Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458490 | XP_013460345.1 | 95.183 | 436 | 16 | 1 | 1 | 436 | 1 | 431 | 0.0 | 839 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458490 | sp|F4J1Q9|AVT1I_ARATH | 54.229 | 402 | 184 | 0 | 32 | 433 | 1 | 402 | 2.07e-155 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458490 | A0A072UYA2 | 95.183 | 436 | 16 | 1 | 1 | 436 | 1 | 431 | 0.0 | 839 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0451150 | Msa0458490 | 0.802721 | 4.905417e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458490 | MtrunA17_Chr3g0105861 | 95.183 | 436 | 16 | 1 | 1 | 436 | 1 | 431 | 0.0 | 839 |
| Msa0458490 | MtrunA17_Chr7g0217401 | 54.333 | 427 | 189 | 2 | 11 | 436 | 10 | 431 | 1.93e-163 | 467 |
| Msa0458490 | MtrunA17_Chr7g0217381 | 53.687 | 434 | 196 | 1 | 3 | 436 | 2 | 430 | 7.06e-163 | 465 |
| Msa0458490 | MtrunA17_Chr3g0090101 | 57.180 | 383 | 164 | 0 | 54 | 436 | 2 | 384 | 2.04e-150 | 432 |
| Msa0458490 | MtrunA17_Chr8g0361631 | 45.000 | 420 | 218 | 3 | 17 | 436 | 1 | 407 | 1.11e-130 | 383 |
| Msa0458490 | MtrunA17_Chr3g0105831 | 87.745 | 204 | 24 | 1 | 63 | 265 | 5 | 208 | 3.86e-127 | 366 |
| Msa0458490 | MtrunA17_Chr8g0361641 | 44.715 | 369 | 202 | 1 | 68 | 436 | 1 | 367 | 1.23e-113 | 338 |
| Msa0458490 | MtrunA17_Chr8g0361211 | 41.344 | 387 | 225 | 1 | 50 | 436 | 67 | 451 | 2.40e-109 | 330 |
| Msa0458490 | MtrunA17_Chr8g0361591 | 45.257 | 369 | 200 | 1 | 68 | 436 | 1 | 367 | 2.49e-103 | 311 |
| Msa0458490 | MtrunA17_Chr4g0022261 | 38.422 | 393 | 227 | 5 | 51 | 435 | 138 | 523 | 8.05e-95 | 295 |
| Msa0458490 | MtrunA17_Chr3g0105821 | 86.667 | 150 | 20 | 0 | 287 | 436 | 1 | 150 | 2.04e-86 | 260 |
| Msa0458490 | MtrunA17_Chr7g0239011 | 41.642 | 341 | 197 | 2 | 58 | 396 | 73 | 413 | 6.63e-83 | 262 |
| Msa0458490 | MtrunA17_Chr7g0256281 | 33.333 | 405 | 259 | 4 | 33 | 435 | 127 | 522 | 9.00e-83 | 263 |
| Msa0458490 | MtrunA17_Chr7g0239021 | 35.396 | 404 | 249 | 3 | 4 | 396 | 107 | 509 | 1.39e-82 | 264 |
| Msa0458490 | MtrunA17_Chr1g0199431 | 40.184 | 326 | 182 | 3 | 11 | 324 | 104 | 428 | 2.50e-79 | 252 |
| Msa0458490 | MtrunA17_Chr7g0256251 | 37.956 | 274 | 170 | 0 | 51 | 324 | 146 | 419 | 2.93e-69 | 225 |
| Msa0458490 | MtrunA17_Chr1g0171021 | 38.535 | 314 | 184 | 3 | 4 | 315 | 116 | 422 | 1.19e-66 | 219 |
| Msa0458490 | MtrunA17_Chr3g0122241 | 32.143 | 420 | 272 | 8 | 26 | 436 | 55 | 470 | 2.70e-56 | 193 |
| Msa0458490 | MtrunA17_Chr8g0376991 | 24.480 | 433 | 296 | 12 | 25 | 433 | 1 | 426 | 9.83e-23 | 100 |
| Msa0458490 | MtrunA17_Chr6g0458931 | 24.818 | 411 | 277 | 13 | 46 | 433 | 44 | 445 | 1.23e-19 | 90.9 |
| Msa0458490 | MtrunA17_Chr5g0407141 | 26.492 | 419 | 247 | 16 | 47 | 434 | 31 | 419 | 5.96e-18 | 85.5 |
| Msa0458490 | MtrunA17_Chr5g0422741 | 23.671 | 414 | 282 | 11 | 46 | 435 | 28 | 431 | 1.22e-17 | 84.7 |
| Msa0458490 | MtrunA17_Chr7g0268151 | 29.384 | 211 | 136 | 4 | 231 | 432 | 63 | 269 | 1.61e-17 | 82.4 |
| Msa0458490 | MtrunA17_Chr6g0459031 | 24.766 | 428 | 283 | 13 | 33 | 433 | 3 | 418 | 5.69e-17 | 82.8 |
| Msa0458490 | MtrunA17_Chr2g0328081 | 24.396 | 414 | 276 | 12 | 46 | 433 | 16 | 418 | 6.95e-17 | 82.4 |
| Msa0458490 | MtrunA17_Chr4g0057851 | 23.002 | 413 | 282 | 13 | 46 | 433 | 12 | 413 | 1.50e-16 | 81.3 |
| Msa0458490 | MtrunA17_Chr6g0458921 | 25.060 | 415 | 272 | 14 | 46 | 433 | 16 | 418 | 1.59e-16 | 81.3 |
| Msa0458490 | MtrunA17_Chr1g0198541 | 24.554 | 448 | 284 | 14 | 15 | 433 | 5 | 427 | 3.40e-16 | 80.5 |
| Msa0458490 | MtrunA17_Chr7g0256241 | 35.088 | 114 | 73 | 1 | 321 | 434 | 3 | 115 | 1.35e-15 | 72.8 |
| Msa0458490 | MtrunA17_Chr8g0370311 | 25.342 | 438 | 261 | 17 | 30 | 432 | 2 | 408 | 2.91e-15 | 77.4 |
| Msa0458490 | MtrunA17_Chr1g0199441 | 34.483 | 116 | 73 | 2 | 322 | 436 | 33 | 146 | 4.29e-15 | 72.4 |
| Msa0458490 | MtrunA17_Chr2g0331721 | 24.679 | 389 | 262 | 12 | 46 | 411 | 49 | 429 | 6.06e-15 | 76.6 |
| Msa0458490 | MtrunA17_Chr1g0198531 | 23.022 | 417 | 281 | 11 | 46 | 435 | 26 | 429 | 1.31e-14 | 75.5 |
| Msa0458490 | MtrunA17_Chr7g0230011 | 24.396 | 414 | 279 | 13 | 46 | 435 | 32 | 435 | 4.75e-14 | 73.9 |
| Msa0458490 | MtrunA17_Chr1g0171011 | 31.897 | 116 | 76 | 2 | 322 | 436 | 23 | 136 | 3.98e-13 | 66.6 |
| Msa0458490 | MtrunA17_Chr8g0366021 | 26.966 | 356 | 197 | 18 | 13 | 330 | 17 | 347 | 7.98e-13 | 70.1 |
| Msa0458490 | MtrunA17_Chr6g0459021 | 24.208 | 442 | 285 | 16 | 19 | 433 | 19 | 437 | 1.37e-12 | 69.3 |
| Msa0458490 | MtrunA17_Chr3g0122921 | 21.670 | 443 | 287 | 14 | 19 | 433 | 8 | 418 | 2.69e-11 | 65.1 |
