AlfalfaGEDB | Msa0467490

M. sativa cultivar zhongmu-4 / Msa0467490

KEGG: K10866
GO: GO:0000003 GO:0000228 GO:0000280 GO:0000722 GO:0000723 GO:0000724 GO:0000725 GO:0000781 GO:0000784 GO:0000785 GO:0000790 GO:0000793 GO:0000794 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003691 GO:0003697 GO:0003824 GO:0004017 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006259 GO:0006278 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007004 GO:0007049 GO:0007127 GO:0007131 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009117 GO:0009123 GO:0009165 GO:0009987 GO:0010833 GO:0016043 GO:0016233 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016776 GO:0018130 GO:0019205 GO:0019438 GO:0019637 GO:0022402 GO:0022414 GO:0030870 GO:0031974 GO:0031981 GO:0032200 GO:0032392 GO:0032508 GO:0032991 GO:0033554 GO:0034641 GO:0034645 GO:0034654 GO:0035825 GO:0035861 GO:0042162 GO:0042592 GO:0043047 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043565 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0046940 GO:0048285 GO:0050145 GO:0050896 GO:0051276 GO:0051321 GO:0051716 GO:0051880 GO:0055086 GO:0060249 GO:0061982 GO:0065007 GO:0065008 GO:0070013 GO:0070192 GO:0071103 GO:0071704 GO:0071840 GO:0071897 GO:0090304 GO:0090305 GO:0090407 GO:0090734 GO:0097159 GO:0098687 GO:0098847 GO:0140013 GO:1901293 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1903046
PFAM: PF02463.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467490	XP_024635093.2	96.053	684	5	1	1	662	633	1316	0.0	1332

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467490	sp\|Q9SL02\|RAD50_ARATH	68.275	684	195	1	1	662	633	1316	0.0	919

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467490	A0A396IUE8	96.053	684	5	1	1	662	633	1316	0.0	1332

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0467490	0.837392	5.340308e-57	-8.615850e-47
Msa0000190	Msa0467490	0.807172	5.754688e-50	-8.615850e-47
Msa0001780	Msa0467490	0.801623	8.249690e-49	-8.615850e-47
Msa0001940	Msa0467490	0.804072	2.574235e-49	-8.615850e-47
Msa0001960	Msa0467490	0.806737	7.114719e-50	-8.615850e-47
Msa0003700	Msa0467490	0.843394	1.439856e-58	-8.615850e-47
Msa0003890	Msa0467490	0.832129	1.127563e-55	-8.615850e-47
Msa0005890	Msa0467490	0.829979	3.801221e-55	-8.615850e-47
Msa0006110	Msa0467490	0.802572	5.263435e-49	-8.615850e-47
Msa0008110	Msa0467490	0.805821	1.109528e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467490	MtrunA17_Chr3g0121841	96.053	684	5	1	1	662	633	1316	0.0	1332

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467490	AT2G31970.1	68.275	684	195	1	1	662	633	1316	0.0	919

