Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413580 | XP_003599327.1 | 96.591 | 176 | 5 | 1 | 19 | 193 | 1 | 176 | 2.01e-122 | 353 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413580 | sp|Q8LBW3|LBD12_ARATH | 63.351 | 191 | 54 | 2 | 20 | 194 | 3 | 193 | 2.18e-76 | 230 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413580 | G7J0R0 | 96.591 | 176 | 5 | 1 | 19 | 193 | 1 | 176 | 9.62e-123 | 353 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0413580 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0059880 | Msa0413580 | 0.829351 | 5.402756e-55 | -8.615850e-47 |
| Msa0150910 | Msa0413580 | 0.832306 | 1.019331e-55 | -8.615850e-47 |
| Msa0365720 | Msa0413580 | 0.890902 | 6.469039e-74 | -8.615850e-47 |
| Msa0413580 | Msa0458680 | 0.834394 | 3.074014e-56 | -8.615850e-47 |
| Msa0413580 | Msa0777070 | 0.806202 | 9.224740e-50 | -8.615850e-47 |
| Msa0413580 | Msa0814160 | 0.804258 | 2.354573e-49 | -8.615850e-47 |
| Msa0413580 | Msa0854840 | 0.813468 | 2.521005e-51 | -8.615850e-47 |
| Msa0413580 | Msa0883640 | 0.803490 | 3.400407e-49 | -8.615850e-47 |
| Msa0413580 | Msa0902340 | 0.812250 | 4.660565e-51 | -8.615850e-47 |
| Msa0413580 | Msa0910830 | 0.818031 | 2.423294e-52 | -8.615850e-47 |
| Msa0413580 | Msa0960090 | 0.804262 | 2.350546e-49 | -8.615850e-47 |
| Msa0413580 | Msa1024350 | 0.817923 | 2.563393e-52 | -8.615850e-47 |
| Msa0413580 | Msa1373560 | 0.809683 | 1.676429e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413580 | MtrunA17_Chr3g0106101 | 96.591 | 176 | 5 | 1 | 19 | 193 | 1 | 176 | 1.85e-126 | 353 |
| Msa0413580 | MtrunA17_Chr5g0437571 | 67.241 | 174 | 40 | 6 | 19 | 191 | 1 | 158 | 7.73e-76 | 225 |
| Msa0413580 | MtrunA17_Chr3g0114061 | 67.949 | 156 | 38 | 2 | 20 | 175 | 3 | 146 | 5.11e-72 | 215 |
| Msa0413580 | MtrunA17_Chr2g0311601 | 70.536 | 112 | 33 | 0 | 24 | 135 | 12 | 123 | 1.87e-57 | 178 |
| Msa0413580 | MtrunA17_Chr4g0043421 | 65.833 | 120 | 41 | 0 | 21 | 140 | 11 | 130 | 2.12e-57 | 178 |
| Msa0413580 | MtrunA17_Chr4g0030001 | 64.545 | 110 | 38 | 1 | 24 | 132 | 23 | 132 | 4.42e-48 | 155 |
| Msa0413580 | MtrunA17_Chr1g0200201 | 66.355 | 107 | 36 | 0 | 26 | 132 | 73 | 179 | 6.92e-48 | 156 |
| Msa0413580 | MtrunA17_Chr4g0058651 | 65.385 | 104 | 36 | 0 | 23 | 126 | 9 | 112 | 4.13e-47 | 152 |
| Msa0413580 | MtrunA17_Chr3g0117121 | 65.094 | 106 | 37 | 0 | 21 | 126 | 6 | 111 | 8.55e-47 | 152 |
| Msa0413580 | MtrunA17_Chr6g0449641 | 57.522 | 113 | 48 | 0 | 23 | 135 | 7 | 119 | 5.81e-46 | 148 |
| Msa0413580 | MtrunA17_Chr7g0227511 | 61.538 | 104 | 40 | 0 | 23 | 126 | 9 | 112 | 2.54e-45 | 147 |
| Msa0413580 | MtrunA17_Chr6g0449651 | 51.538 | 130 | 59 | 1 | 20 | 149 | 62 | 187 | 8.81e-45 | 147 |
| Msa0413580 | MtrunA17_Chr5g0438091 | 57.258 | 124 | 48 | 1 | 23 | 146 | 37 | 155 | 9.09e-45 | 147 |
| Msa0413580 | MtrunA17_Chr3g0129071 | 62.385 | 109 | 41 | 0 | 24 | 132 | 46 | 154 | 1.64e-44 | 147 |
| Msa0413580 | MtrunA17_Chr3g0115431 | 60.577 | 104 | 41 | 0 | 22 | 125 | 6 | 109 | 3.77e-44 | 146 |
| Msa0413580 | MtrunA17_Chr5g0402611 | 61.905 | 105 | 40 | 0 | 21 | 125 | 4 | 108 | 2.22e-43 | 147 |
| Msa0413580 | MtrunA17_Chr5g0437401 | 61.538 | 104 | 40 | 0 | 22 | 125 | 8 | 111 | 1.81e-42 | 140 |
| Msa0413580 | MtrunA17_Chr3g0097221 | 57.009 | 107 | 46 | 0 | 19 | 125 | 1 | 107 | 3.06e-42 | 143 |
| Msa0413580 | MtrunA17_Chr3g0113891 | 62.000 | 100 | 38 | 0 | 23 | 122 | 12 | 111 | 2.16e-41 | 138 |
| Msa0413580 | MtrunA17_Chr8g0353981 | 63.551 | 107 | 39 | 0 | 19 | 125 | 1 | 107 | 4.68e-41 | 138 |
