AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467490


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467490 MtrunA17_Chr3g0121841 96.053 684 5 1 1 662 633 1316 0.0 1332
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467490 AT2G31970.1 68.275 684 195 1 1 662 633 1316 0.0 919

Find 125 sgRNAs with CRISPR-Local

Find 330 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAATCCAAGCTTCAATCTT+TGG 0.195557 3_3:+68803019 Msa0467490:CDS
GGATGAGCCAACCACAAATT+TGG 0.220272 3_3:+68807295 Msa0467490:CDS
CCAGCTCTTCCTTGACTTGC+TGG 0.240650 3_3:-68803607 None:intergenic
CTTATCTATGTCCTTGTATT+GGG 0.266744 3_3:-68805950 None:intergenic
GCGATTCCACACAATGAAAA+TGG 0.287037 3_3:+68806790 Msa0467490:CDS
TCTTCTAGAGTCCTCACTTC+TGG 0.295451 3_3:-68803987 None:intergenic
GCTTATCTATGTCCTTGTAT+TGG 0.303062 3_3:-68805951 None:intergenic
GCAGCCAGACTTTCAGCATT+TGG 0.345546 3_3:-68807323 None:intergenic
TGACCACGAGTTTGAGAATC+TGG 0.349229 3_3:+68804848 Msa0467490:CDS
TGACCAGCTTATCCAGCTTA+AGG 0.354575 3_3:+68805981 Msa0467490:CDS
AATCGATTCCAGAGCCTTGC+TGG 0.358585 3_3:-68803043 None:intergenic
GATGGATGAGCAGAGGAATA+TGG 0.361544 3_3:+68804191 Msa0467490:CDS
AGTTGGCTTGTTTGAGGAAT+TGG 0.361691 3_3:+68807750 Msa0467490:three_prime_UTR
CAGAGTCTGACTGAAGCCTT+TGG 0.365798 3_3:+68804765 Msa0467490:intron
TTATCTTTGCGCTTGGATAA+AGG 0.366541 3_3:-68804789 None:intergenic
CCTTTGAGTTGGCTTGTTTG+AGG 0.369736 3_3:+68807744 Msa0467490:three_prime_UTR
ATTGGAGCTCGTTGCATTGC+AGG 0.370530 3_3:+68804016 Msa0467490:CDS
TACCCGATCCTACAGTTATA+AGG 0.377263 3_3:+68806910 Msa0467490:CDS
CATCATACGGTTGGCTTTAG+CGG 0.398104 3_3:+68807238 Msa0467490:CDS
TTCTTTACAGACAACTGAAA+TGG 0.401699 3_3:+68806092 Msa0467490:intron
GATAATATCTCTCCGCATGC+TGG 0.418577 3_3:-68807531 None:intergenic
TTTGCAAAGTTTGAATTTCG+AGG 0.419600 3_3:-68803923 None:intergenic
AATATGGATACTGATATATC+AGG 0.422969 3_3:+68804207 Msa0467490:CDS
CCTTCTCATCAAGATCAACT+TGG 0.427850 3_3:-68804341 None:intergenic
AGTTGGAGAAGCTTCGTATA+TGG 0.428659 3_3:+68803528 Msa0467490:CDS
TACAGAAATTAGCGTTCAAA+TGG 0.430797 3_3:-68807882 None:intergenic
CGGTCCAAATGCTGAAAGTC+TGG 0.431082 3_3:+68807319 Msa0467490:CDS
ATCTATAATTTCCTGCATCC+TGG 0.432798 3_3:-68805097 None:intergenic
TACTGAGTTGACGAATTTGA+TGG 0.440214 3_3:+68804173 Msa0467490:CDS
GACTCTAGAAGAAATTCAAT+TGG 0.441635 3_3:+68803998 Msa0467490:CDS
TACCTTCGTGACAGTTAAAC+AGG 0.442230 3_3:+68805863 Msa0467490:intron
TCTTTGGACCAGCAAGGCTC+TGG 0.443969 3_3:+68803035 Msa0467490:CDS
GACAATCCCCAATGCTGAAA+AGG 0.445333 3_3:+68803580 Msa0467490:CDS
TTAGAAAGTGAGCTTGGTTG+TGG 0.445491 3_3:+68803960 Msa0467490:CDS
GAGGATTTAGAAAGTGAGCT+TGG 0.448238 3_3:+68803954 Msa0467490:CDS
TGATTACATCATCAAGTGCC+TGG 0.450118 3_3:-68803640 None:intergenic
ATTTGGACCGTCCAAATTTG+TGG 0.456117 3_3:-68807306 None:intergenic
CTGGTCCAAAGATTGAAGCT+TGG 0.467024 3_3:-68803024 None:intergenic
GCACAGTATAATCGAATCTC+AGG 0.468434 3_3:+68807685 Msa0467490:CDS
GAATGAAAGGGTTTGTGGCC+TGG 0.471774 3_3:+68808015 Msa0467490:three_prime_UTR
GAAGAAAATATGTTGAAGAT+TGG 0.472939 3_3:+68805246 Msa0467490:CDS
ATGAGAGGAAGATGTAGTGC+AGG 0.481825 3_3:+68807059 Msa0467490:CDS
ATACCTTAAGCTGGATAAGC+TGG 0.485539 3_3:-68805984 None:intergenic
GGATCGGGTACCACCACCTT+CGG 0.488070 3_3:-68806897 None:intergenic
GCTCTTGCAACCCTTTCAAA+AGG 0.489126 3_3:-68803274 None:intergenic
ATTCACAATCATTGCGATCC+AGG 0.490238 3_3:-68808033 None:intergenic
TATTAGCTACTCCTTTGAGT+TGG 0.492125 3_3:+68807733 Msa0467490:three_prime_UTR
AGAAAAGAGATGTACAGAAA+AGG 0.495584 3_3:+68803096 Msa0467490:CDS
CAATTGTGGAATTCTTGCAT+TGG 0.496655 3_3:+68807274 Msa0467490:CDS
ATCCTTGTTATGCAGGATCA+TGG 0.498228 3_3:+68807429 Msa0467490:intron
AGACAGGTTGAAGGAGCTGC+AGG 0.503868 3_3:+68805032 Msa0467490:CDS
AAAGAAAGGAGACAGGTTGA+AGG 0.507362 3_3:+68805023 Msa0467490:CDS
CCAGCAAGTCAAGGAAGAGC+TGG 0.515756 3_3:+68803607 Msa0467490:CDS
CAGTCTGTATAATGAATGAA+AGG 0.515997 3_3:+68808002 Msa0467490:three_prime_UTR
GGACCGTCCAAATTTGTGGT+TGG 0.519912 3_3:-68807302 None:intergenic
AACTGCAAAGTTGCGAAACC+AGG 0.521209 3_3:+68805079 Msa0467490:CDS
CACCACATTATACCTTAAGC+TGG 0.521804 3_3:-68805993 None:intergenic
ATAATGAATGAAAGGGTTTG+TGG 0.521883 3_3:+68808010 Msa0467490:three_prime_UTR
TTGTGGCAACAGACTTATAG+AGG 0.523323 3_3:+68806839 Msa0467490:CDS
AAACCTTATAACTGTAGGAT+CGG 0.524478 3_3:-68806913 None:intergenic
GGAGATATTCGACTGAAAGA+TGG 0.524986 3_3:+68807706 Msa0467490:exon
CATTCTGATTCCGAAGGTGG+TGG 0.531974 3_3:+68806887 Msa0467490:CDS
AAGTTGCGAAACCAGGATGC+AGG 0.533607 3_3:+68805086 Msa0467490:CDS
ATAATCAGAGTCTGCACTTG+AGG 0.534890 3_3:-68803501 None:intergenic
GTGCATTGTAGTATCTGTCC+AGG 0.535052 3_3:-68806125 None:intergenic
TTATAGATGAACTAGACAAA+AGG 0.537241 3_3:+68805112 Msa0467490:CDS
AAGATGTAGTGCAGGACAGA+AGG 0.540905 3_3:+68807067 Msa0467490:CDS
AACCTTATAACTGTAGGATC+GGG 0.541554 3_3:-68806912 None:intergenic
TCTTAAGCAGGCCCAATACA+AGG 0.544643 3_3:+68805939 Msa0467490:CDS
TGACAAGGAGTTGGTTGAGC+CGG 0.545549 3_3:+68803866 Msa0467490:CDS
