Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458680 | XP_003599327.1 | 96.591 | 176 | 5 | 1 | 1 | 175 | 1 | 176 | 8.21e-123 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458680 | sp|Q8LBW3|LBD12_ARATH | 63.351 | 191 | 54 | 2 | 2 | 176 | 3 | 193 | 6.44e-77 | 231 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458680 | G7J0R0 | 96.591 | 176 | 5 | 1 | 1 | 175 | 1 | 176 | 3.92e-123 | 353 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0458680 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0365720 | Msa0458680 | 0.816280 | 5.998612e-52 | -8.615850e-47 |
| Msa0413580 | Msa0458680 | 0.834394 | 3.074014e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458680 | MtrunA17_Chr3g0106101 | 96.591 | 176 | 5 | 1 | 1 | 175 | 1 | 176 | 7.56e-127 | 353 |
| Msa0458680 | MtrunA17_Chr5g0437571 | 67.241 | 174 | 40 | 6 | 1 | 173 | 1 | 158 | 2.27e-76 | 225 |
| Msa0458680 | MtrunA17_Chr3g0114061 | 67.949 | 156 | 38 | 2 | 2 | 157 | 3 | 146 | 1.77e-72 | 215 |
| Msa0458680 | MtrunA17_Chr2g0311601 | 70.536 | 112 | 33 | 0 | 6 | 117 | 12 | 123 | 8.65e-58 | 178 |
| Msa0458680 | MtrunA17_Chr4g0043421 | 65.833 | 120 | 41 | 0 | 3 | 122 | 11 | 130 | 8.70e-58 | 179 |
| Msa0458680 | MtrunA17_Chr4g0030001 | 64.545 | 110 | 38 | 1 | 6 | 114 | 23 | 132 | 3.31e-48 | 155 |
| Msa0458680 | MtrunA17_Chr1g0200201 | 66.355 | 107 | 36 | 0 | 8 | 114 | 73 | 179 | 4.54e-48 | 155 |
| Msa0458680 | MtrunA17_Chr4g0058651 | 65.385 | 104 | 36 | 0 | 5 | 108 | 9 | 112 | 1.84e-47 | 153 |
| Msa0458680 | MtrunA17_Chr3g0117121 | 65.094 | 106 | 37 | 0 | 3 | 108 | 6 | 111 | 3.98e-47 | 152 |
| Msa0458680 | MtrunA17_Chr6g0449641 | 57.522 | 113 | 48 | 0 | 5 | 117 | 7 | 119 | 2.36e-46 | 149 |
| Msa0458680 | MtrunA17_Chr7g0227511 | 61.538 | 104 | 40 | 0 | 5 | 108 | 9 | 112 | 1.16e-45 | 147 |
| Msa0458680 | MtrunA17_Chr6g0449651 | 51.538 | 130 | 59 | 1 | 2 | 131 | 62 | 187 | 3.21e-45 | 147 |
| Msa0458680 | MtrunA17_Chr5g0438091 | 57.258 | 124 | 48 | 1 | 5 | 128 | 37 | 155 | 5.12e-45 | 147 |
| Msa0458680 | MtrunA17_Chr3g0129071 | 62.385 | 109 | 41 | 0 | 6 | 114 | 46 | 154 | 1.12e-44 | 147 |
| Msa0458680 | MtrunA17_Chr3g0115431 | 60.577 | 104 | 41 | 0 | 4 | 107 | 6 | 109 | 3.46e-44 | 145 |
| Msa0458680 | MtrunA17_Chr5g0402611 | 61.905 | 105 | 40 | 0 | 3 | 107 | 4 | 108 | 1.04e-43 | 147 |
| Msa0458680 | MtrunA17_Chr5g0437401 | 61.538 | 104 | 40 | 0 | 4 | 107 | 8 | 111 | 9.31e-43 | 140 |
| Msa0458680 | MtrunA17_Chr3g0097221 | 57.009 | 107 | 46 | 0 | 1 | 107 | 1 | 107 | 1.95e-42 | 143 |
| Msa0458680 | MtrunA17_Chr3g0113891 | 62.000 | 100 | 38 | 0 | 5 | 104 | 12 | 111 | 1.23e-41 | 138 |
| Msa0458680 | MtrunA17_Chr8g0353981 | 63.551 | 107 | 39 | 0 | 1 | 107 | 1 | 107 | 2.58e-41 | 138 |
| Msa0458680 | MtrunA17_Chr5g0432451 | 55.200 | 125 | 54 | 1 | 6 | 128 | 42 | 166 | 5.31e-41 | 137 |
| Msa0458680 | MtrunA17_Chr7g0260971 | 57.009 | 107 | 44 | 2 | 2 | 107 | 10 | 115 | 2.12e-38 | 130 |
| Msa0458680 | MtrunA17_Chr1g0184281 | 51.724 | 116 | 55 | 1 | 3 | 117 | 11 | 126 | 9.08e-38 | 129 |
| Msa0458680 | MtrunA17_Chr5g0444351 | 41.007 | 139 | 79 | 1 | 8 | 143 | 6 | 144 | 1.09e-37 | 126 |
| Msa0458680 | MtrunA17_Chr8g0351721 | 52.033 | 123 | 56 | 2 | 4 | 125 | 15 | 135 | 1.08e-36 | 126 |
| Msa0458680 | MtrunA17_Chr7g0225111 | 51.961 | 102 | 49 | 0 | 6 | 107 | 4 | 105 | 1.34e-36 | 123 |