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Find 125 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGTCTTCTTCTTCTG+CGG	0.575571	3_3:-68803332	None:intergenic
AAACCTTATAACTGTAGGAT+CGG	0.524478	3_3:-68806913	None:intergenic
AAACTTCACATTGGCCACAA+AGG	0.571367	3_3:-68807931	None:intergenic
AAAGAAAGGAGACAGGTTGA+AGG	0.507362	3_3:+68805023	Msa0467490:CDS
AAAGGAACTCCAGCAAGTCA+AGG	0.621494	3_3:+68803598	Msa0467490:CDS
AAATAAGATTGATCTTAAGC+AGG	0.552984	3_3:+68805927	Msa0467490:CDS
AAATGCTGAAAGTCTGGCTG+CGG	0.641502	3_3:+68807325	Msa0467490:CDS
AACCTTATAACTGTAGGATC+GGG	0.541554	3_3:-68806912	None:intergenic
AACTGCAAAGTTGCGAAACC+AGG	0.521209	3_3:+68805079	Msa0467490:CDS
AACTTTGCAAAAGAAAGTTG+AGG	0.611565	3_3:+68803935	Msa0467490:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AGAAAAGAGATGTACAGAAA+AGG	+	chr3_3:68803096-68803115	Msa0467490:CDS	30.0%
AAAAAATGATTTCATCGGTG+TGG	-	chr3_3:68803137-68803156	None:intergenic	30.0%
AGCAAATATAACATTGCAGA+TGG	+	chr3_3:68803232-68803251	Msa0467490:intron	30.0%
ACATTTGAAAATTCTTGCTG+TGG	+	chr3_3:68803475-68803494	Msa0467490:CDS	30.0%
CAAAACTAATAATCACCATC+CGG	-	chr3_3:68803754-68803773	None:intergenic	30.0%
TTTGCAAAGTTTGAATTTCG+AGG	-	chr3_3:68803926-68803945	None:intergenic	30.0%
AACTTTGCAAAAGAAAGTTG+AGG	+	chr3_3:68803935-68803954	Msa0467490:CDS	30.0%
TCATACATATCTTGGTTACT+AGG	+	chr3_3:68804139-68804158	Msa0467490:intron	30.0%
CATACATATCTTGGTTACTA+GGG	+	chr3_3:68804140-68804159	Msa0467490:intron	30.0%
ATATATCAGGTATTCAATCG+CGG	+	chr3_3:68804220-68804239	Msa0467490:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	68803005	68808042	68803005	ID=Msa0467490;Name=Msa0467490
chr3_3	mRNA	68803005	68808042	68803005	ID=Msa0467490-mRNA-1;Parent=Msa0467490;Name=Msa0467490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0\|0.92\|0.86\|1\|0.92\|0.8\|15\|298\|662
chr3_3	exon	68803005	68803117	68803005	ID=Msa0467490-mRNA-1:exon:16087;Parent=Msa0467490-mRNA-1
chr3_3	exon	68803234	68803363	68803234	ID=Msa0467490-mRNA-1:exon:16088;Parent=Msa0467490-mRNA-1
chr3_3	exon	68803446	68803655	68803446	ID=Msa0467490-mRNA-1:exon:16089;Parent=Msa0467490-mRNA-1
chr3_3	exon	68803837	68804045	68803837	ID=Msa0467490-mRNA-1:exon:16090;Parent=Msa0467490-mRNA-1
chr3_3	exon	68804161	68804362	68804161	ID=Msa0467490-mRNA-1:exon:16091;Parent=Msa0467490-mRNA-1
chr3_3	exon	68804768	68804937	68804768	ID=Msa0467490-mRNA-1:exon:16092;Parent=Msa0467490-mRNA-1
chr3_3	exon	68805011	68805269	68805011	ID=Msa0467490-mRNA-1:exon:16093;Parent=Msa0467490-mRNA-1
chr3_3	exon	68805877	68806002	68805877	ID=Msa0467490-mRNA-1:exon:16094;Parent=Msa0467490-mRNA-1
chr3_3	exon	68806102	68806154	68806102	ID=Msa0467490-mRNA-1:exon:16095;Parent=Msa0467490-mRNA-1
chr3_3	exon	68806781	68806931	68806781	ID=Msa0467490-mRNA-1:exon:16096;Parent=Msa0467490-mRNA-1
chr3_3	exon	68807026	68807088	68807026	ID=Msa0467490-mRNA-1:exon:16097;Parent=Msa0467490-mRNA-1
chr3_3	exon	68807224	68807357	68807224	ID=Msa0467490-mRNA-1:exon:16098;Parent=Msa0467490-mRNA-1
chr3_3	exon	68807444	68807572	68807444	ID=Msa0467490-mRNA-1:exon:16099;Parent=Msa0467490-mRNA-1
chr3_3	exon	68807682	68807968	68807682	ID=Msa0467490-mRNA-1:exon:16100;Parent=Msa0467490-mRNA-1
chr3_3	exon	68807992	68808042	68807992	ID=Msa0467490-mRNA-1:exon:16101;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68803005	68803117	68803005	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68803234	68803363	68803234	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68803446	68803655	68803446	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68803837	68804045	68803837	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68804161	68804362	68804161	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68804768	68804937	68804768	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68805011	68805269	68805011	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68805877	68806002	68805877	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68806102	68806154	68806102	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68806781	68806931	68806781	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68807026	68807088	68807026	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68807224	68807357	68807224	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68807444	68807572	68807444	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	CDS	68807682	68807721	68807682	ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3	three_prime_UTR	68807722	68807968	68807722	ID=Msa0467490-mRNA-1:three_prime_utr;Parent=Msa0467490-mRNA-1
chr3_3	three_prime_UTR	68807992	68808042	68807992	ID=Msa0467490-mRNA-1:three_prime_utr;Parent=Msa0467490-mRNA-1