GAAAGTGAGCTTGGTTGTGG+AGG 0.546111 3_3:+68803963 Msa0467490:CDS
AGAAAGAACGCTCACAGCAA+GGG 0.547047 3_3:-68803309 None:intergenic
GGCATCTCTCATCATACGGT+TGG 0.549446 3_3:+68807229 Msa0467490:CDS
ACATTTGAAAATTCTTGCTG+TGG 0.549787 3_3:+68803475 Msa0467490:CDS
AGGTACTCTAACTCAAAGAA+AGG 0.549818 3_3:+68805009 Msa0467490:intron
ATTCATTCTGATTCCGAAGG+TGG 0.550830 3_3:+68806884 Msa0467490:CDS
ATGCAAGAATTCCACAATTG+AGG 0.551543 3_3:-68807271 None:intergenic
AAATAAGATTGATCTTAAGC+AGG 0.552984 3_3:+68805927 Msa0467490:CDS
TACTGGCATCTCTCATCATA+CGG 0.554024 3_3:+68807225 Msa0467490:CDS
TTGGAGCTCGTTGCATTGCA+GGG 0.555173 3_3:+68804017 Msa0467490:CDS
GCGCTTGGATAAAGGTCCAA+AGG 0.563340 3_3:-68804781 None:intergenic
CATGGAGGACAGGAAAGGCC+AGG 0.565053 3_3:+68807447 Msa0467490:CDS
AGCAAATATAACATTGCAGA+TGG 0.567660 3_3:+68803232 Msa0467490:intron
AGTATTCATTCTGATTCCGA+AGG 0.570105 3_3:+68806881 Msa0467490:CDS
TATGCAGGATCATGGAGGAC+AGG 0.570216 3_3:+68807437 Msa0467490:intron
AAACTTCACATTGGCCACAA+AGG 0.571367 3_3:-68807931 None:intergenic
GCAACAGACTTATAGAGGAC+AGG 0.572063 3_3:+68806844 Msa0467490:CDS
GATTACATCATCAAGTGCCT+GGG 0.574783 3_3:-68803639 None:intergenic
AAAACTGTCTTCTTCTTCTG+CGG 0.575571 3_3:-68803332 None:intergenic
GAGAAAGAACGCTCACAGCA+AGG 0.576134 3_3:-68803310 None:intergenic
TGTTCAACATATTTCACCAC+CGG 0.577672 3_3:-68803885 None:intergenic
AATCGCGGTTGCAGAATGCA+AGG 0.579439 3_3:+68804235 Msa0467490:CDS
GTCTGGCTGCGGCTATCCTG+AGG 0.580685 3_3:+68807336 Msa0467490:CDS
CAACCAGATTCTCAAACTCG+TGG 0.581086 3_3:-68804851 None:intergenic
AGAATATGTTAAACTTAGCA+AGG 0.582751 3_3:+68803556 Msa0467490:CDS
CTTCAATCTTTGGACCAGCA+AGG 0.583682 3_3:+68803029 Msa0467490:CDS
CTAACTCAAAGAAAGGAGAC+AGG 0.593565 3_3:+68805016 Msa0467490:CDS
ATGGCAAACCTTATAACTGT+AGG 0.597534 3_3:-68806918 None:intergenic
CGAATTTGATGGATGAGCAG+AGG 0.597782 3_3:+68804184 Msa0467490:CDS
AGTGAAGACTGACAAGGAGT+TGG 0.598043 3_3:+68803857 Msa0467490:CDS
GGTAAATCTACAACAAGTGT+CGG 0.599902 3_3:-68807861 None:intergenic
CTTCTCATCAAGATCAACTT+GGG 0.600285 3_3:-68804340 None:intergenic
CCAAGTTGATCTTGATGAGA+AGG 0.601866 3_3:+68804341 Msa0467490:CDS
CAAGGAGTTGGTTGAGCCGG+TGG 0.602126 3_3:+68803869 Msa0467490:CDS
GATTGGTCAGCGCCAGCATG+CGG 0.603404 3_3:+68807519 Msa0467490:CDS
AGTCTGTATAATGAATGAAA+GGG 0.605122 3_3:+68808003 Msa0467490:three_prime_UTR
AGACTCTGATTATCAGCAGT+TGG 0.605534 3_3:+68803511 Msa0467490:CDS
AGAGCTGGATCACAAATCCC+AGG 0.606303 3_3:+68803622 Msa0467490:CDS
TTAATCACAGCAAAGAGGGA+AGG 0.609678 3_3:+68803436 Msa0467490:intron
ACAAAATTATAAGAGAATTG+TGG 0.610414 3_3:+68806822 Msa0467490:CDS
AACTTTGCAAAAGAAAGTTG+AGG 0.611565 3_3:+68803935 Msa0467490:CDS
ATACAGGTTCTCATGCAGAC+TGG 0.612239 3_3:+68807020 Msa0467490:intron
AAAGGAACTCCAGCAAGTCA+AGG 0.621494 3_3:+68803598 Msa0467490:CDS
GATGCTGAGTTAGAAATGAG+AGG 0.622381 3_3:+68807044 Msa0467490:CDS
TGAAATGGCAAACAAAGACC+TGG 0.623587 3_3:+68806107 Msa0467490:CDS
CCTCAAACAAGCCAACTCAA+AGG 0.628366 3_3:-68807744 None:intergenic
GAGCCAACCACAAATTTGGA+CGG 0.640463 3_3:+68807299 Msa0467490:CDS
AGGATCATGGAGGACAGGAA+AGG 0.641225 3_3:+68807442 Msa0467490:intron
AAATGCTGAAAGTCTGGCTG+CGG 0.641502 3_3:+68807325 Msa0467490:CDS
ATCGCGGTTGCAGAATGCAA+GGG 0.644383 3_3:+68804236 Msa0467490:CDS
TGACAGTTAAACAGGTGCAA+AGG 0.647336 3_3:+68805871 Msa0467490:intron
GTTGTGGAGGACCAGAAGTG+AGG 0.655223 3_3:+68803976 Msa0467490:CDS
AGCTCAAGTGAAGACTGACA+AGG 0.685303 3_3:+68803851 Msa0467490:CDS
ATATATCAGGTATTCAATCG+CGG 0.698261 3_3:+68804220 Msa0467490:CDS
CTTGTTATGCAGGATCATGG+AGG 0.720846 3_3:+68807432 Msa0467490:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAGTATTATTCTTTTTT+TGG + chr3_3:68805538-68805557 Msa0467490:intron 10.0%
!! AATGTATAATCAATTTATTA+AGG + chr3_3:68806235-68806254 Msa0467490:intron 10.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:68804405-68804424 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:68804405-68804424 None:intergenic 100.0%
! GGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:68804405-68804424 None:intergenic 100.0%
!!! AATTTTTCTTTTGAATAAGT+GGG - chr3_3:68804435-68804454 None:intergenic 15.0%
!! TACTAAATATATGTTATAAC+TGG - chr3_3:68805526-68805545 None:intergenic 15.0%
!! TTGAAAATATTATAAAAGGA+TGG - chr3_3:68806488-68806507 None:intergenic 15.0%
!! TCAAAACCATATAAAGTTAT+TGG - chr3_3:68803401-68803420 None:intergenic 20.0%
!! ATCTACTTAAAAAAAGTTCA+AGG - chr3_3:68803688-68803707 None:intergenic 20.0%
!! CATACATTAAAAAAAGAAAG+TGG - chr3_3:68803727-68803746 None:intergenic 20.0%
!!! CACTTTCTTTTTTTAATGTA+TGG + chr3_3:68803725-68803744 Msa0467490:intron 20.0%
!!! TTTTTTTAATGTATGGTTTC+CGG + chr3_3:68803732-68803751 Msa0467490:intron 20.0%
!! TTTATAATCTATGTCTTACT+TGG + chr3_3:68804087-68804106 Msa0467490:intron 20.0%
!! TATTATTCTCATACATATCT+TGG + chr3_3:68804131-68804150 Msa0467490:intron 20.0%
!!! ATTTTTCTTTTGAATAAGTG+GGG - chr3_3:68804434-68804453 None:intergenic 20.0%
!!! GAATTTTTCTTTTGAATAAG+TGG - chr3_3:68804436-68804455 None:intergenic 20.0%