| Msa0458680 | MtrunA17_Chr8g0351701 | 53.398 | 103 | 47 | 1 | 6 | 107 | 22 | 124 | 6.72e-35 | 122 |
| Msa0458680 | MtrunA17_Chr7g0245871 | 55.882 | 102 | 44 | 1 | 7 | 107 | 27 | 128 | 9.24e-35 | 122 |
| Msa0458680 | MtrunA17_Chr6g0460951 | 50.962 | 104 | 50 | 1 | 6 | 108 | 39 | 142 | 2.88e-34 | 120 |
| Msa0458680 | MtrunA17_Chr7g0261031 | 45.860 | 157 | 69 | 6 | 2 | 147 | 4 | 155 | 2.98e-34 | 120 |
| Msa0458680 | MtrunA17_Chr1g0184271 | 42.000 | 150 | 79 | 3 | 7 | 150 | 12 | 159 | 3.89e-33 | 117 |
| Msa0458680 | MtrunA17_Chr5g0435641 | 46.281 | 121 | 58 | 3 | 2 | 121 | 3 | 117 | 2.26e-31 | 112 |
| Msa0458680 | MtrunA17_Chr8g0374591 | 43.564 | 101 | 57 | 0 | 7 | 107 | 8 | 108 | 5.63e-31 | 109 |
| Msa0458680 | MtrunA17_Chr8g0374601 | 46.535 | 101 | 54 | 0 | 7 | 107 | 26 | 126 | 9.69e-31 | 112 |
| Msa0458680 | MtrunA17_Chr7g0245861 | 54.839 | 93 | 39 | 2 | 4 | 93 | 9 | 101 | 7.19e-30 | 106 |
| Msa0458680 | MtrunA17_Chr8g0374581 | 46.602 | 103 | 54 | 1 | 7 | 108 | 8 | 110 | 1.32e-29 | 108 |
| Msa0458680 | MtrunA17_Chr6g0460941 | 47.872 | 94 | 48 | 1 | 1 | 93 | 1 | 94 | 7.86e-28 | 100 |
| Msa0458680 | MtrunA17_Chr4g0059901 | 45.455 | 99 | 54 | 0 | 2 | 100 | 5 | 103 | 4.58e-27 | 102 |
| Msa0458680 | MtrunA17_Chr6g0452691 | 38.095 | 126 | 75 | 2 | 8 | 130 | 10 | 135 | 7.45e-26 | 97.8 |
| Msa0458680 | MtrunA17_Chr6g0452661 | 42.553 | 94 | 53 | 1 | 8 | 100 | 10 | 103 | 2.78e-25 | 97.8 |
| Msa0458680 | MtrunA17_Chr6g0452671 | 39.394 | 99 | 60 | 0 | 2 | 100 | 6 | 104 | 7.66e-25 | 95.5 |
| Msa0458680 | MtrunA17_Chr2g0330201 | 39.806 | 103 | 62 | 0 | 5 | 107 | 17 | 119 | 6.13e-24 | 95.1 |
| Msa0458680 | MtrunA17_Chr4g0040831 | 32.738 | 168 | 102 | 4 | 8 | 172 | 16 | 175 | 1.17e-23 | 92.4 |
| Msa0458680 | MtrunA17_Chr8g0342351 | 39.000 | 100 | 61 | 0 | 8 | 107 | 13 | 112 | 1.70e-23 | 93.6 |
| Msa0458680 | MtrunA17_Chr4g0055441 | 42.105 | 95 | 50 | 2 | 8 | 97 | 3 | 97 | 1.04e-21 | 86.3 |
| Msa0458680 | MtrunA17_Chr2g0326051 | 60.317 | 63 | 25 | 0 | 52 | 114 | 5 | 67 | 1.96e-21 | 84.7 |
| Msa0458680 | MtrunA17_Chr5g0439111 | 30.719 | 153 | 101 | 2 | 8 | 159 | 10 | 158 | 9.34e-21 | 85.5 |
| Msa0458680 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 6 | 53 | 32 | 79 | 1.95e-19 | 78.2 |
| Msa0458680 | MtrunA17_Chr4g0046201 | 34.091 | 88 | 58 | 0 | 8 | 95 | 7 | 94 | 1.92e-17 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458680 | AT2G30130.1 | 63.351 | 191 | 54 | 2 | 2 | 176 | 3 | 193 | 6.55e-78 | 231 |
| Msa0458680 | AT1G31320.1 | 64.463 | 121 | 43 | 0 | 3 | 123 | 9 | 129 | 6.68e-51 | 161 |
| Msa0458680 | AT1G07900.1 | 66.055 | 109 | 37 | 0 | 6 | 114 | 32 | 140 | 3.16e-50 | 160 |
| Msa0458680 | AT2G28500.1 | 64.865 | 111 | 39 | 0 | 6 | 116 | 54 | 164 | 4.38e-50 | 161 |
| Msa0458680 | AT1G16530.1 | 62.162 | 111 | 41 | 1 | 2 | 111 | 9 | 119 | 4.69e-48 | 154 |
| Msa0458680 | AT5G63090.4 | 66.019 | 103 | 35 | 0 | 5 | 107 | 9 | 111 | 2.52e-47 | 152 |
| Msa0458680 | AT5G63090.3 | 66.019 | 103 | 35 | 0 | 5 | 107 | 9 | 111 | 2.52e-47 | 152 |
| Msa0458680 | AT5G63090.2 | 66.019 | 103 | 35 | 0 | 5 | 107 | 9 | 111 | 2.52e-47 | 152 |
| Msa0458680 | AT5G63090.1 | 66.019 | 103 | 35 | 0 | 5 | 107 | 9 | 111 | 2.52e-47 | 152 |
| Msa0458680 | AT5G66870.1 | 64.486 | 107 | 38 | 0 | 1 | 107 | 1 | 107 | 1.66e-46 | 154 |
