Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458920 | XP_003599292.2 | 92.777 | 443 | 19 | 1 | 1 | 430 | 1 | 443 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458920 | sp|P51398|RT29_HUMAN | 24.022 | 358 | 223 | 10 | 89 | 418 | 51 | 387 | 1.78e-18 | 90.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458920 | G7J0M5 | 92.777 | 443 | 19 | 1 | 1 | 430 | 1 | 443 | 0.0 | 848 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0458920 | Msa0467490 | 0.803244 | 3.824430e-49 | -8.615850e-47 |
| Msa0458920 | Msa1175440 | 0.803536 | 3.326553e-49 | -8.615850e-47 |
| Msa0458920 | Msa1234310 | 0.803672 | 3.117297e-49 | -8.615850e-47 |
| Msa0279700 | Msa0458920 | 0.808706 | 2.714355e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458920 | MtrunA17_Chr3g0106531 | 92.777 | 443 | 19 | 1 | 1 | 430 | 1 | 443 | 0.0 | 848 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0458920 | AT1G16870.1 | 69.452 | 383 | 103 | 2 | 62 | 430 | 98 | 480 | 0.0 | 557 |
Find 112 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTTGTCATTATTATTTA+AGG | 0.114353 | 3_3:-55112444 | Msa0458920:intron |
| ATGGGATTGGATCAAATATT+TGG | 0.190552 | 3_3:+55113287 | None:intergenic |
| GGGTATGGAGAAGGAGTTTA+AGG | 0.205373 | 3_3:-55115331 | Msa0458920:CDS |
| GGCGGTGGTGGCAGGGGTTT+TGG | 0.252832 | 3_3:+55115701 | None:intergenic |
| GTACAATGAATCCTACTTAA+AGG | 0.259888 | 3_3:-55113320 | Msa0458920:CDS |
| ATCATAGGATAGGATAAAAT+TGG | 0.260680 | 3_3:-55111640 | Msa0458920:three_prime_UTR |
| GTGGCGTTGGCGGTGGTGGC+AGG | 0.265324 | 3_3:+55115693 | None:intergenic |
| AAGCATTCACAGAAGATAAT+TGG | 0.280842 | 3_3:-55111833 | Msa0458920:CDS |
| AAGAAACATCAATATTATTA+TGG | 0.295093 | 3_3:+55111681 | None:intergenic |
| TTCTATAAGCATCCGCAAAC+AGG | 0.321103 | 3_3:-55114172 | Msa0458920:CDS |
| ACTCCAGCACCCTCACCTAA+TGG | 0.332107 | 3_3:+55113268 | None:intergenic |
| GGCGGTGGCGTTGGCGGTGG+TGG | 0.343065 | 3_3:+55115689 | None:intergenic |
| CTGTTACAATTCGTTCTTGT+CGG | 0.347934 | 3_3:-55112926 | Msa0458920:CDS |
| CCTGTCTCCAGTATAATAAC+TGG | 0.349768 | 3_3:-55112974 | Msa0458920:intron |
| TGTTGGCTTTGTTGGAGATT+TGG | 0.350001 | 3_3:+55115743 | None:intergenic |
| GTGAAGAGGCGTCGGCCATT+GGG | 0.360543 | 3_3:+55115591 | None:intergenic |
| GTTTCCTCGATACAGTTTAG+AGG | 0.363867 | 3_3:-55112476 | Msa0458920:CDS |
| GGCGTTGGCGGTGGTGGCAG+GGG | 0.366016 | 3_3:+55115695 | None:intergenic |
| AAGCAAATTAAACAGATTAG+TGG | 0.372839 | 3_3:+55111600 | None:intergenic |
| TAGTTTAGAGATGAGATTGT+TGG | 0.389293 | 3_3:+55115771 | None:intergenic |
| GTAAGTTCTTTAGCATGTAT+TGG | 0.392858 | 3_3:+55112903 | None:intergenic |
| AAAGCTTCGTAAAGACTTAC+CGG | 0.396657 | 3_3:-55112524 | Msa0458920:CDS |
| ATATTTGATCCAATCCCATT+AGG | 0.398910 | 3_3:-55113283 | Msa0458920:CDS |
| ACAGTCAGAACACATTTCAT+TGG | 0.399509 | 3_3:+55111707 | None:intergenic |
| ATGCTCTTCCCACAACTAAC+AGG | 0.405346 | 3_3:+55114286 | None:intergenic |
| CTCCAGCACCCTCACCTAAT+GGG | 0.410782 | 3_3:+55113269 | None:intergenic |
| TGGCGTTGGCGGTGGTGGCA+GGG | 0.413872 | 3_3:+55115694 | None:intergenic |
| ATGGAAGAGAGCTACGAAAC+TGG | 0.413935 | 3_3:+55115914 | None:intergenic |
| AGTGAAGAGGCGTCGGCCAT+TGG | 0.420429 | 3_3:+55115590 | None:intergenic |
| CGACAAGAACGAATTGTAAC+AGG | 0.422331 | 3_3:+55112927 | None:intergenic |
| TTGGAGTGGTAGTTCGTTTG+AGG | 0.435531 | 3_3:-55113150 | Msa0458920:CDS |
| GTTGAAAGATGTTGATTCAA+TGG | 0.436711 | 3_3:-55113239 | Msa0458920:CDS |
| GATGTCGGCGGTGGCGTTGG+CGG | 0.441588 | 3_3:+55115683 | None:intergenic |
| GGCTAGAGAAGAAGGTTGGT+TGG | 0.444143 | 3_3:-55114239 | Msa0458920:CDS |
| GAAGATGTCGGCGGTGGCGT+TGG | 0.445606 | 3_3:+55115680 | None:intergenic |
| TGGGGCCGACGTTGAGTGAT+GGG | 0.447063 | 3_3:+55115610 | None:intergenic |
| GTGAGGGTGCTGGAGTTGGT+TGG | 0.448655 | 3_3:-55113261 | Msa0458920:CDS |
| GTCGGCGGTGGCGTTGGCGG+TGG | 0.449898 | 3_3:+55115686 | None:intergenic |
| AGCATCCGCAAACAGGGCTA+TGG | 0.450486 | 3_3:-55114165 | Msa0458920:CDS |
| TATCTTCTGTGAATGCTTCA+CGG | 0.451514 | 3_3:+55111838 | None:intergenic |
| TTGGGGCCGACGTTGAGTGA+TGG | 0.453507 | 3_3:+55115609 | None:intergenic |
| ATACCCATTGGCAACCCTTC+AGG | 0.454274 | 3_3:+55115348 | None:intergenic |
| GTTCAGTGGGCTAGAGAAGA+AGG | 0.458017 | 3_3:-55114247 | Msa0458920:CDS |
| TAGATGGTCCTGTTAGTTGT+GGG | 0.458076 | 3_3:-55114294 | Msa0458920:CDS |
| TGATCAATTGCAATAAGAAC+AGG | 0.464590 | 3_3:+55113100 | None:intergenic |
| TCATATAACATTGTACCTTC+AGG | 0.465490 | 3_3:+55113211 | None:intergenic |
| CGCTTGCAATGCTTGTTCAG+TGG | 0.466093 | 3_3:-55114261 | Msa0458920:CDS |
| TTTCGTCGGCGGTGAGGTTG+CGG | 0.467640 | 3_3:+55115637 | None:intergenic |