| Msa0413580 | MtrunA17_Chr5g0432451 | 55.200 | 125 | 54 | 1 | 24 | 146 | 42 | 166 | 8.84e-41 | 138 |
| Msa0413580 | MtrunA17_Chr7g0260971 | 57.009 | 107 | 44 | 2 | 20 | 125 | 10 | 115 | 8.46e-38 | 130 |
| Msa0413580 | MtrunA17_Chr5g0444351 | 41.007 | 139 | 79 | 1 | 26 | 161 | 6 | 144 | 1.90e-37 | 126 |
| Msa0413580 | MtrunA17_Chr1g0184281 | 51.724 | 116 | 55 | 1 | 21 | 135 | 11 | 126 | 3.53e-37 | 128 |
| Msa0413580 | MtrunA17_Chr7g0225111 | 51.961 | 102 | 49 | 0 | 24 | 125 | 4 | 105 | 1.75e-36 | 123 |
| Msa0413580 | MtrunA17_Chr8g0351721 | 52.033 | 123 | 56 | 2 | 22 | 143 | 15 | 135 | 3.84e-36 | 125 |
| Msa0413580 | MtrunA17_Chr7g0245871 | 55.882 | 102 | 44 | 1 | 25 | 125 | 27 | 128 | 3.61e-34 | 121 |
| Msa0413580 | MtrunA17_Chr8g0351701 | 53.398 | 103 | 47 | 1 | 24 | 125 | 22 | 124 | 4.75e-34 | 120 |
| Msa0413580 | MtrunA17_Chr6g0460951 | 50.962 | 104 | 50 | 1 | 24 | 126 | 39 | 142 | 8.51e-34 | 120 |
| Msa0413580 | MtrunA17_Chr7g0261031 | 45.860 | 157 | 69 | 6 | 20 | 165 | 4 | 155 | 1.24e-33 | 119 |
| Msa0413580 | MtrunA17_Chr1g0184271 | 42.000 | 150 | 79 | 3 | 25 | 168 | 12 | 159 | 1.35e-32 | 117 |
| Msa0413580 | MtrunA17_Chr5g0435641 | 46.281 | 121 | 58 | 3 | 20 | 139 | 3 | 117 | 6.77e-31 | 111 |
| Msa0413580 | MtrunA17_Chr8g0374601 | 46.535 | 101 | 54 | 0 | 25 | 125 | 26 | 126 | 8.55e-31 | 113 |
| Msa0413580 | MtrunA17_Chr8g0374591 | 43.564 | 101 | 57 | 0 | 25 | 125 | 8 | 108 | 8.79e-31 | 109 |
| Msa0413580 | MtrunA17_Chr7g0245861 | 54.839 | 93 | 39 | 2 | 22 | 111 | 9 | 101 | 1.96e-29 | 106 |
| Msa0413580 | MtrunA17_Chr8g0374581 | 46.602 | 103 | 54 | 1 | 25 | 126 | 8 | 110 | 2.29e-29 | 108 |
| Msa0413580 | MtrunA17_Chr6g0460941 | 47.872 | 94 | 48 | 1 | 19 | 111 | 1 | 94 | 1.91e-27 | 99.8 |
| Msa0413580 | MtrunA17_Chr4g0059901 | 45.455 | 99 | 54 | 0 | 20 | 118 | 5 | 103 | 1.24e-26 | 102 |
| Msa0413580 | MtrunA17_Chr6g0452691 | 38.095 | 126 | 75 | 2 | 26 | 148 | 10 | 135 | 1.56e-25 | 97.4 |
| Msa0413580 | MtrunA17_Chr6g0452661 | 42.553 | 94 | 53 | 1 | 26 | 118 | 10 | 103 | 5.94e-25 | 97.4 |
| Msa0413580 | MtrunA17_Chr6g0452671 | 39.394 | 99 | 60 | 0 | 20 | 118 | 6 | 104 | 1.58e-24 | 95.1 |
| Msa0413580 | MtrunA17_Chr2g0330201 | 39.806 | 103 | 62 | 0 | 23 | 125 | 17 | 119 | 1.22e-23 | 95.1 |
| Msa0413580 | MtrunA17_Chr4g0040831 | 32.738 | 168 | 102 | 4 | 26 | 190 | 16 | 175 | 1.23e-23 | 93.2 |
| Msa0413580 | MtrunA17_Chr8g0342351 | 39.000 | 100 | 61 | 0 | 26 | 125 | 13 | 112 | 4.28e-23 | 92.8 |
| Msa0413580 | MtrunA17_Chr4g0055441 | 42.105 | 95 | 50 | 2 | 26 | 115 | 3 | 97 | 1.88e-21 | 85.9 |
| Msa0413580 | MtrunA17_Chr2g0326051 | 60.317 | 63 | 25 | 0 | 70 | 132 | 5 | 67 | 2.02e-21 | 85.1 |
| Msa0413580 | MtrunA17_Chr5g0439111 | 30.719 | 153 | 101 | 2 | 26 | 177 | 10 | 158 | 2.31e-20 | 85.1 |
| Msa0413580 | MtrunA17_Chr2g0326041 | 64.583 | 48 | 17 | 0 | 24 | 71 | 32 | 79 | 3.34e-19 | 78.2 |
| Msa0413580 | MtrunA17_Chr4g0046201 | 34.091 | 88 | 58 | 0 | 26 | 113 | 7 | 94 | 2.05e-17 | 77.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0413580 | AT2G30130.1 | 63.351 | 191 | 54 | 2 | 20 | 194 | 3 | 193 | 2.21e-77 | 230 |
| Msa0413580 | AT1G31320.1 | 63.710 | 124 | 40 | 1 | 21 | 144 | 9 | 127 | 1.36e-50 | 161 |
| Msa0413580 | AT1G07900.1 | 66.055 | 109 | 37 | 0 | 24 | 132 | 32 | 140 | 5.81e-50 | 160 |
| Msa0413580 | AT2G28500.1 | 64.865 | 111 | 39 | 0 | 24 | 134 | 54 | 164 | 7.10e-50 | 161 |
| Msa0413580 | AT1G16530.1 | 61.404 | 114 | 43 | 1 | 17 | 129 | 6 | 119 | 1.09e-48 | 156 |