| Msa0458680 | AT3G27650.1 | 60.577 | 104 | 41 | 0 | 5 | 108 | 37 | 140 | 1.89e-45 | 147 |
| Msa0458680 | AT2G30340.2 | 59.130 | 115 | 46 | 1 | 6 | 120 | 52 | 165 | 1.22e-44 | 148 |
| Msa0458680 | AT2G30340.1 | 59.130 | 115 | 46 | 1 | 6 | 120 | 51 | 164 | 1.36e-44 | 148 |
| Msa0458680 | AT2G23660.2 | 59.615 | 104 | 42 | 0 | 5 | 108 | 3 | 106 | 2.68e-44 | 149 |
| Msa0458680 | AT2G23660.3 | 59.615 | 104 | 42 | 0 | 5 | 108 | 3 | 106 | 2.68e-44 | 149 |
| Msa0458680 | AT2G23660.1 | 59.615 | 104 | 42 | 0 | 5 | 108 | 3 | 106 | 2.68e-44 | 149 |
| Msa0458680 | AT3G26620.1 | 55.263 | 114 | 51 | 0 | 8 | 121 | 6 | 119 | 3.48e-44 | 142 |
| Msa0458680 | AT3G26660.1 | 57.273 | 110 | 47 | 0 | 8 | 117 | 6 | 115 | 1.27e-43 | 141 |
| Msa0458680 | AT2G40470.2 | 63.158 | 114 | 42 | 0 | 6 | 119 | 19 | 132 | 4.29e-43 | 142 |
| Msa0458680 | AT2G40470.1 | 63.158 | 114 | 42 | 0 | 6 | 119 | 44 | 157 | 9.46e-43 | 142 |
| Msa0458680 | AT3G11090.1 | 61.538 | 104 | 40 | 0 | 5 | 108 | 9 | 112 | 9.65e-42 | 138 |
| Msa0458680 | AT1G65620.1 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.61e-40 | 135 |
| Msa0458680 | AT1G65620.4 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.61e-40 | 135 |
| Msa0458680 | AT1G65620.3 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.61e-40 | 135 |
| Msa0458680 | AT1G65620.5 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.61e-40 | 135 |
| Msa0458680 | AT1G65620.2 | 64.762 | 105 | 37 | 0 | 3 | 107 | 5 | 109 | 2.61e-40 | 135 |
| Msa0458680 | AT2G42430.1 | 54.054 | 111 | 49 | 2 | 2 | 111 | 11 | 120 | 3.17e-36 | 126 |
| Msa0458680 | AT3G03760.1 | 53.846 | 104 | 47 | 1 | 6 | 108 | 50 | 153 | 3.93e-36 | 127 |
| Msa0458680 | AT4G00210.1 | 52.778 | 108 | 50 | 1 | 5 | 111 | 9 | 116 | 7.87e-35 | 122 |
| Msa0458680 | AT5G06080.1 | 39.869 | 153 | 82 | 2 | 1 | 143 | 1 | 153 | 4.05e-34 | 119 |
| Msa0458680 | AT2G42440.1 | 47.101 | 138 | 68 | 4 | 2 | 138 | 3 | 136 | 4.77e-34 | 120 |
| Msa0458680 | AT2G45410.1 | 55.340 | 103 | 45 | 1 | 10 | 111 | 19 | 121 | 7.53e-34 | 119 |
| Msa0458680 | AT2G31310.1 | 49.533 | 107 | 53 | 1 | 1 | 106 | 1 | 107 | 1.23e-33 | 118 |
| Msa0458680 | AT4G00220.1 | 52.885 | 104 | 48 | 1 | 10 | 112 | 20 | 123 | 2.74e-33 | 118 |
| Msa0458680 | AT2G45420.1 | 50.000 | 104 | 51 | 1 | 10 | 112 | 40 | 143 | 1.47e-32 | 117 |
| Msa0458680 | AT3G58190.1 | 47.414 | 116 | 60 | 1 | 7 | 121 | 11 | 126 | 1.07e-31 | 114 |
| Msa0458680 | AT3G50510.1 | 46.729 | 107 | 57 | 0 | 1 | 107 | 6 | 112 | 1.21e-30 | 110 |
| Msa0458680 | AT3G50510.2 | 46.729 | 107 | 57 | 0 | 1 | 107 | 6 | 112 | 1.21e-30 | 110 |
| Msa0458680 | AT1G72980.1 | 37.903 | 124 | 76 | 1 | 2 | 124 | 8 | 131 | 1.26e-25 | 98.2 |
| Msa0458680 | AT5G35900.1 | 37.903 | 124 | 76 | 1 | 5 | 128 | 3 | 125 | 1.99e-25 | 97.4 |
| Msa0458680 | AT3G13850.1 | 34.815 | 135 | 85 | 1 | 8 | 142 | 37 | 168 | 3.45e-24 | 95.9 |
| Msa0458680 | AT3G47870.1 | 39.286 | 112 | 61 | 1 | 2 | 113 | 31 | 135 | 4.50e-24 | 96.7 |
| Msa0458680 | AT1G06280.1 | 46.753 | 77 | 41 | 0 | 8 | 84 | 25 | 101 | 5.99e-20 | 83.2 |
| Msa0458680 | AT4G22700.1 | 32.812 | 128 | 68 | 3 | 4 | 130 | 2 | 112 | 1.34e-16 | 73.9 |
| Msa0458680 | AT2G19820.1 | 36.458 | 96 | 60 | 1 | 6 | 100 | 11 | 106 | 2.86e-16 | 71.6 |
| Msa0458680 | AT5G15060.1 | 40.541 | 74 | 40 | 2 | 8 | 78 | 18 | 90 | 4.67e-13 | 63.5 |