| Msa0458490 | MtrunA17_Chr6g0459011 | 23.869 | 398 | 265 | 13 | 62 | 433 | 3 | 388 | 6.63e-11 | 63.9 |
| Msa0458490 | MtrunA17_Chr2g0333321 | 23.325 | 403 | 268 | 15 | 54 | 424 | 82 | 475 | 9.68e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458490 | AT3G28960.5 | 54.229 | 402 | 184 | 0 | 32 | 433 | 1 | 402 | 2.10e-156 | 448 |
| Msa0458490 | AT3G28960.2 | 54.229 | 402 | 184 | 0 | 32 | 433 | 1 | 402 | 2.10e-156 | 448 |
| Msa0458490 | AT3G28960.3 | 54.229 | 402 | 184 | 0 | 32 | 433 | 1 | 402 | 2.10e-156 | 448 |
| Msa0458490 | AT3G28960.1 | 54.229 | 402 | 184 | 0 | 32 | 433 | 1 | 402 | 2.10e-156 | 448 |
| Msa0458490 | AT5G15240.1 | 52.184 | 412 | 190 | 2 | 22 | 432 | 14 | 419 | 2.42e-151 | 436 |
| Msa0458490 | AT3G28960.4 | 55.856 | 333 | 147 | 0 | 101 | 433 | 1 | 333 | 2.71e-133 | 387 |
| Msa0458490 | AT5G15240.3 | 52.853 | 333 | 156 | 1 | 101 | 432 | 1 | 333 | 1.60e-121 | 357 |
| Msa0458490 | AT2G41190.1 | 39.175 | 388 | 235 | 1 | 48 | 435 | 148 | 534 | 5.35e-105 | 322 |
| Msa0458490 | AT2G39130.2 | 36.526 | 449 | 265 | 5 | 7 | 436 | 101 | 548 | 7.48e-101 | 311 |
| Msa0458490 | AT2G39130.1 | 36.526 | 449 | 265 | 5 | 7 | 436 | 101 | 548 | 7.48e-101 | 311 |
| Msa0458490 | AT5G02180.1 | 39.378 | 386 | 231 | 3 | 46 | 429 | 157 | 541 | 1.98e-97 | 303 |
| Msa0458490 | AT5G02180.2 | 39.378 | 386 | 231 | 3 | 46 | 429 | 157 | 541 | 1.98e-97 | 303 |
| Msa0458490 | AT3G54830.2 | 40.420 | 381 | 214 | 4 | 15 | 382 | 112 | 492 | 9.34e-94 | 293 |
| Msa0458490 | AT3G54830.1 | 40.420 | 381 | 214 | 4 | 15 | 382 | 112 | 492 | 9.34e-94 | 293 |
| Msa0458490 | AT5G02170.1 | 38.596 | 342 | 208 | 1 | 57 | 396 | 145 | 486 | 2.55e-93 | 291 |
| Msa0458490 | AT3G09340.1 | 36.041 | 394 | 247 | 4 | 46 | 436 | 132 | 523 | 1.50e-91 | 287 |
| Msa0458490 | AT3G09330.1 | 35.787 | 394 | 248 | 4 | 46 | 436 | 132 | 523 | 1.92e-90 | 284 |
| Msa0458490 | AT2G39130.3 | 37.047 | 386 | 224 | 4 | 7 | 373 | 101 | 486 | 9.81e-89 | 278 |
| Msa0458490 | AT2G41190.2 | 39.628 | 323 | 195 | 0 | 48 | 370 | 148 | 470 | 5.96e-88 | 277 |
| Msa0458490 | AT5G02170.2 | 36.550 | 342 | 186 | 2 | 57 | 396 | 145 | 457 | 7.89e-81 | 257 |
| Msa0458490 | AT5G16740.1 | 31.726 | 394 | 261 | 4 | 46 | 436 | 32 | 420 | 5.42e-60 | 202 |
| Msa0458490 | AT5G15240.2 | 52.047 | 171 | 82 | 0 | 262 | 432 | 139 | 309 | 3.05e-53 | 181 |
| Msa0458490 | AT5G15240.2 | 56.204 | 137 | 54 | 1 | 22 | 158 | 14 | 144 | 3.28e-45 | 159 |
| Msa0458490 | AT2G42005.1 | 26.376 | 436 | 229 | 16 | 47 | 435 | 23 | 413 | 9.02e-24 | 103 |
| Msa0458490 | AT3G11900.2 | 25.659 | 417 | 266 | 14 | 46 | 432 | 30 | 432 | 1.52e-16 | 81.6 |
| Msa0458490 | AT3G11900.1 | 25.659 | 417 | 266 | 14 | 46 | 432 | 30 | 432 | 1.52e-16 | 81.6 |
| Msa0458490 | AT1G61270.1 | 23.810 | 420 | 278 | 14 | 46 | 436 | 35 | 441 | 3.86e-16 | 80.5 |
| Msa0458490 | AT3G01760.1 | 22.494 | 449 | 299 | 14 | 16 | 436 | 13 | 440 | 5.34e-16 | 80.1 |
| Msa0458490 | AT1G24400.1 | 23.776 | 429 | 290 | 14 | 33 | 435 | 16 | 433 | 1.71e-14 | 75.5 |
| Msa0458490 | AT4G38250.1 | 25.783 | 415 | 262 | 15 | 47 | 432 | 34 | 431 | 2.80e-14 | 74.7 |
| Msa0458490 | AT5G40780.1 | 22.500 | 440 | 299 | 16 | 18 | 430 | 12 | 436 | 6.99e-14 | 73.6 |
| Msa0458490 | AT1G71680.1 | 22.072 | 444 | 305 | 12 | 18 | 433 | 8 | 438 | 6.48e-12 | 67.8 |
| Msa0458490 | AT5G65990.1 | 23.389 | 419 | 260 | 15 | 47 | 435 | 38 | 425 | 2.22e-11 | 65.9 |
| Msa0458490 | AT1G25530.1 | 22.328 | 421 | 277 | 12 | 47 | 435 | 30 | 432 | 3.35e-11 | 65.5 |
Find 88 sgRNAs with CRISPR-Local
Find 221 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTGCTACTTGAAGATTTC+AGG | 0.180805 | 3_3:-54230094 | Msa0458490:CDS |
| GCTGTGACCATTCCCTTATT+TGG | 0.204430 | 3_3:-54230178 | Msa0458490:CDS |
| TCAGAATTTGTAAGTTTCTT+TGG | 0.209466 | 3_3:-54229966 | Msa0458490:exon |
| TTGCAAATTACTTTATTTCT+TGG | 0.223149 | 3_3:-54229889 | Msa0458490:three_prime_UTR |
| TGACATAAGATATCCAAATA+AGG | 0.266902 | 3_3:+54230165 | None:intergenic |
| TCAGGATCATACAAGAGATT+TGG | 0.281018 | 3_3:-54230076 | Msa0458490:CDS |
| AATTATTCAATAATTGTAAT+GGG | 0.293976 | 3_3:-54230037 | Msa0458490:CDS |
| CTCCATTGAAGTACCACTTT+TGG | 0.299479 | 3_3:-54233669 | Msa0458490:CDS |
| TATGCAGCAGCAGCAGTTCT+AGG | 0.328706 | 3_3:-54230436 | Msa0458490:CDS |
| CAGGATCATACAAGAGATTT+GGG | 0.329694 | 3_3:-54230075 | Msa0458490:CDS |
| GTTCTAGGGTACTTAATGTT+TGG | 0.334538 | 3_3:-54230421 | Msa0458490:CDS |
| CAGGAAAGGTTCTGATATTA+AGG | 0.358857 | 3_3:+54231228 | None:intergenic |
