AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0459010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459010 MtrunA17_Chr3g0106761 94.149 376 22 0 1 376 32 407 0.0 742
Msa0459010 MtrunA17_Chr3g0106741 93.617 376 24 0 1 376 63 438 0.0 734
Msa0459010 MtrunA17_Chr3g0106691 67.895 380 113 5 1 375 132 507 0.0 539
Msa0459010 MtrunA17_Chr3g0106661 64.062 384 127 6 1 375 86 467 5.35e-177 500
Msa0459010 MtrunA17_Chr3g0106721 64.286 364 118 3 1 361 86 440 2.35e-170 483
Msa0459010 MtrunA17_Chr6g0470591 57.520 379 145 9 3 372 91 462 5.58e-146 421
Msa0459010 MtrunA17_Chr4g0027071 51.309 382 160 10 6 375 91 458 1.89e-127 374
Msa0459010 MtrunA17_Chr3g0106701 66.279 172 55 2 206 375 1 171 1.19e-77 236
Msa0459010 MtrunA17_Chr3g0106631 69.595 148 45 0 66 213 2 149 4.90e-74 227
Msa0459010 MtrunA17_Chr3g0106711 69.863 146 40 2 1 143 87 231 5.31e-70 219
Msa0459010 MtrunA17_Chr2g0283361 32.162 370 227 12 9 370 82 435 2.63e-55 187
Msa0459010 MtrunA17_Chr3g0106621 57.031 128 46 2 248 375 2 120 6.22e-43 145
Msa0459010 MtrunA17_Chr7g0224391 31.193 327 187 15 5 316 89 392 7.39e-31 122
Msa0459010 MtrunA17_Chr8g0386141 27.907 387 225 15 2 370 77 427 1.75e-30 121
Msa0459010 MtrunA17_Chr3g0132001 28.612 353 223 14 22 367 100 430 1.02e-28 115
Msa0459010 MtrunA17_Chr7g0270771 34.112 214 120 8 2 211 73 269 1.78e-28 112
Msa0459010 MtrunA17_Chr2g0306321 27.596 366 223 16 2 347 96 439 1.05e-26 110
Msa0459010 MtrunA17_Chr3g0141851 23.894 339 216 9 6 327 88 401 1.19e-26 110
Msa0459010 MtrunA17_Chr5g0433641 25.776 322 218 8 2 316 83 390 3.82e-25 106
Msa0459010 MtrunA17_Chr1g0165681 30.466 279 167 8 9 276 89 351 6.73e-25 105
Msa0459010 MtrunA17_Chr1g0165661 29.154 319 195 10 9 316 89 387 7.67e-25 105
Msa0459010 MtrunA17_Chr1g0165671 26.525 377 236 12 9 372 107 455 2.18e-24 104
Msa0459010 MtrunA17_Chr1g0191081 26.823 384 241 15 2 372 91 447 2.58e-24 103
Msa0459010 MtrunA17_Chr8g0371821 28.873 284 179 10 7 281 79 348 2.54e-23 100
Msa0459010 MtrunA17_Chr3g0113821 26.301 365 223 15 5 342 82 427 4.98e-23 99.8
Msa0459010 MtrunA17_Chr7g0273721 26.543 324 214 10 2 316 84 392 7.85e-23 99.4
Msa0459010 MtrunA17_Chr2g0334001 24.054 370 227 14 2 339 74 421 3.65e-22 97.4
Msa0459010 MtrunA17_Chr7g0273761 26.462 325 213 11 2 316 455 763 1.15e-21 97.1
Msa0459010 MtrunA17_Chr7g0273761 27.273 319 197 13 65 372 32 326 1.91e-18 87.4
Msa0459010 MtrunA17_Chr4g0001861 26.586 331 202 14 2 311 74 384 1.45e-21 95.5
Msa0459010 MtrunA17_Chr7g0273781 26.791 321 215 8 2 316 116 422 1.21e-20 93.2
Msa0459010 MtrunA17_Chr6g0471971 32.275 189 116 5 82 266 3 183 7.71e-20 87.4
Msa0459010 MtrunA17_Chr1g0165711 28.295 258 152 8 9 254 89 325 8.05e-20 90.5
Msa0459010 MtrunA17_Chr7g0273791 27.562 283 185 7 2 276 83 353 1.58e-19 89.7
Msa0459010 MtrunA17_Chr3g0087401 24.478 335 207 13 11 311 79 401 3.43e-19 88.6
Msa0459010 MtrunA17_Chr2g0311401 23.684 304 189 10 64 340 5 292 2.02e-18 84.7
Msa0459010 MtrunA17_Chr7g0273731 26.316 323 214 9 2 316 166 472 2.07e-18 86.7
Msa0459010 MtrunA17_Chr7g0253541 27.273 341 211 14 10 324 88 417 1.17e-17 84.3
Msa0459010 MtrunA17_Chr4g0054081 28.044 271 161 12 7 259 88 342 6.44e-17 82.0
Msa0459010 MtrunA17_Chr4g0072041 26.394 269 177 8 2 259 88 346 3.83e-16 79.7
Msa0459010 MtrunA17_Chr7g0253531 26.000 350 196 20 8 312 79 410 8.76e-16 78.6
Msa0459010 MtrunA17_Chr5g0442721 24.586 362 233 12 8 341 91 440 1.27e-13 72.0
Msa0459010 MtrunA17_Chr3g0134121 27.119 236 155 7 22 249 109 335 1.21e-12 68.9
Msa0459010 MtrunA17_Chr4g0010331 26.953 256 167 9 1 247 75 319 1.87e-12 68.2
Msa0459010 MtrunA17_Chr3g0134091 28.351 194 121 5 62 249 153 334 2.23e-12 68.2
Msa0459010 MtrunA17_Chr4g0010351 26.459 257 171 7 1 246 75 324 1.10e-11 65.9
Msa0459010 MtrunA17_Chr3g0134041 26.820 261 141 11 12 249 99 332 1.85e-11 65.1
Msa0459010 MtrunA17_Chr5g0442691 26.132 287 190 9 8 279 113 392 4.92e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0459010 AT2G25150.1 38.630 365 202 11 22 375 102 455 9.95e-72 231
Msa0459010 AT2G23510.1 38.158 380 207 14 3 372 89 450 7.26e-71 229