| Msa0458680 | AT1G36000.1 | 31.034 | 87 | 60 | 0 | 7 | 93 | 9 | 95 | 6.93e-12 | 60.1 |
Find 30 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCATTGTTCATAAGGTCTT+TGG | 0.268404 | 3_3:+54585902 | Msa0458680:CDS |
| TGTTCACTGCTTCTGCTCTT+TGG | 0.304621 | 3_3:-54586725 | None:intergenic |
| GCTTCTGCTCTTTGGTGAAT+TGG | 0.315788 | 3_3:-54586717 | None:intergenic |
| TTGACTTTGAAGGTATGATA+TGG | 0.344536 | 3_3:-54586805 | None:intergenic |
| CAAGTTTGCCATTGTTCATA+AGG | 0.360416 | 3_3:+54585895 | Msa0458680:CDS |
| ATCTTTCATCAAATGGGATC+AGG | 0.403704 | 3_3:+54585782 | None:intergenic |
| AGAGTGAGAGATCCTGTTTA+TGG | 0.406868 | 3_3:+54586771 | Msa0458680:CDS |
| TCTTAAGAGGCTCATAATCT+TGG | 0.411156 | 3_3:-54587040 | None:intergenic |
| TAGTAGAGTCTTGTTGCATC+TGG | 0.421309 | 3_3:-54586881 | None:intergenic |
| GGGTCATCAGAAGGAAAGTA+AGG | 0.430456 | 3_3:-54585869 | None:intergenic |
| GCTCCAACACATCCATAAAC+AGG | 0.465710 | 3_3:-54586783 | None:intergenic |
| GAAGATGAAGAAGAAGAAGA+AGG | 0.511426 | 3_3:-54587008 | None:intergenic |
| CTCATAATCTTGGAATACAT+TGG | 0.523894 | 3_3:-54587030 | None:intergenic |
| ATTGTGAAACTTGACTTTGA+AGG | 0.527082 | 3_3:-54586815 | None:intergenic |
| CAATATCAGCAAAATGCTGC+AGG | 0.530826 | 3_3:+54585931 | Msa0458680:CDS |
| ATTACAAATGCAACTTGCAA+TGG | 0.534981 | 3_3:+54586836 | Msa0458680:CDS |
| GAAGGAAAGTTAATATACTG+TGG | 0.546177 | 3_3:-54586990 | None:intergenic |
| TCTGAAAATAGTAATTGCTA+TGG | 0.547956 | 3_3:+54586960 | Msa0458680:CDS |
| AACTTGCGTGGGTCATCAGA+AGG | 0.562825 | 3_3:-54585878 | None:intergenic |
| GATCCTGTTTATGGATGTGT+TGG | 0.563518 | 3_3:+54586780 | Msa0458680:CDS |
| TGAACAATGGCAAACTTGCG+TGG | 0.564051 | 3_3:-54585890 | None:intergenic |
| TCATCTTGATCAACATGTGT+TGG | 0.567464 | 3_3:-54586921 | None:intergenic |
| AACAATTTGCAAGAAGCACA+AGG | 0.605556 | 3_3:-54585812 | None:intergenic |
| GGTCATCAGAAGGAAAGTAA+GGG | 0.611738 | 3_3:-54585868 | None:intergenic |
| AACATGTGTTGGTAATGAGT+TGG | 0.621378 | 3_3:-54586910 | None:intergenic |
| GAACAATGGCAAACTTGCGT+GGG | 0.629522 | 3_3:-54585889 | None:intergenic |
| ACCAAAGACCTTATGAACAA+TGG | 0.629967 | 3_3:-54585903 | None:intergenic |
| TTTGCAAGAAGCACAAGGTG+AGG | 0.647847 | 3_3:-54585807 | None:intergenic |
| GTCATCAGAAGGAAAGTAAG+GGG | 0.680686 | 3_3:-54585867 | None:intergenic |
| GTTGAGAAGACGTTGCACAC+AGG | 0.684974 | 3_3:+54585832 | Msa0458680:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATAAAGGTATATGATT+AGG | - | chr3_3:54586307-54586326 | None:intergenic | 15.0% |
| !!! | TTTTATCTTTTTATTGTACT+TGG | + | chr3_3:54586644-54586663 | Msa0458680:intron | 15.0% |
| !!! | TTAAATAAAGGTATATGATT+AGG | - | chr3_3:54586307-54586326 | None:intergenic | 15.0% |
| !!! | TTTTATCTTTTTATTGTACT+TGG | + | chr3_3:54586644-54586663 | Msa0458680:intron | 15.0% |
| !! | TTAATTAAAGAGAATGATGT+TGG | + | chr3_3:54586248-54586267 | Msa0458680:intron | 20.0% |
| !! | TAATAAACATGACTCAATAT+TGG | + | chr3_3:54586672-54586691 | Msa0458680:intron | 20.0% |
| !! | TTAATTAAAGAGAATGATGT+TGG | + | chr3_3:54586248-54586267 | Msa0458680:intron | 20.0% |
| !! | TAATAAACATGACTCAATAT+TGG | + | chr3_3:54586672-54586691 | Msa0458680:intron | 20.0% |
| ! | CAAAAATTCATTGGACAAAA+AGG | - | chr3_3:54585982-54586001 | None:intergenic | 25.0% |