| GTTTACATTCAGTGAGTATG+AGG | 0.478979 | 3_3:-55112952 | Msa0458920:CDS |
| GTCATGAGCTATATTATCAT+AGG | 0.480947 | 3_3:-55111655 | Msa0458920:three_prime_UTR |
| GCACCCTCACCTAATGGGAT+TGG | 0.488190 | 3_3:+55113274 | None:intergenic |
| AGGACATTCTCAGCCTGGAC+AGG | 0.493448 | 3_3:+55114136 | None:intergenic |
| AGCTACGAAACTGGAAGAAG+AGG | 0.499418 | 3_3:+55115923 | None:intergenic |
| CTTTGAGGACATTCTCAGCC+TGG | 0.500631 | 3_3:+55114131 | None:intergenic |
| ATGTTCCTAGCGCAAAAGAA+TGG | 0.502917 | 3_3:-55114210 | Msa0458920:CDS |
| GAGATGAGATTGTTGGAGTG+AGG | 0.503424 | 3_3:+55115778 | None:intergenic |
| TGAAGGGTTGCCAATGGGTA+TGG | 0.506428 | 3_3:-55115346 | Msa0458920:CDS |
| GCTTGCAATGCTTGTTCAGT+GGG | 0.509576 | 3_3:-55114260 | Msa0458920:CDS |
| GTTGTTGGTGAGCTTAGATA+AGG | 0.511417 | 3_3:+55115557 | None:intergenic |
| ATCCCATTAGGTGAGGGTGC+TGG | 0.514336 | 3_3:-55113271 | Msa0458920:CDS |
| TTGCCTGAAGGGTTGCCAAT+GGG | 0.516362 | 3_3:-55115351 | Msa0458920:CDS |
| TCACTCAACGTCGGCCCCAA+TGG | 0.516467 | 3_3:-55115606 | Msa0458920:CDS |
| GTAAGTGCAGGTATCGTTGT+TGG | 0.517023 | 3_3:+55115542 | None:intergenic |
| GCATGGCAGTTCCTTTAAGT+AGG | 0.520686 | 3_3:+55113309 | None:intergenic |
| GTCGAAGAAGATGTCGGCGG+TGG | 0.522129 | 3_3:+55115674 | None:intergenic |
| TTAGGTGAGGGTGCTGGAGT+TGG | 0.522232 | 3_3:-55113265 | Msa0458920:CDS |
| GCATCCGCAAACAGGGCTAT+GGG | 0.524616 | 3_3:-55114164 | Msa0458920:CDS |
| TTAGATGGTCCTGTTAGTTG+TGG | 0.530984 | 3_3:-55114295 | Msa0458920:CDS |
| GAGCTATATTATCATAGGAT+AGG | 0.534573 | 3_3:-55111650 | Msa0458920:three_prime_UTR |
| AACTCCTTCTCCATACCCAT+TGG | 0.538826 | 3_3:+55115336 | None:intergenic |
| TGCATGATGATATGATGGTA+GGG | 0.542729 | 3_3:-55112573 | Msa0458920:CDS |
| GATGTCTGTCATCGCATGAA+AGG | 0.544467 | 3_3:+55111756 | None:intergenic |
| TTCTCTCATTCAACAGCTGT+AGG | 0.545667 | 3_3:-55112547 | Msa0458920:CDS |
| GCTATGGGATACACCTGTCC+AGG | 0.547512 | 3_3:-55114149 | Msa0458920:CDS |
| TTTGCCTGAAGGGTTGCCAA+TGG | 0.554252 | 3_3:-55115352 | Msa0458920:CDS |
| AGCGCAAAAGAATGGACTCA+TGG | 0.561206 | 3_3:-55114202 | Msa0458920:CDS |
| GTATCCCATAGCCCTGTTTG+CGG | 0.561521 | 3_3:+55114160 | None:intergenic |
| AATGATGCATGATGATATGA+TGG | 0.562422 | 3_3:-55112578 | Msa0458920:CDS |
| TTATATGAGCTGGTGAGGAC+TGG | 0.563331 | 3_3:-55113196 | Msa0458920:CDS |
| CGAGCATCTACCGGTACATC+CGG | 0.564569 | 3_3:+55112505 | None:intergenic |
| TGAAGAGGCGTCGGCCATTG+GGG | 0.565973 | 3_3:+55115592 | None:intergenic |
| CAATGTTATATGAGCTGGTG+AGG | 0.568336 | 3_3:-55113201 | Msa0458920:CDS |
| ATGGGAATGGAACAGAAATG+AGG | 0.568750 | 3_3:-55111788 | Msa0458920:CDS |
| GAACAAACACATGCAGCTGT+TGG | 0.571799 | 3_3:-55113169 | Msa0458920:CDS |
| CGTGAGGTTAACGTAAGTGC+AGG | 0.574061 | 3_3:+55115530 | None:intergenic |
| AGGAAGAAGCGGAAGTGAAG+AGG | 0.574555 | 3_3:+55115577 | None:intergenic |
| AACATAGCACGAGCATCTAC+CGG | 0.574696 | 3_3:+55112496 | None:intergenic |
| TAAAGACTTACCGGATGTAC+CGG | 0.575503 | 3_3:-55112515 | Msa0458920:CDS |
| ATTGGATCAAATATTTGGCA+TGG | 0.576246 | 3_3:+55113292 | None:intergenic |
| ATGCATGATGATATGATGGT+AGG | 0.579098 | 3_3:-55112574 | Msa0458920:CDS |
| CTAAGATGAATCAGAAAGAG+TGG | 0.585850 | 3_3:+55115878 | None:intergenic |
| ATAATAATGACAAACAGTCT+CGG | 0.588365 | 3_3:+55112450 | None:intergenic |
| AGTGGGCTAGAGAAGAAGGT+TGG | 0.589906 | 3_3:-55114243 | Msa0458920:CDS |
| TGGGAATGGAACAGAAATGA+GGG | 0.590727 | 3_3:-55111787 | Msa0458920:CDS |
| TGATCCAATCCCATTAGGTG+AGG | 0.592137 | 3_3:-55113278 | Msa0458920:CDS |
| GAGCTTAGATAAGGAAGAAG+CGG | 0.593215 | 3_3:+55115566 | None:intergenic |
| GTTGCCAATGGGTATGGAGA+AGG | 0.594421 | 3_3:-55115340 | Msa0458920:CDS |
| GATTCAATGGCAATTCCTGA+AGG | 0.594538 | 3_3:-55113226 | Msa0458920:CDS |
| AAGCGGAAGTGAAGAGGCGT+CGG | 0.595716 | 3_3:+55115583 | None:intergenic |
| AGGTACAATGTTATATGAGC+TGG | 0.596373 | 3_3:-55113206 | Msa0458920:CDS |
| TTGTTCGTCGAAGAAGATGT+CGG | 0.598737 | 3_3:+55115668 | None:intergenic |
| TCTATAAGCATCCGCAAACA+GGG | 0.603214 | 3_3:-55114171 | Msa0458920:CDS |
| GATCCAATCCCATTAGGTGA+GGG | 0.607998 | 3_3:-55113277 | Msa0458920:CDS |
| TAAGATGAATCAGAAAGAGT+GGG | 0.614905 | 3_3:+55115879 | None:intergenic |
| AACACATGCAGCTGTTGGAG+TGG | 0.617662 | 3_3:-55113164 | Msa0458920:CDS |
| GGGAATGGAACAGAAATGAG+GGG | 0.638982 | 3_3:-55111786 | Msa0458920:CDS |
| ACATGCTAAAGAACTTACAA+TGG | 0.647929 | 3_3:-55112898 | Msa0458920:intron |
| GCATGATGATATGATGGTAG+GGG | 0.656006 | 3_3:-55112572 | Msa0458920:CDS |
| GGAATGGAACAGAAATGAGG+GGG | 0.689590 | 3_3:-55111785 | Msa0458920:CDS |
| GCTTCCTCTAAACTGTATCG+AGG | 0.702408 | 3_3:+55112472 | None:intergenic |
| TTCGTCGAAGAAGATGTCGG+CGG | 0.712655 | 3_3:+55115671 | None:intergenic |
