Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451150 | XP_003599789.2 | 81.944 | 144 | 9 | 2 | 30 | 156 | 107 | 250 | 2.08e-62 | 202 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451150 | sp|O80854|B561L_ARATH | 45.736 | 129 | 53 | 2 | 30 | 141 | 101 | 229 | 6.09e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451150 | G7IXF4 | 81.944 | 144 | 9 | 2 | 30 | 156 | 107 | 250 | 9.94e-63 | 202 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0033880 | Msa0451150 | 0.813592 | 2.367044e-51 | -8.615850e-47 |
| Msa0048180 | Msa0451150 | 0.805835 | 1.101994e-49 | -8.615850e-47 |
| Msa0115370 | Msa0451150 | 0.806774 | 6.986537e-50 | -8.615850e-47 |
| Msa0127850 | Msa0451150 | 0.832837 | 7.527681e-56 | -8.615850e-47 |
| Msa0142410 | Msa0451150 | 0.806366 | 8.516500e-50 | -8.615850e-47 |
| Msa0174000 | Msa0451150 | 0.808854 | 2.524262e-50 | -8.615850e-47 |
| Msa0178120 | Msa0451150 | 0.802083 | 6.637329e-49 | -8.615850e-47 |
| Msa0405650 | Msa0451150 | 0.857962 | 1.141459e-62 | -8.615850e-47 |
| Msa0451150 | Msa0458490 | 0.802721 | 4.905417e-49 | -8.615850e-47 |
| Msa0451150 | Msa0498560 | 0.866058 | 3.762471e-65 | -8.615850e-47 |
| Msa0451150 | Msa0547990 | 0.805264 | 1.451482e-49 | -8.615850e-47 |
| Msa0451150 | Msa0593700 | 0.810282 | 1.245602e-50 | -8.615850e-47 |
| Msa0451150 | Msa0633570 | 0.807195 | 5.690079e-50 | -8.615850e-47 |
| Msa0451150 | Msa0644030 | 0.800887 | 1.167069e-48 | -8.615850e-47 |
| Msa0451150 | Msa0666230 | 0.819353 | 1.214374e-52 | -8.615850e-47 |
| Msa0451150 | Msa0943170 | 0.803729 | 3.033610e-49 | -8.615850e-47 |
| Msa0451150 | Msa0963020 | 0.817781 | 2.759311e-52 | -8.615850e-47 |
| Msa0451150 | Msa1127540 | 0.809724 | 1.642896e-50 | -8.615850e-47 |
| Msa0451150 | Msa1201830 | 0.805758 | 1.143728e-49 | -8.615850e-47 |
| Msa0451150 | Msa1227690 | 0.809128 | 2.205623e-50 | -8.615850e-47 |
| Msa0451150 | Msa1235250 | 0.804152 | 2.477340e-49 | -8.615850e-47 |
| Msa0451150 | Msa1356610 | 0.820334 | 7.246554e-53 | -8.615850e-47 |
| Msa0451150 | Msa1391480 | 0.804801 | 1.814627e-49 | -8.615850e-47 |
| Msa0451150 | Msa1398790 | 0.800396 | 1.469566e-48 | -8.615850e-47 |
| Msa0451150 | Msa1403570 | 0.825445 | 4.668587e-54 | -8.615850e-47 |
| Msa0451150 | Msa1432480 | 0.820359 | 7.150654e-53 | -8.615850e-47 |
| Msa0451150 | Msa1462910 | 0.803524 | 3.345747e-49 | -8.615850e-47 |
| Msa0249540 | Msa0451150 | 0.815135 | 1.079463e-51 | -8.615850e-47 |
| Msa0270210 | Msa0451150 | 0.820266 | 7.511880e-53 | -8.615850e-47 |
| Msa0296250 | Msa0451150 | 0.815155 | 1.068573e-51 | -8.615850e-47 |
| Msa0332640 | Msa0451150 | 0.803622 | 3.192151e-49 | -8.615850e-47 |
| Msa0358670 | Msa0451150 | 0.803423 | 3.510606e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451150 | MtrunA17_Chr3g0096101 | 81.944 | 144 | 9 | 2 | 30 | 156 | 107 | 250 | 1.91e-66 | 202 |
| Msa0451150 | MtrunA17_Chr3g0096101 | 57.377 | 61 | 21 | 1 | 1 | 61 | 1 | 56 | 3.46e-13 | 65.1 |
| Msa0451150 | MtrunA17_Chr4g0052201 | 39.506 | 162 | 65 | 5 | 22 | 150 | 92 | 253 | 2.95e-29 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0451150 | AT2G30890.1 | 45.736 | 129 | 53 | 2 | 30 | 141 | 101 | 229 | 6.19e-33 | 117 |
| Msa0451150 | AT4G18260.1 | 45.312 | 128 | 51 | 2 | 30 | 138 | 109 | 236 | 6.50e-32 | 115 |
Find 24 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGATTAGGGGTTGCACTTTA+TGG | 0.214906 | 3_3:+38593614 | Msa0451150:CDS |
| CATCAAAAGGCATAAGAATT+TGG | 0.238501 | 3_3:+38594290 | Msa0451150:CDS |
| ACAATAATCATCAAAGATTA+GGG | 0.240819 | 3_3:+38593600 | Msa0451150:CDS |
| GAACCATACACTTCTTCTTT+TGG | 0.257377 | 3_3:-38594182 | None:intergenic |
| TTGCACTTTATGGTGTTATC+TGG | 0.283526 | 3_3:+38593624 | Msa0451150:CDS |
| AAGAAATGAACTTTGTTTGC+TGG | 0.323312 | 3_3:-38591996 | None:intergenic |
| AACAATAATCATCAAAGATT+AGG | 0.323426 | 3_3:+38593599 | Msa0451150:CDS |
| GGTGTTCTAAATGTATATAT+TGG | 0.364743 | 3_3:+38594244 | Msa0451150:CDS |
| TGGAACTGCAGTAACATTCT+TGG | 0.365502 | 3_3:+38594222 | Msa0451150:intron |
| TTGAAGGCTGGCACTTGTTA+AGG | 0.371264 | 3_3:+38594445 | Msa0451150:CDS |
| GGAACTGCAGTAACATTCTT+GGG | 0.440614 | 3_3:+38594223 | Msa0451150:intron |
| TGAAAAGGAGATGGTATTGA+AGG | 0.474466 | 3_3:+38594429 | Msa0451150:CDS |
| AGAAAGTCTTCCAAATGAAA+AGG | 0.491408 | 3_3:+38594414 | Msa0451150:CDS |
| AGATCATATGAAAGACATGA+TGG | 0.510970 | 3_3:+38591969 | None:intergenic |
| AAACAAGACATGCTTGAAAG+AGG | 0.517737 | 3_3:-38592020 | None:intergenic |
| GCTGTACTTCTTGCAACAGC+AGG | 0.522233 | 3_3:+38593539 | Msa0451150:CDS |
| GATCCAAAAGAAGAAGTGTA+TGG | 0.524463 | 3_3:+38594179 | Msa0451150:CDS |
| ATCTGGCTGCAAGTCCTAGT+TGG | 0.526574 | 3_3:+38593641 | Msa0451150:CDS |
| TTTGATGATTATTGTTGAAG+AGG | 0.545214 | 3_3:-38593592 | None:intergenic |
| AAGGAGATGGTATTGAAGGC+TGG | 0.554773 | 3_3:+38594433 | Msa0451150:CDS |
| TCTTCCAAATGAAAAGGAGA+TGG | 0.597072 | 3_3:+38594420 | Msa0451150:CDS |
| GATCATATGAAAGACATGAT+GGG | 0.603054 | 3_3:+38591970 | None:intergenic |
| GTGGTCGAATGATACCAACT+AGG | 0.678006 | 3_3:-38593655 | None:intergenic |
| CAATAATCATCAAAGATTAG+GGG | 0.720596 | 3_3:+38593601 | Msa0451150:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAATATTTAAATATAAT+TGG | - | chr3_3:38592651-38592670 | None:intergenic | 0.0% |
| !!! | TATTAATTTAACACTTATTT+TGG | - | chr3_3:38592683-38592702 | None:intergenic | 10.0% |
| !!! | TTAAATAATAATCTTTTTGA+TGG | + | chr3_3:38593243-38593262 | Msa0451150:intron | 10.0% |
| !! | TTCTTAATGAAAAAAAATTG+AGG | - | chr3_3:38592315-38592334 | None:intergenic | 15.0% |
| !! | GAATAAATTAACTAAAAATG+TGG | - | chr3_3:38593126-38593145 | None:intergenic | 15.0% |
| !! | AATTATAATCTTTGTCAAAA+AGG | - | chr3_3:38593194-38593213 | None:intergenic | 15.0% |
| !!! | AGTTTGTCTTTTTAATATCA+AGG | + | chr3_3:38592213-38592232 | Msa0451150:intron | 20.0% |
| !!! | GTTTGTCTTTTTAATATCAA+GGG | + | chr3_3:38592214-38592233 | Msa0451150:intron | 20.0% |
| !! | TAATGAAAAAAAATTGAGGA+AGG | - | chr3_3:38592311-38592330 | None:intergenic | 20.0% |
| !!! | CAATTTGAAATTACATTACA+TGG | + | chr3_3:38592396-38592415 | Msa0451150:intron | 20.0% |
| !! | AATTAGATTATCAAATAGAG+AGG | + | chr3_3:38592470-38592489 | Msa0451150:intron | 20.0% |
| !!! | GAATTTATTTTGTATTCTGT+TGG | + | chr3_3:38592600-38592619 | Msa0451150:intron | 20.0% |
| !!! | ACTAAAGTATAAAGTATCTT+AGG | + | chr3_3:38592899-38592918 | Msa0451150:intron | 20.0% |
| !! | TACATAAATAGGTCAATTAA+AGG | - | chr3_3:38592950-38592969 | None:intergenic | 20.0% |
| !! | AAATATTGATAGATCCAAAT+GGG | - | chr3_3:38593014-38593033 | None:intergenic | 20.0% |
| !! | AAAATATTGATAGATCCAAA+TGG | - | chr3_3:38593015-38593034 | None:intergenic | 20.0% |
| !! | TTACTAATAAGATCATGTAA+TGG | + | chr3_3:38593159-38593178 | Msa0451150:intron | 20.0% |
| !! | AGATTATAATTGATACTTTG+AGG | + | chr3_3:38593203-38593222 | Msa0451150:intron | 20.0% |
| !! | AACAATAATCATCAAAGATT+AGG | + | chr3_3:38593599-38593618 | Msa0451150:CDS | 20.0% |
| !! | ACAATAATCATCAAAGATTA+GGG | + | chr3_3:38593600-38593619 | Msa0451150:CDS | 20.0% |
| !!! | AAAACATAATTTTTGTCGTT+AGG | + | chr3_3:38594045-38594064 | Msa0451150:intron | 20.0% |
| ! | TCAAATTTGATACCTTAATG+TGG | - | chr3_3:38592122-38592141 | None:intergenic | 25.0% |
| ! | ATCTTCCATATTGAAGATTA+AGG | - | chr3_3:38592162-38592181 | None:intergenic | 25.0% |
| ! | GTAATTTCAAATTGAAGTCT+TGG | - | chr3_3:38592390-38592409 | None:intergenic | 25.0% |
| !! | CTATGTTCATACAATTTTTC+AGG | + | chr3_3:38592521-38592540 | Msa0451150:intron | 25.0% |
| !! | CACTGCTTTATTACATAAAT+AGG | - | chr3_3:38592961-38592980 | None:intergenic | 25.0% |
| ! | CTATTTATGTAATAAAGCAG+TGG | + | chr3_3:38592959-38592978 | Msa0451150:intron | 25.0% |
| ! | AATATTGATAGATCCAAATG+GGG | - | chr3_3:38593013-38593032 | None:intergenic | 25.0% |
| !!! | CATTGGTTAACTTTTAATGA+TGG | + | chr3_3:38593063-38593082 | Msa0451150:intron | 25.0% |
| ! | TATTAGTAACTAACAAGCTT+TGG | - | chr3_3:38593148-38593167 | None:intergenic | 25.0% |
| !!! | TCTTTTTGATGGTAATATGA+AGG | + | chr3_3:38593254-38593273 | Msa0451150:intron | 25.0% |
| !!! | TTTTGAGTTTCTGTTAAAAC+AGG | + | chr3_3:38593511-38593530 | Msa0451150:intron | 25.0% |
| !! | TTTGATGATTATTGTTGAAG+AGG | - | chr3_3:38593595-38593614 | None:intergenic | 25.0% |
| ! | CAATAATCATCAAAGATTAG+GGG | + | chr3_3:38593601-38593620 | Msa0451150:CDS | 25.0% |
| !! | ATTTAAATGTTTTACCTTCG+TGG | - | chr3_3:38593677-38593696 | None:intergenic | 25.0% |
| !!! | TTTTTGTTGTCTTAAACCTT+CGG | - | chr3_3:38594027-38594046 | None:intergenic | 25.0% |
| ! | GATTTCAATGGTATAAGATT+GGG | - | chr3_3:38594091-38594110 | None:intergenic | 25.0% |
| ! | TGATTTCAATGGTATAAGAT+TGG | - | chr3_3:38594092-38594111 | None:intergenic | 25.0% |
| !! | AGTTTCGAATATCTTTTCAA+TGG | - | chr3_3:38594134-38594153 | None:intergenic | 25.0% |
| !! | ATCTTTATTTACTTGTTCAC+AGG | + | chr3_3:38594155-38594174 | Msa0451150:intron | 25.0% |
| !! | TCTTTATTTACTTGTTCACA+GGG | + | chr3_3:38594156-38594175 | Msa0451150:intron | 25.0% |
| !! | GGTGTTCTAAATGTATATAT+TGG | + | chr3_3:38594244-38594263 | Msa0451150:CDS | 25.0% |
| ! | TACCATGAAAAAACATCAAA+AGG | + | chr3_3:38594277-38594296 | Msa0451150:CDS | 25.0% |
| !!! | TCTACCTTTTTCAAGAAAAA+TGG | + | chr3_3:38594353-38594372 | Msa0451150:CDS | 25.0% |
| !!! | CTACCTTTTTCAAGAAAAAT+GGG | + | chr3_3:38594354-38594373 | Msa0451150:CDS | 25.0% |
| ! | AAGAAATGAACTTTGTTTGC+TGG | - | chr3_3:38591999-38592018 | None:intergenic | 30.0% |
| ! | CAAGAGCAAAAGGAAATTTT+AGG | + | chr3_3:38592072-38592091 | Msa0451150:intron | 30.0% |
| AAACAATGACAACCACATTA+AGG | + | chr3_3:38592107-38592126 | Msa0451150:intron | 30.0% | |
| TCTTGCCTTAATCTTCAATA+TGG | + | chr3_3:38592154-38592173 | Msa0451150:intron | 30.0% | |
| AAAGACAAACTCTTAGCTAT+AGG | - | chr3_3:38592204-38592223 | None:intergenic | 30.0% | |
| CTAATTGCAAGTATACCAAT+AGG | - | chr3_3:38592456-38592475 | None:intergenic | 30.0% | |
| AATAAAATTCTAAGCCACCT+TGG | - | chr3_3:38592501-38592520 | None:intergenic | 30.0% | |
| TATCTTAGGTAGATATTCTG+TGG | + | chr3_3:38592913-38592932 | Msa0451150:intron | 30.0% | |
| ATTAAGATCAGTTGTCACAT+TGG | + | chr3_3:38593046-38593065 | Msa0451150:intron | 30.0% | |
| ! | AACTTTTAATGATGGCATGA+AGG | + | chr3_3:38593071-38593090 | Msa0451150:intron | 30.0% |
| ! | ACTTTTAATGATGGCATGAA+GGG | + | chr3_3:38593072-38593091 | Msa0451150:intron | 30.0% |
| CTAAATGTAACCACATATGT+CGG | + | chr3_3:38593360-38593379 | Msa0451150:intron | 30.0% | |
| GTTTCATAGACATAAATGGT+GGG | - | chr3_3:38593787-38593806 | None:intergenic | 30.0% | |
| CTTGGTTTCATAGACATAAA+TGG | - | chr3_3:38593791-38593810 | None:intergenic | 30.0% | |
| !! | TTTCTAAGACTAACCTACAT+AGG | + | chr3_3:38593916-38593935 | Msa0451150:intron | 30.0% |
| ! | TATCTTTTCAATGGTCTACA+TGG | - | chr3_3:38594125-38594144 | None:intergenic | 30.0% |
| ! | CTTTATTTACTTGTTCACAG+GGG | + | chr3_3:38594157-38594176 | Msa0451150:intron | 30.0% |
| !!! | TGCCTTTTGATGTTTTTTCA+TGG | - | chr3_3:38594282-38594301 | None:intergenic | 30.0% |
| ! | CATCAAAAGGCATAAGAATT+TGG | + | chr3_3:38594290-38594309 | Msa0451150:CDS | 30.0% |
| !! | AGACCCATTTTTCTTGAAAA+AGG | - | chr3_3:38594360-38594379 | None:intergenic | 30.0% |
| CTACATACAAAAACAAAGAG+TGG | + | chr3_3:38594378-38594397 | Msa0451150:CDS | 30.0% | |
| AGAAAGTCTTCCAAATGAAA+AGG | + | chr3_3:38594414-38594433 | Msa0451150:CDS | 30.0% | |
| ! | AATACCATCTCCTTTTCATT+TGG | - | chr3_3:38594427-38594446 | None:intergenic | 30.0% |
| AAACAAGACATGCTTGAAAG+AGG | - | chr3_3:38592023-38592042 | None:intergenic | 35.0% | |
| TCTTGTGATGAACTAACAAG+TGG | - | chr3_3:38592057-38592076 | None:intergenic | 35.0% | |
| TAGTTCATCACAAGAGCAAA+AGG | + | chr3_3:38592062-38592081 | Msa0451150:intron | 35.0% | |
| ATTACATGGCTTTCTCCTTT+GGG | + | chr3_3:38592410-38592429 | Msa0451150:intron | 35.0% | |
| GATTGTCTTGTCACATAGAT+AGG | - | chr3_3:38592748-38592767 | None:intergenic | 35.0% | |
| ! | TAAAGCAGTGGTGAAAGTTT+TGG | + | chr3_3:38592971-38592990 | Msa0451150:intron | 35.0% |
| !! | AATTTTCTTGCTGTCTTCAC+AGG | - | chr3_3:38593308-38593327 | None:intergenic | 35.0% |
| TGAGTTTCTGTTAAAACAGG+CGG | + | chr3_3:38593514-38593533 | Msa0451150:intron | 35.0% | |
| !! | TTGCACTTTATGGTGTTATC+TGG | + | chr3_3:38593624-38593643 | Msa0451150:CDS | 35.0% |
| GTGAGCATTTCTCAACAAAA+GGG | - | chr3_3:38593701-38593720 | None:intergenic | 35.0% | |
| AGTGAGCATTTCTCAACAAA+AGG | - | chr3_3:38593702-38593721 | None:intergenic | 35.0% | |
| ! | TGCTATCAGGTTTTCGTTAT+CGG | + | chr3_3:38593757-38593776 | Msa0451150:intron | 35.0% |
| GGTTTCATAGACATAAATGG+TGG | - | chr3_3:38593788-38593807 | None:intergenic | 35.0% | |
| !! | ACCTTACAAGCCGATTTTAT+GGG | + | chr3_3:38593871-38593890 | Msa0451150:intron | 35.0% |
| CTAACACAACCCCATAAAAT+CGG | - | chr3_3:38593884-38593903 | None:intergenic | 35.0% | |
| !! | TAGGTTAGTCTTAGAAATCG+TGG | - | chr3_3:38593913-38593932 | None:intergenic | 35.0% |
| ACTAACCTACATAGGTTTGT+CGG | + | chr3_3:38593924-38593943 | Msa0451150:intron | 35.0% | |
| TTATGATATAGTCCGGAGTT+CGG | - | chr3_3:38593988-38594007 | None:intergenic | 35.0% | |
| GAAGGGATTATGATATAGTC+CGG | - | chr3_3:38593995-38594014 | None:intergenic | 35.0% | |
| TGGTATAAGATTGGGATTTC+AGG | - | chr3_3:38594083-38594102 | None:intergenic | 35.0% | |
| ! | GATCCAAAAGAAGAAGTGTA+TGG | + | chr3_3:38594179-38594198 | Msa0451150:CDS | 35.0% |
| ! | GAACCATACACTTCTTCTTT+TGG | - | chr3_3:38594185-38594204 | None:intergenic | 35.0% |
| TTCTTTGCACATTGGATACT+TGG | + | chr3_3:38594202-38594221 | Msa0451150:intron | 35.0% | |
| TCTTCCAAATGAAAAGGAGA+TGG | + | chr3_3:38594420-38594439 | Msa0451150:CDS | 35.0% | |
| ! | TGAAAAGGAGATGGTATTGA+AGG | + | chr3_3:38594429-38594448 | Msa0451150:CDS | 35.0% |
| CATTACATGGCTTTCTCCTT+TGG | + | chr3_3:38592409-38592428 | Msa0451150:intron | 40.0% | |
| TTTCTCCTTTGGGCTTCAAT+GGG | + | chr3_3:38592420-38592439 | Msa0451150:intron | 40.0% | |
| ATGGGATTCTTGATGCCTAT+TGG | + | chr3_3:38592438-38592457 | Msa0451150:intron | 40.0% | |
| CAAATAGAGAGGAGAATCCA+AGG | + | chr3_3:38592481-38592500 | Msa0451150:intron | 40.0% | |
| !! | GTGGTGAAAGTTTTGGTAGA+TGG | + | chr3_3:38592978-38592997 | Msa0451150:intron | 40.0% |
| !! | GTTTTGGTAGATGGTTACTC+TGG | + | chr3_3:38592987-38593006 | Msa0451150:intron | 40.0% |
| AGATTAGGGGTTGCACTTTA+TGG | + | chr3_3:38593614-38593633 | Msa0451150:CDS | 40.0% | |
| GATAACGAAAACCTGATAGC+AGG | - | chr3_3:38593758-38593777 | None:intergenic | 40.0% | |
| ! | TCATAGACATAAATGGTGGG+TGG | - | chr3_3:38593784-38593803 | None:intergenic | 40.0% |
| ACGACTAGCACTATTGAACT+TGG | - | chr3_3:38593809-38593828 | None:intergenic | 40.0% | |
| GTGTTAAAAAGTCCCACAAG+TGG | + | chr3_3:38593837-38593856 | Msa0451150:intron | 40.0% | |
| !! | TAAAATCGGCTTGTAAGGTG+AGG | - | chr3_3:38593870-38593889 | None:intergenic | 40.0% |
| !! | CACCTTACAAGCCGATTTTA+TGG | + | chr3_3:38593870-38593889 | Msa0451150:intron | 40.0% |
| !! | CCTTACAAGCCGATTTTATG+GGG | + | chr3_3:38593872-38593891 | Msa0451150:intron | 40.0% |
| TTCAACCGACAAACCTATGT+AGG | - | chr3_3:38593932-38593951 | None:intergenic | 40.0% | |
| TTCGGACGATAGGTAAGTAT+AGG | - | chr3_3:38593970-38593989 | None:intergenic | 40.0% | |
| GCAAGAAAGGGTGATTTCAA+TGG | - | chr3_3:38594103-38594122 | None:intergenic | 40.0% | |
| ATGGTCTACATGGCAAGAAA+GGG | - | chr3_3:38594115-38594134 | None:intergenic | 40.0% | |
| AATGGTCTACATGGCAAGAA+AGG | - | chr3_3:38594116-38594135 | None:intergenic | 40.0% | |
| GTGTATGGTTCTTTGCACAT+TGG | + | chr3_3:38594194-38594213 | Msa0451150:intron | 40.0% | |
| TGGAACTGCAGTAACATTCT+TGG | + | chr3_3:38594222-38594241 | Msa0451150:intron | 40.0% | |
| GGAACTGCAGTAACATTCTT+GGG | + | chr3_3:38594223-38594242 | Msa0451150:intron | 40.0% | |
| CTTTCTCCTTTGGGCTTCAA+TGG | + | chr3_3:38592419-38592438 | Msa0451150:intron | 45.0% | |
| AGAATCCCATTGAAGCCCAA+AGG | - | chr3_3:38592428-38592447 | None:intergenic | 45.0% | |
| ATAGAGAGGAGAATCCAAGG+TGG | + | chr3_3:38592484-38592503 | Msa0451150:intron | 45.0% | |
| ATGACACACACCGACATATG+TGG | - | chr3_3:38593373-38593392 | None:intergenic | 45.0% | |
| GTGGTCGAATGATACCAACT+AGG | - | chr3_3:38593658-38593677 | None:intergenic | 45.0% | |
| TTGGTATCATTCGACCACGA+AGG | + | chr3_3:38593660-38593679 | Msa0451150:intron | 45.0% | |
| TCATTCGATCACCTGCTATC+AGG | + | chr3_3:38593744-38593763 | Msa0451150:intron | 45.0% | |
| TGAGGATTGTCTCCACTTGT+GGG | - | chr3_3:38593852-38593871 | None:intergenic | 45.0% | |
| !! | CCCCATAAAATCGGCTTGTA+AGG | - | chr3_3:38593875-38593894 | None:intergenic | 45.0% |
| CTTAAACCTTCGGTTCTCAG+AGG | - | chr3_3:38594017-38594036 | None:intergenic | 45.0% | |
| ! | AAGGAGATGGTATTGAAGGC+TGG | + | chr3_3:38594433-38594452 | Msa0451150:CDS | 45.0% |
| ATGGTTACTCTGGCCCCATT+TGG | + | chr3_3:38592997-38593016 | Msa0451150:intron | 50.0% | |
| GCTGTACTTCTTGCAACAGC+AGG | + | chr3_3:38593539-38593558 | Msa0451150:CDS | 50.0% | |
| ATCTGGCTGCAAGTCCTAGT+TGG | + | chr3_3:38593641-38593660 | Msa0451150:CDS | 50.0% | |
| GTGAGGATTGTCTCCACTTG+TGG | - | chr3_3:38593853-38593872 | None:intergenic | 50.0% | |
| CTTACCTATCGTCCGAACTC+CGG | + | chr3_3:38593973-38593992 | Msa0451150:intron | 50.0% | |
| ACCTTCGGTTCTCAGAGGAA+GGG | - | chr3_3:38594012-38594031 | None:intergenic | 50.0% | |
| AACCTTCGGTTCTCAGAGGA+AGG | - | chr3_3:38594013-38594032 | None:intergenic | 50.0% | |
| TAGTCCGGAGTTCGGACGAT+AGG | - | chr3_3:38593980-38593999 | None:intergenic | 55.0% | |
| ! | TCCCTTCCTCTGAGAACCGA+AGG | + | chr3_3:38594008-38594027 | Msa0451150:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 38591976 | 38594465 | 38591976 | ID=Msa0451150;Name=Msa0451150 |
| chr3_3 | mRNA | 38591976 | 38594465 | 38591976 | ID=Msa0451150-mRNA-1;Parent=Msa0451150;Name=Msa0451150-mRNA-1;_AED=0.38;_eAED=0.41;_QI=0|0|0|1|0|0|4|0|156 |
| chr3_3 | exon | 38591976 | 38592059 | 38591976 | ID=Msa0451150-mRNA-1:exon:6932;Parent=Msa0451150-mRNA-1 |
| chr3_3 | exon | 38593533 | 38593662 | 38593533 | ID=Msa0451150-mRNA-1:exon:6933;Parent=Msa0451150-mRNA-1 |
| chr3_3 | exon | 38594177 | 38594200 | 38594177 | ID=Msa0451150-mRNA-1:exon:6934;Parent=Msa0451150-mRNA-1 |
| chr3_3 | exon | 38594233 | 38594465 | 38594233 | ID=Msa0451150-mRNA-1:exon:6935;Parent=Msa0451150-mRNA-1 |
| chr3_3 | CDS | 38591976 | 38592059 | 38591976 | ID=Msa0451150-mRNA-1:cds;Parent=Msa0451150-mRNA-1 |
| chr3_3 | CDS | 38593533 | 38593662 | 38593533 | ID=Msa0451150-mRNA-1:cds;Parent=Msa0451150-mRNA-1 |
| chr3_3 | CDS | 38594177 | 38594200 | 38594177 | ID=Msa0451150-mRNA-1:cds;Parent=Msa0451150-mRNA-1 |
| chr3_3 | CDS | 38594233 | 38594465 | 38594233 | ID=Msa0451150-mRNA-1:cds;Parent=Msa0451150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