| !! | TTGTCCAATGAATTTTTGTA+AGG | + | chr3_3:54585984-54586003 | Msa0458680:intron | 25.0% |
| !! | TGTCCAATGAATTTTTGTAA+GGG | + | chr3_3:54585985-54586004 | Msa0458680:intron | 25.0% |
| ! | TAACCCTTACAAAAATTCAT+TGG | - | chr3_3:54585991-54586010 | None:intergenic | 25.0% |
| !! | TATTTCTACCTAAGAACTTA+AGG | + | chr3_3:54586109-54586128 | Msa0458680:intron | 25.0% |
| !! | AAAGGTATATGATTAGGATT+TGG | - | chr3_3:54586301-54586320 | None:intergenic | 25.0% |
| !!! | ATGTGTAGGGTTTTAAATAA+AGG | - | chr3_3:54586319-54586338 | None:intergenic | 25.0% |
| ! | TTTGAGTCTACATTAAGTAA+AGG | + | chr3_3:54586384-54586403 | Msa0458680:intron | 25.0% |
| !! | ATCTTTTTATTGTACTTGAG+AGG | + | chr3_3:54586439-54586458 | Msa0458680:intron | 25.0% |
| !! | TCTTTTTATTGTACTTGAGA+GGG | + | chr3_3:54586440-54586459 | Msa0458680:intron | 25.0% |
| ! | AACTTCTTGTGTTAAAAACA+GGG | + | chr3_3:54586529-54586548 | Msa0458680:intron | 25.0% |
| ! | TCTGAAAATAGTAATTGCTA+TGG | + | chr3_3:54586960-54586979 | Msa0458680:CDS | 25.0% |
| ! | CAAAAATTCATTGGACAAAA+AGG | - | chr3_3:54585982-54586001 | None:intergenic | 25.0% |
| !! | TTGTCCAATGAATTTTTGTA+AGG | + | chr3_3:54585984-54586003 | Msa0458680:intron | 25.0% |
| !! | TGTCCAATGAATTTTTGTAA+GGG | + | chr3_3:54585985-54586004 | Msa0458680:intron | 25.0% |
| ! | TAACCCTTACAAAAATTCAT+TGG | - | chr3_3:54585991-54586010 | None:intergenic | 25.0% |
| !! | TATTTCTACCTAAGAACTTA+AGG | + | chr3_3:54586109-54586128 | Msa0458680:intron | 25.0% |
| !! | AAAGGTATATGATTAGGATT+TGG | - | chr3_3:54586301-54586320 | None:intergenic | 25.0% |
| !!! | ATGTGTAGGGTTTTAAATAA+AGG | - | chr3_3:54586319-54586338 | None:intergenic | 25.0% |
| ! | TTTGAGTCTACATTAAGTAA+AGG | + | chr3_3:54586384-54586403 | Msa0458680:intron | 25.0% |
| !! | ATCTTTTTATTGTACTTGAG+AGG | + | chr3_3:54586439-54586458 | Msa0458680:intron | 25.0% |
| !! | TCTTTTTATTGTACTTGAGA+GGG | + | chr3_3:54586440-54586459 | Msa0458680:intron | 25.0% |
| ! | AACTTCTTGTGTTAAAAACA+GGG | + | chr3_3:54586529-54586548 | Msa0458680:intron | 25.0% |
| ! | TCTGAAAATAGTAATTGCTA+TGG | + | chr3_3:54586960-54586979 | Msa0458680:CDS | 25.0% |
| AATTTAGTCACAACATGACA+TGG | + | chr3_3:54586152-54586171 | Msa0458680:intron | 30.0% | |
| GTCATTCAAAATACTGATGT+TGG | + | chr3_3:54586272-54586291 | Msa0458680:intron | 30.0% | |
| AACTTGGAACAATATGTGTA+GGG | - | chr3_3:54586332-54586351 | None:intergenic | 30.0% | |
| AAACTTGGAACAATATGTGT+AGG | - | chr3_3:54586333-54586352 | None:intergenic | 30.0% | |
| CTACATTAAGTAAAGGATTG+TGG | + | chr3_3:54586391-54586410 | Msa0458680:intron | 30.0% | |
| CAACTTCTTGTGTTAAAAAC+AGG | + | chr3_3:54586528-54586547 | Msa0458680:intron | 30.0% | |
| !!! | TATTGGTATGTTTTGTTTGC+AGG | + | chr3_3:54586689-54586708 | Msa0458680:intron | 30.0% |
| ! | TTGACTTTGAAGGTATGATA+TGG | - | chr3_3:54586808-54586827 | None:intergenic | 30.0% |
| ATTGTGAAACTTGACTTTGA+AGG | - | chr3_3:54586818-54586837 | None:intergenic | 30.0% | |
| ATTACAAATGCAACTTGCAA+TGG | + | chr3_3:54586836-54586855 | Msa0458680:CDS | 30.0% | |
| GAAGGAAAGTTAATATACTG+TGG | - | chr3_3:54586993-54587012 | None:intergenic | 30.0% | |
| CTCATAATCTTGGAATACAT+TGG | - | chr3_3:54587033-54587052 | None:intergenic | 30.0% | |
| AATTTAGTCACAACATGACA+TGG | + | chr3_3:54586152-54586171 | Msa0458680:intron | 30.0% | |
| GTCATTCAAAATACTGATGT+TGG | + | chr3_3:54586272-54586291 | Msa0458680:intron | 30.0% | |
| AACTTGGAACAATATGTGTA+GGG | - | chr3_3:54586332-54586351 | None:intergenic | 30.0% | |
| AAACTTGGAACAATATGTGT+AGG | - | chr3_3:54586333-54586352 | None:intergenic | 30.0% | |
| CTACATTAAGTAAAGGATTG+TGG | + | chr3_3:54586391-54586410 | Msa0458680:intron | 30.0% | |
| CAACTTCTTGTGTTAAAAAC+AGG | + | chr3_3:54586528-54586547 | Msa0458680:intron | 30.0% | |
| !!! | TATTGGTATGTTTTGTTTGC+AGG | + | chr3_3:54586689-54586708 | Msa0458680:intron | 30.0% |
| ! | TTGACTTTGAAGGTATGATA+TGG | - | chr3_3:54586808-54586827 | None:intergenic | 30.0% |
| ATTGTGAAACTTGACTTTGA+AGG | - | chr3_3:54586818-54586837 | None:intergenic | 30.0% | |
| ATTACAAATGCAACTTGCAA+TGG | + | chr3_3:54586836-54586855 | Msa0458680:CDS | 30.0% | |
| GAAGGAAAGTTAATATACTG+TGG | - | chr3_3:54586993-54587012 | None:intergenic | 30.0% | |
| CTCATAATCTTGGAATACAT+TGG | - | chr3_3:54587033-54587052 | None:intergenic | 30.0% | |
| ! | AACAATTTGCAAGAAGCACA+AGG | - | chr3_3:54585815-54585834 | None:intergenic | 35.0% |
| CAAGTTTGCCATTGTTCATA+AGG | + | chr3_3:54585895-54585914 | Msa0458680:CDS | 35.0% | |
| ACCAAAGACCTTATGAACAA+TGG | - | chr3_3:54585906-54585925 | None:intergenic | 35.0% | |
| CCAAAACACCTTAAGTTCTT+AGG | - | chr3_3:54586120-54586139 | None:intergenic | 35.0% | |
| !! | CCTAAGAACTTAAGGTGTTT+TGG | + | chr3_3:54586117-54586136 | Msa0458680:intron | 35.0% |
| ATGGTAGCAAAGTTTGTATG+AGG | + | chr3_3:54586171-54586190 | Msa0458680:intron | 35.0% | |
| !!! | GAGCTTTTTTGCTTGAAACT+TGG | - | chr3_3:54586348-54586367 | None:intergenic | 35.0% |
| GTTTCAAGCAAAAAAGCTCT+TGG | + | chr3_3:54586349-54586368 | Msa0458680:intron | 35.0% | |
| GTAGACTCAAATTTAGCACA+TGG | - | chr3_3:54586375-54586394 | None:intergenic | 35.0% | |
| !! | AACATGTGTTGGTAATGAGT+TGG | - | chr3_3:54586913-54586932 | None:intergenic | 35.0% |
| TCATCTTGATCAACATGTGT+TGG | - | chr3_3:54586924-54586943 | None:intergenic | 35.0% | |
| GAAGATGAAGAAGAAGAAGA+AGG | - | chr3_3:54587011-54587030 | None:intergenic | 35.0% | |
| TCTTAAGAGGCTCATAATCT+TGG | - | chr3_3:54587043-54587062 | None:intergenic | 35.0% | |
| CAAAAAGTCTCTCTCTTAAG+AGG | - | chr3_3:54587056-54587075 | None:intergenic | 35.0% | |
| ! | CTCTTAAGAGAGAGACTTTT+TGG | + | chr3_3:54587054-54587073 | Msa0458680:CDS | 35.0% |
| ! | AACAATTTGCAAGAAGCACA+AGG | - | chr3_3:54585815-54585834 | None:intergenic | 35.0% |
| CAAGTTTGCCATTGTTCATA+AGG | + | chr3_3:54585895-54585914 | Msa0458680:CDS | 35.0% | |
| ACCAAAGACCTTATGAACAA+TGG | - | chr3_3:54585906-54585925 | None:intergenic | 35.0% | |
| CCAAAACACCTTAAGTTCTT+AGG | - | chr3_3:54586120-54586139 | None:intergenic | 35.0% | |
| !! | CCTAAGAACTTAAGGTGTTT+TGG | + | chr3_3:54586117-54586136 | Msa0458680:intron | 35.0% |
| ATGGTAGCAAAGTTTGTATG+AGG | + | chr3_3:54586171-54586190 | Msa0458680:intron | 35.0% | |
| !!! | GAGCTTTTTTGCTTGAAACT+TGG | - | chr3_3:54586348-54586367 | None:intergenic | 35.0% |
| GTTTCAAGCAAAAAAGCTCT+TGG | + | chr3_3:54586349-54586368 | Msa0458680:intron | 35.0% | |
| GTAGACTCAAATTTAGCACA+TGG | - | chr3_3:54586375-54586394 | None:intergenic | 35.0% | |
| !! | AACATGTGTTGGTAATGAGT+TGG | - | chr3_3:54586913-54586932 | None:intergenic | 35.0% |
| TCATCTTGATCAACATGTGT+TGG | - | chr3_3:54586924-54586943 | None:intergenic | 35.0% | |
| GAAGATGAAGAAGAAGAAGA+AGG | - | chr3_3:54587011-54587030 | None:intergenic | 35.0% | |
| TCTTAAGAGGCTCATAATCT+TGG | - | chr3_3:54587043-54587062 | None:intergenic | 35.0% | |
| CAAAAAGTCTCTCTCTTAAG+AGG | - | chr3_3:54587056-54587075 | None:intergenic | 35.0% | |
| ! | CTCTTAAGAGAGAGACTTTT+TGG | + | chr3_3:54587054-54587073 | Msa0458680:CDS | 35.0% |
| GTCATCAGAAGGAAAGTAAG+GGG | - | chr3_3:54585870-54585889 | None:intergenic | 40.0% | |
| GGTCATCAGAAGGAAAGTAA+GGG | - | chr3_3:54585871-54585890 | None:intergenic | 40.0% | |
| GCCATTGTTCATAAGGTCTT+TGG | + | chr3_3:54585902-54585921 | Msa0458680:CDS | 40.0% | |
| CAATATCAGCAAAATGCTGC+AGG | + | chr3_3:54585931-54585950 | Msa0458680:CDS | 40.0% | |
| AATGTCACAAGCTCAAGTCT+TGG | + | chr3_3:54586502-54586521 | Msa0458680:intron | 40.0% | |
| CTGCGTACAATACACCAAAA+TGG | + | chr3_3:54586557-54586576 | Msa0458680:intron | 40.0% | |
| AGAGTGAGAGATCCTGTTTA+TGG | + | chr3_3:54586771-54586790 | Msa0458680:CDS | 40.0% | |
| GATCCTGTTTATGGATGTGT+TGG | + | chr3_3:54586780-54586799 | Msa0458680:CDS | 40.0% | |
| !! | TAGTAGAGTCTTGTTGCATC+TGG | - | chr3_3:54586884-54586903 | None:intergenic | 40.0% |
| GTCATCAGAAGGAAAGTAAG+GGG | - | chr3_3:54585870-54585889 | None:intergenic | 40.0% | |
| GGTCATCAGAAGGAAAGTAA+GGG | - | chr3_3:54585871-54585890 | None:intergenic | 40.0% | |
| GCCATTGTTCATAAGGTCTT+TGG | + | chr3_3:54585902-54585921 | Msa0458680:CDS | 40.0% | |
| CAATATCAGCAAAATGCTGC+AGG | + | chr3_3:54585931-54585950 | Msa0458680:CDS | 40.0% | |
| AATGTCACAAGCTCAAGTCT+TGG | + | chr3_3:54586502-54586521 | Msa0458680:intron | 40.0% | |
| CTGCGTACAATACACCAAAA+TGG | + | chr3_3:54586557-54586576 | Msa0458680:intron | 40.0% | |
| AGAGTGAGAGATCCTGTTTA+TGG | + | chr3_3:54586771-54586790 | Msa0458680:CDS | 40.0% | |
| GATCCTGTTTATGGATGTGT+TGG | + | chr3_3:54586780-54586799 | Msa0458680:CDS | 40.0% | |
| !! | TAGTAGAGTCTTGTTGCATC+TGG | - | chr3_3:54586884-54586903 | None:intergenic | 40.0% |
| ! | TTTGCAAGAAGCACAAGGTG+AGG | - | chr3_3:54585810-54585829 | None:intergenic | 45.0% |
| GGGTCATCAGAAGGAAAGTA+AGG | - | chr3_3:54585872-54585891 | None:intergenic | 45.0% | |
| GAACAATGGCAAACTTGCGT+GGG | - | chr3_3:54585892-54585911 | None:intergenic | 45.0% | |
| TGAACAATGGCAAACTTGCG+TGG | - | chr3_3:54585893-54585912 | None:intergenic | 45.0% | |
| TTGTACTTGAGAGGGAGTCT+TGG | + | chr3_3:54586448-54586467 | Msa0458680:intron | 45.0% | |
| GCTTCTGCTCTTTGGTGAAT+TGG | - | chr3_3:54586720-54586739 | None:intergenic | 45.0% | |
| TGTTCACTGCTTCTGCTCTT+TGG | - | chr3_3:54586728-54586747 | None:intergenic | 45.0% | |
| GCTCCAACACATCCATAAAC+AGG | - | chr3_3:54586786-54586805 | None:intergenic | 45.0% | |
| ! | TTTGCAAGAAGCACAAGGTG+AGG | - | chr3_3:54585810-54585829 | None:intergenic | 45.0% |
| GGGTCATCAGAAGGAAAGTA+AGG | - | chr3_3:54585872-54585891 | None:intergenic | 45.0% | |
| GAACAATGGCAAACTTGCGT+GGG | - | chr3_3:54585892-54585911 | None:intergenic | 45.0% | |
| TGAACAATGGCAAACTTGCG+TGG | - | chr3_3:54585893-54585912 | None:intergenic | 45.0% | |
| TTGTACTTGAGAGGGAGTCT+TGG | + | chr3_3:54586448-54586467 | Msa0458680:intron | 45.0% | |
| GCTTCTGCTCTTTGGTGAAT+TGG | - | chr3_3:54586720-54586739 | None:intergenic | 45.0% | |
| TGTTCACTGCTTCTGCTCTT+TGG | - | chr3_3:54586728-54586747 | None:intergenic | 45.0% | |
| GCTCCAACACATCCATAAAC+AGG | - | chr3_3:54586786-54586805 | None:intergenic | 45.0% | |
| GTTGAGAAGACGTTGCACAC+AGG | + | chr3_3:54585832-54585851 | Msa0458680:CDS | 50.0% | |
| AACTTGCGTGGGTCATCAGA+AGG | - | chr3_3:54585881-54585900 | None:intergenic | 50.0% | |
| GTTGAGAAGACGTTGCACAC+AGG | + | chr3_3:54585832-54585851 | Msa0458680:CDS | 50.0% | |
| AACTTGCGTGGGTCATCAGA+AGG | - | chr3_3:54585881-54585900 | None:intergenic | 50.0% | |
| ! | GAGAGGGAGTCTTGGTGCAA+CGG | + | chr3_3:54586456-54586475 | Msa0458680:intron | 55.0% |
| ! | GGGAAGGGGTCTCACCATTT+TGG | - | chr3_3:54586574-54586593 | None:intergenic | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr3_3:54586600-54586619 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr3_3:54586601-54586620 | None:intergenic | 55.0% | |
| ! | GAGAGGGAGTCTTGGTGCAA+CGG | + | chr3_3:54586456-54586475 | Msa0458680:intron | 55.0% |
| ! | GGGAAGGGGTCTCACCATTT+TGG | - | chr3_3:54586574-54586593 | None:intergenic | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr3_3:54586600-54586619 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr3_3:54586601-54586620 | None:intergenic | 55.0% | |
| CATACGCAGGGTTGGGGAAG+GGG | - | chr3_3:54586588-54586607 | None:intergenic | 60.0% | |
| GCATACGCAGGGTTGGGGAA+GGG | - | chr3_3:54586589-54586608 | None:intergenic | 60.0% | |
| CTTCCCCAACCCTGCGTATG+CGG | + | chr3_3:54586588-54586607 | Msa0458680:intron | 60.0% | |
| TTCCCCAACCCTGCGTATGC+GGG | + | chr3_3:54586589-54586608 | Msa0458680:intron | 60.0% | |
| CATACGCAGGGTTGGGGAAG+GGG | - | chr3_3:54586588-54586607 | None:intergenic | 60.0% | |
| GCATACGCAGGGTTGGGGAA+GGG | - | chr3_3:54586589-54586608 | None:intergenic | 60.0% | |
| CTTCCCCAACCCTGCGTATG+CGG | + | chr3_3:54586588-54586607 | Msa0458680:intron | 60.0% | |
| TTCCCCAACCCTGCGTATGC+GGG | + | chr3_3:54586589-54586608 | Msa0458680:intron | 60.0% | |
| CGCATACGCAGGGTTGGGGA+AGG | - | chr3_3:54586590-54586609 | None:intergenic | 65.0% | |
| CTCCCGCATACGCAGGGTTG+GGG | - | chr3_3:54586594-54586613 | None:intergenic | 65.0% | |
| GCTCCCGCATACGCAGGGTT+GGG | - | chr3_3:54586595-54586614 | None:intergenic | 65.0% | |
| AGCTCCCGCATACGCAGGGT+TGG | - | chr3_3:54586596-54586615 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTTGGGGA+AGG | - | chr3_3:54586590-54586609 | None:intergenic | 65.0% | |
| CTCCCGCATACGCAGGGTTG+GGG | - | chr3_3:54586594-54586613 | None:intergenic | 65.0% | |
| GCTCCCGCATACGCAGGGTT+GGG | - | chr3_3:54586595-54586614 | None:intergenic | 65.0% | |
| AGCTCCCGCATACGCAGGGT+TGG | - | chr3_3:54586596-54586615 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 54585794 | 54587082 | 54585794 | ID=Msa0458680;Name=Msa0458680 |
| chr3_3 | mRNA | 54585794 | 54587082 | 54585794 | ID=Msa0458680-mRNA-1;Parent=Msa0458680;Name=Msa0458680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|176 |
| chr3_3 | exon | 54585794 | 54585952 | 54585794 | ID=Msa0458680-mRNA-1:exon:10786;Parent=Msa0458680-mRNA-1 |
| chr3_3 | exon | 54586711 | 54587082 | 54586711 | ID=Msa0458680-mRNA-1:exon:10787;Parent=Msa0458680-mRNA-1 |
| chr3_3 | CDS | 54585794 | 54585952 | 54585794 | ID=Msa0458680-mRNA-1:cds;Parent=Msa0458680-mRNA-1 |
| chr3_3 | CDS | 54586711 | 54587082 | 54586711 | ID=Msa0458680-mRNA-1:cds;Parent=Msa0458680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