| GCAAAAGAATGGACTCATGG+AGG | 0.714182 | 3_3:-55114199 | Msa0458920:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTTTTTTAAATTTTGTA+GGG | - | chr3_3:55113102-55113121 | Msa0458920:CDS | 10.0% |
| !! | AATTAAATATACAAATAAGT+AGG | + | chr3_3:55113966-55113985 | None:intergenic | 10.0% |
| !! | TTTATCAATAAAAAATGTAT+AGG | + | chr3_3:55114609-55114628 | None:intergenic | 10.0% |
| !!! | TTCAATTTTTGACTTTTTTT+TGG | - | chr3_3:55112015-55112034 | Msa0458920:intron | 15.0% |
| !!! | TCAATTTTTGACTTTTTTTT+GGG | - | chr3_3:55112016-55112035 | Msa0458920:intron | 15.0% |
| !!! | GAATCTTTTTTAAATTTTGT+AGG | - | chr3_3:55113101-55113120 | Msa0458920:CDS | 15.0% |
| !!! | ATCTTTTTTAAATTTTGTAG+GGG | - | chr3_3:55113103-55113122 | Msa0458920:CDS | 15.0% |
| !! | GAAAAAGATATAAATATACA+AGG | + | chr3_3:55115291-55115310 | None:intergenic | 15.0% |
| !! | AAAATTAATACTTCTACTTA+AGG | + | chr3_3:55115318-55115337 | None:intergenic | 15.0% |
| !!! | TATTTTTTACTATGATAACT+AGG | - | chr3_3:55115401-55115420 | Msa0458920:intron | 15.0% |
| !! | ATATTCTTTCAAAAGATATT+AGG | + | chr3_3:55115469-55115488 | None:intergenic | 15.0% |
| !!! | AAAATTTACTTTTTATGCAA+TGG | - | chr3_3:55115637-55115656 | Msa0458920:CDS | 15.0% |
| !!! | AAATTTACTTTTTATGCAAT+GGG | - | chr3_3:55115638-55115657 | Msa0458920:CDS | 15.0% |
| !! | AAGAAACATCAATATTATTA+TGG | + | chr3_3:55115766-55115785 | None:intergenic | 15.0% |
| !!! | AACATTTTTGTTAAACGTTT+TGG | + | chr3_3:55111595-55111614 | None:intergenic | 20.0% |
| !! | TATTAGAGAAACTATCAAAA+AGG | - | chr3_3:55112559-55112578 | Msa0458920:CDS | 20.0% |
| !!! | AAAGTTATTTCTATAGCAAA+AGG | + | chr3_3:55112795-55112814 | None:intergenic | 20.0% |
| !! | TTATAGAAATATACCATGTT+TGG | + | chr3_3:55112883-55112902 | None:intergenic | 20.0% |
| !!! | TCATAATATGATTTTGAAGA+AGG | - | chr3_3:55113927-55113946 | Msa0458920:intron | 20.0% |
| !!! | AAGTTAACTTTTCTCAAAAT+TGG | - | chr3_3:55114412-55114431 | Msa0458920:intron | 20.0% |
| !!! | AGTTAACTTTTCTCAAAATT+GGG | - | chr3_3:55114413-55114432 | Msa0458920:intron | 20.0% |
| !! | CTGTTTGTCATTATTATTTA+AGG | - | chr3_3:55115000-55115019 | Msa0458920:intron | 20.0% |
| !! | AACAATGATACATTACAAAT+AGG | + | chr3_3:55115165-55115184 | None:intergenic | 20.0% |
| !! | TTTCAGTATCAATCAAAAAA+GGG | + | chr3_3:55115500-55115519 | None:intergenic | 20.0% |
| !!! | AATATGAAACACAATTTTCA+AGG | + | chr3_3:55115540-55115559 | None:intergenic | 20.0% |
| ! | AACGTTTAACAAAAATGTTG+CGG | - | chr3_3:55111596-55111615 | Msa0458920:three_prime_UTR | 25.0% |
| !!! | TTAAGCTTTGTTTTTCATTG+TGG | - | chr3_3:55111957-55111976 | Msa0458920:intron | 25.0% |
| ! | TGCTTATGTATAGACTATAT+GGG | - | chr3_3:55112326-55112345 | Msa0458920:intron | 25.0% |
| !! | GTTTCTCTAATAGTTTTTCA+AGG | + | chr3_3:55112551-55112570 | None:intergenic | 25.0% |
| ! | ATAAGTTGTTTATCCAAACA+TGG | - | chr3_3:55112867-55112886 | Msa0458920:intron | 25.0% |
| ! | TCAAATATGCCAATTTAAAC+AGG | - | chr3_3:55113005-55113024 | Msa0458920:intron | 25.0% |
| ! | CAATGTTGATGTATACATAT+TGG | - | chr3_3:55113045-55113064 | Msa0458920:intron | 25.0% |
| !! | TGTTTTCTAAATTCATGTTG+AGG | - | chr3_3:55113070-55113089 | Msa0458920:intron | 25.0% |
| ! | AAACTCATAATCTTACTTTG+AGG | + | chr3_3:55113331-55113350 | None:intergenic | 25.0% |
| ! | ATTGGCAATGTATTTCTTAT+AGG | + | chr3_3:55113606-55113625 | None:intergenic | 25.0% |
| ! | ATATATTGTCATGATTATGC+AGG | - | chr3_3:55113784-55113803 | Msa0458920:intron | 25.0% |
| !! | AACAATTTTACATGACATGT+GGG | + | chr3_3:55113825-55113844 | None:intergenic | 25.0% |
| !! | TAACAATTTTACATGACATG+TGG | + | chr3_3:55113826-55113845 | None:intergenic | 25.0% |
| !!! | TATGATTTTGAAGAAGGAAA+AGG | - | chr3_3:55113933-55113952 | Msa0458920:intron | 25.0% |
| ! | AAAACATTCAAAGTTACTCT+GGG | + | chr3_3:55114076-55114095 | None:intergenic | 25.0% |
| !!! | TGAACATCATTTTAACATCA+AGG | + | chr3_3:55114385-55114404 | None:intergenic | 25.0% |
| ! | ATGTAAACCAGTTATTATAC+TGG | + | chr3_3:55114480-55114499 | None:intergenic | 25.0% |
| ! | TTACTCTAAACTTACTTCTT+TGG | - | chr3_3:55114676-55114695 | Msa0458920:intron | 25.0% |
| ! | TACTCTAAACTTACTTCTTT+GGG | - | chr3_3:55114677-55114696 | Msa0458920:intron | 25.0% |
| ! | ATGACTATCTTAATATACAC+AGG | - | chr3_3:55114772-55114791 | Msa0458920:intron | 25.0% |
| ! | ATAATAATGACAAACAGTCT+CGG | + | chr3_3:55114997-55115016 | None:intergenic | 25.0% |
| ! | ATAGATTTACAAGTGCATAT+CGG | + | chr3_3:55115196-55115215 | None:intergenic | 25.0% |
| ! | TTTCTTCAACAAATGATCAA+TGG | - | chr3_3:55115257-55115276 | Msa0458920:intron | 25.0% |
| ! | TCTTTCAAAAGATATTAGGT+AGG | + | chr3_3:55115465-55115484 | None:intergenic | 25.0% |