| TTGTAGAGAGTAGGAAGAAT+TGG | 0.363314 | 3_3:+54230801 | None:intergenic |
| GGATATCTTATGTCACTTGT+TGG | 0.366451 | 3_3:-54230157 | Msa0458490:CDS |
| CATGCAATTATTACAACAAA+AGG | 0.371747 | 3_3:-54230252 | Msa0458490:CDS |
| GATACCATTAATCTCCCTTT+GGG | 0.372516 | 3_3:+54231182 | None:intergenic |
| GAACTCTATCTTGCTGTTAC+CGG | 0.374940 | 3_3:-54231143 | Msa0458490:CDS |
| TAATTATTCAATAATTGTAA+TGG | 0.375322 | 3_3:-54230038 | Msa0458490:CDS |
| ATTGATGGAACAGGGTTTCA+TGG | 0.377251 | 3_3:-54230897 | Msa0458490:CDS |
| TTGAACTCAACTTTCCTGTT+TGG | 0.380826 | 3_3:+54230365 | None:intergenic |
| AACTCAACTTTCCTGTTTGG+AGG | 0.384347 | 3_3:+54230368 | None:intergenic |
| TGATACCATTAATCTCCCTT+TGG | 0.389795 | 3_3:+54231181 | None:intergenic |
| CGGACCCAAAGGGAGATTAA+TGG | 0.395939 | 3_3:-54231186 | Msa0458490:CDS |
| CAACAAAAGGGTTACACATA+TGG | 0.399096 | 3_3:-54230239 | Msa0458490:CDS |
| TTGTGGAATGGTGCAATTGA+TGG | 0.399316 | 3_3:-54230912 | Msa0458490:CDS |
| ATACCTTATGCACTAGCATC+TGG | 0.414036 | 3_3:-54231338 | Msa0458490:CDS |
| ACCAAGTGAATGATTCAAAT+GGG | 0.415568 | 3_3:-54233631 | Msa0458490:CDS |
| CTGAGATAGCATTAACTAGA+TGG | 0.421552 | 3_3:+54233537 | None:intergenic |
| TTGTTGTCTTATGTTTCTGC+TGG | 0.424124 | 3_3:-54230972 | Msa0458490:CDS |
| TACCAAGTGAATGATTCAAA+TGG | 0.427716 | 3_3:-54233632 | Msa0458490:CDS |
| GACATAAGATATCCAAATAA+GGG | 0.428564 | 3_3:+54230166 | None:intergenic |
| CCTCCAGATGCTAGTGCATA+AGG | 0.428913 | 3_3:+54231335 | None:intergenic |
| CAAGAGATTTGGGTGTGAAA+TGG | 0.431267 | 3_3:-54230065 | Msa0458490:CDS |
| TCCTTCTAAAATAAGAAAAC+CGG | 0.435747 | 3_3:+54231124 | None:intergenic |
| CGTTCGGTACTAGTTTGTTA+AGG | 0.436402 | 3_3:+54231096 | None:intergenic |
| ATCTTCAAGTAGCAAATTGA+TGG | 0.436898 | 3_3:+54230100 | None:intergenic |
| CACCTAGCAGGATTAACAAT+TGG | 0.437085 | 3_3:-54231065 | Msa0458490:CDS |
| TATAGAGAGAGTGGTGTAAT+GGG | 0.437629 | 3_3:-54229925 | Msa0458490:three_prime_UTR |
| CATTACACCACTCTCTCTAT+AGG | 0.443930 | 3_3:+54229927 | None:intergenic |
| GCTAGGTGAATTTGCACGTT+CGG | 0.452957 | 3_3:+54231080 | None:intergenic |
| CATCTAGTTAATGCTATCTC+AGG | 0.453902 | 3_3:-54233536 | Msa0458490:intron |
| CTATAGAGAGAGTGGTGTAA+TGG | 0.473419 | 3_3:-54229926 | Msa0458490:three_prime_UTR |
| AATGGTGCAATTGATGGAAC+AGG | 0.475315 | 3_3:-54230906 | Msa0458490:CDS |
| TTCCAAAAGTGGTACTTCAA+TGG | 0.478533 | 3_3:+54233667 | None:intergenic |
| TTGTCTTATGTTTCTGCTGG+TGG | 0.491551 | 3_3:-54230969 | Msa0458490:CDS |
| CCCCATTTGAATCATTCACT+TGG | 0.495081 | 3_3:+54233630 | None:intergenic |
| ATGCAATTATTACAACAAAA+GGG | 0.498882 | 3_3:-54230251 | Msa0458490:CDS |
| ATCACCTTGCTCAGCAGCCA+TGG | 0.502801 | 3_3:+54233700 | None:intergenic |
| GTAACATTAAACCTCCAAAC+AGG | 0.506404 | 3_3:-54230379 | Msa0458490:CDS |
| GACATAGGTCAACATGCATT+CGG | 0.508528 | 3_3:-54231206 | Msa0458490:CDS |
| TGGATGAGCACTATAACAAA+AGG | 0.515129 | 3_3:+54230821 | None:intergenic |
| TGGAGAACAAGTTGAATCAC+AGG | 0.523008 | 3_3:-54230401 | Msa0458490:CDS |
| GGAACAGGGTTTCATGGTAA+AGG | 0.523162 | 3_3:-54230891 | Msa0458490:CDS |
| TTATTCAATAATTGTAATGG+GGG | 0.524982 | 3_3:-54230035 | Msa0458490:CDS |
| ATTATTCAATAATTGTAATG+GGG | 0.532250 | 3_3:-54230036 | Msa0458490:CDS |
| AATGCATGTTGACCTATGTC+AGG | 0.538557 | 3_3:+54231209 | None:intergenic |
| ATGCAGCAGCAGCAGTTCTA+GGG | 0.547005 | 3_3:-54230435 | Msa0458490:CDS |
| CAGGGTTTCATGGTAAAGGA+AGG | 0.550822 | 3_3:-54230887 | Msa0458490:CDS |
| TCAATATCACATGGTTCATG+TGG | 0.553688 | 3_3:-54233588 | Msa0458490:CDS |
| AACGTGCAAATTCACCTAGC+AGG | 0.559395 | 3_3:-54231077 | Msa0458490:CDS |
| AAGATATCCAAATAAGGGAA+TGG | 0.559723 | 3_3:+54230171 | None:intergenic |
| CCCTGTGTAACAACATGCTA+TGG | 0.561668 | 3_3:+54231280 | None:intergenic |
| GCCATAGCATGTTGTTACAC+AGG | 0.563350 | 3_3:-54231281 | Msa0458490:CDS |
| CTAGCAGGATTAACAATTGG+TGG | 0.578790 | 3_3:-54231062 | Msa0458490:CDS |
| TACTCCATGGCTGCTGAGCA+AGG | 0.579510 | 3_3:-54233704 | Msa0458490:exon |
| CAACATGCATTCGGACCCAA+AGG | 0.584388 | 3_3:-54231197 | Msa0458490:CDS |
| AGGGTTTCATGGTAAAGGAA+GGG | 0.593801 | 3_3:-54230886 | Msa0458490:CDS |
| GCATACAAACTAACAGCAGA+AGG | 0.594296 | 3_3:+54230843 | None:intergenic |
| ATGCACTAGCATCTGGAGGA+TGG | 0.597399 | 3_3:-54231331 | Msa0458490:CDS |
| CCAAGTGAATGATTCAAATG+GGG | 0.599010 | 3_3:-54233630 | Msa0458490:CDS |
| TACACCACTCTCTCTATAGG+AGG | 0.600468 | 3_3:+54229930 | None:intergenic |
| CCATAGCATGTTGTTACACA+GGG | 0.604709 | 3_3:-54231280 | Msa0458490:CDS |