| Msa0413580 | AT5G63090.4 | 66.019 | 103 | 35 | 0 | 23 | 125 | 9 | 111 | 5.86e-47 | 152 |
| Msa0413580 | AT5G63090.3 | 66.019 | 103 | 35 | 0 | 23 | 125 | 9 | 111 | 5.86e-47 | 152 |
| Msa0413580 | AT5G63090.2 | 66.019 | 103 | 35 | 0 | 23 | 125 | 9 | 111 | 5.86e-47 | 152 |
| Msa0413580 | AT5G63090.1 | 66.019 | 103 | 35 | 0 | 23 | 125 | 9 | 111 | 5.86e-47 | 152 |
| Msa0413580 | AT5G66870.1 | 64.486 | 107 | 38 | 0 | 19 | 125 | 1 | 107 | 4.33e-46 | 154 |
| Msa0413580 | AT3G27650.1 | 60.577 | 104 | 41 | 0 | 23 | 126 | 37 | 140 | 3.65e-45 | 147 |
| Msa0413580 | AT2G30340.2 | 59.130 | 115 | 46 | 1 | 24 | 138 | 52 | 165 | 3.28e-44 | 148 |
| Msa0413580 | AT2G30340.1 | 58.621 | 116 | 47 | 1 | 24 | 139 | 51 | 165 | 3.60e-44 | 148 |
| Msa0413580 | AT3G26620.1 | 55.263 | 114 | 51 | 0 | 26 | 139 | 6 | 119 | 5.22e-44 | 143 |
| Msa0413580 | AT2G23660.2 | 59.615 | 104 | 42 | 0 | 23 | 126 | 3 | 106 | 8.17e-44 | 148 |
| Msa0413580 | AT2G23660.3 | 59.615 | 104 | 42 | 0 | 23 | 126 | 3 | 106 | 8.17e-44 | 148 |
| Msa0413580 | AT2G23660.1 | 59.615 | 104 | 42 | 0 | 23 | 126 | 3 | 106 | 8.17e-44 | 148 |
| Msa0413580 | AT3G26660.1 | 57.273 | 110 | 47 | 0 | 26 | 135 | 6 | 115 | 1.64e-43 | 141 |
| Msa0413580 | AT2G40470.2 | 63.158 | 114 | 42 | 0 | 24 | 137 | 19 | 132 | 7.49e-43 | 142 |
| Msa0413580 | AT2G40470.1 | 63.158 | 114 | 42 | 0 | 24 | 137 | 44 | 157 | 1.32e-42 | 142 |
| Msa0413580 | AT3G11090.1 | 61.538 | 104 | 40 | 0 | 23 | 126 | 9 | 112 | 1.75e-41 | 138 |
| Msa0413580 | AT1G65620.1 | 64.762 | 105 | 37 | 0 | 21 | 125 | 5 | 109 | 3.12e-40 | 135 |
| Msa0413580 | AT1G65620.4 | 64.762 | 105 | 37 | 0 | 21 | 125 | 5 | 109 | 3.12e-40 | 135 |
| Msa0413580 | AT1G65620.3 | 64.762 | 105 | 37 | 0 | 21 | 125 | 5 | 109 | 3.12e-40 | 135 |
| Msa0413580 | AT1G65620.5 | 64.762 | 105 | 37 | 0 | 21 | 125 | 5 | 109 | 3.12e-40 | 135 |
| Msa0413580 | AT1G65620.2 | 64.762 | 105 | 37 | 0 | 21 | 125 | 5 | 109 | 3.12e-40 | 135 |
| Msa0413580 | AT2G42430.1 | 54.054 | 111 | 49 | 2 | 20 | 129 | 11 | 120 | 1.78e-35 | 125 |
| Msa0413580 | AT3G03760.1 | 53.846 | 104 | 47 | 1 | 24 | 126 | 50 | 153 | 2.34e-35 | 125 |
| Msa0413580 | AT4G00210.1 | 52.778 | 108 | 50 | 1 | 23 | 129 | 9 | 116 | 4.08e-34 | 120 |
| Msa0413580 | AT5G06080.1 | 39.869 | 153 | 82 | 2 | 19 | 161 | 1 | 153 | 1.39e-33 | 118 |
| Msa0413580 | AT2G42440.1 | 47.101 | 138 | 68 | 4 | 20 | 156 | 3 | 136 | 1.42e-33 | 120 |
| Msa0413580 | AT3G50510.1 | 47.321 | 112 | 59 | 0 | 14 | 125 | 1 | 112 | 2.82e-33 | 118 |
| Msa0413580 | AT3G50510.2 | 47.321 | 112 | 59 | 0 | 14 | 125 | 1 | 112 | 2.82e-33 | 118 |
| Msa0413580 | AT2G45410.1 | 55.340 | 103 | 45 | 1 | 28 | 129 | 19 | 121 | 3.41e-33 | 117 |
| Msa0413580 | AT2G31310.1 | 49.533 | 107 | 53 | 1 | 19 | 124 | 1 | 107 | 6.14e-33 | 117 |
| Msa0413580 | AT4G00220.1 | 52.885 | 104 | 48 | 1 | 28 | 130 | 20 | 123 | 1.40e-32 | 117 |
| Msa0413580 | AT2G45420.1 | 50.000 | 104 | 51 | 1 | 28 | 130 | 40 | 143 | 7.03e-32 | 116 |
| Msa0413580 | AT3G58190.1 | 47.414 | 116 | 60 | 1 | 25 | 139 | 11 | 126 | 2.67e-31 | 113 |
| Msa0413580 | AT1G72980.1 | 37.903 | 124 | 76 | 1 | 20 | 142 | 8 | 131 | 2.70e-25 | 97.8 |
| Msa0413580 | AT5G35900.1 | 37.903 | 124 | 76 | 1 | 23 | 146 | 3 | 125 | 4.74e-25 | 97.1 |
| Msa0413580 | AT3G47870.1 | 39.286 | 112 | 61 | 1 | 20 | 131 | 31 | 135 | 7.68e-24 | 96.7 |
| Msa0413580 | AT3G13850.1 | 42.105 | 95 | 55 | 0 | 26 | 120 | 37 | 131 | 1.21e-23 | 94.7 |
| Msa0413580 | AT1G06280.1 | 46.753 | 77 | 41 | 0 | 26 | 102 | 25 | 101 | 6.77e-20 | 83.6 |
| Msa0413580 | AT4G22700.1 | 35.238 | 105 | 66 | 2 | 22 | 125 | 2 | 105 | 2.78e-16 | 73.9 |