!! ATTTGTGTTTATTTCCAATA+AGG + chr3_3:68804526-68804545 Msa0467490:intron 20.0%
!!! GAATTTTAGAATTTTGATTG+AGG - chr3_3:68804655-68804674 None:intergenic 20.0%
!! ATGCATTATGATTTGATATA+CGG - chr3_3:68804719-68804738 None:intergenic 20.0%
!!! CTCTTGAAAATTTACAATTT+TGG - chr3_3:68804956-68804975 None:intergenic 20.0%
!! CTTAAATTACAGAAAAACAA+AGG + chr3_3:68805185-68805204 Msa0467490:CDS 20.0%
!! TACACAAAAGAAAGAAAAAA+TGG - chr3_3:68805839-68805858 None:intergenic 20.0%
!!! TATTTTTGGAAATATTGCTT+TGG - chr3_3:68805912-68805931 None:intergenic 20.0%
!!! CTTAAGATCAATCTTATTTT+TGG - chr3_3:68805926-68805945 None:intergenic 20.0%
!! ACAAAATTATAAGAGAATTG+TGG + chr3_3:68806822-68806841 Msa0467490:CDS 20.0%
!! CAATATTTCAAAATCTGTAT+TGG - chr3_3:68806986-68807005 None:intergenic 20.0%
!! AAATATGAGACATAAGTTAA+AGG - chr3_3:68807658-68807677 None:intergenic 20.0%
!!! CTAATTTTAAAACTTCACAT+TGG - chr3_3:68807943-68807962 None:intergenic 20.0%
! GGTCAAAAAAATGATTTCAT+CGG - chr3_3:68803142-68803161 None:intergenic 25.0%
!! AAATGTTTGATCCTTTTGAA+AGG + chr3_3:68803263-68803282 Msa0467490:CDS 25.0%
!!! AATGTTTGATCCTTTTGAAA+GGG + chr3_3:68803264-68803283 Msa0467490:CDS 25.0%
! ATTGGTCAGTATATTATGAT+AGG - chr3_3:68803383-68803402 None:intergenic 25.0%
! TACTGACCAATAACTTTATA+TGG + chr3_3:68803392-68803411 Msa0467490:intron 25.0%
! AGAATATGTTAAACTTAGCA+AGG + chr3_3:68803556-68803575 Msa0467490:CDS 25.0%
! AAGTTCAAGGAAGAATTTAA+AGG - chr3_3:68803675-68803694 None:intergenic 25.0%
!!! GTAATTTTGTTTCAGGTTTT+AGG + chr3_3:68803822-68803841 Msa0467490:intron 25.0%
! AATATGGATACTGATATATC+AGG + chr3_3:68804207-68804226 Msa0467490:CDS 25.0%
! TTATAGATGAACTAGACAAA+AGG + chr3_3:68805112-68805131 Msa0467490:CDS 25.0%
! GAAGAAAATATGTTGAAGAT+TGG + chr3_3:68805246-68805265 Msa0467490:CDS 25.0%
! AAATAAGATTGATCTTAAGC+AGG + chr3_3:68805927-68805946 Msa0467490:CDS 25.0%
! AATAAAAAATCCCCTTGATA+TGG + chr3_3:68806399-68806418 Msa0467490:intron 25.0%
! ATAAAAAATCCCCTTGATAT+GGG + chr3_3:68806400-68806419 Msa0467490:intron 25.0%
! GAACTTAATAAATGTATTGG+AGG + chr3_3:68806423-68806442 Msa0467490:intron 25.0%
! ATAATTCTTAATGCTCCATT+AGG - chr3_3:68806638-68806657 None:intergenic 25.0%
! TAATACTTGAACACAACAAA+TGG - chr3_3:68806679-68806698 None:intergenic 25.0%
! AAATAAAATAGTAGCATTGC+TGG - chr3_3:68807582-68807601 None:intergenic 25.0%
! AGTCTGTATAATGAATGAAA+GGG + chr3_3:68808003-68808022 Msa0467490:three_prime_UTR 25.0%
AGAAAAGAGATGTACAGAAA+AGG + chr3_3:68803096-68803115 Msa0467490:CDS 30.0%
AAAAAATGATTTCATCGGTG+TGG - chr3_3:68803137-68803156 None:intergenic 30.0%
! AGTACATTTGAGACAACAAT+GGG - chr3_3:68803190-68803209 None:intergenic 30.0%
! TAGTACATTTGAGACAACAA+TGG - chr3_3:68803191-68803210 None:intergenic 30.0%
AGCAAATATAACATTGCAGA+TGG + chr3_3:68803232-68803251 Msa0467490:intron 30.0%
ACATTTGAAAATTCTTGCTG+TGG + chr3_3:68803475-68803494 Msa0467490:CDS 30.0%
CAAAACTAATAATCACCATC+CGG - chr3_3:68803754-68803773 None:intergenic 30.0%
!! AACTGCTGTAATTTTGTTTC+AGG + chr3_3:68803815-68803834 Msa0467490:intron 30.0%
TTTGCAAAGTTTGAATTTCG+AGG - chr3_3:68803926-68803945 None:intergenic 30.0%
AACTTTGCAAAAGAAAGTTG+AGG + chr3_3:68803935-68803954 Msa0467490:CDS 30.0%
! GACTCTAGAAGAAATTCAAT+TGG + chr3_3:68803998-68804017 Msa0467490:CDS 30.0%
TCATACATATCTTGGTTACT+AGG + chr3_3:68804139-68804158 Msa0467490:intron 30.0%
CATACATATCTTGGTTACTA+GGG + chr3_3:68804140-68804159 Msa0467490:intron 30.0%
ATATATCAGGTATTCAATCG+CGG + chr3_3:68804220-68804239 Msa0467490:CDS 30.0%
TGAAATCAAAGATGAACAAC+AGG - chr3_3:68804497-68804516 None:intergenic 30.0%
! GAAGAAAGCTATTTCCTTAT+TGG - chr3_3:68804543-68804562 None:intergenic 30.0%
!!! CGTTTCATTTTTTATAACGC+TGG + chr3_3:68804681-68804700 Msa0467490:intron 30.0%
CATAATTCCATCTAACATCT+TGG + chr3_3:68804736-68804755 Msa0467490:intron 30.0%
TTCGCTTAGAAGAAAAATTG+AGG + chr3_3:68805158-68805177 Msa0467490:CDS 30.0%
! TTTTGACAACAATGGTATGA+CGG - chr3_3:68805353-68805372 None:intergenic 30.0%
!!! TGGATTTTAGGATTTAAGTC+GGG - chr3_3:68805377-68805396 None:intergenic 30.0%
!!! CTGGATTTTAGGATTTAAGT+CGG - chr3_3:68805378-68805397 None:intergenic 30.0%
!!! CTTATTTTGGGATTCTACTA+TGG - chr3_3:68805437-68805456 None:intergenic 30.0%
!! CGATGGATTTTGCTTATTTT+GGG - chr3_3:68805449-68805468 None:intergenic 30.0%
AAAATCGCAATCAAAATCGA+TGG - chr3_3:68805570-68805589 None:intergenic 30.0%
! AAATCGAAGGATTTTACTCA+AGG - chr3_3:68805622-68805641 None:intergenic 30.0%
AAAATCGCAATCAAAATCGA+AGG - chr3_3:68805570-68805589 None:intergenic 30.0%
TCGAAAGGGAATAACAAAAT+CGG - chr3_3:68805665-68805684 None:intergenic 30.0%
TGTACATCAATCATGGTTAT+TGG - chr3_3:68805735-68805754 None:intergenic 30.0%
GGTAAAATGTACATCAATCA+TGG - chr3_3:68805742-68805761 None:intergenic 30.0%
AAGTCTATTATTGTGCTAGA+AGG - chr3_3:68805809-68805828 None:intergenic 30.0%
CTTATCTATGTCCTTGTATT+GGG - chr3_3:68805953-68805972 None:intergenic 30.0%
TTCTTTACAGACAACTGAAA+TGG + chr3_3:68806092-68806111 Msa0467490:intron 30.0%
ATAATCCCCAAACTTGAATA+GGG + chr3_3:68806363-68806382 Msa0467490:intron 30.0%
TAAAAAATCCCCTTGATATG+GGG + chr3_3:68806401-68806420 Msa0467490:intron 30.0%
TATTAAGTTCCCCATATCAA+GGG - chr3_3:68806413-68806432 None:intergenic 30.0%
TTATTAAGTTCCCCATATCA+AGG - chr3_3:68806414-68806433 None:intergenic 30.0%
GGGGAACTTAATAAATGTAT+TGG + chr3_3:68806420-68806439 Msa0467490:intron 30.0%
CTTAATAAATGTATTGGAGG+AGG + chr3_3:68806426-68806445 Msa0467490:intron 30.0%
! TTTCTTCCATTTTCATTGTG+TGG - chr3_3:68806799-68806818 None:intergenic 30.0%
AAACCTTATAACTGTAGGAT+CGG - chr3_3:68806916-68806935 None:intergenic 30.0%
! ACCAGTTTTCAATATAGAGA+TGG - chr3_3:68806940-68806959 None:intergenic 30.0%
! CAATTAGCTGAAAATTTTCC+TGG - chr3_3:68807468-68807487 None:intergenic 30.0%
TACAGAAATTAGCGTTCAAA+TGG - chr3_3:68807885-68807904 None:intergenic 30.0%
!!! CTGTAAGCTTGTTTTTGTTT+TGG + chr3_3:68807900-68807919 Msa0467490:three_prime_UTR 30.0%
CAGTCTGTATAATGAATGAA+AGG + chr3_3:68808002-68808021 Msa0467490:three_prime_UTR 30.0%
ATAATGAATGAAAGGGTTTG+TGG + chr3_3:68808010-68808029 Msa0467490:three_prime_UTR 30.0%
!!! AAAACTTTTAGAGTCTGCCA+AGG + chr3_3:68803073-68803092 Msa0467490:CDS 35.0%
! GTACATTTGAGACAACAATG+GGG - chr3_3:68803189-68803208 None:intergenic 35.0%
! TGCAATGTTATATTTGCTGC+AGG - chr3_3:68803230-68803249 None:intergenic 35.0%
AAAACTGTCTTCTTCTTCTG+CGG - chr3_3:68803335-68803354 None:intergenic 35.0%
!! AGAAGACAGTTTTGTCAAGA+AGG + chr3_3:68803342-68803361 Msa0467490:CDS 35.0%
! TCCTTTTAATCACAGCAAAG+AGG + chr3_3:68803431-68803450 Msa0467490:intron 35.0%
! CCTTTTAATCACAGCAAAGA+GGG + chr3_3:68803432-68803451 Msa0467490:intron 35.0%
TTTAATGTATGGTTTCCGGA+TGG + chr3_3:68803736-68803755 Msa0467490:intron 35.0%
TATACGTTAACAACGGGAAA+AGG - chr3_3:68803794-68803813 None:intergenic 35.0%
CAGTTGTATACGTTAACAAC+GGG - chr3_3:68803800-68803819 None:intergenic 35.0%
GCAGTTGTATACGTTAACAA+CGG - chr3_3:68803801-68803820 None:intergenic 35.0%
TGTTCAACATATTTCACCAC+CGG - chr3_3:68803888-68803907 None:intergenic 35.0%
! TACTGAGTTGACGAATTTGA+TGG + chr3_3:68804173-68804192 Msa0467490:CDS 35.0%
CTTCTCATCAAGATCAACTT+GGG - chr3_3:68804343-68804362 None:intergenic 35.0%
! TTCTTTTGAATAAGTGGGGA+GGG - chr3_3:68804430-68804449 None:intergenic 35.0%
! TTTCTTTTGAATAAGTGGGG+AGG - chr3_3:68804431-68804450 None:intergenic 35.0%
ACCACAATAACATTCACTAG+AGG + chr3_3:68804594-68804613 Msa0467490:intron 35.0%
TCCTCTAGTGAATGTTATTG+TGG - chr3_3:68804598-68804617 None:intergenic 35.0%
!! AGGCAAAGTTTTTGAAAAGC+AGG - chr3_3:68804635-68804654 None:intergenic 35.0%
TTATCTTTGCGCTTGGATAA+AGG - chr3_3:68804792-68804811 None:intergenic 35.0%
! ACGTATTTTATCTTTGCGCT+TGG - chr3_3:68804799-68804818 None:intergenic 35.0%
!!! AACACAAGTTTTGTTTGTCC+AGG + chr3_3:68804989-68805008 Msa0467490:intron 35.0%
! TTTCTTTGAGTTAGAGTACC+TGG - chr3_3:68805010-68805029 None:intergenic 35.0%
AGGTACTCTAACTCAAAGAA+AGG + chr3_3:68805009-68805028 Msa0467490:intron 35.0%
ATCTATAATTTCCTGCATCC+TGG - chr3_3:68805100-68805119 None:intergenic 35.0%
CGACTTAAATCCTAAAATCC+AGG + chr3_3:68805376-68805395 Msa0467490:intron 35.0%
! GTCACAAAATCCTGGATTTT+AGG - chr3_3:68805389-68805408 None:intergenic 35.0%
TGAAGAAAGTCACAAAATCC+TGG - chr3_3:68805397-68805416 None:intergenic 35.0%
CTATGGATTTAAGTCGTTGA+AGG - chr3_3:68805420-68805439 None:intergenic 35.0%
!! GCGATGGATTTTGCTTATTT+TGG - chr3_3:68805450-68805469 None:intergenic 35.0%
AAAATCGCAATCAAAAGCGA+TGG - chr3_3:68805466-68805485 None:intergenic 35.0%
CGAAAGGGAATAACAAAATC+GGG - chr3_3:68805664-68805683 None:intergenic 35.0%
GCTTATCTATGTCCTTGTAT+TGG - chr3_3:68805954-68805973 None:intergenic 35.0%
ATCCAGCTTAAGGTATAATG+TGG + chr3_3:68805991-68806010 Msa0467490:intron 35.0%
GATAATCCCCAAACTTGAAT+AGG + chr3_3:68806362-68806381 Msa0467490:intron 35.0%
TAATCCCCAAACTTGAATAG+GGG + chr3_3:68806364-68806383 Msa0467490:intron 35.0%
! AGAAACCCCTATTCAAGTTT+GGG - chr3_3:68806372-68806391 None:intergenic 35.0%
! AAGAAACCCCTATTCAAGTT+TGG - chr3_3:68806373-68806392 None:intergenic 35.0%
ATTAAGTTCCCCATATCAAG+GGG - chr3_3:68806412-68806431 None:intergenic 35.0%
TAATGCTCCATTAGGAAGTT+TGG - chr3_3:68806630-68806649 None:intergenic 35.0%
AGTATTCATTCTGATTCCGA+AGG + chr3_3:68806881-68806900 Msa0467490:CDS 35.0%
AACCTTATAACTGTAGGATC+GGG - chr3_3:68806915-68806934 None:intergenic 35.0%
ATGGCAAACCTTATAACTGT+AGG - chr3_3:68806921-68806940 None:intergenic 35.0%
GCCATCTCTATATTGAAAAC+TGG + chr3_3:68806936-68806955 Msa0467490:intron 35.0%
AAGGTATGTTCTGTTATCAC+TGG + chr3_3:68807086-68807105 Msa0467490:intron 35.0%
AGGTATGTTCTGTTATCACT+GGG + chr3_3:68807087-68807106 Msa0467490:intron 35.0%
ATGCAAGAATTCCACAATTG+AGG - chr3_3:68807274-68807293 None:intergenic 35.0%
CAATTGTGGAATTCTTGCAT+TGG + chr3_3:68807274-68807293 Msa0467490:CDS 35.0%
GAAAATCCATTCAAAACCTC+AGG - chr3_3:68807355-68807374 None:intergenic 35.0%
! TGTTATCATCCTTGTTATGC+AGG + chr3_3:68807422-68807441 Msa0467490:intron 35.0%
TATTAGCTACTCCTTTGAGT+TGG + chr3_3:68807733-68807752 Msa0467490:three_prime_UTR 35.0%
GGTAAATCTACAACAAGTGT+CGG - chr3_3:68807864-68807883 None:intergenic 35.0%
! TTTTGGCATTTCATCCTTTG+TGG + chr3_3:68807917-68807936 Msa0467490:three_prime_UTR 35.0%
!!! CAACAGTTCGTTTTTTCTGA+TGG + chr3_3:68807979-68807998 Msa0467490:intron 35.0%
CGAATCCAAGCTTCAATCTT+TGG + chr3_3:68803019-68803038 Msa0467490:CDS 40.0%
! CTGTACATCTCTTTTCTCCT+TGG - chr3_3:68803093-68803112 None:intergenic 40.0%
ACACAAACAGCAATCTGATG+TGG - chr3_3:68803163-68803182 None:intergenic 40.0%
!! GACAGTTTTGTCAAGAAGGT+TGG + chr3_3:68803346-68803365 Msa0467490:intron 40.0%
! CCCTCTTTGCTGTGATTAAA+AGG - chr3_3:68803435-68803454 None:intergenic 40.0%
TTAATCACAGCAAAGAGGGA+AGG + chr3_3:68803436-68803455 Msa0467490:intron 40.0%
ATAATCAGAGTCTGCACTTG+AGG - chr3_3:68803504-68803523 None:intergenic 40.0%
AGACTCTGATTATCAGCAGT+TGG + chr3_3:68803511-68803530 Msa0467490:CDS 40.0%
AGTTGGAGAAGCTTCGTATA+TGG + chr3_3:68803528-68803547 Msa0467490:CDS 40.0%
! TGGAGTTCCTTTTCAGCATT+GGG - chr3_3:68803590-68803609 None:intergenic 40.0%
GATTACATCATCAAGTGCCT+GGG - chr3_3:68803642-68803661 None:intergenic 40.0%
TGATTACATCATCAAGTGCC+TGG - chr3_3:68803643-68803662 None:intergenic 40.0%
AAGAAAGTGGCACACATGAA+GGG - chr3_3:68803714-68803733 None:intergenic 40.0%
AAAGAAAGTGGCACACATGA+AGG - chr3_3:68803715-68803734 None:intergenic 40.0%
GAGGATTTAGAAAGTGAGCT+TGG + chr3_3:68803954-68803973 Msa0467490:CDS 40.0%
TTAGAAAGTGAGCTTGGTTG+TGG + chr3_3:68803960-68803979 Msa0467490:CDS 40.0%
CCTTCTCATCAAGATCAACT+TGG - chr3_3:68804344-68804363 None:intergenic 40.0%
!! CCAAGTTGATCTTGATGAGA+AGG + chr3_3:68804341-68804360 Msa0467490:CDS 40.0%
! TCTTTTGAATAAGTGGGGAG+GGG - chr3_3:68804429-68804448 None:intergenic 40.0%
GCAAATGCCAAGATGTTAGA+TGG - chr3_3:68804746-68804765 None:intergenic 40.0%
! CAAGAAGCTGAAGCAGTTTT+TGG + chr3_3:68804894-68804913 Msa0467490:CDS 40.0%
CTAACTCAAAGAAAGGAGAC+AGG + chr3_3:68805016-68805035 Msa0467490:CDS 40.0%
! AAAGAAAGGAGACAGGTTGA+AGG + chr3_3:68805023-68805042 Msa0467490:CDS 40.0%
!! CTGGGATAATTTCTGGTGTT+CGG - chr3_3:68805292-68805311 None:intergenic 40.0%
!! AGTCGGGATTTTGACAACAA+TGG - chr3_3:68805361-68805380 None:intergenic 40.0%
GACTTTACTTCAGGTCGAAA+GGG - chr3_3:68805679-68805698 None:intergenic 40.0%
CAAAATCGGGACTTTACTTC+AGG - chr3_3:68805688-68805707 None:intergenic 40.0%
TGACGCAAGGTTGTCAAAAT+CGG - chr3_3:68805702-68805721 None:intergenic 40.0%
TGAAGATGTGACGACACAAA+TGG - chr3_3:68805763-68805782 None:intergenic 40.0%
TACCTTCGTGACAGTTAAAC+AGG + chr3_3:68805863-68805882 Msa0467490:intron 40.0%
TGACAGTTAAACAGGTGCAA+AGG + chr3_3:68805871-68805890 Msa0467490:intron 40.0%
ATACCTTAAGCTGGATAAGC+TGG - chr3_3:68805987-68806006 None:intergenic 40.0%
CACCACATTATACCTTAAGC+TGG - chr3_3:68805996-68806015 None:intergenic 40.0%
TGAAATGGCAAACAAAGACC+TGG + chr3_3:68806107-68806126 Msa0467490:CDS 40.0%
CATGTGCTAGTCATAAGTCA+TGG + chr3_3:68806206-68806225 Msa0467490:intron 40.0%
TCCTAAGACCAATTCTCTCA+TGG + chr3_3:68806273-68806292 Msa0467490:intron 40.0%
!! ACCATGAGAGAATTGGTCTT+AGG - chr3_3:68806277-68806296 None:intergenic 40.0%
TAAGACCAATTCTCTCATGG+TGG + chr3_3:68806276-68806295 Msa0467490:intron 40.0%
ACAAACCACCATGAGAGAAT+TGG - chr3_3:68806284-68806303 None:intergenic 40.0%
CCTCTCATTGCAAAATGAAG+TGG - chr3_3:68806337-68806356 None:intergenic 40.0%
! CCACTTCATTTTGCAATGAG+AGG + chr3_3:68806334-68806353 Msa0467490:intron 40.0%
! CATTTTGCAATGAGAGGTGA+AGG + chr3_3:68806340-68806359 Msa0467490:intron 40.0%
! GAAACCCCTATTCAAGTTTG+GGG - chr3_3:68806371-68806390 None:intergenic 40.0%
!! CAAAAGCACCGTCTCAAATA+AGG + chr3_3:68806541-68806560 Msa0467490:intron 40.0%
! ATCCCTCACCTTATTTGAGA+CGG - chr3_3:68806552-68806571 None:intergenic 40.0%
ATTAGGAAGTTTGGATGGGA+GGG - chr3_3:68806621-68806640 None:intergenic 40.0%
CTCCATTAGGAAGTTTGGAT+GGG - chr3_3:68806625-68806644 None:intergenic 40.0%
GCGATTCCACACAATGAAAA+TGG + chr3_3:68806790-68806809 Msa0467490:CDS 40.0%
TTGTGGCAACAGACTTATAG+AGG + chr3_3:68806839-68806858 Msa0467490:CDS 40.0%
ATTCATTCTGATTCCGAAGG+TGG + chr3_3:68806884-68806903 Msa0467490:CDS 40.0%
TACCCGATCCTACAGTTATA+AGG + chr3_3:68806910-68806929 Msa0467490:CDS 40.0%
TGCTTGCTTGTATACCATAC+AGG + chr3_3:68807004-68807023 Msa0467490:intron 40.0%
GATGCTGAGTTAGAAATGAG+AGG + chr3_3:68807044-68807063 Msa0467490:CDS 40.0%
ATAAGCTCGACTTATTTGCG+AGG + chr3_3:68807195-68807214 Msa0467490:intron 40.0%
TACTGGCATCTCTCATCATA+CGG + chr3_3:68807225-68807244 Msa0467490:CDS 40.0%
! GAAACGTTTTGCCTCAATTG+TGG + chr3_3:68807260-68807279 Msa0467490:CDS 40.0%
ATTTGGACCGTCCAAATTTG+TGG - chr3_3:68807309-68807328 None:intergenic 40.0%
! ATCCTTGTTATGCAGGATCA+TGG + chr3_3:68807429-68807448 Msa0467490:intron 40.0%
GCACAGTATAATCGAATCTC+AGG + chr3_3:68807685-68807704 Msa0467490:CDS 40.0%
GGAGATATTCGACTGAAAGA+TGG + chr3_3:68807706-68807725 Msa0467490:exon 40.0%
!! AGTTGGCTTGTTTGAGGAAT+TGG + chr3_3:68807750-68807769 Msa0467490:three_prime_UTR 40.0%
GATCTGAAAAATCAGCGCAA+AGG + chr3_3:68807775-68807794 Msa0467490:three_prime_UTR 40.0%
AAACTTCACATTGGCCACAA+AGG - chr3_3:68807934-68807953 None:intergenic 40.0%
CTGGTCCAAAGATTGAAGCT+TGG - chr3_3:68803027-68803046 None:intergenic 45.0%
CTTCAATCTTTGGACCAGCA+AGG + chr3_3:68803029-68803048 Msa0467490:CDS 45.0%
ATGATTTCATCGGTGTGGTC+TGG - chr3_3:68803132-68803151 None:intergenic 45.0%
GCTCTTGCAACCCTTTCAAA+AGG - chr3_3:68803277-68803296 None:intergenic 45.0%
AGAAAGAACGCTCACAGCAA+GGG - chr3_3:68803312-68803331 None:intergenic 45.0%
GACAATCCCCAATGCTGAAA+AGG + chr3_3:68803580-68803599 Msa0467490:CDS 45.0%
! GGAGTTCCTTTTCAGCATTG+GGG - chr3_3:68803589-68803608 None:intergenic 45.0%
! CTGGAGTTCCTTTTCAGCAT+TGG - chr3_3:68803591-68803610 None:intergenic 45.0%
AAAGGAACTCCAGCAAGTCA+AGG + chr3_3:68803598-68803617 Msa0467490:CDS 45.0%
AGCTCAAGTGAAGACTGACA+AGG + chr3_3:68803851-68803870 Msa0467490:CDS 45.0%
AGTGAAGACTGACAAGGAGT+TGG + chr3_3:68803857-68803876 Msa0467490:CDS 45.0%
!! TCTTCTAGAGTCCTCACTTC+TGG - chr3_3:68803990-68804009 None:intergenic 45.0%
! CGAATTTGATGGATGAGCAG+AGG + chr3_3:68804184-68804203 Msa0467490:CDS 45.0%
GATGGATGAGCAGAGGAATA+TGG + chr3_3:68804191-68804210 Msa0467490:CDS 45.0%
! TTTTGAATAAGTGGGGAGGG+GGG - chr3_3:68804427-68804446 None:intergenic 45.0%
! CTTTTGAATAAGTGGGGAGG+GGG - chr3_3:68804428-68804447 None:intergenic 45.0%
ATTCCCTCAACACAGCAAAC+AGG + chr3_3:68804469-68804488 Msa0467490:intron 45.0%
TGACCACGAGTTTGAGAATC+TGG + chr3_3:68804848-68804867 Msa0467490:CDS 45.0%
CAACCAGATTCTCAAACTCG+TGG - chr3_3:68804854-68804873 None:intergenic 45.0%
AACTGCAAAGTTGCGAAACC+AGG + chr3_3:68805079-68805098 Msa0467490:CDS 45.0%
CGAACACCAGAAATTATCCC+AGG + chr3_3:68805290-68805309 Msa0467490:intron 45.0%
ACCAGAAATTATCCCAGGAC+AGG + chr3_3:68805295-68805314 Msa0467490:intron 45.0%
GGACTTTACTTCAGGTCGAA+AGG - chr3_3:68805680-68805699 None:intergenic 45.0%
GACGCAAGGTTGTCAAAATC+GGG - chr3_3:68805701-68805720 None:intergenic 45.0%
! TGGCATAGAAGTATGACGCA+AGG - chr3_3:68805715-68805734 None:intergenic 45.0%
CACCTGTTTAACTGTCACGA+AGG - chr3_3:68805868-68805887 None:intergenic 45.0%
TCTTAAGCAGGCCCAATACA+AGG + chr3_3:68805939-68805958 Msa0467490:CDS 45.0%
TGACCAGCTTATCCAGCTTA+AGG + chr3_3:68805981-68806000 Msa0467490:CDS 45.0%
GTGCATTGTAGTATCTGTCC+AGG - chr3_3:68806128-68806147 None:intergenic 45.0%
! TGGTCTTAGGAGCTCAAAAG+AGG - chr3_3:68806264-68806283 None:intergenic 45.0%
CACCGTCTCAAATAAGGTGA+GGG + chr3_3:68806547-68806566 Msa0467490:intron 45.0%
TTTGAAGGGAGGGAATGAGA+GGG - chr3_3:68806587-68806606 None:intergenic 45.0%
CATTAGGAAGTTTGGATGGG+AGG - chr3_3:68806622-68806641 None:intergenic 45.0%
CTCCCATCCAAACTTCCTAA+TGG + chr3_3:68806620-68806639 Msa0467490:intron 45.0%
GCTCCATTAGGAAGTTTGGA+TGG - chr3_3:68806626-68806645 None:intergenic 45.0%
GCAACAGACTTATAGAGGAC+AGG + chr3_3:68806844-68806863 Msa0467490:CDS 45.0%
AGTCTGCATGAGAACCTGTA+TGG - chr3_3:68807021-68807040 None:intergenic 45.0%
ATACAGGTTCTCATGCAGAC+TGG + chr3_3:68807020-68807039 Msa0467490:intron 45.0%
ATGAGAGGAAGATGTAGTGC+AGG + chr3_3:68807059-68807078 Msa0467490:CDS 45.0%
AAGATGTAGTGCAGGACAGA+AGG + chr3_3:68807067-68807086 Msa0467490:CDS 45.0%
!! CATCATACGGTTGGCTTTAG+CGG + chr3_3:68807238-68807257 Msa0467490:CDS 45.0%
GGATGAGCCAACCACAAATT+TGG + chr3_3:68807295-68807314 Msa0467490:CDS 45.0%
GAGCCAACCACAAATTTGGA+CGG + chr3_3:68807299-68807318 Msa0467490:CDS 45.0%
AAATGCTGAAAGTCTGGCTG+CGG + chr3_3:68807325-68807344 Msa0467490:CDS 45.0%
!!! GGCTATCCTGAGGTTTTGAA+TGG + chr3_3:68807346-68807365 Msa0467490:intron 45.0%
CTCCATGATCCTGCATAACA+AGG - chr3_3:68807434-68807453 None:intergenic 45.0%
! CTTGTTATGCAGGATCATGG+AGG + chr3_3:68807432-68807451 Msa0467490:intron 45.0%
GATAATATCTCTCCGCATGC+TGG - chr3_3:68807534-68807553 None:intergenic 45.0%
GTCGCAAAAGATGACCAGTA+AGG + chr3_3:68807556-68807575 Msa0467490:intron 45.0%
CCTCAAACAAGCCAACTCAA+AGG - chr3_3:68807747-68807766 None:intergenic 45.0%
!! CCTTTGAGTTGGCTTGTTTG+AGG + chr3_3:68807744-68807763 Msa0467490:three_prime_UTR 45.0%
!!! AATTTTGAAAATATTATAAA+AGG - chr3_3:68806492-68806511 None:intergenic 5.0%
! AATCGATTCCAGAGCCTTGC+TGG - chr3_3:68803046-68803065 None:intergenic 50.0%
GAGAAAGAACGCTCACAGCA+AGG - chr3_3:68803313-68803332 None:intergenic 50.0%
AGAGCTGGATCACAAATCCC+AGG + chr3_3:68803622-68803641 Msa0467490:CDS 50.0%
! TGACAAGGAGTTGGTTGAGC+CGG + chr3_3:68803866-68803885 Msa0467490:CDS 50.0%
GAAAGTGAGCTTGGTTGTGG+AGG + chr3_3:68803963-68803982 Msa0467490:CDS 50.0%
ATTGGAGCTCGTTGCATTGC+AGG + chr3_3:68804016-68804035 Msa0467490:CDS 50.0%
TTGGAGCTCGTTGCATTGCA+GGG + chr3_3:68804017-68804036 Msa0467490:CDS 50.0%
AATCGCGGTTGCAGAATGCA+AGG + chr3_3:68804235-68804254 Msa0467490:CDS 50.0%
ATCGCGGTTGCAGAATGCAA+GGG + chr3_3:68804236-68804255 Msa0467490:CDS 50.0%
TTTGAATAAGTGGGGAGGGG+GGG - chr3_3:68804426-68804445 None:intergenic 50.0%
!! GCACCTGTTTGCTGTGTTGA+GGG - chr3_3:68804475-68804494 None:intergenic 50.0%
CAGAGTCTGACTGAAGCCTT+TGG + chr3_3:68804765-68804784 Msa0467490:intron 50.0%
GCGCTTGGATAAAGGTCCAA+AGG - chr3_3:68804784-68804803 None:intergenic 50.0%
AAGTTGCGAAACCAGGATGC+AGG + chr3_3:68805086-68805105 Msa0467490:CDS 50.0%
GCCTGTCCTGGGATAATTTC+TGG - chr3_3:68805299-68805318 None:intergenic 50.0%
AATTATCCCAGGACAGGCAG+AGG + chr3_3:68805301-68805320 Msa0467490:intron 50.0%
GCACCGTCTCAAATAAGGTG+AGG + chr3_3:68806546-68806565 Msa0467490:intron 50.0%
! CTTTGAAGGGAGGGAATGAG+AGG - chr3_3:68806588-68806607 None:intergenic 50.0%
!! ATGTGAGGGCTTTGAAGGGA+GGG - chr3_3:68806597-68806616 None:intergenic 50.0%
!! AATGTGAGGGCTTTGAAGGG+AGG - chr3_3:68806598-68806617 None:intergenic 50.0%
!! GGGAATGTGAGGGCTTTGAA+GGG - chr3_3:68806601-68806620 None:intergenic 50.0%
! AGGGAATGTGAGGGCTTTGA+AGG - chr3_3:68806602-68806621 None:intergenic 50.0%
TTGGATGGGAGGGAATGTGA+GGG - chr3_3:68806611-68806630 None:intergenic 50.0%
TTTGGATGGGAGGGAATGTG+AGG - chr3_3:68806612-68806631 None:intergenic 50.0%
CATTCTGATTCCGAAGGTGG+TGG + chr3_3:68806887-68806906 Msa0467490:CDS 50.0%
CGACTTATTTGCGAGGTTCC+AGG + chr3_3:68807202-68807221 Msa0467490:intron 50.0%
ATTTGCGAGGTTCCAGGTAC+TGG + chr3_3:68807208-68807227 Msa0467490:intron 50.0%
TGATGAGAGATGCCAGTACC+TGG - chr3_3:68807223-68807242 None:intergenic 50.0%
GGCATCTCTCATCATACGGT+TGG + chr3_3:68807229-68807248 Msa0467490:CDS 50.0%
GGACCGTCCAAATTTGTGGT+TGG - chr3_3:68807305-68807324 None:intergenic 50.0%
CGGTCCAAATGCTGAAAGTC+TGG + chr3_3:68807319-68807338 Msa0467490:CDS 50.0%
GCAGCCAGACTTTCAGCATT+TGG - chr3_3:68807326-68807345 None:intergenic 50.0%
TATGCAGGATCATGGAGGAC+AGG + chr3_3:68807437-68807456 Msa0467490:intron 50.0%
AGGATCATGGAGGACAGGAA+AGG + chr3_3:68807442-68807461 Msa0467490:intron 50.0%
!! AGTAGCATTGCTGGCCTTAC+TGG - chr3_3:68807573-68807592 None:intergenic 50.0%
GAATGAAAGGGTTTGTGGCC+TGG + chr3_3:68808015-68808034 Msa0467490:three_prime_UTR 50.0%
TCTTTGGACCAGCAAGGCTC+TGG + chr3_3:68803035-68803054 Msa0467490:CDS 55.0%
!! CCAGCTCTTCCTTGACTTGC+TGG - chr3_3:68803610-68803629 None:intergenic 55.0%
CCAGCAAGTCAAGGAAGAGC+TGG + chr3_3:68803607-68803626 Msa0467490:CDS 55.0%
GTTGTGGAGGACCAGAAGTG+AGG + chr3_3:68803976-68803995 Msa0467490:CDS 55.0%
TTGAATAAGTGGGGAGGGGG+GGG - chr3_3:68804425-68804444 None:intergenic 55.0%
!! GGCACCTGTTTGCTGTGTTG+AGG - chr3_3:68804476-68804495 None:intergenic 55.0%
! AGACAGGTTGAAGGAGCTGC+AGG + chr3_3:68805032-68805051 Msa0467490:CDS 55.0%
AAGAAGCCTCTGCCTGTCCT+GGG - chr3_3:68805310-68805329 None:intergenic 55.0%
AAAGAAGCCTCTGCCTGTCC+TGG - chr3_3:68805311-68805330 None:intergenic 55.0%
GGACAGGCAGAGGCTTCTTT+CGG + chr3_3:68805311-68805330 Msa0467490:intron 55.0%
! CAAGGAGTTGGTTGAGCCGG+TGG + chr3_3:68803869-68803888 Msa0467490:CDS 60.0%
TGAATAAGTGGGGAGGGGGG+GGG - chr3_3:68804424-68804443 None:intergenic 60.0%
CAGGCAGAGGCTTCTTTCGG+AGG + chr3_3:68805314-68805333 Msa0467490:intron 60.0%
GGATCGGGTACCACCACCTT+CGG - chr3_3:68806900-68806919 None:intergenic 60.0%
CATGGAGGACAGGAAAGGCC+AGG + chr3_3:68807447-68807466 Msa0467490:CDS 60.0%
! GATTGGTCAGCGCCAGCATG+CGG + chr3_3:68807519-68807538 Msa0467490:CDS 60.0%
AATAAGTGGGGAGGGGGGGG+GGG - chr3_3:68804422-68804441 None:intergenic 65.0%
GAATAAGTGGGGAGGGGGGG+GGG - chr3_3:68804423-68804442 None:intergenic 65.0%
GTCTGGCTGCGGCTATCCTG+AGG + chr3_3:68807336-68807355 Msa0467490:CDS 65.0%
ATAAGTGGGGAGGGGGGGGG+GGG - chr3_3:68804421-68804440 None:intergenic 70.0%
TAAGTGGGGAGGGGGGGGGG+GGG - chr3_3:68804420-68804439 None:intergenic 75.0%
! AAGTGGGGAGGGGGGGGGGG+GGG - chr3_3:68804419-68804438 None:intergenic 80.0%
! AGTGGGGAGGGGGGGGGGGG+GGG - chr3_3:68804418-68804437 None:intergenic 85.0%
! TGGGGAGGGGGGGGGGGGGG+GGG - chr3_3:68804416-68804435 None:intergenic 90.0%
! GTGGGGAGGGGGGGGGGGGG+GGG - chr3_3:68804417-68804436 None:intergenic 90.0%
! AGGGGGGGGGGGGGGGGGGG+GGG - chr3_3:68804411-68804430 None:intergenic 95.0%
! GAGGGGGGGGGGGGGGGGGG+GGG - chr3_3:68804412-68804431 None:intergenic 95.0%
! GGAGGGGGGGGGGGGGGGGG+GGG - chr3_3:68804413-68804432 None:intergenic 95.0%
! GGGAGGGGGGGGGGGGGGGG+GGG - chr3_3:68804414-68804433 None:intergenic 95.0%
! GGGGAGGGGGGGGGGGGGGG+GGG - chr3_3:68804415-68804434 None:intergenic 95.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 68803005 68808042 68803005 ID=Msa0467490;Name=Msa0467490
chr3_3 mRNA 68803005 68808042 68803005 ID=Msa0467490-mRNA-1;Parent=Msa0467490;Name=Msa0467490-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0.92|0.86|1|0.92|0.8|15|298|662
chr3_3 exon 68803005 68803117 68803005 ID=Msa0467490-mRNA-1:exon:16087;Parent=Msa0467490-mRNA-1
chr3_3 exon 68803234 68803363 68803234 ID=Msa0467490-mRNA-1:exon:16088;Parent=Msa0467490-mRNA-1
chr3_3 exon 68803446 68803655 68803446 ID=Msa0467490-mRNA-1:exon:16089;Parent=Msa0467490-mRNA-1
chr3_3 exon 68803837 68804045 68803837 ID=Msa0467490-mRNA-1:exon:16090;Parent=Msa0467490-mRNA-1
chr3_3 exon 68804161 68804362 68804161 ID=Msa0467490-mRNA-1:exon:16091;Parent=Msa0467490-mRNA-1
chr3_3 exon 68804768 68804937 68804768 ID=Msa0467490-mRNA-1:exon:16092;Parent=Msa0467490-mRNA-1