| CAAAAGTGGTACTTCAATGG+AGG | 0.610123 | 3_3:+54233670 | None:intergenic |
| ATCTTCTCGAGTGTACTCCA+TGG | 0.612144 | 3_3:-54233717 | Msa0458490:exon |
| ATGTTGTTACACAGGGACAT+TGG | 0.616029 | 3_3:-54231273 | Msa0458490:CDS |
| TACTCTCTACAATTCGATGA+GGG | 0.619009 | 3_3:-54230790 | Msa0458490:CDS |
| ATCAGAACCTTTCCTGACAT+AGG | 0.626705 | 3_3:-54231221 | Msa0458490:CDS |
| ATGTCCTCTAACAAAACAGT+AGG | 0.628376 | 3_3:+54230999 | None:intergenic |
| CAATATCACATGGTTCATGT+GGG | 0.632004 | 3_3:-54233587 | Msa0458490:CDS |
| AGGAAAGTTGAGTTCAAGAG+TGG | 0.632537 | 3_3:-54230359 | Msa0458490:CDS |
| CACCAATTGTTAATCCTGCT+AGG | 0.640186 | 3_3:+54231063 | None:intergenic |
| ATGTTGACCTATGTCAGGAA+AGG | 0.648068 | 3_3:+54231214 | None:intergenic |
| AACATGCATTCGGACCCAAA+GGG | 0.652570 | 3_3:-54231196 | Msa0458490:CDS |
| CCTTATGCACTAGCATCTGG+AGG | 0.658489 | 3_3:-54231335 | Msa0458490:CDS |
| AAATAAGGATCAATATCACA+TGG | 0.663634 | 3_3:-54233597 | Msa0458490:CDS |
| CTACTCTCTACAATTCGATG+AGG | 0.664124 | 3_3:-54230791 | Msa0458490:CDS |
| CTCATCGAATTGTAGAGAGT+AGG | 0.681562 | 3_3:+54230792 | None:intergenic |
| ATGGTGCAATTGATGGAACA+GGG | 0.728483 | 3_3:-54230905 | Msa0458490:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAAAAAATAATTTTTT+AGG | - | chr3_3:54230688-54230707 | Msa0458490:intron | 0.0% |
| !!! | TTTGAATTTGTTATTTTATT+CGG | - | chr3_3:54230522-54230541 | Msa0458490:intron | 10.0% |
| !!! | TTTTATTATAAATGTGTTTA+GGG | + | chr3_3:54230677-54230696 | None:intergenic | 10.0% |
| !!! | TTTTTATTATAAATGTGTTT+AGG | + | chr3_3:54230678-54230697 | None:intergenic | 10.0% |
| !! | AATTTAATAACTAATGTATT+TGG | + | chr3_3:54230752-54230771 | None:intergenic | 10.0% |
| !!! | TAAATCAACTTTTTTTTTTT+AGG | - | chr3_3:54230992-54231011 | Msa0458490:CDS | 10.0% |
| !!! | AAATCAACTTTTTTTTTTTA+GGG | - | chr3_3:54230993-54231012 | Msa0458490:CDS | 10.0% |
| !! | AATAACAAATTTAATTAGTT+GGG | + | chr3_3:54231129-54231148 | None:intergenic | 10.0% |
| !! | AAATAACAAATTTAATTAGT+TGG | + | chr3_3:54231130-54231149 | None:intergenic | 10.0% |
| !!! | AACTAATTAAATTTGTTATT+TGG | - | chr3_3:54231129-54231148 | Msa0458490:CDS | 10.0% |
| !!! | AGATCAAAATTTTTTAAAAA+AGG | + | chr3_3:54231816-54231835 | None:intergenic | 10.0% |
| !! | TAATTATTCAATAATTGTAA+TGG | - | chr3_3:54233571-54233590 | Msa0458490:CDS | 10.0% |
| !! | AATTATTCAATAATTGTAAT+GGG | - | chr3_3:54233572-54233591 | Msa0458490:CDS | 10.0% |
| !! | TTTATTATAAATGTGTTTAG+GGG | + | chr3_3:54230676-54230695 | None:intergenic | 15.0% |
| !!! | TAATCTTCAACATTTTTTTA+AGG | - | chr3_3:54231030-54231049 | Msa0458490:CDS | 15.0% |
| !!! | AATCTTCAACATTTTTTTAA+GGG | - | chr3_3:54231031-54231050 | Msa0458490:CDS | 15.0% |
| !!! | TAATTAAATTTGTTATTTGG+CGG | - | chr3_3:54231132-54231151 | Msa0458490:CDS | 15.0% |
| !!! | TATTTTAATGTCAATACATA+TGG | - | chr3_3:54231422-54231441 | Msa0458490:intron | 15.0% |
| !!! | ATTTTAATGTCAATACATAT+GGG | - | chr3_3:54231423-54231442 | Msa0458490:intron | 15.0% |
| !!! | TAAAAGTTACTTATTTTATG+TGG | + | chr3_3:54231588-54231607 | None:intergenic | 15.0% |
| !! | TATGTAAATAGTTAAAGAAA+TGG | + | chr3_3:54231678-54231697 | None:intergenic | 15.0% |
| !!! | CAATTTTTTTAATCCAAAAA+TGG | - | chr3_3:54231842-54231861 | Msa0458490:intron | 15.0% |
| !!! | CAAAAAACTGATTTTAAAAA+GGG | - | chr3_3:54232015-54232034 | Msa0458490:intron | 15.0% |
| !! | ATTATTCAATAATTGTAATG+GGG | - | chr3_3:54233573-54233592 | Msa0458490:CDS | 15.0% |
| !! | AAGAATCAAGAACAAATTAA+GGG | + | chr3_3:54230145-54230164 | None:intergenic | 20.0% |
| !!! | AAACCTTATTGTTTTTATTG+AGG | - | chr3_3:54230547-54230566 | Msa0458490:intron | 20.0% |
| !! | AAGACATACATATACTTATT+AGG | + | chr3_3:54230581-54230600 | None:intergenic | 20.0% |
| !!! | AGTATATGTATGTCTTATTT+TGG | - | chr3_3:54230585-54230604 | Msa0458490:intron | 20.0% |
| !! | TATTGAACAATCAATGTATT+TGG | - | chr3_3:54230713-54230732 | Msa0458490:intron | 20.0% |
| !! | TTTATAAATATGATTGGATG+AGG | - | chr3_3:54230800-54230819 | Msa0458490:CDS | 20.0% |
| !! | CATAAAATTACACGTATTAT+GGG | + | chr3_3:54230876-54230895 | None:intergenic | 20.0% |
| !! | TCATAAAATTACACGTATTA+TGG | + | chr3_3:54230877-54230896 | None:intergenic | 20.0% |
| !!! | CCTTTTTAAAATCAGTTTTT+TGG | + | chr3_3:54232017-54232036 | None:intergenic | 20.0% |
| !!! | CCAAAAAACTGATTTTAAAA+AGG | - | chr3_3:54232014-54232033 | Msa0458490:intron | 20.0% |
| !!! | ATTAATGCATATTTTGCTAT+TGG | + | chr3_3:54233299-54233318 | None:intergenic | 20.0% |
| !! | ATGCAATTATTACAACAAAA+GGG | - | chr3_3:54233358-54233377 | Msa0458490:intron | 20.0% |