Gene Sequence

>Msa0467490

AGAAAGAAATTTATCGAATCCAAGCTTCAATCTTTGGACCAGCAAGGCTCTGGAATCGATTCTTATCTAAAACTTTTAGAGTCTGCCAAGGAGAAAAGAGATGTACAGAAAAGCAAATATAACATTGCAGATGGTATGCGACAAATGTTTGATCCTTTTGAAAGGGTTGCAAGAGCTCATCATTTTTGCCCTTGCTGTGAGCGTTCTTTCTCCGCAGAAGAAGAAGACAGTTTTGTCAAGAAGCAAAGAGGGAAGGCTGCTAGTTCAGCTGAACATTTGAAAATTCTTGCTGTGGAGTCCTCAAGTGCAGACTCTGATTATCAGCAGTTGGAGAAGCTTCGTATATGGTATGAAGAATATGTTAAACTTAGCAAGGAGACAATCCCCAATGCTGAAAAGGAACTCCAGCAAGTCAAGGAAGAGCTGGATCACAAATCCCAGGCACTTGATGATGTTTTAGGTATTTTAGCTCAAGTGAAGACTGACAAGGAGTTGGTTGAGCCGGTGGTGAAATATGTTGAACATGCTGATCGAATTTTCCTCGAAATTCAAACTTTGCAAAAGAAAGTTGAGGATTTAGAAAGTGAGCTTGGTTGTGGAGGACCAGAAGTGAGGACTCTAGAAGAAATTCAATTGGAGCTCGTTGCATTGCAGGGAACAAAGGACAATTTGCATACTGAGTTGACGAATTTGATGGATGAGCAGAGGAATATGGATACTGATATATCAGGTATTCAATCGCGGTTGCAGAATGCAAGGGCTGATAAAATGAATGCAGCTATGAAATTGCAAGATGTAAAAAGATTAGAAGAAGAATTAGAACGACTGACAGAAGAAATGACCCAAGTTGATCTTGATGAGAAGAGTCTGACTGAAGCCTTTGGACCTTTATCCAAGCGCAAAGATAAAATACGTGCTGACTATAATGAATTGAAACTTAGACTTGACCACGAGTTTGAGAATCTGGTTGAAAAAAAGAGAATTTATCAGCAAGAAGCTGAAGCAGTTTTTGGAATGACTTCTAAGATCAAAGAGTACTCTAACTCAAAGAAAGGAGACAGGTTGAAGGAGCTGCAGGAAAAGAAATCTCTATTAGAATCTCAACTGCAAAGTTGCGAAACCAGGATGCAGGAAATTATAGATGAACTAGACAAAAGGAAAGATTTGTTGCGAAATACTGATTCGCTTAGAAGAAAAATTGAGGACAACTTAAATTACAGAAAAACAAAGGCTGAAGTAGATGAGCTTGAACGTGAAATTGAAATACTTGAAGAAAATATGTTGAAGATTGGTTTAAACAGGTGCAAAGGAACAATAGATGTTTACCAAAGCAATATTTCCAAAAATAAGATTGATCTTAAGCAGGCCCAATACAAGGACATAGATAAGCGATATTTTGACCAGCTTATCCAGCTTAAGACAACTGAAATGGCAAACAAAGACCTGGACAGATACTACAATGCACTTGACAAAGCACTGATGCGATTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGAGAATTGTGGCAACAGACTTATAGAGGACAGGATATTGACTGCATTAGTATTCATTCTGATTCCGAAGGTGGTGGTACCCGATCCTACAGTTATAAGGTTCTCATGCAGACTGGTGATGCTGAGTTAGAAATGAGAGGAAGATGTAGTGCAGGACAGAAGGTACTGGCATCTCTCATCATACGGTTGGCTTTAGCGGAAACGTTTTGCCTCAATTGTGGAATTCTTGCATTGGATGAGCCAACCACAAATTTGGACGGTCCAAATGCTGAAAGTCTGGCTGCGGCTATCCTGAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATTACTCATGACGAGCGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCGGAGAGATATTATCGAGTCGCAAAAGATGACCATCAGCACAGTATAATCGAATCTCAGGAGATATTCGACTGA

Protein sequence

>Msa0467490

RKKFIESKLQSLDQQGSGIDSYLKLLESAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHFCPCCERSFSAEEEDSFVKKQRGKAASSAEHLKILAVESSSADSDYQQLEKLRIWYEEYVKLSKETIPNAEKELQQVKEELDHKSQALDDVLGILAQVKTDKELVEPVVKYVEHADRIFLEIQTLQKKVEDLESELGCGGPEVRTLEEIQLELVALQGTKDNLHTELTNLMDEQRNMDTDISGIQSRLQNARADKMNAAMKLQDVKRLEEELERLTEEMTQVDLDEKSLTEAFGPLSKRKDKIRADYNELKLRLDHEFENLVEKKRIYQQEAEAVFGMTSKIKEYSNSKKGDRLKELQEKKSLLESQLQSCETRMQEIIDELDKRKDLLRNTDSLRRKIEDNLNYRKTKAEVDELEREIEILEENMLKIGLNRCKGTIDVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDCISIHSDSEGGGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAAILRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD*