_prime_UTR | 30.0% |
| CGTAAAAGATTGAGAAGAAG+TGG | - | tig0026742:52546-52565 | None:intergenic | 35.0% | |
| ACAAGGTAAGAGATAAGTAG+GGG | - | tig0026742:52682-52701 | None:intergenic | 35.0% | |
| CACAAGGTAAGAGATAAGTA+GGG | - | tig0026742:52683-52702 | None:intergenic | 35.0% | |
| ACACAAGGTAAGAGATAAGT+AGG | - | tig0026742:52684-52703 | None:intergenic | 35.0% | |
| AAAGAAAGAGCAATGACACA+AGG | - | tig0026742:52699-52718 | None:intergenic | 35.0% | |
| TACATGTTTGTGTTTGTGTC+TGG | - | tig0026742:52814-52833 | None:intergenic | 35.0% | |
| GACACAAACACAAACATGTA+TGG | + | tig0026742:52814-52833 | Msa1430720:intron | 35.0% | |
| CTACAGAGGAACAATTTGAA+GGG | + | tig0026742:52861-52880 | Msa1430720:intron | 35.0% | |
| TATATGTATCAGTGTCGTGT+CGG | + | tig0026742:52902-52921 | Msa1430720:intron | 35.0% | |
| !! | ATTCTGTGGTTTTGCATCTT+TGG | - | tig0026742:53207-53226 | None:intergenic | 35.0% |
| AAAGTATGCTGCATTTAGAG+TGG | + | tig0026742:53313-53332 | Msa1430720:CDS | 35.0% | |
| TCAAACATCAAATCCACATC+AGG | - | tig0026742:53452-53471 | None:intergenic | 35.0% | |
| GGATTTGATGTTTGATTGCA+TGG | + | tig0026742:53457-53476 | Msa1430720:CDS | 35.0% | |
| CAATAACGAAACAATGGCAA+AGG | - | tig0026742:53521-53540 | None:intergenic | 35.0% | |
| GTGGTACAATAACGAAACAA+TGG | - | tig0026742:53527-53546 | None:intergenic | 35.0% | |
| GTTTCGTTATTGTACCACAA+AGG | + | tig0026742:53529-53548 | Msa1430720:CDS | 35.0% | |
| GGATGGTAAGATCTCAATTA+GGG | + | tig0026742:53590-53609 | Msa1430720:intron | 35.0% | |
| GAGTTCCCAGATATTAAACA+AGG | + | tig0026742:54254-54273 | Msa1430720:CDS | 35.0% | |
| ! | GAGCACCTTGTTTAATATCT+GGG | - | tig0026742:54262-54281 | None:intergenic | 35.0% |
| ! | TGAGCACCTTGTTTAATATC+TGG | - | tig0026742:54263-54282 | None:intergenic | 35.0% |
| GTAAGTAATTCAGTACGAAG+AGG | - | tig0026742:54350-54369 | None:intergenic | 35.0% | |
| CTTGCAATGATTCTATGAAG+TGG | + | tig0026742:54369-54388 | Msa1430720:CDS | 35.0% | |
| TGCAATGATTCTATGAAGTG+GGG | + | tig0026742:54371-54390 | Msa1430720:CDS | 35.0% | |
| TTTGATATGCATTGCAGGAT+TGG | + | tig0026742:54507-54526 | Msa1430720:intron | 35.0% | |
| TTGATATGCATTGCAGGATT+GGG | + | tig0026742:54508-54527 | Msa1430720:intron | 35.0% | |
| TTTCGAAACAGTGTAATCAC+AGG | + | tig0026742:54567-54586 | Msa1430720:CDS | 35.0% | |
| ! | ACTGTTTTGCTCAGTTAAGA+CGG | + | tig0026742:54685-54704 | Msa1430720:intron | 35.0% |
| CGGCAATGCTTAATTATACA+TGG | + | tig0026742:54705-54724 | Msa1430720:intron | 35.0% | |
| TTATGTGAGCGAGTGAAAAT+AGG | - | tig0026742:54752-54771 | None:intergenic | 35.0% | |
| ! | TTTTCACTCGCTCACATAAT+TGG | + | tig0026742:54753-54772 | Msa1430720:intron | 35.0% |
| !! | TTGTATTTTGAAAACGGGAG+GGG | - | tig0026742:54781-54800 | None:intergenic | 35.0% |
| ! | TCAGATTTTAGACCCAAAAG+CGG | + | tig0026742:54818-54837 | Msa1430720:intron | 35.0% |
| CTGTCGTAGAAACAAACTTA+TGG | + | tig0026742:54983-55002 | Msa1430720:intron | 35.0% | |
| AATCATCCAGATGAGAGAAT+TGG | - | tig0026742:55126-55145 | None:intergenic | 35.0% | |
| TCATCTGGATGATTCTATAC+TGG | + | tig0026742:55132-55151 | Msa1430720:intron | 35.0% | |
| ! | TTTTCACTCGTTTACGGAAT+TGG | - | tig0026742:55201-55220 | None:intergenic | 35.0% |
| CGTAAACGAGTGAAAATATG+TGG | + | tig0026742:55205-55224 | Msa1430720:intron | 35.0% | |
| ! | ATCAAAAGAGTGTGAAGCAA+AGG | - | tig0026742:55383-55402 | None:intergenic | 35.0% |
| GTTCTGTGGCACTAATTATA+CGG | + | tig0026742:55480-55499 | Msa1430720:CDS | 35.0% | |
| !!! | TATGAAGATTTTTTCACCCG+TGG | + | tig0026742:55509-55528 | Msa1430720:CDS | 35.0% |
| ATAGATGGACATAGATCTAG+AGG | - | tig0026742:55569-55588 | None:intergenic | 35.0% | |
| TCTACATTGCGCTTTATAGA+TGG | - | tig0026742:55584-55603 | None:intergenic | 35.0% | |
| TATAAAGCGCAATGTAGACT+GGG | + | tig0026742:55586-55605 | Msa1430720:CDS | 35.0% | |
| ! | GAGTAAACCAATACCTCTTT+TGG | - | tig0026742:55623-55642 | None:intergenic | 35.0% |
| ! | GAGCAGGTTTTTATAAGACA+TGG | - | tig0026742:55724-55743 | None:intergenic | 35.0% |
| ACAATGCTAAACATGTGACA+AGG | - | tig0026742:55863-55882 | None:intergenic | 35.0% | |
| !! | TGACCACAAAAGCTTTGTTT+AGG | + | tig0026742:56029-56048 | Msa1430720:intron | 35.0% |
| ! | CAACCTAAACAAAGCTTTTG+TGG | - | tig0026742:56035-56054 | None:intergenic | 35.0% |
| !! | CACAAAAGCTTTGTTTAGGT+TGG | + | tig0026742:56033-56052 | Msa1430720:intron | 35.0% |
| !! | TTTTTGAGAGAGCATATGAC+AGG | + | tig0026742:56130-56149 | Msa1430720:intron | 35.0% |
| ATTATACCATTAGGGCTGTT+TGG | - | tig0026742:56397-56416 | None:intergenic | 35.0% | |
| GAAAAGAGGACAAGACTATA+TGG | + | tig0026742:56655-56674 | Msa1430720:CDS | 35.0% | |
| TTACATGTTCCACCTTATCT+CGG | + | tig0026742:56706-56725 | Msa1430720:CDS | 35.0% | |
| !! | GTTTTGAGTATTCCGAGATA+AGG | - | tig0026742:56721-56740 | None:intergenic | 35.0% |
| ! | GAGTGATCTTACCTGTATTT+TGG | + | tig0026742:56896-56915 | Msa1430720:three_prime_UTR | 35.0% |
| TCACTGTGATTTCATGTTCT+TGG | - | tig0026742:56963-56982 | None:intergenic | 35.0% | |
| ! | TTTAAGAGAGCATACATTGC+GGG | + | tig0026742:57109-57128 | Msa1430720:three_prime_UTR | 35.0% |
| ! | CACAACATTTTTCACACACG+TGG | + | tig0026742:52468-52487 | Msa1430720:five_prime_UTR | 40.0% |
| ACACTCATTTCACATGATGG+TGG | - | tig0026742:52497-52516 | None:intergenic | 40.0% | |
| AGGACACTCATTTCACATGA+TGG | - | tig0026742:52500-52519 | None:intergenic | 40.0% | |
| CCTTCAAATTGTTCCTCTGT+AGG | - | tig0026742:52863-52882 | None:intergenic | 40.0% | |
| CCTACAGAGGAACAATTTGA+AGG | + | tig0026742:52860-52879 | Msa1430720:intron | 40.0% | |
| TTGGTAGGAAAAACATGCCA+TGG | - | tig0026742:53074-53093 | None:intergenic | 40.0% | |
| ! | TCTTCGTCAAAGGATTTGGT+AGG | - | tig0026742:53089-53108 | None:intergenic | 40.0% |
| AGTCTCTTCGTCAAAGGATT+TGG | - | tig0026742:53093-53112 | None:intergenic | 40.0% | |
| TGCAAAACCACAGAATTGTC+CGG | + | tig0026742:53211-53230 | Msa1430720:CDS | 40.0% | |
| AAGAAATCCGGACAATTCTG+TGG | - | tig0026742:53221-53240 | None:intergenic | 40.0% | |
| AGAATTGTCCGGATTTCTTC+CGG | + | tig0026742:53222-53241 | Msa1430720:CDS | 40.0% | |
| !! | GATTTCTAAAGGGCATTTGG+TGG | + | tig0026742:53283-53302 | Msa1430720:CDS | 40.0% |
| ! | GCATTTAGAGTGGTGATTGT+TGG | + | tig0026742:53323-53342 | Msa1430720:CDS | 40.0% |
| ! | TTTAGAGTGGTGATTGTTGG+AGG | + | tig0026742:53326-53345 | Msa1430720:CDS | 40.0% |
| TTAGAGTGGTGATTGTTGGA+GGG | + | tig0026742:53327-53346 | Msa1430720:CDS | 40.0% | |
| GTAGGGCTATGTTTACTGTT+TGG | + | tig0026742:53387-53406 | Msa1430720:CDS | 40.0% | |
| !! | GTTTGTTGCAGCTTTTGAGA+AGG | + | tig0026742:53411-53430 | Msa1430720:CDS | 40.0% |
| !!! | AGCTTTTGAGAAGGTATCCT+GGG | + | tig0026742:53420-53439 | Msa1430720:CDS | 40.0% |
| !! | TTTTCCTGATTGGTCCTTCT+GGG | + | tig0026742:53568-53587 | Msa1430720:CDS | 40.0% |
| GGGATGGTAAGATCTCAATT+AGG | + | tig0026742:53589-53608 | Msa1430720:intron | 40.0% | |
| ACGTGAATTGCTCACTTTAG+AGG | - | tig0026742:53956-53975 | None:intergenic | 40.0% | |
| AAGTGAGCAATTCACGTTAG+AGG | + | tig0026742:53959-53978 | Msa1430720:intron | 40.0% | |
| ! | GTGTTGAACATTTGTTGGTC+AGG | + | tig0026742:54201-54220 | Msa1430720:intron | 40.0% |
| CAAGGTCGTATGTTTATCTC+TGG | - | tig0026742:54227-54246 | None:intergenic | 40.0% | |
| CAGAGATAAACATACGACCT+TGG | + | tig0026742:54225-54244 | Msa1430720:CDS | 40.0% | |
| ! | AAGGTGCTCAAGTTGTTAGT+TGG | + | tig0026742:54273-54292 | Msa1430720:CDS | 40.0% |
| ATCTGGATTTCCTTTCCAGT+AGG | - | tig0026742:54318-54337 | None:intergenic | 40.0% | |
| TGCAATGGCCTTTCACAAAT+TGG | + | tig0026742:54419-54438 | Msa1430720:intron | 40.0% | |
| !! | TGTATTTTGAAAACGGGAGG+GGG | - | tig0026742:54780-54799 | None:intergenic | 40.0% |
| ! | TGGGTCTAAAATCTGAGTGA+GGG | - | tig0026742:54814-54833 | None:intergenic | 40.0% |
| ! | TTGGGTCTAAAATCTGAGTG+AGG | - | tig0026742:54815-54834 | None:intergenic | 40.0% |
| ATTGACATGACGAGCATGTT+TGG | + | tig0026742:54858-54877 | Msa1430720:intron | 40.0% | |
| TCATTTCTACGTCCCAATGA+CGG | + | tig0026742:54897-54916 | Msa1430720:intron | 40.0% | |
| AACCTGTTGTAGAATCGTCT+TGG | + | tig0026742:55013-55032 | Msa1430720:intron | 40.0% | |
| !! | AGAATTGGAGTTGGTGAAGA+GGG | - | tig0026742:55111-55130 | None:intergenic | 40.0% |
| TTCGGCGTAGATCTTATATC+TGG | - | tig0026742:55417-55436 | None:intergenic | 40.0% | |
| AGATATAAGATCTACGCCGA+AGG | + | tig0026742:55416-55435 | Msa1430720:intron | 40.0% | |
| GATATAAGATCTACGCCGAA+GGG | + | tig0026742:55417-55436 | Msa1430720:intron | 40.0% | |
| ! | TATTCTCTCATGTGGTTCTG+TGG | + | tig0026742:55466-55485 | Msa1430720:CDS | 40.0% |
| CATAGATCTAGAGGATCAAC+TGG | - | tig0026742:55560-55579 | None:intergenic | 40.0% | |
| CTATAAAGCGCAATGTAGAC+TGG | + | tig0026742:55585-55604 | Msa1430720:CDS | 40.0% | |
| ATAAAGCGCAATGTAGACTG+GGG | + | tig0026742:55587-55606 | Msa1430720:CDS | 40.0% | |
| TAGAACTATACTGGTCCACA+TGG | - | tig0026742:55678-55697 | None:intergenic | 40.0% | |
| ! | AAGCTAGCTTGGAAAGCTTA+TGG | - | tig0026742:56157-56176 | None:intergenic | 40.0% |
| GTTGTTTACACAAGCTAGCT+TGG | - | tig0026742:56168-56187 | None:intergenic | 40.0% | |
| TTTATCCAAACGGACCCTAA+TGG | + | tig0026742:56296-56315 | Msa1430720:intron | 40.0% | |
| TTATACCATTAGGGTCCGTT+TGG | - | tig0026742:56304-56323 | None:intergenic | 40.0% | |
| GTTTATCCAAACAGCCCTAA+TGG | + | tig0026742:56388-56407 | Msa1430720:intron | 40.0% | |
| CTAGGATCAGCTATGTTTCA+TGG | - | tig0026742:56464-56483 | None:intergenic | 40.0% | |
| TTGAGTATTCCGAGATAAGG+TGG | - | tig0026742:56718-56737 | None:intergenic | 40.0% | |
| AAGGCAGTTGAAGGTAAAGA+AGG | - | tig0026742:56758-56777 | None:intergenic | 40.0% | |
| TTCTTTACCTTCAACTGCCT+TGG | + | tig0026742:56757-56776 | Msa1430720:CDS | 40.0% | |
| CTCATCAGCAAAGCAAAGAA+CGG | - | tig0026742:56798-56817 | None:intergenic | 40.0% | |
| ! | TATGCAGGTTTGAGAGTACA+GGG | - | tig0026742:56872-56891 | None:intergenic | 40.0% |
| TAAGATCACTCACTCTATGC+AGG | - | tig0026742:56887-56906 | None:intergenic | 40.0% | |
| ! | AAGAGATAAGTAGGGGTACG+AGG | - | tig0026742:52675-52694 | None:intergenic | 45.0% |
| CACAGCACTTCTTCTCTACA+AGG | + | tig0026742:52728-52747 | Msa1430720:CDS | 45.0% | |
| AGGGAAATTGAGAAGTGGGT+TGG | - | tig0026742:52762-52781 | None:intergenic | 45.0% | |
| TGACATTGACACACCTACAG+AGG | + | tig0026742:52847-52866 | Msa1430720:intron | 45.0% | |
| TGAAAGCTCCTAGCACAAAC+TGG | - | tig0026742:52931-52950 | None:intergenic | 45.0% | |
| ACAACCTAGAACCAACACCA+TGG | + | tig0026742:53054-53073 | Msa1430720:CDS | 45.0% | |
| GGAAAAACATGCCATGGTGT+TGG | - | tig0026742:53068-53087 | None:intergenic | 45.0% | |
| !! | CTGTGGTTTTGCATCTTTGG+CGG | - | tig0026742:53204-53223 | None:intergenic | 45.0% |
| GAATTGTCCGGATTTCTTCC+GGG | + | tig0026742:53223-53242 | Msa1430720:CDS | 45.0% | |
| TGTTGGAGGGAAGTTGTTTG+TGG | + | tig0026742:53340-53359 | Msa1430720:CDS | 45.0% | |
| GAGGGAAGTTGTTTGTGGAT+TGG | + | tig0026742:53345-53364 | Msa1430720:CDS | 45.0% | |
| !!! | CAGCTTTTGAGAAGGTATCC+TGG | + | tig0026742:53419-53438 | Msa1430720:CDS | 45.0% |
| !! | TTTGAGAAGGTATCCTGGGT+TGG | + | tig0026742:53424-53443 | Msa1430720:CDS | 45.0% |
| CAGAAGGACCAATCAGGAAA+AGG | - | tig0026742:53569-53588 | None:intergenic | 45.0% | |
| !! | CTTTTCCTGATTGGTCCTTC+TGG | + | tig0026742:53567-53586 | Msa1430720:CDS | 45.0% |
| ! | TTTCCTGATTGGTCCTTCTG+GGG | + | tig0026742:53569-53588 | Msa1430720:CDS | 45.0% |
| ! | ATGGAGCACTAGCATAGACA+CGG | + | tig0026742:53738-53757 | Msa1430720:intron | 45.0% |
| AACTGGATGTAACCACGTGT+TGG | + | tig0026742:53814-53833 | Msa1430720:intron | 45.0% | |
| TCAGATTGAACACCAACACG+TGG | - | tig0026742:53829-53848 | None:intergenic | 45.0% | |
| ! | ATAAGAATCCGCTAGCCTAC+TGG | + | tig0026742:54300-54319 | Msa1430720:CDS | 45.0% |
| TTTCCTTTCCAGTAGGCTAG+CGG | - | tig0026742:54311-54330 | None:intergenic | 45.0% | |
| !! | ATGCGTCAGGTTGAATGCAA+TGG | + | tig0026742:54404-54423 | Msa1430720:intron | 45.0% |
| !! | CTTCTCTCATCACCGCTTTT+GGG | - | tig0026742:54833-54852 | None:intergenic | 45.0% |
| ! | ACTTCTCTCATCACCGCTTT+TGG | - | tig0026742:54834-54853 | None:intergenic | 45.0% |
| CACCAAGACGATTCTACAAC+AGG | - | tig0026742:55018-55037 | None:intergenic | 45.0% | |
| CTGTTGTAGAATCGTCTTGG+TGG | + | tig0026742:55016-55035 | Msa1430720:intron | 45.0% | |
| !! | GAGAATTGGAGTTGGTGAAG+AGG | - | tig0026742:55112-55131 | None:intergenic | 45.0% |
| CCAGATGAGAGAATTGGAGT+TGG | - | tig0026742:55120-55139 | None:intergenic | 45.0% | |
| CCAACTCCAATTCTCTCATC+TGG | + | tig0026742:55117-55136 | Msa1430720:intron | 45.0% | |
| GGCGTAGATCTTATATCTGG+TGG | - | tig0026742:55414-55433 | None:intergenic | 45.0% | |
| ! | TTTGTAGTGGAACAAGGCCA+CGG | - | tig0026742:55529-55548 | None:intergenic | 45.0% |
| ! | CAAGCACCCAAAAGAGGTAT+TGG | + | tig0026742:55613-55632 | Msa1430720:intron | 45.0% |
| TTTACCTTCAACTGCCTTGG+AGG | + | tig0026742:56760-56779 | Msa1430720:CDS | 45.0% | |
| GGGAGACAGTTGATCTACTA+AGG | - | tig0026742:56835-56854 | None:intergenic | 45.0% | |
| ! | CTATGCAGGTTTGAGAGTAC+AGG | - | tig0026742:56873-56892 | None:intergenic | 45.0% |
| GTCGGATACCAGTTTGTGCT+AGG | + | tig0026742:52920-52939 | Msa1430720:intron | 50.0% | |
| GATGACGTAGCTAGCAGAAC+CGG | + | tig0026742:53017-53036 | Msa1430720:CDS | 50.0% | |
| GTTGTGACCAACCACTGTTC+CGG | - | tig0026742:53039-53058 | None:intergenic | 50.0% | |
| !! | CATGCCATGGTGTTGGTTCT+AGG | - | tig0026742:53061-53080 | None:intergenic | 50.0% |
| CTGTCGAGTCTCTTCGTCAA+AGG | - | tig0026742:53099-53118 | None:intergenic | 50.0% | |
| CAGTGCTCTTACCTCACATG+TGG | + | tig0026742:53140-53159 | Msa1430720:CDS | 50.0% | |
| AGTCTGCAGAACCACATGTG+AGG | - | tig0026742:53154-53173 | None:intergenic | 50.0% | |
| ! | ACATGTGGTTCTGCAGACTC+TGG | + | tig0026742:53155-53174 | Msa1430720:CDS | 50.0% |
| GCATCTTTGGCGGCATAACT+AGG | - | tig0026742:53194-53213 | None:intergenic | 50.0% | |
| GAGATCTTACCATCCCCAGA+AGG | - | tig0026742:53585-53604 | None:intergenic | 50.0% | |
| TCTGGGAACTCTTCTTGCCA+AGG | - | tig0026742:54245-54264 | None:intergenic | 50.0% | |
| ! | AATCCGCTAGCCTACTGGAA+AGG | + | tig0026742:54305-54324 | Msa1430720:CDS | 50.0% |
| CGAAGAGGAGAAGCAACATC+TGG | - | tig0026742:54335-54354 | None:intergenic | 50.0% | |
| GGGAGCAGAAATTATGCGTC+AGG | + | tig0026742:54391-54410 | Msa1430720:CDS | 50.0% | |
| AGCTGCTAGAAGTGGCTTTC+AGG | + | tig0026742:54535-54554 | Msa1430720:CDS | 50.0% | |
| GACATCAAATGCACGTCCAC+AGG | - | tig0026742:54959-54978 | None:intergenic | 50.0% | |
| ! | GTTGGTGAAGAGGGAATGAG+AGG | - | tig0026742:55102-55121 | None:intergenic | 50.0% |
| CACAGACCATGCATACCCTT+CGG | - | tig0026742:55435-55454 | None:intergenic | 50.0% | |
| ! | TTGTAGTGGAACAAGGCCAC+GGG | - | tig0026742:55528-55547 | None:intergenic | 50.0% |
| GGGAAACAAGCACCCAAAAG+AGG | + | tig0026742:55607-55626 | Msa1430720:CDS | 50.0% | |
| AGGGAGACGATAGAACATCG+AGG | + | tig0026742:55824-55843 | Msa1430720:intron | 50.0% | |
| TGTTATACAGGCTGTGGCGT+TGG | + | tig0026742:56631-56650 | Msa1430720:intron | 50.0% | |
| GTTATACAGGCTGTGGCGTT+GGG | + | tig0026742:56632-56651 | Msa1430720:intron | 50.0% | |
| TTATACAGGCTGTGGCGTTG+GGG | + | tig0026742:56633-56652 | Msa1430720:intron | 50.0% | |
| CAAACCTCCAAGGCAGTTGA+AGG | - | tig0026742:56767-56786 | None:intergenic | 50.0% | |
| GCTTTGCTGATGAGAAGCAG+AGG | + | tig0026742:56804-56823 | Msa1430720:CDS | 50.0% | |
| TACAGGGAGGGGTTTGTGAA+GGG | - | tig0026742:56856-56875 | None:intergenic | 50.0% | |
| ! | AGGTTTGAGAGTACAGGGAG+GGG | - | tig0026742:56867-56886 | None:intergenic | 50.0% |
| ! | CAGGTTTGAGAGTACAGGGA+GGG | - | tig0026742:56868-56887 | None:intergenic | 50.0% |
| AGCTAGCAGAACCGGAACAG+TGG | + | tig0026742:53025-53044 | Msa1430720:CDS | 55.0% | |
| AGCAGAACCGGAACAGTGGT+TGG | + | tig0026742:53029-53048 | Msa1430720:CDS | 55.0% | |
| ! | TGTGGTTCTGCAGACTCTGG+CGG | + | tig0026742:53158-53177 | Msa1430720:CDS | 55.0% |
| TCCATGGCTCCAGATCCTTC+CGG | - | tig0026742:53253-53272 | None:intergenic | 55.0% | |
| !! | TCCTGGGTTGGTACCTGATG+TGG | + | tig0026742:53436-53455 | Msa1430720:CDS | 55.0% |
| TCCACATCAGGTACCAACCC+AGG | - | tig0026742:53440-53459 | None:intergenic | 55.0% | |
| CATCCCCAGAAGGACCAATC+AGG | - | tig0026742:53575-53594 | None:intergenic | 55.0% | |
| ! | CTGATTGGTCCTTCTGGGGA+TGG | + | tig0026742:53573-53592 | Msa1430720:CDS | 55.0% |
| TGGGATGCAGCTGCTAGAAG+TGG | + | tig0026742:54527-54546 | Msa1430720:CDS | 55.0% | |
| ! | TCTACGCCGAAGGGTATGCA+TGG | + | tig0026742:55426-55445 | Msa1430720:CDS | 55.0% |
| AACTGCCTTGGAGGTTTGCG+AGG | + | tig0026742:56769-56788 | Msa1430720:CDS | 55.0% | |
| GGATTCCTCGCAAACCTCCA+AGG | - | tig0026742:56777-56796 | None:intergenic | 55.0% | |
| ACAGGGAGGGGTTTGTGAAG+GGG | - | tig0026742:56855-56874 | None:intergenic | 55.0% | |
| GTACAGGGAGGGGTTTGTGA+AGG | - | tig0026742:56857-56876 | None:intergenic | 55.0% | |
| ! | GCAGGTTTGAGAGTACAGGG+AGG | - | tig0026742:56869-56888 | None:intergenic | 55.0% |
| GCAGACTCTGGCGGCAAAAC+AGG | + | tig0026742:53167-53186 | Msa1430720:CDS | 60.0% | |