Msa0459010 AT5G07080.1 37.209 387 198 14 3 372 90 448 1.91e-70 228
Msa0459010 AT3G47170.1 35.443 395 211 15 3 372 90 465 9.33e-64 211
Msa0459010 AT1G28680.1 33.687 377 224 11 3 370 82 441 4.48e-63 208
Msa0459010 AT1G28680.2 35.294 289 165 9 3 282 82 357 8.91e-52 177
Msa0459010 AT5G41040.1 28.075 374 229 14 7 368 108 453 6.40e-36 136
Msa0459010 AT5G41040.2 28.075 374 229 14 7 368 92 437 7.74e-36 136
Msa0459010 AT3G48720.1 29.412 374 224 17 5 367 82 426 4.15e-33 128
Msa0459010 AT3G62160.1 27.273 341 190 11 2 320 73 377 1.47e-31 124
Msa0459010 AT5G63560.1 29.070 344 201 15 7 336 84 398 1.47e-26 110
Msa0459010 AT3G03480.1 27.445 317 207 9 2 311 91 391 2.16e-26 110
Msa0459010 AT1G27620.1 26.513 347 207 10 2 327 76 395 2.94e-25 106
Msa0459010 AT5G17540.1 26.562 320 207 9 2 311 81 382 1.29e-23 102
Msa0459010 AT2G40230.1 26.970 330 213 13 8 326 85 397 1.32e-22 99.0
Msa0459010 AT5G48930.1 24.773 331 208 11 2 311 74 384 3.34e-22 97.8
Msa0459010 AT1G03390.1 25.342 292 201 11 62 347 157 437 5.09e-19 88.6
Msa0459010 AT2G19070.1 31.359 287 168 14 8 277 82 356 7.54e-18 85.1
Msa0459010 AT1G65450.1 25.157 318 208 11 8 311 97 398 9.58e-17 81.6
Msa0459010 AT5G07860.1 29.310 174 105 6 62 230 156 316 1.03e-11 66.6
Msa0459010 AT1G32910.1 25.503 298 192 10 8 290 89 371 2.80e-11 65.1
Msa0459010 AT1G24430.1 22.295 305 190 13 12 308 87 352 4.71e-11 64.3

Find 99 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTTACCTAATGGTTATTA+TGG 0.094646 3_3:-55309934 Msa0459010:CDS
CATCTTTGATTTCAAGCTTT+AGG 0.204720 3_3:+55311424 None:intergenic
CTGACAGAGTGGAAACATTT+AGG 0.237890 3_3:-55309715 Msa0459010:CDS
CCTTTCTTCTGTTAATTACT+TGG 0.244140 3_3:-55310499 Msa0459010:CDS
AAGCCTTTGAAAGCGCTTCT+TGG 0.244733 3_3:+55311240 None:intergenic
TCATCATTGTCAAATTTATT+AGG 0.246582 3_3:+55309589 None:intergenic
TCCTTGTTCATAGGGCATTC+TGG 0.255669 3_3:+55310216 None:intergenic
TTGTAGTGTTGTCTTGATTC+AGG 0.259276 3_3:+55310172 None:intergenic
ATCTTTGATTTCAAGCTTTA+GGG 0.261824 3_3:+55311425 None:intergenic
CTTGATGGAGATGTAGATTT+TGG 0.274005 3_3:-55309688 Msa0459010:CDS
TTAACCCCTCCTTTCATTGA+TGG 0.282796 3_3:+55309565 None:intergenic
AAATTATGGTGTTCCATTCT+TGG 0.284915 3_3:-55310541 Msa0459010:CDS
GCAACGGATTCCTTGTTCAT+AGG 0.293428 3_3:+55310207 None:intergenic
ACAATTCATGATTCTGATTC+GGG 0.295244 3_3:-55311284 Msa0459010:five_prime_UTR
TGGGAAAGAGAGAGACTTAT+TGG 0.299884 3_3:-55310261 Msa0459010:CDS
TTCAATTTCCTCCTTGAACT+TGG 0.303476 3_3:+55309510 None:intergenic
AATCCTAATGCAGAAAATTA+TGG 0.321826 3_3:-55310555 Msa0459010:CDS
AACTTGGGCATGGCAGCAAC+AGG 0.339188 3_3:+55309526 None:intergenic
AACAATTCATGATTCTGATT+CGG 0.342734 3_3:-55311285 Msa0459010:five_prime_UTR
CTTTACCTAATGGTTATTAT+GGG 0.350671 3_3:-55309933 Msa0459010:CDS
AACTTACCCTTTGGTGTTCA+AGG 0.353325 3_3:-55310424 Msa0459010:CDS
TCCCCTTGCAAGTTCGATAA+TGG 0.359679 3_3:+55310311 None:intergenic
TTCATAGGGCATTCTGGAAA+TGG 0.370345 3_3:+55310222 None:intergenic
CACAGAAATTGCAAAGCATT+TGG 0.379681 3_3:-55310466 Msa0459010:CDS
TTAGCAATTGCTTCCAAGAA+TGG 0.403315 3_3:+55310528 None:intergenic
GGAGGTTTCACAATCGGAAT+GGG 0.409540 3_3:-55310384 Msa0459010:CDS
TGCTGCCATGCCCAAGTTCA+AGG 0.433774 3_3:-55309521 Msa0459010:CDS
AAGGCAACTTCAACTGATCT+TGG 0.434474 3_3:+55309455 None:intergenic
TGAAGACAAAACTTACCCTT+TGG 0.442212 3_3:-55310433 Msa0459010:CDS
TCAATTTCCTCCTTGAACTT+GGG 0.445520 3_3:+55309511 None:intergenic
GAATTCCCATAATAACCATT+AGG 0.456288 3_3:+55309928 None:intergenic
CGTTGCGGAGGTTTCACAAT+CGG 0.459106 3_3:-55310390 Msa0459010:CDS
GCTTAAGTTGAGTTTGATGA+AGG 0.461955 3_3:-55310103 Msa0459010:CDS
ATGCAACTTATTTGCATCCA+TGG 0.474301 3_3:-55309632 Msa0459010:CDS
TGGTATTAGACGCAACTTGA+AGG 0.474505 3_3:-55309965 Msa0459010:CDS
CCAAGTAATTAACAGAAGAA+AGG 0.479071 3_3:+55310499 None:intergenic
GTATGAAGAAGATGATGTAT+TGG 0.479557 3_3:+55309256 None:intergenic
CGAATTATAATGAGGAATCC+AGG 0.483880 3_3:-55309765 Msa0459010:CDS
CAAGTAATTAACAGAAGAAA+GGG 0.485197 3_3:+55310500 None:intergenic
GCAAATAAGTTGCATGGTGC+TGG 0.486773 3_3:+55309640 None:intergenic