| Msa0413580 | AT2G19820.1 | 36.458 | 96 | 60 | 1 | 24 | 118 | 11 | 106 | 3.57e-16 | 71.6 |
| Msa0413580 | AT5G15060.1 | 40.541 | 74 | 40 | 2 | 26 | 96 | 18 | 90 | 7.74e-13 | 63.5 |
| Msa0413580 | AT1G36000.1 | 31.034 | 87 | 60 | 0 | 25 | 111 | 9 | 95 | 1.01e-11 | 60.1 |
Find 31 sgRNAs with CRISPR-Local
Find 156 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATAGTTTCTGCTTCATTT+TGG | 0.217367 | 3_2:+58060052 | None:intergenic |
| GCCATTGTTCATAAGGTCTT+TGG | 0.268404 | 3_2:+58060223 | Msa0413580:CDS |
| GCTTCTGCTCTTTGATGAAT+TGG | 0.304582 | 3_2:-58061051 | None:intergenic |
| TTGACTTTGAAGGTATGATA+TGG | 0.344536 | 3_2:-58061139 | None:intergenic |
| AATCTTTATCTTTCACCAAA+TGG | 0.344774 | 3_2:+58060096 | Msa0413580:CDS |
| CAAGTTTGCCATTGTTCATA+AGG | 0.360416 | 3_2:+58060216 | Msa0413580:CDS |
| ATCTTTATCTTTCACCAAAT+GGG | 0.379986 | 3_2:+58060097 | Msa0413580:CDS |
| ATCTTTCACCAAATGGGATC+AGG | 0.403704 | 3_2:+58060103 | Msa0413580:CDS |
| AGAGTGAGAGATCCTGTTTA+TGG | 0.406868 | 3_2:+58061105 | Msa0413580:CDS |
| TCTTAAGAGGCTCATAATCT+TGG | 0.411156 | 3_2:-58061374 | None:intergenic |
| TAGTAGAGTCTTGTTGCATC+TGG | 0.421309 | 3_2:-58061215 | None:intergenic |
| GTGAGGAACCTGATCCCATT+TGG | 0.447102 | 3_2:-58060111 | None:intergenic |
| GCTCCAACACATCCATAAAC+AGG | 0.465710 | 3_2:-58061117 | None:intergenic |
| GAAGATGAAGAAGAAGAAGA+AGG | 0.511426 | 3_2:-58061342 | None:intergenic |
| GGGTCATCAGAAGGAAAGTA+AGG | 0.522787 | 3_2:-58060190 | None:intergenic |
| CTCATAATCTTGGAATACAT+TGG | 0.523894 | 3_2:-58061364 | None:intergenic |
| ATTGTGAAACTTGACTTTGA+AGG | 0.527082 | 3_2:-58061149 | None:intergenic |
| CAATATCAGCAAAATGCTGC+AGG | 0.530826 | 3_2:+58060252 | Msa0413580:CDS |
| ATTACAAATGCAACTTGCAA+TGG | 0.534981 | 3_2:+58061170 | Msa0413580:CDS |
| GAAGGAAAGTTAATATACTG+TGG | 0.546177 | 3_2:-58061324 | None:intergenic |
| TCTGAAAATAGTAATTGCTA+TGG | 0.547956 | 3_2:+58061294 | Msa0413580:CDS |
| AACTTGCGTGGGTCATCAGA+AGG | 0.562825 | 3_2:-58060199 | None:intergenic |
| GATCCTGTTTATGGATGTGT+TGG | 0.563518 | 3_2:+58061114 | Msa0413580:CDS |
| TGAACAATGGCAAACTTGCG+TGG | 0.564051 | 3_2:-58060211 | None:intergenic |
| TCATCTTGATCAACATGTGT+TGG | 0.567464 | 3_2:-58061255 | None:intergenic |
| AACAATTTGCAAGAAGCACA+AGG | 0.605556 | 3_2:-58060133 | None:intergenic |
| AACATGTGTTGGTAATGAGT+TGG | 0.621378 | 3_2:-58061244 | None:intergenic |
| GAACAATGGCAAACTTGCGT+GGG | 0.629522 | 3_2:-58060210 | None:intergenic |
| ACCAAAGACCTTATGAACAA+TGG | 0.629967 | 3_2:-58060224 | None:intergenic |
| TTTGCAAGAAGCACAAGGTG+AGG | 0.647847 | 3_2:-58060128 | None:intergenic |
| GTTGAGAAGACGTTGCACAC+AGG | 0.684974 | 3_2:+58060153 | Msa0413580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATAAAGGTATATGATT+AGG | - | chr3_2:58060632-58060651 | None:intergenic | 15.0% |
| !!! | TTTTATCTTTTTATTGTACT+TGG | + | chr3_2:58060978-58060997 | Msa0413580:intron | 15.0% |
| !!! | TTAAATAAAGGTATATGATT+AGG | - | chr3_2:58060632-58060651 | None:intergenic | 15.0% |
| !!! | TTTTATCTTTTTATTGTACT+TGG | + | chr3_2:58060978-58060997 | Msa0413580:intron | 15.0% |
| !! | TTAATTAAAGAGAATGATGT+TGG | + | chr3_2:58060573-58060592 | Msa0413580:intron | 20.0% |
| !! | AACTTCTTGTATTAAAAACA+GGG | + | chr3_2:58060874-58060893 | Msa0413580:intron | 20.0% |
| !! | TAATAAACATGACTCAATAT+TGG | + | chr3_2:58061006-58061025 | Msa0413580:intron | 20.0% |
| !! | TTAATTAAAGAGAATGATGT+TGG | + | chr3_2:58060573-58060592 | Msa0413580:intron | 20.0% |