| CGGATCGCCCGGAAGAAATC+CGG | - | tig0026742:53233-53252 | None:intergenic | 60.0% | |
| CGGATTTCTTCCGGGCGATC+CGG | + | tig0026742:53231-53250 | Msa1430720:CDS | 60.0% | |
| TTTCTTCCGGGCGATCCGGA+AGG | + | tig0026742:53235-53254 | Msa1430720:CDS | 60.0% | |
| ! | TCCGGAAGGATCTGGAGCCA+TGG | + | tig0026742:53249-53268 | Msa1430720:CDS | 60.0% |
| ! | GCTGTGGCGTTGGGGAAAAG+AGG | + | tig0026742:56641-56660 | Msa1430720:CDS | 60.0% |
| CCAGATCCTTCCGGATCGCC+CGG | - | tig0026742:53244-53263 | None:intergenic | 65.0% | |
| CCGGGCGATCCGGAAGGATC+TGG | + | tig0026742:53241-53260 | Msa1430720:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026742 | gene | 52453 | 57160 | 52453 | ID=Msa1430720;Name=Msa1430720 |
| tig0026742 | mRNA | 52453 | 57160 | 52453 | ID=Msa1430720-mRNA-1;Parent=Msa1430720;Name=Msa1430720-mRNA-1;_AED=0.06;_eAED=0.06;_QI=195|1|1|1|1|1|6|268|466 |
| tig0026742 | exon | 52453 | 52749 | 52453 | ID=Msa1430720-mRNA-1:exon:7160;Parent=Msa1430720-mRNA-1 |
| tig0026742 | exon | 53014 | 53594 | 53014 | ID=Msa1430720-mRNA-1:exon:7161;Parent=Msa1430720-mRNA-1 |
| tig0026742 | exon | 54223 | 54412 | 54223 | ID=Msa1430720-mRNA-1:exon:7162;Parent=Msa1430720-mRNA-1 |
| tig0026742 | exon | 54524 | 54588 | 54524 | ID=Msa1430720-mRNA-1:exon:7163;Parent=Msa1430720-mRNA-1 |
| tig0026742 | exon | 55418 | 55628 | 55418 | ID=Msa1430720-mRNA-1:exon:7164;Parent=Msa1430720-mRNA-1 |
| tig0026742 | exon | 56641 | 57160 | 56641 | ID=Msa1430720-mRNA-1:exon:7165;Parent=Msa1430720-mRNA-1 |
| tig0026742 | five_prime_UTR | 52453 | 52647 | 52453 | ID=Msa1430720-mRNA-1:five_prime_utr;Parent=Msa1430720-mRNA-1 |
| tig0026742 | CDS | 52648 | 52749 | 52648 | ID=Msa1430720-mRNA-1:cds;Parent=Msa1430720-mRNA-1 |
| tig0026742 | CDS | 53014 | 53594 | 53014 | ID=Msa1430720-mRNA-1:cds;Parent=Msa1430720-mRNA-1 |
| tig0026742 | CDS | 54223 | 54412 | 54223 | ID=Msa1430720-mRNA-1:cds;Parent=Msa1430720-mRNA-1 |
| tig0026742 | CDS | 54524 | 54588 | 54524 | ID=Msa1430720-mRNA-1:cds;Parent=Msa1430720-mRNA-1 |
| tig0026742 | CDS | 55418 | 55628 | 55418 | ID=Msa1430720-mRNA-1:cds;Parent=Msa1430720-mRNA-1 |
| tig0026742 | CDS | 56641 | 56892 | 56641 | ID=Msa1430720-mRNA-1:cds;Parent=Msa1430720-mRNA-1 |
| tig0026742 | three_prime_UTR | 56893 | 57160 | 56893 | ID=Msa1430720-mRNA-1:three_prime_utr;Parent=Msa1430720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