| !! | TTATTCAATAATTGTAATGG+GGG | - | chr3_3:54233574-54233593 | Msa0458490:CDS | 20.0% |
| !!! | TTGCAAATTACTTTATTTCT+TGG | - | chr3_3:54233720-54233739 | Msa0458490:exon | 20.0% |
| ! | AAATAAGGATCAATATCACA+TGG | - | chr3_3:54230012-54230031 | Msa0458490:CDS | 25.0% |
| ! | CAAGAATCAAGAACAAATTA+AGG | + | chr3_3:54230146-54230165 | None:intergenic | 25.0% |
| !!! | TGATTTTTAAGTATCATGAG+TGG | + | chr3_3:54230226-54230245 | None:intergenic | 25.0% |
| ! | TAACAAATTCAAAATGCATG+TGG | + | chr3_3:54230515-54230534 | None:intergenic | 25.0% |
| !!! | TTGGATGAGGTAATTTTTTT+AGG | - | chr3_3:54230813-54230832 | Msa0458490:CDS | 25.0% |
| !!! | TGGATGAGGTAATTTTTTTA+GGG | - | chr3_3:54230814-54230833 | Msa0458490:CDS | 25.0% |
| ! | TTAGGACAAAATTAAACTCA+CGG | - | chr3_3:54230936-54230955 | Msa0458490:CDS | 25.0% |
| ! | GAGATAATGATGTGTAATTA+AGG | - | chr3_3:54231164-54231183 | Msa0458490:CDS | 25.0% |
| ! | GTAGGATCTAATAGAATAAA+GGG | + | chr3_3:54231258-54231277 | None:intergenic | 25.0% |
| ! | AGTAGGATCTAATAGAATAA+AGG | + | chr3_3:54231259-54231278 | None:intergenic | 25.0% |
| ! | TAGAGATAACGATATGTAAA+TGG | - | chr3_3:54231372-54231391 | Msa0458490:intron | 25.0% |
| !! | TTCAATTTTTCATGATCCAA+TGG | - | chr3_3:54231618-54231637 | Msa0458490:intron | 25.0% |
| ! | AAACAACACACTAACAAAAT+GGG | + | chr3_3:54231646-54231665 | None:intergenic | 25.0% |
| ! | AAAACAACACACTAACAAAA+TGG | + | chr3_3:54231647-54231666 | None:intergenic | 25.0% |
| !! | ATTTATGCTTATTGCAGTTT+TGG | - | chr3_3:54231756-54231775 | Msa0458490:intron | 25.0% |
| !! | AAGATGGATTTATAATGTAC+AGG | + | chr3_3:54231907-54231926 | None:intergenic | 25.0% |
| ! | TAATTTACATGGCATAAAAC+TGG | + | chr3_3:54231946-54231965 | None:intergenic | 25.0% |
| !! | AAAATGTTTGACTGTAGTTT+TGG | + | chr3_3:54232075-54232094 | None:intergenic | 25.0% |
| ! | TTTGATTCTTCTCTAATTTC+AGG | - | chr3_3:54232232-54232251 | Msa0458490:intron | 25.0% |
| !!! | TCCTTCTAAAATAAGAAAAC+CGG | + | chr3_3:54232488-54232507 | None:intergenic | 25.0% |
| ! | ATGCTAAAAAGCTTAAAGAT+AGG | + | chr3_3:54233142-54233161 | None:intergenic | 25.0% |
| ! | CATAAATGCCATAAAAACAA+AGG | - | chr3_3:54233331-54233350 | Msa0458490:intron | 25.0% |
| ! | CATGCAATTATTACAACAAA+AGG | - | chr3_3:54233357-54233376 | Msa0458490:intron | 25.0% |
| ! | GACATAAGATATCCAAATAA+GGG | + | chr3_3:54233446-54233465 | None:intergenic | 25.0% |
| ! | TGACATAAGATATCCAAATA+AGG | + | chr3_3:54233447-54233466 | None:intergenic | 25.0% |
| ! | TCAGAATTTGTAAGTTTCTT+TGG | - | chr3_3:54233643-54233662 | Msa0458490:CDS | 25.0% |
| !!! | ACTTTTTCATCTTCCAAAAG+TGG | + | chr3_3:54229956-54229975 | None:intergenic | 30.0% |
| TACCAAGTGAATGATTCAAA+TGG | - | chr3_3:54229977-54229996 | Msa0458490:CDS | 30.0% | |
| ACCAAGTGAATGATTCAAAT+GGG | - | chr3_3:54229978-54229997 | Msa0458490:CDS | 30.0% | |
| ! | TTTAGTCTCCATTTTCAATG+TGG | - | chr3_3:54230187-54230206 | Msa0458490:CDS | 30.0% |
| ! | TTAGTCTCCATTTTCAATGT+GGG | - | chr3_3:54230188-54230207 | Msa0458490:CDS | 30.0% |
| CTTAAAACCCACATTGAAAA+TGG | + | chr3_3:54230198-54230217 | None:intergenic | 30.0% | |
| ! | CATTTTCAATGTGGGTTTTA+AGG | - | chr3_3:54230196-54230215 | Msa0458490:CDS | 30.0% |
| AAACCATCATATCAATCACA+AGG | + | chr3_3:54230305-54230324 | None:intergenic | 30.0% | |
| CATCACTTTGACAAAAAAGT+AGG | - | chr3_3:54230331-54230350 | Msa0458490:CDS | 30.0% | |
| CTGCCTCAATAAAAACAATA+AGG | + | chr3_3:54230553-54230572 | None:intergenic | 30.0% | |
| AAATTACACGTATTATGGGA+AGG | + | chr3_3:54230872-54230891 | None:intergenic | 30.0% | |
| TAGGACAAAATTAAACTCAC+GGG | - | chr3_3:54230937-54230956 | Msa0458490:CDS | 30.0% | |
| TGAATTGAAATATAGTCGCT+AGG | + | chr3_3:54231465-54231484 | None:intergenic | 30.0% | |
| TAACAACACATGATTGAATG+AGG | + | chr3_3:54231552-54231571 | None:intergenic | 30.0% | |
| ! | TTTTCACTTGCTCATGAAAT+TGG | - | chr3_3:54231787-54231806 | Msa0458490:intron | 30.0% |
| ! | AATTGCTACGTAACCATTTT+TGG | + | chr3_3:54231858-54231877 | None:intergenic | 30.0% |
| TTAACGTAGAATCATCAAGA+TGG | + | chr3_3:54231923-54231942 | None:intergenic | 30.0% | |
| !! | TAGGTTTTTCGATTCAAAAG+TGG | + | chr3_3:54231985-54232004 | None:intergenic | 30.0% |
| ! | CTAGTTAATTGGTAATCAGT+TGG | + | chr3_3:54232200-54232219 | None:intergenic | 30.0% |
| TCAGTCAAATGCTAGTTAAT+TGG | + | chr3_3:54232211-54232230 | None:intergenic | 30.0% | |
| !!! | ACCGGTTTTCTTATTTTAGA+AGG | - | chr3_3:54232484-54232503 | Msa0458490:intron | 30.0% |
| !!! | TTTTGCTATTGGATTGACTA+AGG | + | chr3_3:54233288-54233307 | None:intergenic | 30.0% |
| ! | GTTTTTATGGCATTTATGAC+TGG | + | chr3_3:54233329-54233348 | None:intergenic | 30.0% |
| !!! | GCATGAAACCTTTGTTTTTA+TGG | + | chr3_3:54233342-54233361 | None:intergenic | 30.0% |
| AAGATATCCAAATAAGGGAA+TGG | + | chr3_3:54233441-54233460 | None:intergenic | 30.0% | |
| ATCTTCAAGTAGCAAATTGA+TGG | + | chr3_3:54233512-54233531 | None:intergenic | 30.0% | |
| ! | ATTTGCTACTTGAAGATTTC+AGG | - | chr3_3:54233515-54233534 | Msa0458490:intron | 30.0% |
| TTCCAAAAGTGGTACTTCAA+TGG | + | chr3_3:54229945-54229964 | None:intergenic | 35.0% | |
| CCAAGTGAATGATTCAAATG+GGG | - | chr3_3:54229979-54229998 | Msa0458490:CDS | 35.0% | |
| TGGGGTTGTGTCAAAAAATA+AGG | - | chr3_3:54229997-54230016 | Msa0458490:CDS | 35.0% | |
| TCAATATCACATGGTTCATG+TGG | - | chr3_3:54230021-54230040 | Msa0458490:CDS | 35.0% | |
| CAATATCACATGGTTCATGT+GGG | - | chr3_3:54230022-54230041 | Msa0458490:CDS | 35.0% | |
| CTGAGATAGCATTAACTAGA+TGG | + | chr3_3:54230075-54230094 | None:intergenic | 35.0% | |
| CATCTAGTTAATGCTATCTC+AGG | - | chr3_3:54230073-54230092 | Msa0458490:CDS | 35.0% | |
| ATGAGGCAATAAAAGAGAGA+GGG | + | chr3_3:54230110-54230129 | None:intergenic | 35.0% | |
| TATGAGGCAATAAAAGAGAG+AGG | + | chr3_3:54230111-54230130 | None:intergenic | 35.0% | |
| !!! | TTTCAATGTGGGTTTTAAGG+TGG | - | chr3_3:54230199-54230218 | Msa0458490:CDS | 35.0% |
| !!! | TTCAATGTGGGTTTTAAGGT+GGG | - | chr3_3:54230200-54230219 | Msa0458490:CDS | 35.0% |
| ! | CTTTTCCACATTCGTCTTTT+AGG | - | chr3_3:54230918-54230937 | Msa0458490:CDS | 35.0% |
| TTTGTCCTAAAAGACGAATG+TGG | + | chr3_3:54230926-54230945 | None:intergenic | 35.0% | |
| ! | TGTTATTTGGCGGAAATCAA+AGG | - | chr3_3:54231142-54231161 | Msa0458490:CDS | 35.0% |
| GACAAAGTGAAAATCAGAGT+AGG | + | chr3_3:54231276-54231295 | None:intergenic | 35.0% | |
| TGCATTCATTTGCAGCTATT+TGG | - | chr3_3:54231296-54231315 | Msa0458490:CDS | 35.0% | |
| GCATTCATTTGCAGCTATTT+GGG | - | chr3_3:54231297-54231316 | Msa0458490:CDS | 35.0% | |
| CAGTCATCATTTGGATACAA+TGG | + | chr3_3:54231332-54231351 | None:intergenic | 35.0% | |
| GCAATATCTCAGTCATCATT+TGG | + | chr3_3:54231341-54231360 | None:intergenic | 35.0% | |
| TGACTGAGATATTGCTTTCA+AGG | - | chr3_3:54231346-54231365 | Msa0458490:CDS | 35.0% | |
| TTGAAATATAGTCGCTAGGA+TGG | + | chr3_3:54231461-54231480 | None:intergenic | 35.0% | |
| ATGCCATGTAAATTACTTGC+TGG | - | chr3_3:54231951-54231970 | Msa0458490:intron | 35.0% | |
| TGCCATGTAAATTACTTGCT+GGG | - | chr3_3:54231952-54231971 | Msa0458490:intron | 35.0% | |
| !! | GTTTTTCGATTCAAAAGTGG+TGG | + | chr3_3:54231982-54232001 | None:intergenic | 35.0% |
| GAATCGAAAAACCTAAGTGA+CGG | - | chr3_3:54231990-54232009 | Msa0458490:intron | 35.0% | |
| ! | AAATCTGAAGTGAAGAATCC+CGG | - | chr3_3:54232134-54232153 | Msa0458490:intron | 35.0% |
| ! | TCTTCTCTAATTTCAGGTGT+TGG | - | chr3_3:54232238-54232257 | Msa0458490:intron | 35.0% |
| GACATTGGTCAAAAAATGCA+TGG | - | chr3_3:54232351-54232370 | Msa0458490:intron | 35.0% | |
| ! | CAGGAAAGGTTCTGATATTA+AGG | + | chr3_3:54232384-54232403 | None:intergenic | 35.0% |
| GATACCATTAATCTCCCTTT+GGG | + | chr3_3:54232430-54232449 | None:intergenic | 35.0% | |
| TGATACCATTAATCTCCCTT+TGG | + | chr3_3:54232431-54232450 | None:intergenic | 35.0% | |
| !! | TTTGCCTACTGTTTTGTTAG+AGG | - | chr3_3:54232606-54232625 | Msa0458490:intron | 35.0% |
| ATGTCCTCTAACAAAACAGT+AGG | + | chr3_3:54232613-54232632 | None:intergenic | 35.0% | |
| ! | TTGTTGTCTTATGTTTCTGC+TGG | - | chr3_3:54232637-54232656 | Msa0458490:intron | 35.0% |
| ! | TCTTCATCTTTTCGTTGTTG+TGG | - | chr3_3:54232680-54232699 | Msa0458490:intron | 35.0% |
| ! | ATCTTTTCGTTGTTGTGGAA+TGG | - | chr3_3:54232685-54232704 | Msa0458490:intron | 35.0% |
| !! | GTAAAGGAAGGGTTTTTAGA+TGG | - | chr3_3:54232734-54232753 | Msa0458490:intron | 35.0% |
| TGGATGAGCACTATAACAAA+AGG | + | chr3_3:54232791-54232810 | None:intergenic | 35.0% | |
| TTGTAGAGAGTAGGAAGAAT+TGG | + | chr3_3:54232811-54232830 | None:intergenic | 35.0% | |
| TACTCTCTACAATTCGATGA+GGG | - | chr3_3:54232819-54232838 | Msa0458490:intron | 35.0% | |
| ATGAAGTAACTGAAACAGCT+CGG | + | chr3_3:54232872-54232891 | None:intergenic | 35.0% | |
| ! | CTCATTTTCATAAACTCTCC+AGG | - | chr3_3:54232967-54232986 | Msa0458490:intron | 35.0% |
| GTTGTTATCATAAGCTATCC+TGG | + | chr3_3:54232988-54233007 | None:intergenic | 35.0% | |
| !! | AGCTTTTTAGCATGCACTAT+TGG | - | chr3_3:54233149-54233168 | Msa0458490:intron | 35.0% |
| !! | GTTCTAGGGTACTTAATGTT+TGG | - | chr3_3:54233188-54233207 | Msa0458490:intron | 35.0% |
| GTAACATTAAACCTCCAAAC+AGG | - | chr3_3:54233230-54233249 | Msa0458490:intron | 35.0% | |
| TTGAACTCAACTTTCCTGTT+TGG | + | chr3_3:54233247-54233266 | None:intergenic | 35.0% | |
| CAACAAAAGGGTTACACATA+TGG | - | chr3_3:54233370-54233389 | Msa0458490:intron | 35.0% | |
| ! | GGATATCTTATGTCACTTGT+TGG | - | chr3_3:54233452-54233471 | Msa0458490:intron | 35.0% |
| TCAGGATCATACAAGAGATT+TGG | - | chr3_3:54233533-54233552 | Msa0458490:intron | 35.0% | |
| CAGGATCATACAAGAGATTT+GGG | - | chr3_3:54233534-54233553 | Msa0458490:intron | 35.0% | |
| TATAGAGAGAGTGGTGTAAT+GGG | - | chr3_3:54233684-54233703 | Msa0458490:CDS | 35.0% | |
| CAAAAGTGGTACTTCAATGG+AGG | + | chr3_3:54229942-54229961 | None:intergenic | 40.0% | |
| !! | CTCCATTGAAGTACCACTTT+TGG | - | chr3_3:54229940-54229959 | Msa0458490:three_prime_UTR | 40.0% |
| CCCCATTTGAATCATTCACT+TGG | + | chr3_3:54229982-54230001 | None:intergenic | 40.0% | |
| TAAAAGAGAGAGGGCAAGAA+AGG | + | chr3_3:54230101-54230120 | None:intergenic | 40.0% | |
| !! | AAGGGCACAAGTTGATTATG+AGG | + | chr3_3:54230127-54230146 | None:intergenic | 40.0% |
| TCATATCAATCACAAGGACG+AGG | + | chr3_3:54230299-54230318 | None:intergenic | 40.0% | |
| CGTCCTTGTGATTGATATGA+TGG | - | chr3_3:54230299-54230318 | Msa0458490:CDS | 40.0% | |
| ACTAACAAAATGGGCACCAT+TGG | + | chr3_3:54231637-54231656 | None:intergenic | 40.0% | |
| TGCCCAGCAAGTAATTTACA+TGG | + | chr3_3:54231957-54231976 | None:intergenic | 40.0% | |
| !!! | AGTTTTTTGGACCGTCACTT+AGG | + | chr3_3:54232004-54232023 | None:intergenic | 40.0% |
| GTTTCACTAGCTCACGAAAT+TGG | + | chr3_3:54232045-54232064 | None:intergenic | 40.0% | |
| !! | GGTAATCAGTTGGTAATGCA+GGG | + | chr3_3:54232190-54232209 | None:intergenic | 40.0% |
| !! | TGGTAATCAGTTGGTAATGC+AGG | + | chr3_3:54232191-54232210 | None:intergenic | 40.0% |
| ATACCTTATGCACTAGCATC+TGG | - | chr3_3:54232271-54232290 | Msa0458490:intron | 40.0% | |
| CCATAGCATGTTGTTACACA+GGG | - | chr3_3:54232329-54232348 | Msa0458490:intron | 40.0% | |
| ATGTTGTTACACAGGGACAT+TGG | - | chr3_3:54232336-54232355 | Msa0458490:intron | 40.0% | |
| GGTCAAAAAATGCATGGACA+TGG | - | chr3_3:54232357-54232376 | Msa0458490:intron | 40.0% | |
| ATCAGAACCTTTCCTGACAT+AGG | - | chr3_3:54232388-54232407 | Msa0458490:intron | 40.0% | |
| ATGTTGACCTATGTCAGGAA+AGG | + | chr3_3:54232398-54232417 | None:intergenic | 40.0% | |
| AATGCATGTTGACCTATGTC+AGG | + | chr3_3:54232403-54232422 | None:intergenic | 40.0% | |
| GACATAGGTCAACATGCATT+CGG | - | chr3_3:54232403-54232422 | Msa0458490:intron | 40.0% | |
| !! | GAACTCTATCTTGCTGTTAC+CGG | - | chr3_3:54232466-54232485 | Msa0458490:intron | 40.0% |
| !! | CGTTCGGTACTAGTTTGTTA+AGG | + | chr3_3:54232516-54232535 | None:intergenic | 40.0% |
| CACCTAGCAGGATTAACAAT+TGG | - | chr3_3:54232544-54232563 | Msa0458490:intron | 40.0% | |
| CACCAATTGTTAATCCTGCT+AGG | + | chr3_3:54232549-54232568 | None:intergenic | 40.0% | |
| CTAGCAGGATTAACAATTGG+TGG | - | chr3_3:54232547-54232566 | Msa0458490:intron | 40.0% | |
| ! | TTGTCTTATGTTTCTGCTGG+TGG | - | chr3_3:54232640-54232659 | Msa0458490:intron | 40.0% |
| TTGTGGAATGGTGCAATTGA+TGG | - | chr3_3:54232697-54232716 | Msa0458490:intron | 40.0% | |
| AATGGTGCAATTGATGGAAC+AGG | - | chr3_3:54232703-54232722 | Msa0458490:intron | 40.0% | |
| ATGGTGCAATTGATGGAACA+GGG | - | chr3_3:54232704-54232723 | Msa0458490:intron | 40.0% | |
| ATTGATGGAACAGGGTTTCA+TGG | - | chr3_3:54232712-54232731 | Msa0458490:intron | 40.0% | |
| AGGGTTTCATGGTAAAGGAA+GGG | - | chr3_3:54232723-54232742 | Msa0458490:intron | 40.0% | |
| GCATACAAACTAACAGCAGA+AGG | + | chr3_3:54232769-54232788 | None:intergenic | 40.0% | |
| CTCATCGAATTGTAGAGAGT+AGG | + | chr3_3:54232820-54232839 | None:intergenic | 40.0% | |
| CTACTCTCTACAATTCGATG+AGG | - | chr3_3:54232818-54232837 | Msa0458490:intron | 40.0% | |
| ! | TGGAGAACAAGTTGAATCAC+AGG | - | chr3_3:54233208-54233227 | Msa0458490:intron | 40.0% |
| AACTCAACTTTCCTGTTTGG+AGG | + | chr3_3:54233244-54233263 | None:intergenic | 40.0% | |
| AGGAAAGTTGAGTTCAAGAG+TGG | - | chr3_3:54233250-54233269 | Msa0458490:intron | 40.0% | |
| CAAGAGATTTGGGTGTGAAA+TGG | - | chr3_3:54233544-54233563 | Msa0458490:CDS | 40.0% | |
| ! | TTTTCCTCCTATAGAGAGAG+TGG | - | chr3_3:54233675-54233694 | Msa0458490:CDS | 40.0% |
| CATTACACCACTCTCTCTAT+AGG | + | chr3_3:54233685-54233704 | None:intergenic | 40.0% | |
| CTATAGAGAGAGTGGTGTAA+TGG | - | chr3_3:54233683-54233702 | Msa0458490:CDS | 40.0% | |