chr3_3 exon 68805011 68805269 68805011 ID=Msa0467490-mRNA-1:exon:16093;Parent=Msa0467490-mRNA-1
chr3_3 exon 68805877 68806002 68805877 ID=Msa0467490-mRNA-1:exon:16094;Parent=Msa0467490-mRNA-1
chr3_3 exon 68806102 68806154 68806102 ID=Msa0467490-mRNA-1:exon:16095;Parent=Msa0467490-mRNA-1
chr3_3 exon 68806781 68806931 68806781 ID=Msa0467490-mRNA-1:exon:16096;Parent=Msa0467490-mRNA-1
chr3_3 exon 68807026 68807088 68807026 ID=Msa0467490-mRNA-1:exon:16097;Parent=Msa0467490-mRNA-1
chr3_3 exon 68807224 68807357 68807224 ID=Msa0467490-mRNA-1:exon:16098;Parent=Msa0467490-mRNA-1
chr3_3 exon 68807444 68807572 68807444 ID=Msa0467490-mRNA-1:exon:16099;Parent=Msa0467490-mRNA-1
chr3_3 exon 68807682 68807968 68807682 ID=Msa0467490-mRNA-1:exon:16100;Parent=Msa0467490-mRNA-1
chr3_3 exon 68807992 68808042 68807992 ID=Msa0467490-mRNA-1:exon:16101;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68803005 68803117 68803005 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68803234 68803363 68803234 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68803446 68803655 68803446 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68803837 68804045 68803837 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68804161 68804362 68804161 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68804768 68804937 68804768 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68805011 68805269 68805011 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68805877 68806002 68805877 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68806102 68806154 68806102 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68806781 68806931 68806781 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68807026 68807088 68807026 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68807224 68807357 68807224 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68807444 68807572 68807444 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 CDS 68807682 68807721 68807682 ID=Msa0467490-mRNA-1:cds;Parent=Msa0467490-mRNA-1
chr3_3 three_prime_UTR 68807722 68807968 68807722 ID=Msa0467490-mRNA-1:three_prime_utr;Parent=Msa0467490-mRNA-1
chr3_3 three_prime_UTR 68807992 68808042 68807992 ID=Msa0467490-mRNA-1:three_prime_utr;Parent=Msa0467490-mRNA-1
Gene Sequence

>Msa0467490

AGAAAGAAATTTATCGAATCCAAGCTTCAATCTTTGGACCAGCAAGGCTCTGGAATCGATTCTTATCTAAAACTTTTAGAGTCTGCCAAGGAGAAAAGAGATGTACAGAAAAGCAAATATAACATTGCAGATGGTATGCGACAAATGTTTGATCCTTTTGAAAGGGTTGCAAGAGCTCATCATTTTTGCCCTTGCTGTGAGCGTTCTTTCTCCGCAGAAGAAGAAGACAGTTTTGTCAAGAAGCAAAGAGGGAAGGCTGCTAGTTCAGCTGAACATTTGAAAATTCTTGCTGTGGAGTCCTCAAGTGCAGACTCTGATTATCAGCAGTTGGAGAAGCTTCGTATATGGTATGAAGAATATGTTAAACTTAGCAAGGAGACAATCCCCAATGCTGAAAAGGAACTCCAGCAAGTCAAGGAAGAGCTGGATCACAAATCCCAGGCACTTGATGATGTTTTAGGTATTTTAGCTCAAGTGAAGACTGACAAGGAGTTGGTTGAGCCGGTGGTGAAATATGTTGAACATGCTGATCGAATTTTCCTCGAAATTCAAACTTTGCAAAAGAAAGTTGAGGATTTAGAAAGTGAGCTTGGTTGTGGAGGACCAGAAGTGAGGACTCTAGAAGAAATTCAATTGGAGCTCGTTGCATTGCAGGGAACAAAGGACAATTTGCATACTGAGTTGACGAATTTGATGGATGAGCAGAGGAATATGGATACTGATATATCAGGTATTCAATCGCGGTTGCAGAATGCAAGGGCTGATAAAATGAATGCAGCTATGAAATTGCAAGATGTAAAAAGATTAGAAGAAGAATTAGAACGACTGACAGAAGAAATGACCCAAGTTGATCTTGATGAGAAGAGTCTGACTGAAGCCTTTGGACCTTTATCCAAGCGCAAAGATAAAATACGTGCTGACTATAATGAATTGAAACTTAGACTTGACCACGAGTTTGAGAATCTGGTTGAAAAAAAGAGAATTTATCAGCAAGAAGCTGAAGCAGTTTTTGGAATGACTTCTAAGATCAAAGAGTACTCTAACTCAAAGAAAGGAGACAGGTTGAAGGAGCTGCAGGAAAAGAAATCTCTATTAGAATCTCAACTGCAAAGTTGCGAAACCAGGATGCAGGAAATTATAGATGAACTAGACAAAAGGAAAGATTTGTTGCGAAATACTGATTCGCTTAGAAGAAAAATTGAGGACAACTTAAATTACAGAAAAACAAAGGCTGAAGTAGATGAGCTTGAACGTGAAATTGAAATACTTGAAGAAAATATGTTGAAGATTGGTTTAAACAGGTGCAAAGGAACAATAGATGTTTACCAAAGCAATATTTCCAAAAATAAGATTGATCTTAAGCAGGCCCAATACAAGGACATAGATAAGCGATATTTTGACCAGCTTATCCAGCTTAAGACAACTGAAATGGCAAACAAAGACCTGGACAGATACTACAATGCACTTGACAAAGCACTGATGCGATTCCACACAATGAAAATGGAAGAAATCAACAAAATTATAAGAGAATTGTGGCAACAGACTTATAGAGGACAGGATATTGACTGCATTAGTATTCATTCTGATTCCGAAGGTGGTGGTACCCGATCCTACAGTTATAAGGTTCTCATGCAGACTGGTGATGCTGAGTTAGAAATGAGAGGAAGATGTAGTGCAGGACAGAAGGTACTGGCATCTCTCATCATACGGTTGGCTTTAGCGGAAACGTTTTGCCTCAATTGTGGAATTCTTGCATTGGATGAGCCAACCACAAATTTGGACGGTCCAAATGCTGAAAGTCTGGCTGCGGCTATCCTGAGGATCATGGAGGACAGGAAAGGCCAGGAAAATTTTCAGCTAATTGTAATTACTCATGACGAGCGTTTTGCTCAACTGATTGGTCAGCGCCAGCATGCGGAGAGATATTATCGAGTCGCAAAAGATGACCATCAGCACAGTATAATCGAATCTCAGGAGATATTCGACTGA

Protein sequence

>Msa0467490

RKKFIESKLQSLDQQGSGIDSYLKLLESAKEKRDVQKSKYNIADGMRQMFDPFERVARAHHFCPCCERSFSAEEEDSFVKKQRGKAASSAEHLKILAVESSSADSDYQQLEKLRIWYEEYVKLSKETIPNAEKELQQVKEELDHKSQALDDVLGILAQVKTDKELVEPVVKYVEHADRIFLEIQTLQKKVEDLESELGCGGPEVRTLEEIQLELVALQGTKDNLHTELTNLMDEQRNMDTDISGIQSRLQNARADKMNAAMKLQDVKRLEEELERLTEEMTQVDLDEKSLTEAFGPLSKRKDKIRADYNELKLRLDHEFENLVEKKRIYQQEAEAVFGMTSKIKEYSNSKKGDRLKELQEKKSLLESQLQSCETRMQEIIDELDKRKDLLRNTDSLRRKIEDNLNYRKTKAEVDELEREIEILEENMLKIGLNRCKGTIDVYQSNISKNKIDLKQAQYKDIDKRYFDQLIQLKTTEMANKDLDRYYNALDKALMRFHTMKMEEINKIIRELWQQTYRGQDIDCISIHSDSEGGGTRSYSYKVLMQTGDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAAILRIMEDRKGQENFQLIVITHDERFAQLIGQRQHAERYYRVAKDDHQHSIIESQEIFD*