| ! | GTTTCAGTATCAATCAAAAA+AGG | + | chr3_3:55115501-55115520 | None:intergenic | 25.0% |
| ! | TATGAAAACACAAGAAAATC+AGG | + | chr3_3:55115563-55115582 | None:intergenic | 25.0% |
| ! | ATCATAGGATAGGATAAAAT+TGG | - | chr3_3:55115804-55115823 | Msa0458920:CDS | 25.0% |
| ! | AAGCAAATTAAACAGATTAG+TGG | + | chr3_3:55115847-55115866 | None:intergenic | 25.0% |
| TAAGATGAATCAGAAAGAGT+GGG | + | chr3_3:55111568-55111587 | None:intergenic | 30.0% | |
| !!! | TGAATGATTGTTTTTTGCTG+CGG | + | chr3_3:55111635-55111654 | None:intergenic | 30.0% |
| TAGTTTAGAGATGAGATTGT+TGG | + | chr3_3:55111676-55111695 | None:intergenic | 30.0% | |
| AAAGATAAAACATGTACGTG+AGG | + | chr3_3:55111933-55111952 | None:intergenic | 30.0% | |
| !!! | TTTTTTGGGTTTTGTGTTTC+TGG | - | chr3_3:55112030-55112049 | Msa0458920:intron | 30.0% |
| !!! | TTTTTGGGTTTTGTGTTTCT+GGG | - | chr3_3:55112031-55112050 | Msa0458920:intron | 30.0% |
| ! | TGGATCTTCGTGATAATTTT+AGG | - | chr3_3:55112175-55112194 | Msa0458920:intron | 30.0% |
| GTGCTTATGTATAGACTATA+TGG | - | chr3_3:55112325-55112344 | Msa0458920:intron | 30.0% | |
| ATAGACTATATGGGTATGTT+TGG | - | chr3_3:55112335-55112354 | Msa0458920:intron | 30.0% | |
| !! | ATAGGCTTTGGATATTGTTT+GGG | - | chr3_3:55112386-55112405 | Msa0458920:intron | 30.0% |
| ATAAAACAGCATACGATGTT+TGG | - | chr3_3:55112416-55112435 | Msa0458920:intron | 30.0% | |
| !! | GTTGTTTTCTTAAGCAATCT+TGG | + | chr3_3:55112736-55112755 | None:intergenic | 30.0% |
| ACATTGAAAGTAATCGAGTA+AGG | + | chr3_3:55113031-55113050 | None:intergenic | 30.0% | |
| ! | TGCTAAATACACTTTTCAGT+TGG | - | chr3_3:55113393-55113412 | Msa0458920:intron | 30.0% |
| ! | GTGTTTTCTTTATGATGCTT+TGG | - | chr3_3:55113460-55113479 | Msa0458920:intron | 30.0% |
| CAATTTATAGAGAGTTGCAT+AGG | - | chr3_3:55113494-55113513 | Msa0458920:intron | 30.0% | |
| TAAACTACCAGGTCAATTAT+AGG | + | chr3_3:55113583-55113602 | None:intergenic | 30.0% | |
| TTTCTTATAGGTAAACTACC+AGG | + | chr3_3:55113594-55113613 | None:intergenic | 30.0% | |
| CGTAGAAATGAACTGTATTT+AGG | - | chr3_3:55113627-55113646 | Msa0458920:intron | 30.0% | |
| TGTATACAAAACCATAGCAT+CGG | + | chr3_3:55113759-55113778 | None:intergenic | 30.0% | |
| CATGTAAAATTGTTAGTACC+AGG | - | chr3_3:55113831-55113850 | Msa0458920:intron | 30.0% | |
| ACTGTACTAATATAGTAACC+TGG | + | chr3_3:55113852-55113871 | None:intergenic | 30.0% | |
| TGATAAACCTATACGCATAT+AGG | - | chr3_3:55113871-55113890 | Msa0458920:intron | 30.0% | |
| CAAAACATTCAAAGTTACTC+TGG | + | chr3_3:55114077-55114096 | None:intergenic | 30.0% | |
| ! | CAGAGTAACTTTGAATGTTT+TGG | - | chr3_3:55114075-55114094 | Msa0458920:intron | 30.0% |
| !! | GTTTTGGATAATTTTCTTCC+AGG | - | chr3_3:55114091-55114110 | Msa0458920:intron | 30.0% |
| GTACAATGAATCCTACTTAA+AGG | - | chr3_3:55114124-55114143 | Msa0458920:intron | 30.0% | |
| ATTGGATCAAATATTTGGCA+TGG | + | chr3_3:55114155-55114174 | None:intergenic | 30.0% | |
| ATGGGATTGGATCAAATATT+TGG | + | chr3_3:55114160-55114179 | None:intergenic | 30.0% | |
| ATATTTGATCCAATCCCATT+AGG | - | chr3_3:55114161-55114180 | Msa0458920:CDS | 30.0% | |
| !! | GTTGAAAGATGTTGATTCAA+TGG | - | chr3_3:55114205-55114224 | Msa0458920:CDS | 30.0% |
| TCATATAACATTGTACCTTC+AGG | + | chr3_3:55114236-55114255 | None:intergenic | 30.0% | |
| TGATCAATTGCAATAAGAAC+AGG | + | chr3_3:55114347-55114366 | None:intergenic | 30.0% | |
| GTAAGTTCTTTAGCATGTAT+TGG | + | chr3_3:55114544-55114563 | None:intergenic | 30.0% | |
| ACATGCTAAAGAACTTACAA+TGG | - | chr3_3:55114546-55114565 | Msa0458920:intron | 30.0% | |
| ! | AGTAAGCAGAAAGCATATAA+TGG | + | chr3_3:55114822-55114841 | None:intergenic | 30.0% |
| AATGATGCATGATGATATGA+TGG | - | chr3_3:55114866-55114885 | Msa0458920:intron | 30.0% | |
| TATAAGTAATGCTATCAACC+TGG | + | chr3_3:55115049-55115068 | None:intergenic | 30.0% | |
| TTACACCTGCTCTTAATATT+TGG | - | chr3_3:55115352-55115371 | Msa0458920:CDS | 30.0% | |
| AACTAGGATCTATCATACAT+TGG | - | chr3_3:55115417-55115436 | Msa0458920:intron | 30.0% | |
| ! | CTTGTGTTTTCATATTTGAC+AGG | - | chr3_3:55115569-55115588 | Msa0458920:CDS | 30.0% |
| ! | TTTTCATATTTGACAGGCAA+AGG | - | chr3_3:55115575-55115594 | Msa0458920:CDS | 30.0% |
| AAGCATTCACAGAAGATAAT+TGG | - | chr3_3:55115611-55115630 | Msa0458920:CDS | 30.0% | |
| !! | TACTTTTTATGCAATGGGAA+TGG | - | chr3_3:55115643-55115662 | Msa0458920:CDS | 30.0% |
| GTCATGAGCTATATTATCAT+AGG | - | chr3_3:55115789-55115808 | Msa0458920:CDS | 30.0% | |
| GAGCTATATTATCATAGGAT+AGG | - | chr3_3:55115794-55115813 | Msa0458920:CDS | 30.0% | |
| CTAAGATGAATCAGAAAGAG+TGG | + | chr3_3:55111569-55111588 | None:intergenic | 35.0% | |
| ! | TTGTTGGAGTGAGGTTTTTA+AGG | + | chr3_3:55111660-55111679 | None:intergenic | 35.0% |
| TTGAGCTTATCTACTGACAT+AGG | - | chr3_3:55112368-55112387 | Msa0458920:intron | 35.0% | |
| TTATCTACTGACATAGGCTT+TGG | - | chr3_3:55112374-55112393 | Msa0458920:intron | 35.0% | |
| !! | CATAGGCTTTGGATATTGTT+TGG | - | chr3_3:55112385-55112404 | Msa0458920:intron | 35.0% |
| !! | TAGGCTTTGGATATTGTTTG+GGG | - | chr3_3:55112387-55112406 | Msa0458920:intron | 35.0% |
| GTTTGGTAGAAACTAGACTT+AGG | - | chr3_3:55112433-55112452 | Msa0458920:intron | 35.0% | |
| AAACTAGACTTAGGTGGTTT+GGG | - | chr3_3:55112442-55112461 | Msa0458920:intron | 35.0% | |
| TAGGAGAGTAGTTTAGATAG+AGG | - | chr3_3:55112497-55112516 | Msa0458920:CDS | 35.0% | |
| AGGAGAGTAGTTTAGATAGA+GGG | - | chr3_3:55112498-55112517 | Msa0458920:CDS | 35.0% | |
| ! | CAATGAGTTGAAGAAAGACA+TGG | - | chr3_3:55112592-55112611 | Msa0458920:CDS | 35.0% |
| AAACCTTATCTCACTAAGTG+GGG | + | chr3_3:55112662-55112681 | None:intergenic | 35.0% | |
| CAAACCTTATCTCACTAAGT+GGG | + | chr3_3:55112663-55112682 | None:intergenic | 35.0% | |
| ! | ATTTTGTAGGGGTCAAAGTT+AGG | - | chr3_3:55113114-55113133 | Msa0458920:CDS | 35.0% |
| !!! | AGGAAGCAAGTTGTTTTAGA+TGG | - | chr3_3:55113134-55113153 | Msa0458920:CDS | 35.0% |
| ! | ACACTTTTCAGTTGGAAGTT+CGG | - | chr3_3:55113401-55113420 | Msa0458920:intron | 35.0% |
| TTATAGAGAGTTGCATAGGA+TGG | - | chr3_3:55113498-55113517 | Msa0458920:intron | 35.0% | |
| GAGTTTACCTATAATTGACC+TGG | - | chr3_3:55113573-55113592 | Msa0458920:intron | 35.0% | |
| TACAGTTCATTTCTACGCAT+TGG | + | chr3_3:55113624-55113643 | None:intergenic | 35.0% | |
| ! | TCTTTCTTTTTCTGCCTACT+TGG | - | chr3_3:55113715-55113734 | Msa0458920:intron | 35.0% |
| AATCAACATTCTCTCCAAGT+AGG | + | chr3_3:55113732-55113751 | None:intergenic | 35.0% | |
| CATTGTACTTCATGAAATCC+TGG | + | chr3_3:55114112-55114131 | None:intergenic | 35.0% | |
| AGGTACAATGTTATATGAGC+TGG | - | chr3_3:55114238-55114257 | Msa0458920:CDS | 35.0% | |
| GTTTACATTCAGTGAGTATG+AGG | - | chr3_3:55114492-55114511 | Msa0458920:intron | 35.0% | |
| CTGTTACAATTCGTTCTTGT+CGG | - | chr3_3:55114518-55114537 | Msa0458920:intron | 35.0% | |
| !! | AAACAGAGAGCTTTATTACG+TGG | - | chr3_3:55114740-55114759 | Msa0458920:intron | 35.0% |
| ATGCATGATGATATGATGGT+AGG | - | chr3_3:55114870-55114889 | Msa0458920:intron | 35.0% | |
| TGCATGATGATATGATGGTA+GGG | - | chr3_3:55114871-55114890 | Msa0458920:intron | 35.0% | |
| AAAGCTTCGTAAAGACTTAC+CGG | - | chr3_3:55114920-55114939 | Msa0458920:intron | 35.0% | |
| AGAGACCAAATATTAAGAGC+AGG | + | chr3_3:55115360-55115379 | None:intergenic | 35.0% | |
| TATCTTCTGTGAATGCTTCA+CGG | + | chr3_3:55115609-55115628 | None:intergenic | 35.0% | |
| ACAGTCAGAACACATTTCAT+TGG | + | chr3_3:55115740-55115759 | None:intergenic | 35.0% | |
| ! | GCTTTTAATCTTGTTCGCAA+AGG | - | chr3_3:55115863-55115882 | Msa0458920:five_prime_UTR | 35.0% |
| !! | TGTTGGCTTTGTTGGAGATT+TGG | + | chr3_3:55111704-55111723 | None:intergenic | 40.0% |
| !!! | GTTTTGGAAGTGGGTTTTGT+GGG | + | chr3_3:55111730-55111749 | None:intergenic | 40.0% |
| TTGTTCGTCGAAGAAGATGT+CGG | + | chr3_3:55111779-55111798 | None:intergenic | 40.0% | |
| !!! | GAGTGATGGGTTTTTTTCGT+CGG | + | chr3_3:55111824-55111843 | None:intergenic | 40.0% |
| AAAAACCCATCACTCAACGT+CGG | - | chr3_3:55111829-55111848 | Msa0458920:CDS | 40.0% | |
| GAGCTTAGATAAGGAAGAAG+CGG | + | chr3_3:55111881-55111900 | None:intergenic | 40.0% | |
| ! | GTTGTTGGTGAGCTTAGATA+AGG | + | chr3_3:55111890-55111909 | None:intergenic | 40.0% |
| ! | ATTGTGGCATTTTGTCGAAC+AGG | - | chr3_3:55111973-55111992 | Msa0458920:intron | 40.0% |
| !! | AGGCTTTGGATATTGTTTGG+GGG | - | chr3_3:55112388-55112407 | Msa0458920:intron | 40.0% |
| TGGTAGAAACTAGACTTAGG+TGG | - | chr3_3:55112436-55112455 | Msa0458920:intron | 40.0% | |
| GAAACTAGACTTAGGTGGTT+TGG | - | chr3_3:55112441-55112460 | Msa0458920:intron | 40.0% | |
| GACCTGTGAATGTTGTAGTT+AGG | - | chr3_3:55112478-55112497 | Msa0458920:CDS | 40.0% | |
| CTCCTAACTACAACATTCAC+AGG | + | chr3_3:55112483-55112502 | None:intergenic | 40.0% | |
| GGAGAGTAGTTTAGATAGAG+GGG | - | chr3_3:55112499-55112518 | Msa0458920:CDS | 40.0% | |
| GAGAGTAGTTTAGATAGAGG+GGG | - | chr3_3:55112500-55112519 | Msa0458920:CDS | 40.0% | |
| CCAAACCTTATCTCACTAAG+TGG | + | chr3_3:55112664-55112683 | None:intergenic | 40.0% | |
| CCACTTAGTGAGATAAGGTT+TGG | - | chr3_3:55112661-55112680 | Msa0458920:intron | 40.0% | |
| TCACAAGCGCTTAAATCAGT+AGG | - | chr3_3:55112977-55112996 | Msa0458920:intron | 40.0% | |
| CGAGTAAGGCCTGTTTAAAT+TGG | + | chr3_3:55113017-55113036 | None:intergenic | 40.0% | |
| TTAGATGGTCCTGTTAGTTG+TGG | - | chr3_3:55113149-55113168 | Msa0458920:CDS | 40.0% | |
| TAGATGGTCCTGTTAGTTGT+GGG | - | chr3_3:55113150-55113169 | Msa0458920:CDS | 40.0% | |
| ATGTTCCTAGCGCAAAAGAA+TGG | - | chr3_3:55113234-55113253 | Msa0458920:CDS | 40.0% | |
| TTCTATAAGCATCCGCAAAC+AGG | - | chr3_3:55113272-55113291 | Msa0458920:CDS | 40.0% | |
| TCTATAAGCATCCGCAAACA+GGG | - | chr3_3:55113273-55113292 | Msa0458920:CDS | 40.0% | |
| !!! | TTGGAAGTTCGGTTTTGAGA+AGG | - | chr3_3:55113412-55113431 | Msa0458920:intron | 40.0% |
| TAGGTAAACTCCAATGACAC+TGG | + | chr3_3:55113564-55113583 | None:intergenic | 40.0% | |
| !! | GTTGATTTTCACCGATGCTA+TGG | - | chr3_3:55113745-55113764 | Msa0458920:intron | 40.0% |
| GATTCAATGGCAATTCCTGA+AGG | - | chr3_3:55114218-55114237 | Msa0458920:CDS | 40.0% | |
| CAATGTTATATGAGCTGGTG+AGG | - | chr3_3:55114243-55114262 | Msa0458920:CDS | 40.0% | |
| CCAGTTATTATACTGGAGAC+AGG | + | chr3_3:55114473-55114492 | None:intergenic | 40.0% | |
| CCTGTCTCCAGTATAATAAC+TGG | - | chr3_3:55114470-55114489 | Msa0458920:intron | 40.0% | |
| CGACAAGAACGAATTGTAAC+AGG | + | chr3_3:55114520-55114539 | None:intergenic | 40.0% | |
| ! | ACAGGTCAACTGTTTGACTT+TGG | - | chr3_3:55114790-55114809 | Msa0458920:intron | 40.0% |
| TGCTTTCTGCTTACTATTGC+AGG | - | chr3_3:55114827-55114846 | Msa0458920:intron | 40.0% | |
| ! | TATTGCAGGTGAAGGCTTTT+AGG | - | chr3_3:55114841-55114860 | Msa0458920:intron | 40.0% |
| GCATGATGATATGATGGTAG+GGG | - | chr3_3:55114872-55114891 | Msa0458920:intron | 40.0% | |
| TTCTCTCATTCAACAGCTGT+AGG | - | chr3_3:55114897-55114916 | Msa0458920:intron | 40.0% | |
| TAAAGACTTACCGGATGTAC+CGG | - | chr3_3:55114929-55114948 | Msa0458920:intron | 40.0% | |
| GTTTCCTCGATACAGTTTAG+AGG | - | chr3_3:55114968-55114987 | Msa0458920:intron | 40.0% | |
| TGCTATCAACCTGGTAAACA+GGG | + | chr3_3:55115040-55115059 | None:intergenic | 40.0% | |
| ATGCTATCAACCTGGTAAAC+AGG | + | chr3_3:55115041-55115060 | None:intergenic | 40.0% | |
| AAGCAGACACAGAATTAGAC+TGG | + | chr3_3:55115131-55115150 | None:intergenic | 40.0% | |
| ATGGGAATGGAACAGAAATG+AGG | - | chr3_3:55115656-55115675 | Msa0458920:CDS | 40.0% | |
| TGGGAATGGAACAGAAATGA+GGG | - | chr3_3:55115657-55115676 | Msa0458920:CDS | 40.0% | |
| AGCTACGAAACTGGAAGAAG+AGG | + | chr3_3:55111524-55111543 | None:intergenic | 45.0% | |
| ATGGAAGAGAGCTACGAAAC+TGG | + | chr3_3:55111533-55111552 | None:intergenic | 45.0% | |
| ! | GAGTGGGAGAGATTTTGCTA+TGG | + | chr3_3:55111552-55111571 | None:intergenic | 45.0% |
| GAGATGAGATTGTTGGAGTG+AGG | + | chr3_3:55111669-55111688 | None:intergenic | 45.0% | |
| !!! | GTGGGTTTTGTTGGCTTTGT+TGG | + | chr3_3:55111712-55111731 | None:intergenic | 45.0% |
| !! | GTGGGTTTTGTGGGTTTTGT+TGG | + | chr3_3:55111721-55111740 | None:intergenic | 45.0% |
| !!! | GGTTTTGGAAGTGGGTTTTG+TGG | + | chr3_3:55111731-55111750 | None:intergenic | 45.0% |
| !!! | TGATGGGTTTTTTTCGTCGG+CGG | + | chr3_3:55111821-55111840 | None:intergenic | 45.0% |
| ! | GTAAGTGCAGGTATCGTTGT+TGG | + | chr3_3:55111905-55111924 | None:intergenic | 45.0% |
| !!! | TGGGTTTTGTGTTTCTGGGT+TGG | - | chr3_3:55112035-55112054 | Msa0458920:intron | 45.0% |
| !!! | GTTGGCTTTGTTTTCCAGGA+AGG | - | chr3_3:55112053-55112072 | Msa0458920:intron | 45.0% |
| !!! | GCTTTGTTTTCCAGGAAGGA+GGG | - | chr3_3:55112057-55112076 | Msa0458920:intron | 45.0% |
| !!! | TTGGATGCTGTTTTGCCTGA+AGG | - | chr3_3:55112081-55112100 | Msa0458920:intron | 45.0% |
| !!! | TGGATGCTGTTTTGCCTGAA+GGG | - | chr3_3:55112082-55112101 | Msa0458920:intron | 45.0% |
| AACTCCTTCTCCATACCCAT+TGG | + | chr3_3:55112111-55112130 | None:intergenic | 45.0% | |
| GGGTATGGAGAAGGAGTTTA+AGG | - | chr3_3:55112113-55112132 | Msa0458920:intron | 45.0% | |
| ! | GCTTGTTCGTCAGAGCTTTT+TGG | - | chr3_3:55112155-55112174 | Msa0458920:intron | 45.0% |
| AAAAACGCACCTTTACCGTG+AGG | + | chr3_3:55112228-55112247 | None:intergenic | 45.0% | |
| GGGTCAAATCACTCGAAGTA+GGG | - | chr3_3:55112520-55112539 | Msa0458920:CDS | 45.0% | |
| GGTCAAATCACTCGAAGTAG+GGG | - | chr3_3:55112521-55112540 | Msa0458920:CDS | 45.0% | |
| ACGTGAATCAAACGACGTCA+TGG | + | chr3_3:55112633-55112652 | None:intergenic | 45.0% | |
| CTTATCTCACTAAGTGGGGT+CGG | + | chr3_3:55112658-55112677 | None:intergenic | 45.0% | |
| ATGCTCTTCCCACAACTAAC+AGG | + | chr3_3:55113161-55113180 | None:intergenic | 45.0% | |
| GCTTGCAATGCTTGTTCAGT+GGG | - | chr3_3:55113184-55113203 | Msa0458920:CDS | 45.0% | |
| ! | TGAGTCCATTCTTTTGCGCT+AGG | + | chr3_3:55113242-55113261 | None:intergenic | 45.0% |
| ! | AGCGCAAAAGAATGGACTCA+TGG | - | chr3_3:55113242-55113261 | Msa0458920:CDS | 45.0% |
| ! | GCAAAAGAATGGACTCATGG+AGG | - | chr3_3:55113245-55113264 | Msa0458920:CDS | 45.0% |
| TTATTATCGCTGCTCGTAGC+TGG | - | chr3_3:55113533-55113552 | Msa0458920:intron | 45.0% | |
| GTCATGATTATGCAGGCTAG+AGG | - | chr3_3:55113791-55113810 | Msa0458920:intron | 45.0% | |
| CTAGCTGCCTATATGCGTAT+AGG | + | chr3_3:55113881-55113900 | None:intergenic | 45.0% | |
| GCATGGCAGTTCCTTTAAGT+AGG | + | chr3_3:55114138-55114157 | None:intergenic | 45.0% | |
| TGATCCAATCCCATTAGGTG+AGG | - | chr3_3:55114166-55114185 | Msa0458920:CDS | 45.0% | |
| GATCCAATCCCATTAGGTGA+GGG | - | chr3_3:55114167-55114186 | Msa0458920:CDS | 45.0% | |
| TTATATGAGCTGGTGAGGAC+TGG | - | chr3_3:55114248-55114267 | Msa0458920:CDS | 45.0% | |
| GAACAAACACATGCAGCTGT+TGG | - | chr3_3:55114275-55114294 | Msa0458920:CDS | 45.0% | |
| TTGGAGTGGTAGTTCGTTTG+AGG | - | chr3_3:55114294-55114313 | Msa0458920:CDS | 45.0% | |
| ! | GGTCAACTGTTTGACTTTGG+TGG | - | chr3_3:55114793-55114812 | Msa0458920:intron | 45.0% |
| CTGCTTACTATTGCAGGTGA+AGG | - | chr3_3:55114833-55114852 | Msa0458920:intron | 45.0% | |
| AACATAGCACGAGCATCTAC+CGG | + | chr3_3:55114951-55114970 | None:intergenic | 45.0% | |
| GCTTCCTCTAAACTGTATCG+AGG | + | chr3_3:55114975-55114994 | None:intergenic | 45.0% | |
| TTACACAGTCCCTGTTTACC+AGG | - | chr3_3:55115028-55115047 | Msa0458920:intron | 45.0% | |
| GGGAATGGAACAGAAATGAG+GGG | - | chr3_3:55115658-55115677 | Msa0458920:CDS | 45.0% | |
| GGAATGGAACAGAAATGAGG+GGG | - | chr3_3:55115659-55115678 | Msa0458920:CDS | 45.0% | |
| GATGTCTGTCATCGCATGAA+AGG | + | chr3_3:55115691-55115710 | None:intergenic | 45.0% | |
| !!! | TTATTTGTATATTTAATTTT+TGG | - | chr3_3:55113968-55113987 | Msa0458920:intron | 5.0% |
| !!! | TGTTTTTTTTTTTTTTTTTT+TGG | + | chr3_3:55114725-55114744 | None:intergenic | 5.0% |
| TTCGTCGAAGAAGATGTCGG+CGG | + | chr3_3:55111776-55111795 | None:intergenic | 50.0% | |
| AGGAAGAAGCGGAAGTGAAG+AGG | + | chr3_3:55111870-55111889 | None:intergenic | 50.0% | |
| CGTGAGGTTAACGTAAGTGC+AGG | + | chr3_3:55111917-55111936 | None:intergenic | 50.0% | |
| !!! | CTGGGTTGGCTTTGTTTTCC+AGG | - | chr3_3:55112049-55112068 | Msa0458920:intron | 50.0% |
| !!! | GGCTTTGTTTTCCAGGAAGG+AGG | - | chr3_3:55112056-55112075 | Msa0458920:intron | 50.0% |
| ! | GTTTTCCAGGAAGGAGGGAT+TGG | - | chr3_3:55112062-55112081 | Msa0458920:intron | 50.0% |
| TTTGCCTGAAGGGTTGCCAA+TGG | - | chr3_3:55112092-55112111 | Msa0458920:intron | 50.0% | |
| TTGCCTGAAGGGTTGCCAAT+GGG | - | chr3_3:55112093-55112112 | Msa0458920:intron | 50.0% | |
| ATACCCATTGGCAACCCTTC+AGG | + | chr3_3:55112099-55112118 | None:intergenic | 50.0% | |
| TGAAGGGTTGCCAATGGGTA+TGG | - | chr3_3:55112098-55112117 | Msa0458920:intron | 50.0% | |
| GTTGCCAATGGGTATGGAGA+AGG | - | chr3_3:55112104-55112123 | Msa0458920:intron | 50.0% | |
| ! | GTGTTGTTGATCCGCCAATG+TGG | - | chr3_3:55112199-55112218 | Msa0458920:intron | 50.0% |
| GGGGTCAAATCACTCGAAGT+AGG | - | chr3_3:55112519-55112538 | Msa0458920:CDS | 50.0% | |
| CGACCCCACTTAGTGAGATA+AGG | - | chr3_3:55112656-55112675 | Msa0458920:intron | 50.0% | |
| CGCTTGCAATGCTTGTTCAG+TGG | - | chr3_3:55113183-55113202 | Msa0458920:CDS | 50.0% | |
| !! | GTTCAGTGGGCTAGAGAAGA+AGG | - | chr3_3:55113197-55113216 | Msa0458920:CDS | 50.0% |
| !! | AGTGGGCTAGAGAAGAAGGT+TGG | - | chr3_3:55113201-55113220 | Msa0458920:CDS | 50.0% |
| ! | GGCTAGAGAAGAAGGTTGGT+TGG | - | chr3_3:55113205-55113224 | Msa0458920:CDS | 50.0% |
| GTATCCCATAGCCCTGTTTG+CGG | + | chr3_3:55113287-55113306 | None:intergenic | 50.0% | |
| ! | CTTTGAGGACATTCTCAGCC+TGG | + | chr3_3:55113316-55113335 | None:intergenic | 50.0% |
| GCTGGTAACTCCAGTGTCAT+TGG | - | chr3_3:55113551-55113570 | Msa0458920:intron | 50.0% | |
| CGTTCTGTTACCAGCATCCT+CGG | - | chr3_3:55114043-55114062 | Msa0458920:intron | 50.0% | |
| TTACTCTGGGTAATGAGCCG+AGG | + | chr3_3:55114063-55114082 | None:intergenic | 50.0% | |
| AACACATGCAGCTGTTGGAG+TGG | - | chr3_3:55114280-55114299 | Msa0458920:CDS | 50.0% | |
| !!! | GTGGCAGGGGTTTTGGAAGT+GGG | + | chr3_3:55111739-55111758 | None:intergenic | 55.0% |
| !!! | GGTTTTTTTCGTCGGCGGTG+AGG | + | chr3_3:55111816-55111835 | None:intergenic | 55.0% |
| ! | AAGCGGAAGTGAAGAGGCGT+CGG | + | chr3_3:55111864-55111883 | None:intergenic | 55.0% |
| AGCATCCAATCCCTCCTTCC+TGG | + | chr3_3:55112070-55112089 | None:intergenic | 55.0% | |
| TTACCGTGAGGCGACCACAT+TGG | + | chr3_3:55112216-55112235 | None:intergenic | 55.0% | |
| ATGTGGTCGCCTCACGGTAA+AGG | - | chr3_3:55112216-55112235 | Msa0458920:intron | 55.0% | |
| AGCATCCGCAAACAGGGCTA+TGG | - | chr3_3:55113279-55113298 | Msa0458920:CDS | 55.0% | |
| GCATCCGCAAACAGGGCTAT+GGG | - | chr3_3:55113280-55113299 | Msa0458920:CDS | 55.0% | |
| GCTATGGGATACACCTGTCC+AGG | - | chr3_3:55113295-55113314 | Msa0458920:CDS | 55.0% | |
| AGGACATTCTCAGCCTGGAC+AGG | + | chr3_3:55113311-55113330 | None:intergenic | 55.0% | |
| GCACCCTCACCTAATGGGAT+TGG | + | chr3_3:55114173-55114192 | None:intergenic | 55.0% | |
| ! | ATCCCATTAGGTGAGGGTGC+TGG | - | chr3_3:55114173-55114192 | Msa0458920:CDS | 55.0% |
| CTCCAGCACCCTCACCTAAT+GGG | + | chr3_3:55114178-55114197 | None:intergenic | 55.0% | |
| ACTCCAGCACCCTCACCTAA+TGG | + | chr3_3:55114179-55114198 | None:intergenic | 55.0% | |
| !! | TTAGGTGAGGGTGCTGGAGT+TGG | - | chr3_3:55114179-55114198 | Msa0458920:CDS | 55.0% |
| CGAGCATCTACCGGTACATC+CGG | + | chr3_3:55114942-55114961 | None:intergenic | 55.0% | |
| !!! | GGTGGCAGGGGTTTTGGAAG+TGG | + | chr3_3:55111740-55111759 | None:intergenic | 60.0% |
| GTCGAAGAAGATGTCGGCGG+TGG | + | chr3_3:55111773-55111792 | None:intergenic | 60.0% | |
| TTTCGTCGGCGGTGAGGTTG+CGG | + | chr3_3:55111810-55111829 | None:intergenic | 60.0% | |
| TGGGGCCGACGTTGAGTGAT+GGG | + | chr3_3:55111837-55111856 | None:intergenic | 60.0% | |
| TTGGGGCCGACGTTGAGTGA+TGG | + | chr3_3:55111838-55111857 | None:intergenic | 60.0% | |
| TCACTCAACGTCGGCCCCAA+TGG | - | chr3_3:55111838-55111857 | Msa0458920:CDS | 60.0% | |
| !! | TGAAGAGGCGTCGGCCATTG+GGG | + | chr3_3:55111855-55111874 | None:intergenic | 60.0% |
| !! | GTGAAGAGGCGTCGGCCATT+GGG | + | chr3_3:55111856-55111875 | None:intergenic | 60.0% |
| !! | AGTGAAGAGGCGTCGGCCAT+TGG | + | chr3_3:55111857-55111876 | None:intergenic | 60.0% |
| GGGTAATGAGCCGAGGATGC+TGG | + | chr3_3:55114056-55114075 | None:intergenic | 60.0% | |
| !! | GTGAGGGTGCTGGAGTTGGT+TGG | - | chr3_3:55114183-55114202 | Msa0458920:CDS | 60.0% |
| GAAGATGTCGGCGGTGGCGT+TGG | + | chr3_3:55111767-55111786 | None:intergenic | 65.0% | |
| CCGTGAGGCGACCACATTGG+CGG | + | chr3_3:55112213-55112232 | None:intergenic | 65.0% | |
| CCGCCAATGTGGTCGCCTCA+CGG | - | chr3_3:55112210-55112229 | Msa0458920:intron | 65.0% | |
| !! | GGCGGTGGTGGCAGGGGTTT+TGG | + | chr3_3:55111746-55111765 | None:intergenic | 70.0% |
| !! | TGGCGTTGGCGGTGGTGGCA+GGG | + | chr3_3:55111753-55111772 | None:intergenic | 70.0% |
| ! | GATGTCGGCGGTGGCGTTGG+CGG | + | chr3_3:55111764-55111783 | None:intergenic | 70.0% |
| !! | GGCGTTGGCGGTGGTGGCAG+GGG | + | chr3_3:55111752-55111771 | None:intergenic | 75.0% |
| !! | GTGGCGTTGGCGGTGGTGGC+AGG | + | chr3_3:55111754-55111773 | None:intergenic | 75.0% |
| !!! | GGCGGTGGCGTTGGCGGTGG+TGG | + | chr3_3:55111758-55111777 | None:intergenic | 80.0% |
| !!! | GTCGGCGGTGGCGTTGGCGG+TGG | + | chr3_3:55111761-55111780 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 55111493 | 55115973 | 55111493 | ID=Msa0458920;Name=Msa0458920 |
| chr3_3 | mRNA | 55111493 | 55115973 | 55111493 | ID=Msa0458920-mRNA-1;Parent=Msa0458920;Name=Msa0458920-mRNA-1;_AED=0.07;_eAED=0.07;_QI=117|0.83|0.85|1|1|1|7|271|430 |
| chr3_3 | exon | 55111493 | 55111875 | 55111493 | ID=Msa0458920-mRNA-1:exon:10914;Parent=Msa0458920-mRNA-1 |
| chr3_3 | exon | 55112445 | 55112617 | 55112445 | ID=Msa0458920-mRNA-1:exon:10913;Parent=Msa0458920-mRNA-1 |
| chr3_3 | exon | 55112899 | 55112985 | 55112899 | ID=Msa0458920-mRNA-1:exon:10912;Parent=Msa0458920-mRNA-1 |
| chr3_3 | exon | 55113099 | 55113353 | 55113099 | ID=Msa0458920-mRNA-1:exon:10911;Parent=Msa0458920-mRNA-1 |
| chr3_3 | exon | 55114132 | 55114343 | 55114132 | ID=Msa0458920-mRNA-1:exon:10910;Parent=Msa0458920-mRNA-1 |
| chr3_3 | exon | 55115268 | 55115395 | 55115268 | ID=Msa0458920-mRNA-1:exon:10909;Parent=Msa0458920-mRNA-1 |
| chr3_3 | exon | 55115531 | 55115973 | 55115531 | ID=Msa0458920-mRNA-1:exon:10908;Parent=Msa0458920-mRNA-1 |
| chr3_3 | five_prime_UTR | 55115857 | 55115973 | 55115857 | ID=Msa0458920-mRNA-1:five_prime_utr;Parent=Msa0458920-mRNA-1 |
| chr3_3 | CDS | 55115531 | 55115856 | 55115531 | ID=Msa0458920-mRNA-1:cds;Parent=Msa0458920-mRNA-1 |
| chr3_3 | CDS | 55115268 | 55115395 | 55115268 | ID=Msa0458920-mRNA-1:cds;Parent=Msa0458920-mRNA-1 |
| chr3_3 | CDS | 55114132 | 55114343 | 55114132 | ID=Msa0458920-mRNA-1:cds;Parent=Msa0458920-mRNA-1 |
| chr3_3 | CDS | 55113099 | 55113353 | 55113099 | ID=Msa0458920-mRNA-1:cds;Parent=Msa0458920-mRNA-1 |
| chr3_3 | CDS | 55112899 | 55112985 | 55112899 | ID=Msa0458920-mRNA-1:cds;Parent=Msa0458920-mRNA-1 |
| chr3_3 | CDS | 55112445 | 55112617 | 55112445 | ID=Msa0458920-mRNA-1:cds;Parent=Msa0458920-mRNA-1 |
| chr3_3 | CDS | 55111764 | 55111875 | 55111764 | ID=Msa0458920-mRNA-1:cds;Parent=Msa0458920-mRNA-1 |
| chr3_3 | three_prime_UTR | 55111493 | 55111763 | 55111493 | ID=Msa0458920-mRNA-1:three_prime_utr;Parent=Msa0458920-mRNA-1 |
| Gene Sequence |
| Protein sequence |