| ATCTTCTCGAGTGTACTCCA+TGG | - | chr3_3:54229892-54229911 | Msa0458490:three_prime_UTR | 45.0% | |
| AATGCATGTGGCACATGTGT+TGG | + | chr3_3:54230503-54230522 | None:intergenic | 45.0% | |
| AGGGAATATGCCAAGACTGA+TGG | - | chr3_3:54230833-54230852 | Msa0458490:CDS | 45.0% | |
| GCCATAGCATGTTGTTACAC+AGG | - | chr3_3:54232328-54232347 | Msa0458490:intron | 45.0% | |
| CCCTGTGTAACAACATGCTA+TGG | + | chr3_3:54232332-54232351 | None:intergenic | 45.0% | |
| AACATGCATTCGGACCCAAA+GGG | - | chr3_3:54232413-54232432 | Msa0458490:intron | 45.0% | |
| GCTAGGTGAATTTGCACGTT+CGG | + | chr3_3:54232532-54232551 | None:intergenic | 45.0% | |
| AACGTGCAAATTCACCTAGC+AGG | - | chr3_3:54232532-54232551 | Msa0458490:intron | 45.0% | |
| GGAACAGGGTTTCATGGTAA+AGG | - | chr3_3:54232718-54232737 | Msa0458490:intron | 45.0% | |
| CAGGGTTTCATGGTAAAGGA+AGG | - | chr3_3:54232722-54232741 | Msa0458490:intron | 45.0% | |
| !! | GGAAGGGTTTTTAGATGGAG+TGG | - | chr3_3:54232739-54232758 | Msa0458490:intron | 45.0% |
| ACGGAAACGGCTTAGTTACA+CGG | + | chr3_3:54233106-54233125 | None:intergenic | 45.0% | |
| ! | CTAAGCCGTTTCCGTTGTTT+TGG | - | chr3_3:54233111-54233130 | Msa0458490:intron | 45.0% |
| ACCTGCCAAAACAACGGAAA+CGG | + | chr3_3:54233119-54233138 | None:intergenic | 45.0% | |
| GATAGGACCTGCCAAAACAA+CGG | + | chr3_3:54233125-54233144 | None:intergenic | 45.0% | |
| GCTGTGACCATTCCCTTATT+TGG | - | chr3_3:54233431-54233450 | Msa0458490:intron | 45.0% | |
| !!! | GGGGTTGCTATTGCTGTTTT+TGG | - | chr3_3:54233593-54233612 | Msa0458490:CDS | 45.0% |
| TACACCACTCTCTCTATAGG+AGG | + | chr3_3:54233682-54233701 | None:intergenic | 45.0% | |
| !!! | TTTTATTTTATAAATATGAT+TGG | - | chr3_3:54230794-54230813 | Msa0458490:CDS | 5.0% |
| TGGACACTCACCATCAGTCT+TGG | + | chr3_3:54230846-54230865 | None:intergenic | 50.0% | |
| CACGTATTATGGGAAGGCTC+TGG | + | chr3_3:54230866-54230885 | None:intergenic | 50.0% | |
| TGCAGGGACGTTGATATGCA+GGG | + | chr3_3:54232174-54232193 | None:intergenic | 50.0% | |
| ATGCAGGGACGTTGATATGC+AGG | + | chr3_3:54232175-54232194 | None:intergenic | 50.0% | |
| CCTCCAGATGCTAGTGCATA+AGG | + | chr3_3:54232277-54232296 | None:intergenic | 50.0% | |
| CCTTATGCACTAGCATCTGG+AGG | - | chr3_3:54232274-54232293 | Msa0458490:intron | 50.0% | |
| ATGCACTAGCATCTGGAGGA+TGG | - | chr3_3:54232278-54232297 | Msa0458490:intron | 50.0% | |
| CAACATGCATTCGGACCCAA+AGG | - | chr3_3:54232412-54232431 | Msa0458490:intron | 50.0% | |
| CGGACCCAAAGGGAGATTAA+TGG | - | chr3_3:54232423-54232442 | Msa0458490:intron | 50.0% | |
| TATGCAGCAGCAGCAGTTCT+AGG | - | chr3_3:54233173-54233192 | Msa0458490:intron | 50.0% | |
| ATGCAGCAGCAGCAGTTCTA+GGG | - | chr3_3:54233174-54233193 | Msa0458490:intron | 50.0% | |
| TACTCCATGGCTGCTGAGCA+AGG | - | chr3_3:54229905-54229924 | Msa0458490:three_prime_UTR | 55.0% | |
| ATCACCTTGCTCAGCAGCCA+TGG | + | chr3_3:54229912-54229931 | None:intergenic | 55.0% | |
| AGGGGTCTGAGTTCGAATCC+GGG | + | chr3_3:54232155-54232174 | None:intergenic | 55.0% | |
| CAGGGGTCTGAGTTCGAATC+CGG | + | chr3_3:54232156-54232175 | None:intergenic | 55.0% | |
| GCAGGGACGTTGATATGCAG+GGG | + | chr3_3:54232173-54232192 | None:intergenic | 55.0% | |
| !!! | GCCGTTTCCGTTGTTTTGGC+AGG | - | chr3_3:54233115-54233134 | Msa0458490:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 54229877 | 54233754 | 54229877 | ID=Msa0458490;Name=Msa0458490 |
| chr3_3 | mRNA | 54229877 | 54233754 | 54229877 | ID=Msa0458490-mRNA-1;Parent=Msa0458490;Name=Msa0458490-mRNA-1;_AED=0.01;_eAED=0.01;_QI=34|1|1|1|1|1|3|99|436 |
| chr3_3 | exon | 54229877 | 54230494 | 54229877 | ID=Msa0458490-mRNA-1:exon:10664;Parent=Msa0458490-mRNA-1 |
| chr3_3 | exon | 54230770 | 54231377 | 54230770 | ID=Msa0458490-mRNA-1:exon:10663;Parent=Msa0458490-mRNA-1 |
| chr3_3 | exon | 54233537 | 54233754 | 54233537 | ID=Msa0458490-mRNA-1:exon:10662;Parent=Msa0458490-mRNA-1 |
| chr3_3 | five_prime_UTR | 54233721 | 54233754 | 54233721 | ID=Msa0458490-mRNA-1:five_prime_utr;Parent=Msa0458490-mRNA-1 |
| chr3_3 | CDS | 54233537 | 54233720 | 54233537 | ID=Msa0458490-mRNA-1:cds;Parent=Msa0458490-mRNA-1 |
| chr3_3 | CDS | 54230770 | 54231377 | 54230770 | ID=Msa0458490-mRNA-1:cds;Parent=Msa0458490-mRNA-1 |
| chr3_3 | CDS | 54229976 | 54230494 | 54229976 | ID=Msa0458490-mRNA-1:cds;Parent=Msa0458490-mRNA-1 |
| chr3_3 | three_prime_UTR | 54229877 | 54229975 | 54229877 | ID=Msa0458490-mRNA-1:three_prime_utr;Parent=Msa0458490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