| !! | AACTTCTTGTATTAAAAACA+GGG | + | chr3_2:58060874-58060893 | Msa0413580:intron | 20.0% |
| !! | TAATAAACATGACTCAATAT+TGG | + | chr3_2:58061006-58061025 | Msa0413580:intron | 20.0% |
| ! | AATCTTTATCTTTCACCAAA+TGG | + | chr3_2:58060096-58060115 | Msa0413580:CDS | 25.0% |
| ! | ATCTTTATCTTTCACCAAAT+GGG | + | chr3_2:58060097-58060116 | Msa0413580:CDS | 25.0% |
| ! | CAAAAATTCATTGGACAAAA+AGG | - | chr3_2:58060303-58060322 | None:intergenic | 25.0% |
| !! | TTGTCCAATGAATTTTTGTA+AGG | + | chr3_2:58060305-58060324 | Msa0413580:intron | 25.0% |
| !! | TGTCCAATGAATTTTTGTAA+GGG | + | chr3_2:58060306-58060325 | Msa0413580:intron | 25.0% |
| ! | TAACCCTTACAAAAATTCAT+TGG | - | chr3_2:58060312-58060331 | None:intergenic | 25.0% |
| !! | TATTTCTACCTAAGAACTTA+AGG | + | chr3_2:58060434-58060453 | Msa0413580:intron | 25.0% |
| !! | AAAGGTATATGATTAGGATT+TGG | - | chr3_2:58060626-58060645 | None:intergenic | 25.0% |
| !!! | ATGTGTAGGGTTTTAAATAA+AGG | - | chr3_2:58060644-58060663 | None:intergenic | 25.0% |
| ! | TTTGAGTCTACATTAAGTAA+AGG | + | chr3_2:58060709-58060728 | Msa0413580:intron | 25.0% |
| !! | ATCTTTTTATTGTACTTGAG+AGG | + | chr3_2:58060784-58060803 | Msa0413580:intron | 25.0% |
| !! | TCTTTTTATTGTACTTGAGA+GGG | + | chr3_2:58060785-58060804 | Msa0413580:intron | 25.0% |
| ! | CAACTTCTTGTATTAAAAAC+AGG | + | chr3_2:58060873-58060892 | Msa0413580:intron | 25.0% |
| !!! | TATTGGTATGTTTTGTTTGT+AGG | + | chr3_2:58061023-58061042 | Msa0413580:intron | 25.0% |
| ! | TCTGAAAATAGTAATTGCTA+TGG | + | chr3_2:58061294-58061313 | Msa0413580:CDS | 25.0% |
| ! | AATCTTTATCTTTCACCAAA+TGG | + | chr3_2:58060096-58060115 | Msa0413580:CDS | 25.0% |
| ! | ATCTTTATCTTTCACCAAAT+GGG | + | chr3_2:58060097-58060116 | Msa0413580:CDS | 25.0% |
| ! | CAAAAATTCATTGGACAAAA+AGG | - | chr3_2:58060303-58060322 | None:intergenic | 25.0% |
| !! | TTGTCCAATGAATTTTTGTA+AGG | + | chr3_2:58060305-58060324 | Msa0413580:intron | 25.0% |
| !! | TGTCCAATGAATTTTTGTAA+GGG | + | chr3_2:58060306-58060325 | Msa0413580:intron | 25.0% |
| ! | TAACCCTTACAAAAATTCAT+TGG | - | chr3_2:58060312-58060331 | None:intergenic | 25.0% |
| !! | TATTTCTACCTAAGAACTTA+AGG | + | chr3_2:58060434-58060453 | Msa0413580:intron | 25.0% |
| !! | AAAGGTATATGATTAGGATT+TGG | - | chr3_2:58060626-58060645 | None:intergenic | 25.0% |
| !!! | ATGTGTAGGGTTTTAAATAA+AGG | - | chr3_2:58060644-58060663 | None:intergenic | 25.0% |
| ! | TTTGAGTCTACATTAAGTAA+AGG | + | chr3_2:58060709-58060728 | Msa0413580:intron | 25.0% |
| !! | ATCTTTTTATTGTACTTGAG+AGG | + | chr3_2:58060784-58060803 | Msa0413580:intron | 25.0% |
| !! | TCTTTTTATTGTACTTGAGA+GGG | + | chr3_2:58060785-58060804 | Msa0413580:intron | 25.0% |
| ! | CAACTTCTTGTATTAAAAAC+AGG | + | chr3_2:58060873-58060892 | Msa0413580:intron | 25.0% |
| !!! | TATTGGTATGTTTTGTTTGT+AGG | + | chr3_2:58061023-58061042 | Msa0413580:intron | 25.0% |
| ! | TCTGAAAATAGTAATTGCTA+TGG | + | chr3_2:58061294-58061313 | Msa0413580:CDS | 25.0% |
| AATTTAGTCACAACATGACA+TGG | + | chr3_2:58060477-58060496 | Msa0413580:intron | 30.0% | |
| GTCATTCAAAATACTGATGT+TGG | + | chr3_2:58060597-58060616 | Msa0413580:intron | 30.0% | |
| AACTTGGAACAATATGTGTA+GGG | - | chr3_2:58060657-58060676 | None:intergenic | 30.0% | |
| AAACTTGGAACAATATGTGT+AGG | - | chr3_2:58060658-58060677 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTTTGCTTGAAACT+TGG | - | chr3_2:58060673-58060692 | None:intergenic | 30.0% |
| GTTTCAAGCAAAAAAACTCT+TGG | + | chr3_2:58060674-58060693 | Msa0413580:intron | 30.0% | |
| CTACATTAAGTAAAGGATTG+TGG | + | chr3_2:58060716-58060735 | Msa0413580:intron | 30.0% | |
| ! | TAATACAAGAAGTTGTTTCC+AGG | - | chr3_2:58060868-58060887 | None:intergenic | 30.0% |
| ! | TTGACTTTGAAGGTATGATA+TGG | - | chr3_2:58061142-58061161 | None:intergenic | 30.0% |
| ATTGTGAAACTTGACTTTGA+AGG | - | chr3_2:58061152-58061171 | None:intergenic | 30.0% | |
| ATTACAAATGCAACTTGCAA+TGG | + | chr3_2:58061170-58061189 | Msa0413580:CDS | 30.0% | |
| GAAGGAAAGTTAATATACTG+TGG | - | chr3_2:58061327-58061346 | None:intergenic | 30.0% | |
| CTCATAATCTTGGAATACAT+TGG | - | chr3_2:58061367-58061386 | None:intergenic | 30.0% | |
| AATTTAGTCACAACATGACA+TGG | + | chr3_2:58060477-58060496 | Msa0413580:intron | 30.0% | |
| GTCATTCAAAATACTGATGT+TGG | + | chr3_2:58060597-58060616 | Msa0413580:intron | 30.0% | |
| AACTTGGAACAATATGTGTA+GGG | - | chr3_2:58060657-58060676 | None:intergenic | 30.0% | |
| AAACTTGGAACAATATGTGT+AGG | - | chr3_2:58060658-58060677 | None:intergenic | 30.0% | |
| !!! | GAGTTTTTTTGCTTGAAACT+TGG | - | chr3_2:58060673-58060692 | None:intergenic | 30.0% |
| GTTTCAAGCAAAAAAACTCT+TGG | + | chr3_2:58060674-58060693 | Msa0413580:intron | 30.0% | |
| CTACATTAAGTAAAGGATTG+TGG | + | chr3_2:58060716-58060735 | Msa0413580:intron | 30.0% | |
| ! | TAATACAAGAAGTTGTTTCC+AGG | - | chr3_2:58060868-58060887 | None:intergenic | 30.0% |
| ! | TTGACTTTGAAGGTATGATA+TGG | - | chr3_2:58061142-58061161 | None:intergenic | 30.0% |
| ATTGTGAAACTTGACTTTGA+AGG | - | chr3_2:58061152-58061171 | None:intergenic | 30.0% | |
| ATTACAAATGCAACTTGCAA+TGG | + | chr3_2:58061170-58061189 | Msa0413580:CDS | 30.0% | |
| GAAGGAAAGTTAATATACTG+TGG | - | chr3_2:58061327-58061346 | None:intergenic | 30.0% | |
| CTCATAATCTTGGAATACAT+TGG | - | chr3_2:58061367-58061386 | None:intergenic | 30.0% | |
| ! | AACAATTTGCAAGAAGCACA+AGG | - | chr3_2:58060136-58060155 | None:intergenic | 35.0% |
| CAAGTTTGCCATTGTTCATA+AGG | + | chr3_2:58060216-58060235 | Msa0413580:CDS | 35.0% | |
| ACCAAAGACCTTATGAACAA+TGG | - | chr3_2:58060227-58060246 | None:intergenic | 35.0% | |
| CCAAAACACCTTAAGTTCTT+AGG | - | chr3_2:58060445-58060464 | None:intergenic | 35.0% | |
| !! | CCTAAGAACTTAAGGTGTTT+TGG | + | chr3_2:58060442-58060461 | Msa0413580:intron | 35.0% |
| ATGGTAGCAAAGTTTGTATG+AGG | + | chr3_2:58060496-58060515 | Msa0413580:intron | 35.0% | |
| GTAGACTCAAATTTAGCACA+TGG | - | chr3_2:58060700-58060719 | None:intergenic | 35.0% | |
| !! | AACATGTGTTGGTAATGAGT+TGG | - | chr3_2:58061247-58061266 | None:intergenic | 35.0% |
| TCATCTTGATCAACATGTGT+TGG | - | chr3_2:58061258-58061277 | None:intergenic | 35.0% | |
| GAAGATGAAGAAGAAGAAGA+AGG | - | chr3_2:58061345-58061364 | None:intergenic | 35.0% | |
| TCTTAAGAGGCTCATAATCT+TGG | - | chr3_2:58061377-58061396 | None:intergenic | 35.0% | |
| CAAAAAGTCTCTCTCTTAAG+AGG | - | chr3_2:58061390-58061409 | None:intergenic | 35.0% | |
| ! | CTCTTAAGAGAGAGACTTTT+TGG | + | chr3_2:58061388-58061407 | Msa0413580:CDS | 35.0% |
| ! | AACAATTTGCAAGAAGCACA+AGG | - | chr3_2:58060136-58060155 | None:intergenic | 35.0% |
| CAAGTTTGCCATTGTTCATA+AGG | + | chr3_2:58060216-58060235 | Msa0413580:CDS | 35.0% | |
| ACCAAAGACCTTATGAACAA+TGG | - | chr3_2:58060227-58060246 | None:intergenic | 35.0% | |
| CCAAAACACCTTAAGTTCTT+AGG | - | chr3_2:58060445-58060464 | None:intergenic | 35.0% | |
| !! | CCTAAGAACTTAAGGTGTTT+TGG | + | chr3_2:58060442-58060461 | Msa0413580:intron | 35.0% |
| ATGGTAGCAAAGTTTGTATG+AGG | + | chr3_2:58060496-58060515 | Msa0413580:intron | 35.0% | |
| GTAGACTCAAATTTAGCACA+TGG | - | chr3_2:58060700-58060719 | None:intergenic | 35.0% | |
| !! | AACATGTGTTGGTAATGAGT+TGG | - | chr3_2:58061247-58061266 | None:intergenic | 35.0% |
| TCATCTTGATCAACATGTGT+TGG | - | chr3_2:58061258-58061277 | None:intergenic | 35.0% | |
| GAAGATGAAGAAGAAGAAGA+AGG | - | chr3_2:58061345-58061364 | None:intergenic | 35.0% | |
| TCTTAAGAGGCTCATAATCT+TGG | - | chr3_2:58061377-58061396 | None:intergenic | 35.0% | |
| CAAAAAGTCTCTCTCTTAAG+AGG | - | chr3_2:58061390-58061409 | None:intergenic | 35.0% | |
| ! | CTCTTAAGAGAGAGACTTTT+TGG | + | chr3_2:58061388-58061407 | Msa0413580:CDS | 35.0% |
| ATCTTTCACCAAATGGGATC+AGG | + | chr3_2:58060103-58060122 | Msa0413580:CDS | 40.0% | |
| GCCATTGTTCATAAGGTCTT+TGG | + | chr3_2:58060223-58060242 | Msa0413580:CDS | 40.0% | |
| CAATATCAGCAAAATGCTGC+AGG | + | chr3_2:58060252-58060271 | Msa0413580:CDS | 40.0% | |
| AAACAGGGTAAGACCCAAAA+TGG | + | chr3_2:58060889-58060908 | Msa0413580:intron | 40.0% | |
| GCTTCTGCTCTTTGATGAAT+TGG | - | chr3_2:58061054-58061073 | None:intergenic | 40.0% | |
| AGAGTGAGAGATCCTGTTTA+TGG | + | chr3_2:58061105-58061124 | Msa0413580:CDS | 40.0% | |
| GATCCTGTTTATGGATGTGT+TGG | + | chr3_2:58061114-58061133 | Msa0413580:CDS | 40.0% | |
| !! | TAGTAGAGTCTTGTTGCATC+TGG | - | chr3_2:58061218-58061237 | None:intergenic | 40.0% |
| ATCTTTCACCAAATGGGATC+AGG | + | chr3_2:58060103-58060122 | Msa0413580:CDS | 40.0% | |
| GCCATTGTTCATAAGGTCTT+TGG | + | chr3_2:58060223-58060242 | Msa0413580:CDS | 40.0% | |
| CAATATCAGCAAAATGCTGC+AGG | + | chr3_2:58060252-58060271 | Msa0413580:CDS | 40.0% | |
| AAACAGGGTAAGACCCAAAA+TGG | + | chr3_2:58060889-58060908 | Msa0413580:intron | 40.0% | |
| GCTTCTGCTCTTTGATGAAT+TGG | - | chr3_2:58061054-58061073 | None:intergenic | 40.0% | |
| AGAGTGAGAGATCCTGTTTA+TGG | + | chr3_2:58061105-58061124 | Msa0413580:CDS | 40.0% | |
| GATCCTGTTTATGGATGTGT+TGG | + | chr3_2:58061114-58061133 | Msa0413580:CDS | 40.0% | |
| !! | TAGTAGAGTCTTGTTGCATC+TGG | - | chr3_2:58061218-58061237 | None:intergenic | 40.0% |
| ! | TTTGCAAGAAGCACAAGGTG+AGG | - | chr3_2:58060131-58060150 | None:intergenic | 45.0% |
| GGGTCATCAGAAGGAAAGTA+AGG | - | chr3_2:58060193-58060212 | None:intergenic | 45.0% | |
| GAACAATGGCAAACTTGCGT+GGG | - | chr3_2:58060213-58060232 | None:intergenic | 45.0% | |
| TGAACAATGGCAAACTTGCG+TGG | - | chr3_2:58060214-58060233 | None:intergenic | 45.0% | |
| TTGTACTTGAGAGGGAGTCT+TGG | + | chr3_2:58060793-58060812 | Msa0413580:intron | 45.0% | |
| AGGGTAAGACCCAAAATGGT+GGG | + | chr3_2:58060893-58060912 | Msa0413580:intron | 45.0% | |
| GCTCCAACACATCCATAAAC+AGG | - | chr3_2:58061120-58061139 | None:intergenic | 45.0% | |
| ! | TTTGCAAGAAGCACAAGGTG+AGG | - | chr3_2:58060131-58060150 | None:intergenic | 45.0% |
| GGGTCATCAGAAGGAAAGTA+AGG | - | chr3_2:58060193-58060212 | None:intergenic | 45.0% | |
| GAACAATGGCAAACTTGCGT+GGG | - | chr3_2:58060213-58060232 | None:intergenic | 45.0% | |
| TGAACAATGGCAAACTTGCG+TGG | - | chr3_2:58060214-58060233 | None:intergenic | 45.0% | |
| TTGTACTTGAGAGGGAGTCT+TGG | + | chr3_2:58060793-58060812 | Msa0413580:intron | 45.0% | |
| AGGGTAAGACCCAAAATGGT+GGG | + | chr3_2:58060893-58060912 | Msa0413580:intron | 45.0% | |
| GCTCCAACACATCCATAAAC+AGG | - | chr3_2:58061120-58061139 | None:intergenic | 45.0% | |
| GTGAGGAACCTGATCCCATT+TGG | - | chr3_2:58060114-58060133 | None:intergenic | 50.0% | |
| GTTGAGAAGACGTTGCACAC+AGG | + | chr3_2:58060153-58060172 | Msa0413580:CDS | 50.0% | |
| AACTTGCGTGGGTCATCAGA+AGG | - | chr3_2:58060202-58060221 | None:intergenic | 50.0% | |
| AATGTCACGAGCTCAAGTCC+TGG | + | chr3_2:58060847-58060866 | Msa0413580:intron | 50.0% | |
| CAGGGTAAGACCCAAAATGG+TGG | + | chr3_2:58060892-58060911 | Msa0413580:intron | 50.0% | |
| GTGAGGAACCTGATCCCATT+TGG | - | chr3_2:58060114-58060133 | None:intergenic | 50.0% | |
| GTTGAGAAGACGTTGCACAC+AGG | + | chr3_2:58060153-58060172 | Msa0413580:CDS | 50.0% | |
| AACTTGCGTGGGTCATCAGA+AGG | - | chr3_2:58060202-58060221 | None:intergenic | 50.0% | |
| AATGTCACGAGCTCAAGTCC+TGG | + | chr3_2:58060847-58060866 | Msa0413580:intron | 50.0% | |
| CAGGGTAAGACCCAAAATGG+TGG | + | chr3_2:58060892-58060911 | Msa0413580:intron | 50.0% | |
| ! | GGAAGGGGTCCCACCATTTT+GGG | - | chr3_2:58060905-58060924 | None:intergenic | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr3_2:58060932-58060951 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr3_2:58060933-58060952 | None:intergenic | 55.0% | |
| ! | GGAAGGGGTCCCACCATTTT+GGG | - | chr3_2:58060905-58060924 | None:intergenic | 55.0% |
| CTAAAGCTCCCGCATACGCA+GGG | - | chr3_2:58060932-58060951 | None:intergenic | 55.0% | |
| ACTAAAGCTCCCGCATACGC+AGG | - | chr3_2:58060933-58060952 | None:intergenic | 55.0% | |
| GAGAGGGAGTCTTGGCGCAA+CGG | + | chr3_2:58060801-58060820 | Msa0413580:intron | 60.0% | |
| ! | GGGAAGGGGTCCCACCATTT+TGG | - | chr3_2:58060906-58060925 | None:intergenic | 60.0% |
| CATACGCAGGGTTCGGGAAG+GGG | - | chr3_2:58060920-58060939 | None:intergenic | 60.0% | |
| GCATACGCAGGGTTCGGGAA+GGG | - | chr3_2:58060921-58060940 | None:intergenic | 60.0% | |
| CTTCCCGAACCCTGCGTATG+CGG | + | chr3_2:58060920-58060939 | Msa0413580:intron | 60.0% | |
| TTCCCGAACCCTGCGTATGC+GGG | + | chr3_2:58060921-58060940 | Msa0413580:intron | 60.0% | |
| GAGAGGGAGTCTTGGCGCAA+CGG | + | chr3_2:58060801-58060820 | Msa0413580:intron | 60.0% | |
| ! | GGGAAGGGGTCCCACCATTT+TGG | - | chr3_2:58060906-58060925 | None:intergenic | 60.0% |
| CATACGCAGGGTTCGGGAAG+GGG | - | chr3_2:58060920-58060939 | None:intergenic | 60.0% | |
| GCATACGCAGGGTTCGGGAA+GGG | - | chr3_2:58060921-58060940 | None:intergenic | 60.0% | |
| CTTCCCGAACCCTGCGTATG+CGG | + | chr3_2:58060920-58060939 | Msa0413580:intron | 60.0% | |
| TTCCCGAACCCTGCGTATGC+GGG | + | chr3_2:58060921-58060940 | Msa0413580:intron | 60.0% | |
| CGCATACGCAGGGTTCGGGA+AGG | - | chr3_2:58060922-58060941 | None:intergenic | 65.0% | |
| CTCCCGCATACGCAGGGTTC+GGG | - | chr3_2:58060926-58060945 | None:intergenic | 65.0% | |
| GCTCCCGCATACGCAGGGTT+CGG | - | chr3_2:58060927-58060946 | None:intergenic | 65.0% | |
| CGCATACGCAGGGTTCGGGA+AGG | - | chr3_2:58060922-58060941 | None:intergenic | 65.0% | |
| CTCCCGCATACGCAGGGTTC+GGG | - | chr3_2:58060926-58060945 | None:intergenic | 65.0% | |
| GCTCCCGCATACGCAGGGTT+CGG | - | chr3_2:58060927-58060946 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 58060061 | 58061416 | 58060061 | ID=Msa0413580;Name=Msa0413580 |
| chr3_2 | mRNA | 58060061 | 58061416 | 58060061 | ID=Msa0413580-mRNA-1;Parent=Msa0413580;Name=Msa0413580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|194 |
| chr3_2 | exon | 58060061 | 58060273 | 58060061 | ID=Msa0413580-mRNA-1:exon:11995;Parent=Msa0413580-mRNA-1 |
| chr3_2 | exon | 58061045 | 58061416 | 58061045 | ID=Msa0413580-mRNA-1:exon:11996;Parent=Msa0413580-mRNA-1 |
| chr3_2 | CDS | 58060061 | 58060273 | 58060061 | ID=Msa0413580-mRNA-1:cds;Parent=Msa0413580-mRNA-1 |
| chr3_2 | CDS | 58061045 | 58061416 | 58061045 | ID=Msa0413580-mRNA-1:cds;Parent=Msa0413580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