CAACGGATTCCTTGTTCATA+GGG 0.488857 3_3:+55310208 None:intergenic
TTGAGTTTGATGAAGGAAAG+TGG 0.489083 3_3:-55310096 Msa0459010:CDS
TTGTCACCTTGAACACCAAA+GGG 0.494129 3_3:+55310418 None:intergenic
GAAAGAGAAAGAATACAAGA+AGG 0.514075 3_3:+55311372 None:intergenic
ATGCTTTGCAATTTCTGTGT+CGG 0.522721 3_3:+55310470 None:intergenic
CCATAATAACCATTAGGTAA+AGG 0.523441 3_3:+55309934 None:intergenic
ACATCATAATTGAAACACTA+AGG 0.527670 3_3:+55309436 None:intergenic
CGGAGGTTTCACAATCGGAA+TGG 0.531324 3_3:-55310385 Msa0459010:CDS
TTCCTCCTTGAACTTGGGCA+TGG 0.531730 3_3:+55309516 None:intergenic
GCTACGTCTTGCAGGTAGAA+TGG 0.535910 3_3:-55310616 Msa0459010:intron
TTTGTCACCTTGAACACCAA+AGG 0.540211 3_3:+55310417 None:intergenic
TCATTGTCAAATTTATTAGG+AGG 0.540817 3_3:+55309592 None:intergenic
ATGGTGAAACATGCTGATGA+TGG 0.543171 3_3:-55310597 Msa0459010:CDS
TGTCAGAACCGTTACTGCAC+CGG 0.546059 3_3:+55309732 None:intergenic
AGCTTAATAATTTCATAGAG+TGG 0.547793 3_3:+55309856 None:intergenic
AAGCCATTATCGAACTTGCA+AGG 0.551949 3_3:-55310314 Msa0459010:CDS
AGCCATTATCGAACTTGCAA+GGG 0.556732 3_3:-55310313 Msa0459010:CDS
ATGATCCATCAATGAAAGGA+GGG 0.556848 3_3:-55309570 Msa0459010:CDS
TGCACCGGTACTTAGCATCC+TGG 0.556922 3_3:+55309747 None:intergenic
AATCATGAATTGTTGATGAT+CGG 0.560358 3_3:+55311294 None:intergenic
GCTAAGTACCGGTGCAGTAA+CGG 0.563669 3_3:-55309740 Msa0459010:CDS
AATGATGATCCATCAATGAA+AGG 0.575055 3_3:-55309574 Msa0459010:CDS
TCCAGAATGCCCTATGAACA+AGG 0.582940 3_3:-55310217 Msa0459010:CDS
GAGGTTTCACAATCGGAATG+GGG 0.593146 3_3:-55310383 Msa0459010:CDS
GTGTTGTCTTGATTCAGGTA+AGG 0.593872 3_3:+55310177 None:intergenic
ATTCCAAGAAGCGCTTTCAA+AGG 0.593983 3_3:-55311243 Msa0459010:five_prime_UTR
TACATGAACAGTTTGAGCAA+AGG 0.595135 3_3:+55311319 None:intergenic
TCCCACACAGGTATCGTCGA+GGG 0.595299 3_3:+55310279 None:intergenic
GAAAATGTTTATAAGAAATG+TGG 0.596448 3_3:+55311468 None:intergenic
GTGACAAAATTTCGTTGCGG+AGG 0.602288 3_3:-55310402 Msa0459010:CDS
GTGTTGCACGCTATCTGTGA+CGG 0.602692 3_3:-55310360 Msa0459010:CDS
GCGTCTAATACCAGCTACAA+TGG 0.604485 3_3:+55309975 None:intergenic
TAGTAGTGAAGTGCTTGTAA+TGG 0.608350 3_3:-55309311 Msa0459010:three_prime_UTR
AAGTTAGTGAGCTTGATGAA+AGG 0.608750 3_3:-55309879 Msa0459010:CDS
GAATCCAGGATGCTAAGTAC+CGG 0.609500 3_3:-55309751 Msa0459010:CDS
CAGGTAAGGTGAAAATGCAA+CGG 0.615018 3_3:+55310191 None:intergenic
AGGTTTCACAATCGGAATGG+GGG 0.619066 3_3:-55310382 Msa0459010:CDS
AACCCTCGACGATACCTGTG+TGG 0.622732 3_3:-55310281 Msa0459010:CDS
TTCCCACACAGGTATCGTCG+AGG 0.623361 3_3:+55310278 None:intergenic
CACGCTATCTGTGACGGAGT+TGG 0.625478 3_3:-55310354 Msa0459010:CDS
AATCAATTGCAGGTTATGTG+TGG 0.626010 3_3:-55310050 Msa0459010:CDS
GATGATCCATCAATGAAAGG+AGG 0.631222 3_3:-55309571 Msa0459010:CDS
GCCATTATCGAACTTGCAAG+GGG 0.631450 3_3:-55310312 Msa0459010:CDS
TGGAGGGTGAAATGATAACA+AGG 0.634756 3_3:-55310125 Msa0459010:CDS
GTTGGAGACGAATTATAATG+AGG 0.634795 3_3:-55309773 Msa0459010:CDS
AGTCTCTCTCTTTCCCACAC+AGG 0.635132 3_3:+55310267 None:intergenic
GCCTTAAAACTTAACAACAA+TGG 0.636178 3_3:-55310012 Msa0459010:CDS
ACAGTGCTGACCATTGTAGC+TGG 0.644789 3_3:-55309985 Msa0459010:CDS
CAATTGCAGGTTATGTGTGG+AGG 0.645568 3_3:-55310047 Msa0459010:CDS
ACTTGGGCATGGCAGCAACA+GGG 0.648417 3_3:+55309527 None:intergenic
TGTTTATAAGAAATGTGGCA+AGG 0.650867 3_3:+55311473 None:intergenic
TGATCCATCAATGAAAGGAG+GGG 0.653576 3_3:-55309569 Msa0459010:CDS
CAGTAACGGTTCTGACAGAG+TGG 0.654388 3_3:-55309726 Msa0459010:CDS
ACCCTCGACGATACCTGTGT+GGG 0.660118 3_3:-55310280 Msa0459010:CDS
TTATTATGGGAATTCATGTG+TGG 0.669469 3_3:-55309920 Msa0459010:CDS
ATGGATGCAAATAAGTTGCA+TGG 0.677710 3_3:+55309634 None:intergenic
CTTGGAATACATGACAAGCG+TGG 0.703947 3_3:+55311258 None:intergenic
TGCCATGCCCAAGTTCAAGG+AGG 0.747229 3_3:-55309518 Msa0459010:CDS
AAGGTGACAAAATTTCGTTG+CGG 0.748989 3_3:-55310405 Msa0459010:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATATAAACCTTTAAAATA+GGG - chr3_3:55309582-55309601 Msa0459010:CDS 10.0%
!! TGAAATTCTAAATATTTATA+AGG + chr3_3:55309669-55309688 None:intergenic 10.0%
!!! TTTAGTTTAAATATGTTTTT+CGG + chr3_3:55309910-55309929 None:intergenic 10.0%
!!! TTTTATAAAAAATTCAAAAG+TGG + chr3_3:55310000-55310019 None:intergenic 10.0%
!!! CTTTTGAATTTTTTATAAAA+TGG - chr3_3:55310000-55310019 Msa0459010:CDS 10.0%
!!! TAATATAAACCTTTAAAATA+GGG - chr3_3:55309582-55309601 Msa0459010:CDS 10.0%
!! TGAAATTCTAAATATTTATA+AGG + chr3_3:55309669-55309688 None:intergenic 10.0%
!!! TTTAGTTTAAATATGTTTTT+CGG + chr3_3:55309910-55309929 None:intergenic 10.0%
!!! TTTTATAAAAAATTCAAAAG+TGG + chr3_3:55310000-55310019 None:intergenic 10.0%
!!! CTTTTGAATTTTTTATAAAA+TGG - chr3_3:55310000-55310019 Msa0459010:CDS 10.0%
!!! ATTTTAAAGGTTTATATTAG+AGG + chr3_3:55309581-55309600 None:intergenic 15.0%
!!! CTAATATAAACCTTTAAAAT+AGG - chr3_3:55309581-55309600 Msa0459010:CDS 15.0%
!!! ATAAATTTTGATAAAATTCC+TGG - chr3_3:55309625-55309644 Msa0459010:CDS 15.0%
!!! TAAATTTTGATAAAATTCCT+GGG - chr3_3:55309626-55309645 Msa0459010:CDS 15.0%
!! CAAAAAAAAAAAAATTGCAA+AGG - chr3_3:55309973-55309992 Msa0459010:CDS 15.0%
!!! GAAGAAATATTGTTTTAATA+TGG - chr3_3:55310563-55310582 Msa0459010:CDS 15.0%
!!! AAATATTGTTTTAATATGGA+GGG - chr3_3:55310567-55310586 Msa0459010:CDS 15.0%
!!! ATTTTAAAGGTTTATATTAG+AGG + chr3_3:55309581-55309600 None:intergenic 15.0%
!!! CTAATATAAACCTTTAAAAT+AGG - chr3_3:55309581-55309600 Msa0459010:CDS 15.0%
!!! ATAAATTTTGATAAAATTCC+TGG - chr3_3:55309625-55309644 Msa0459010:CDS 15.0%
!!! TAAATTTTGATAAAATTCCT+GGG - chr3_3:55309626-55309645 Msa0459010:CDS 15.0%
!! CAAAAAAAAAAAAATTGCAA+AGG - chr3_3:55309973-55309992 Msa0459010:CDS 15.0%
!!! GAAGAAATATTGTTTTAATA+TGG - chr3_3:55310563-55310582 Msa0459010:CDS 15.0%
!!! AAATATTGTTTTAATATGGA+GGG - chr3_3:55310567-55310586 Msa0459010:CDS 15.0%
!! GAAAATGTTTATAAGAAATG+TGG + chr3_3:55309243-55309262 None:intergenic 20.0%
!!! TTTCTTATAAACATTTTCGA+TGG - chr3_3:55309245-55309264 Msa0459010:three_prime_UTR 20.0%
!!! AAATTAGTGTTGTTAAAACA+TGG - chr3_3:55309552-55309571 Msa0459010:CDS 20.0%
!!! TGCTGATAGAAAATTTTAAA+GGG + chr3_3:55309758-55309777 None:intergenic 20.0%
!!! ATTTTCGTTTAGCTTTTTTA+TGG + chr3_3:55309819-55309838 None:intergenic 20.0%
!! ACAAAATTGTGAATATTTAC+AGG - chr3_3:55309882-55309901 Msa0459010:CDS 20.0%
!! CAAAATTGTGAATATTTACA+GGG - chr3_3:55309883-55309902 Msa0459010:CDS 20.0%
!!! GAAATATTGTTTTAATATGG+AGG - chr3_3:55310566-55310585 Msa0459010:CDS 20.0%
!! TCATCATTGTCAAATTTATT+AGG + chr3_3:55311122-55311141 None:intergenic 20.0%
!!! CTTTTCATCAAAAAACAAAT+TGG - chr3_3:55311492-55311511 Msa0459010:five_prime_UTR 20.0%
!! GAAAATGTTTATAAGAAATG+TGG + chr3_3:55309243-55309262 None:intergenic 20.0%
!!! TTTCTTATAAACATTTTCGA+TGG - chr3_3:55309245-55309264 Msa0459010:three_prime_UTR 20.0%
!!! AAATTAGTGTTGTTAAAACA+TGG - chr3_3:55309552-55309571 Msa0459010:CDS 20.0%
!!! TGCTGATAGAAAATTTTAAA+GGG + chr3_3:55309758-55309777 None:intergenic 20.0%
!!! ATTTTCGTTTAGCTTTTTTA+TGG + chr3_3:55309819-55309838 None:intergenic 20.0%
!! ACAAAATTGTGAATATTTAC+AGG - chr3_3:55309882-55309901 Msa0459010:CDS 20.0%
!! CAAAATTGTGAATATTTACA+GGG - chr3_3:55309883-55309902 Msa0459010:CDS 20.0%
!!! GAAATATTGTTTTAATATGG+AGG - chr3_3:55310566-55310585 Msa0459010:CDS 20.0%
!! TCATCATTGTCAAATTTATT+AGG + chr3_3:55311122-55311141 None:intergenic 20.0%
!!! CTTTTCATCAAAAAACAAAT+TGG - chr3_3:55311492-55311511 Msa0459010:five_prime_UTR 20.0%
!! ATCTTTGATTTCAAGCTTTA+GGG + chr3_3:55309286-55309305 None:intergenic 25.0%
!!! AATCATGAATTGTTGATGAT+CGG + chr3_3:55309417-55309436 None:intergenic 25.0%
! AACAATTCATGATTCTGATT+CGG - chr3_3:55309423-55309442 Msa0459010:three_prime_UTR 25.0%
!! TTTTATTATTATCCACTTGC+AGG - chr3_3:55309493-55309512 Msa0459010:CDS 25.0%
!!! GTGCTGATAGAAAATTTTAA+AGG + chr3_3:55309759-55309778 None:intergenic 25.0%
!! ATGCTAGAGAAAATTTTACA+AGG + chr3_3:55309789-55309808 None:intergenic 25.0%
! AAGCTAAACGAAAATATTAC+AGG - chr3_3:55309824-55309843 Msa0459010:CDS 25.0%
! AGCTAAACGAAAATATTACA+GGG - chr3_3:55309825-55309844 Msa0459010:CDS 25.0%
! TGAGGATATATAGAATATAG+AGG + chr3_3:55310048-55310067 None:intergenic 25.0%
!! TAAATTATGGTGGTATTTTG+AGG + chr3_3:55310066-55310085 None:intergenic 25.0%
! AATCCTAATGCAGAAAATTA+TGG - chr3_3:55310153-55310172 Msa0459010:CDS 25.0%
! CAAGTAATTAACAGAAGAAA+GGG + chr3_3:55310211-55310230 None:intergenic 25.0%
!!! ACCATTGTTGTTAAGTTTTA+AGG + chr3_3:55310700-55310719 None:intergenic 25.0%
! CTTTACCTAATGGTTATTAT+GGG - chr3_3:55310775-55310794 Msa0459010:intron 25.0%
! AGCTTAATAATTTCATAGAG+TGG + chr3_3:55310855-55310874 None:intergenic 25.0%
!!! AAACATTTAGGTTTTCTTGA+TGG - chr3_3:55311005-55311024 Msa0459010:intron 25.0%
! TCATTGTCAAATTTATTAGG+AGG + chr3_3:55311119-55311138 None:intergenic 25.0%
! ACATCATAATTGAAACACTA+AGG + chr3_3:55311275-55311294 None:intergenic 25.0%
!! GTGTCAAGAGAAATAATTTT+AGG - chr3_3:55311348-55311367 Msa0459010:five_prime_UTR 25.0%
!! ATCTTTGATTTCAAGCTTTA+GGG + chr3_3:55309286-55309305 None:intergenic 25.0%
!!! AATCATGAATTGTTGATGAT+CGG + chr3_3:55309417-55309436 None:intergenic 25.0%
! AACAATTCATGATTCTGATT+CGG - chr3_3:55309423-55309442 Msa0459010:three_prime_UTR 25.0%
!! TTTTATTATTATCCACTTGC+AGG - chr3_3:55309493-55309512 Msa0459010:CDS 25.0%
!!! GTGCTGATAGAAAATTTTAA+AGG + chr3_3:55309759-55309778 None:intergenic 25.0%
!! ATGCTAGAGAAAATTTTACA+AGG + chr3_3:55309789-55309808 None:intergenic 25.0%
! AAGCTAAACGAAAATATTAC+AGG - chr3_3:55309824-55309843 Msa0459010:CDS 25.0%
! AGCTAAACGAAAATATTACA+GGG - chr3_3:55309825-55309844 Msa0459010:CDS 25.0%
! TGAGGATATATAGAATATAG+AGG + chr3_3:55310048-55310067 None:intergenic 25.0%
!! TAAATTATGGTGGTATTTTG+AGG + chr3_3:55310066-55310085 None:intergenic 25.0%
! AATCCTAATGCAGAAAATTA+TGG - chr3_3:55310153-55310172 Msa0459010:CDS 25.0%
! CAAGTAATTAACAGAAGAAA+GGG + chr3_3:55310211-55310230 None:intergenic 25.0%
!!! ACCATTGTTGTTAAGTTTTA+AGG + chr3_3:55310700-55310719 None:intergenic 25.0%
! CTTTACCTAATGGTTATTAT+GGG - chr3_3:55310775-55310794 Msa0459010:intron 25.0%
! AGCTTAATAATTTCATAGAG+TGG + chr3_3:55310855-55310874 None:intergenic 25.0%
!!! AAACATTTAGGTTTTCTTGA+TGG - chr3_3:55311005-55311024 Msa0459010:intron 25.0%
! TCATTGTCAAATTTATTAGG+AGG + chr3_3:55311119-55311138 None:intergenic 25.0%
! ACATCATAATTGAAACACTA+AGG + chr3_3:55311275-55311294 None:intergenic 25.0%
!! GTGTCAAGAGAAATAATTTT+AGG - chr3_3:55311348-55311367 Msa0459010:five_prime_UTR 25.0%
TGTTTATAAGAAATGTGGCA+AGG + chr3_3:55309238-55309257 None:intergenic 30.0%
! CATCTTTGATTTCAAGCTTT+AGG + chr3_3:55309287-55309306 None:intergenic 30.0%
!! CAAGAAGGAATTGATTTTGA+TGG + chr3_3:55309324-55309343 None:intergenic 30.0%
GAAAGAGAAAGAATACAAGA+AGG + chr3_3:55309339-55309358 None:intergenic 30.0%
ACAATTCATGATTCTGATTC+GGG - chr3_3:55309424-55309443 Msa0459010:three_prime_UTR 30.0%
AAAAATAGTATACCTGCAAG+TGG + chr3_3:55309508-55309527 None:intergenic 30.0%
! TCCTGGGTTAGATATATTAT+TGG - chr3_3:55309642-55309661 Msa0459010:CDS 30.0%
ACCAATAATATATCTAACCC+AGG + chr3_3:55309646-55309665 None:intergenic 30.0%
TAGCGATATGTAAATTATGG+TGG + chr3_3:55310076-55310095 None:intergenic 30.0%
ACGTAGCGATATGTAAATTA+TGG + chr3_3:55310079-55310098 None:intergenic 30.0%
! ACACCATAATTTTCTGCATT+AGG + chr3_3:55310159-55310178 None:intergenic 30.0%
AAATTATGGTGTTCCATTCT+TGG - chr3_3:55310167-55310186 Msa0459010:CDS 30.0%
CCAAGTAATTAACAGAAGAA+AGG + chr3_3:55310212-55310231 None:intergenic 30.0%
CCTTTCTTCTGTTAATTACT+TGG - chr3_3:55310209-55310228 Msa0459010:CDS 30.0%
! ACAACTTTTGAATCAATTGC+AGG - chr3_3:55310648-55310667 Msa0459010:intron 30.0%
GCCTTAAAACTTAACAACAA+TGG - chr3_3:55310696-55310715 Msa0459010:intron 30.0%
!! GATTTTGATCCTTTACCTAA+TGG - chr3_3:55310765-55310784 Msa0459010:intron 30.0%
CCATAATAACCATTAGGTAA+AGG + chr3_3:55310777-55310796 None:intergenic 30.0%
CCTTTACCTAATGGTTATTA+TGG - chr3_3:55310774-55310793 Msa0459010:intron 30.0%
GAATTCCCATAATAACCATT+AGG + chr3_3:55310783-55310802 None:intergenic 30.0%
TTATTATGGGAATTCATGTG+TGG - chr3_3:55310788-55310807 Msa0459010:intron 30.0%
! ATTTTTGACAAAATCAGTGG+TGG + chr3_3:55310904-55310923 None:intergenic 30.0%
! CGAATTTTTGACAAAATCAG+TGG + chr3_3:55310907-55310926 None:intergenic 30.0%
TGTAAAAATGCTCATTTCCA+TGG + chr3_3:55311096-55311115 None:intergenic 30.0%
AATGATGATCCATCAATGAA+AGG - chr3_3:55311134-55311153 Msa0459010:intron 30.0%
GTATGAAGAAGATGATGTAT+TGG + chr3_3:55311455-55311474 None:intergenic 30.0%
TGTTTATAAGAAATGTGGCA+AGG + chr3_3:55309238-55309257 None:intergenic 30.0%
! CATCTTTGATTTCAAGCTTT+AGG + chr3_3:55309287-55309306 None:intergenic 30.0%
!! CAAGAAGGAATTGATTTTGA+TGG + chr3_3:55309324-55309343 None:intergenic 30.0%
GAAAGAGAAAGAATACAAGA+AGG + chr3_3:55309339-55309358 None:intergenic 30.0%
ACAATTCATGATTCTGATTC+GGG - chr3_3:55309424-55309443 Msa0459010:three_prime_UTR 30.0%
AAAAATAGTATACCTGCAAG+TGG + chr3_3:55309508-55309527 None:intergenic 30.0%
! TCCTGGGTTAGATATATTAT+TGG - chr3_3:55309642-55309661 Msa0459010:CDS 30.0%
ACCAATAATATATCTAACCC+AGG + chr3_3:55309646-55309665 None:intergenic 30.0%
TAGCGATATGTAAATTATGG+TGG + chr3_3:55310076-55310095 None:intergenic 30.0%
ACGTAGCGATATGTAAATTA+TGG + chr3_3:55310079-55310098 None:intergenic 30.0%
! ACACCATAATTTTCTGCATT+AGG + chr3_3:55310159-55310178 None:intergenic 30.0%
AAATTATGGTGTTCCATTCT+TGG - chr3_3:55310167-55310186 Msa0459010:CDS 30.0%
CCAAGTAATTAACAGAAGAA+AGG + chr3_3:55310212-55310231 None:intergenic 30.0%
CCTTTCTTCTGTTAATTACT+TGG - chr3_3:55310209-55310228 Msa0459010:CDS 30.0%
! ACAACTTTTGAATCAATTGC+AGG - chr3_3:55310648-55310667 Msa0459010:intron 30.0%
GCCTTAAAACTTAACAACAA+TGG - chr3_3:55310696-55310715 Msa0459010:intron 30.0%
!! GATTTTGATCCTTTACCTAA+TGG - chr3_3:55310765-55310784 Msa0459010:intron 30.0%
CCATAATAACCATTAGGTAA+AGG + chr3_3:55310777-55310796 None:intergenic 30.0%
CCTTTACCTAATGGTTATTA+TGG - chr3_3:55310774-55310793 Msa0459010:intron 30.0%
GAATTCCCATAATAACCATT+AGG + chr3_3:55310783-55310802 None:intergenic 30.0%
TTATTATGGGAATTCATGTG+TGG - chr3_3:55310788-55310807 Msa0459010:intron 30.0%
! ATTTTTGACAAAATCAGTGG+TGG + chr3_3:55310904-55310923 None:intergenic 30.0%
! CGAATTTTTGACAAAATCAG+TGG + chr3_3:55310907-55310926 None:intergenic 30.0%
TGTAAAAATGCTCATTTCCA+TGG + chr3_3:55311096-55311115 None:intergenic 30.0%
AATGATGATCCATCAATGAA+AGG - chr3_3:55311134-55311153 Msa0459010:intron 30.0%
GTATGAAGAAGATGATGTAT+TGG + chr3_3:55311455-55311474 None:intergenic 30.0%
TACATGAACAGTTTGAGCAA+AGG + chr3_3:55309392-55309411 None:intergenic 35.0%
!! AGGCTTACACCCTATTTTAA+AGG + chr3_3:55309594-55309613 None:intergenic 35.0%
TTAGCAATTGCTTCCAAGAA+TGG + chr3_3:55310183-55310202 None:intergenic 35.0%
ATGCTTTGCAATTTCTGTGT+CGG + chr3_3:55310241-55310260 None:intergenic 35.0%
! CACAGAAATTGCAAAGCATT+TGG - chr3_3:55310242-55310261 Msa0459010:CDS 35.0%
TGAAGACAAAACTTACCCTT+TGG - chr3_3:55310275-55310294 Msa0459010:CDS 35.0%
AAGGTGACAAAATTTCGTTG+CGG - chr3_3:55310303-55310322 Msa0459010:CDS 35.0%
TTGTAGTGTTGTCTTGATTC+AGG + chr3_3:55310539-55310558 None:intergenic 35.0%
!! GCTTAAGTTGAGTTTGATGA+AGG - chr3_3:55310605-55310624 Msa0459010:exon 35.0%
TTGAGTTTGATGAAGGAAAG+TGG - chr3_3:55310612-55310631 Msa0459010:intron 35.0%
AATCAATTGCAGGTTATGTG+TGG - chr3_3:55310658-55310677 Msa0459010:intron 35.0%
AAGTTAGTGAGCTTGATGAA+AGG - chr3_3:55310829-55310848 Msa0459010:intron 35.0%
CAAAAATTCGATCAACACGT+TGG - chr3_3:55310917-55310936 Msa0459010:intron 35.0%
GTTGGAGACGAATTATAATG+AGG - chr3_3:55310935-55310954 Msa0459010:intron 35.0%
CGAATTATAATGAGGAATCC+AGG - chr3_3:55310943-55310962 Msa0459010:intron 35.0%
! CTTGATGGAGATGTAGATTT+TGG - chr3_3:55311020-55311039 Msa0459010:intron 35.0%
!! ATGGAGATGTAGATTTTGGT+GGG - chr3_3:55311024-55311043 Msa0459010:intron 35.0%
ATGGATGCAAATAAGTTGCA+TGG + chr3_3:55311077-55311096 None:intergenic 35.0%
ATGCAACTTATTTGCATCCA+TGG - chr3_3:55311076-55311095 Msa0459010:intron 35.0%
ATGATCCATCAATGAAAGGA+GGG - chr3_3:55311138-55311157 Msa0459010:intron 35.0%
TCAATTTCCTCCTTGAACTT+GGG + chr3_3:55311200-55311219 None:intergenic 35.0%
TTCAATTTCCTCCTTGAACT+TGG + chr3_3:55311201-55311220 None:intergenic 35.0%
! TAGTAGTGAAGTGCTTGTAA+TGG - chr3_3:55311397-55311416 Msa0459010:five_prime_UTR 35.0%
TACATGAACAGTTTGAGCAA+AGG + chr3_3:55309392-55309411 None:intergenic 35.0%
!! AGGCTTACACCCTATTTTAA+AGG + chr3_3:55309594-55309613 None:intergenic 35.0%
TTAGCAATTGCTTCCAAGAA+TGG + chr3_3:55310183-55310202 None:intergenic 35.0%
ATGCTTTGCAATTTCTGTGT+CGG + chr3_3:55310241-55310260 None:intergenic 35.0%
! CACAGAAATTGCAAAGCATT+TGG - chr3_3:55310242-55310261 Msa0459010:CDS 35.0%
TGAAGACAAAACTTACCCTT+TGG - chr3_3:55310275-55310294 Msa0459010:CDS 35.0%
AAGGTGACAAAATTTCGTTG+CGG - chr3_3:55310303-55310322 Msa0459010:CDS 35.0%
TTGTAGTGTTGTCTTGATTC+AGG + chr3_3:55310539-55310558 None:intergenic 35.0%
!! GCTTAAGTTGAGTTTGATGA+AGG - chr3_3:55310605-55310624 Msa0459010:exon 35.0%
TTGAGTTTGATGAAGGAAAG+TGG - chr3_3:55310612-55310631 Msa0459010:intron 35.0%
AATCAATTGCAGGTTATGTG+TGG - chr3_3:55310658-55310677 Msa0459010:intron 35.0%
AAGTTAGTGAGCTTGATGAA+AGG - chr3_3:55310829-55310848 Msa0459010:intron 35.0%
CAAAAATTCGATCAACACGT+TGG - chr3_3:55310917-55310936 Msa0459010:intron 35.0%
GTTGGAGACGAATTATAATG+AGG - chr3_3:55310935-55310954 Msa0459010:intron 35.0%
CGAATTATAATGAGGAATCC+AGG - chr3_3:55310943-55310962 Msa0459010:intron 35.0%
! CTTGATGGAGATGTAGATTT+TGG - chr3_3:55311020-55311039 Msa0459010:intron 35.0%
!! ATGGAGATGTAGATTTTGGT+GGG - chr3_3:55311024-55311043 Msa0459010:intron 35.0%
ATGGATGCAAATAAGTTGCA+TGG + chr3_3:55311077-55311096 None:intergenic 35.0%
ATGCAACTTATTTGCATCCA+TGG - chr3_3:55311076-55311095 Msa0459010:intron 35.0%
ATGATCCATCAATGAAAGGA+GGG - chr3_3:55311138-55311157 Msa0459010:intron 35.0%
TCAATTTCCTCCTTGAACTT+GGG + chr3_3:55311200-55311219 None:intergenic 35.0%
TTCAATTTCCTCCTTGAACT+TGG + chr3_3:55311201-55311220 None:intergenic 35.0%
! TAGTAGTGAAGTGCTTGTAA+TGG - chr3_3:55311397-55311416 Msa0459010:five_prime_UTR 35.0%
!! ATTCCAAGAAGCGCTTTCAA+AGG - chr3_3:55309465-55309484 Msa0459010:three_prime_UTR 40.0%
ATGGTGAAACATGCTGATGA+TGG - chr3_3:55310111-55310130 Msa0459010:CDS 40.0%
!! AACTTACCCTTTGGTGTTCA+AGG - chr3_3:55310284-55310303 Msa0459010:CDS 40.0%
TTGTCACCTTGAACACCAAA+GGG + chr3_3:55310293-55310312 None:intergenic 40.0%
TTTGTCACCTTGAACACCAA+AGG + chr3_3:55310294-55310313 None:intergenic 40.0%
AAGCCATTATCGAACTTGCA+AGG - chr3_3:55310394-55310413 Msa0459010:CDS 40.0%
AGCCATTATCGAACTTGCAA+GGG - chr3_3:55310395-55310414 Msa0459010:CDS 40.0%
TGGGAAAGAGAGAGACTTAT+TGG - chr3_3:55310447-55310466 Msa0459010:CDS 40.0%
! TTCATAGGGCATTCTGGAAA+TGG + chr3_3:55310489-55310508 None:intergenic 40.0%
! CAACGGATTCCTTGTTCATA+GGG + chr3_3:55310503-55310522 None:intergenic 40.0%
CAGGTAAGGTGAAAATGCAA+CGG + chr3_3:55310520-55310539 None:intergenic 40.0%
GTGTTGTCTTGATTCAGGTA+AGG + chr3_3:55310534-55310553 None:intergenic 40.0%
TGGAGGGTGAAATGATAACA+AGG - chr3_3:55310583-55310602 Msa0459010:CDS 40.0%
TGGTATTAGACGCAACTTGA+AGG - chr3_3:55310743-55310762 Msa0459010:intron 40.0%
CTGACAGAGTGGAAACATTT+AGG - chr3_3:55310993-55311012 Msa0459010:intron 40.0%
! GATGGAGATGTAGATTTTGG+TGG - chr3_3:55311023-55311042 Msa0459010:intron 40.0%
GATGATCCATCAATGAAAGG+AGG - chr3_3:55311137-55311156 Msa0459010:intron 40.0%
TGATCCATCAATGAAAGGAG+GGG - chr3_3:55311139-55311158 Msa0459010:intron 40.0%
TTAACCCCTCCTTTCATTGA+TGG + chr3_3:55311146-55311165 None:intergenic 40.0%
AAGGCAACTTCAACTGATCT+TGG + chr3_3:55311256-55311275 None:intergenic 40.0%
!! ATTCCAAGAAGCGCTTTCAA+AGG - chr3_3:55309465-55309484 Msa0459010:three_prime_UTR 40.0%
ATGGTGAAACATGCTGATGA+TGG - chr3_3:55310111-55310130 Msa0459010:CDS 40.0%
!! AACTTACCCTTTGGTGTTCA+AGG - chr3_3:55310284-55310303 Msa0459010:CDS 40.0%
TTGTCACCTTGAACACCAAA+GGG + chr3_3:55310293-55310312 None:intergenic 40.0%
TTTGTCACCTTGAACACCAA+AGG + chr3_3:55310294-55310313 None:intergenic 40.0%
AAGCCATTATCGAACTTGCA+AGG - chr3_3:55310394-55310413 Msa0459010:CDS 40.0%
AGCCATTATCGAACTTGCAA+GGG - chr3_3:55310395-55310414 Msa0459010:CDS 40.0%
TGGGAAAGAGAGAGACTTAT+TGG - chr3_3:55310447-55310466 Msa0459010:CDS 40.0%
! TTCATAGGGCATTCTGGAAA+TGG + chr3_3:55310489-55310508 None:intergenic 40.0%
! CAACGGATTCCTTGTTCATA+GGG + chr3_3:55310503-55310522 None:intergenic 40.0%
CAGGTAAGGTGAAAATGCAA+CGG + chr3_3:55310520-55310539 None:intergenic 40.0%
GTGTTGTCTTGATTCAGGTA+AGG + chr3_3:55310534-55310553 None:intergenic 40.0%
TGGAGGGTGAAATGATAACA+AGG - chr3_3:55310583-55310602 Msa0459010:CDS 40.0%
TGGTATTAGACGCAACTTGA+AGG - chr3_3:55310743-55310762 Msa0459010:intron 40.0%
CTGACAGAGTGGAAACATTT+AGG - chr3_3:55310993-55311012 Msa0459010:intron 40.0%
! GATGGAGATGTAGATTTTGG+TGG - chr3_3:55311023-55311042 Msa0459010:intron 40.0%
GATGATCCATCAATGAAAGG+AGG - chr3_3:55311137-55311156 Msa0459010:intron 40.0%
TGATCCATCAATGAAAGGAG+GGG - chr3_3:55311139-55311158 Msa0459010:intron 40.0%
TTAACCCCTCCTTTCATTGA+TGG + chr3_3:55311146-55311165 None:intergenic 40.0%
AAGGCAACTTCAACTGATCT+TGG + chr3_3:55311256-55311275 None:intergenic 40.0%
CTTGGAATACATGACAAGCG+TGG + chr3_3:55309453-55309472 None:intergenic 45.0%
!! AAGCCTTTGAAAGCGCTTCT+TGG + chr3_3:55309471-55309490 None:intergenic 45.0%
TACATATCGCTACGTCTTGC+AGG - chr3_3:55310084-55310103 Msa0459010:CDS 45.0%
GTGACAAAATTTCGTTGCGG+AGG - chr3_3:55310306-55310325 Msa0459010:CDS 45.0%
GGAGGTTTCACAATCGGAAT+GGG - chr3_3:55310324-55310343 Msa0459010:CDS 45.0%
GAGGTTTCACAATCGGAATG+GGG - chr3_3:55310325-55310344 Msa0459010:CDS 45.0%
AGGTTTCACAATCGGAATGG+GGG - chr3_3:55310326-55310345 Msa0459010:CDS 45.0%
GCCATTATCGAACTTGCAAG+GGG - chr3_3:55310396-55310415 Msa0459010:CDS 45.0%
TCCCCTTGCAAGTTCGATAA+TGG + chr3_3:55310400-55310419 None:intergenic 45.0%
TCCAGAATGCCCTATGAACA+AGG - chr3_3:55310491-55310510 Msa0459010:CDS 45.0%
! TCCTTGTTCATAGGGCATTC+TGG + chr3_3:55310495-55310514 None:intergenic 45.0%
! GCAACGGATTCCTTGTTCAT+AGG + chr3_3:55310504-55310523 None:intergenic 45.0%
CAATTGCAGGTTATGTGTGG+AGG - chr3_3:55310661-55310680 Msa0459010:intron 45.0%
GCGTCTAATACCAGCTACAA+TGG + chr3_3:55310736-55310755 None:intergenic 45.0%
GAATCCAGGATGCTAAGTAC+CGG - chr3_3:55310957-55310976 Msa0459010:intron 45.0%
GCAAATAAGTTGCATGGTGC+TGG + chr3_3:55311071-55311090 None:intergenic 45.0%
CTTGGAATACATGACAAGCG+TGG + chr3_3:55309453-55309472 None:intergenic 45.0%
!! AAGCCTTTGAAAGCGCTTCT+TGG + chr3_3:55309471-55309490 None:intergenic 45.0%
TACATATCGCTACGTCTTGC+AGG - chr3_3:55310084-55310103 Msa0459010:CDS 45.0%
GTGACAAAATTTCGTTGCGG+AGG - chr3_3:55310306-55310325 Msa0459010:CDS 45.0%
GGAGGTTTCACAATCGGAAT+GGG - chr3_3:55310324-55310343 Msa0459010:CDS 45.0%
GAGGTTTCACAATCGGAATG+GGG - chr3_3:55310325-55310344 Msa0459010:CDS 45.0%
AGGTTTCACAATCGGAATGG+GGG - chr3_3:55310326-55310345 Msa0459010:CDS 45.0%
GCCATTATCGAACTTGCAAG+GGG - chr3_3:55310396-55310415 Msa0459010:CDS 45.0%
TCCCCTTGCAAGTTCGATAA+TGG + chr3_3:55310400-55310419 None:intergenic 45.0%
TCCAGAATGCCCTATGAACA+AGG - chr3_3:55310491-55310510 Msa0459010:CDS 45.0%
! TCCTTGTTCATAGGGCATTC+TGG + chr3_3:55310495-55310514 None:intergenic 45.0%
! GCAACGGATTCCTTGTTCAT+AGG + chr3_3:55310504-55310523 None:intergenic 45.0%
CAATTGCAGGTTATGTGTGG+AGG - chr3_3:55310661-55310680 Msa0459010:intron 45.0%
GCGTCTAATACCAGCTACAA+TGG + chr3_3:55310736-55310755 None:intergenic 45.0%
GAATCCAGGATGCTAAGTAC+CGG - chr3_3:55310957-55310976 Msa0459010:intron 45.0%
GCAAATAAGTTGCATGGTGC+TGG + chr3_3:55311071-55311090 None:intergenic 45.0%
!! AAAATTTATAAAAAATGATA+AGG + chr3_3:55309614-55309633 None:intergenic 5.0%
!!! TTTTTTTTTTTGTAAAATAA+TGG + chr3_3:55309965-55309984 None:intergenic 5.0%
!! AAAATTTATAAAAAATGATA+AGG + chr3_3:55309614-55309633 None:intergenic 5.0%
!!! TTTTTTTTTTTGTAAAATAA+TGG + chr3_3:55309965-55309984 None:intergenic 5.0%
GCTACGTCTTGCAGGTAGAA+TGG - chr3_3:55310092-55310111 Msa0459010:CDS 50.0%
CGTTGCGGAGGTTTCACAAT+CGG - chr3_3:55310318-55310337 Msa0459010:CDS 50.0%
CGGAGGTTTCACAATCGGAA+TGG - chr3_3:55310323-55310342 Msa0459010:CDS 50.0%
GTGTTGCACGCTATCTGTGA+CGG - chr3_3:55310348-55310367 Msa0459010:CDS 50.0%
AGTCTCTCTCTTTCCCACAC+AGG + chr3_3:55310444-55310463 None:intergenic 50.0%
!! ACAGTGCTGACCATTGTAGC+TGG - chr3_3:55310723-55310742 Msa0459010:intron 50.0%
!! GCTAAGTACCGGTGCAGTAA+CGG - chr3_3:55310968-55310987 Msa0459010:intron 50.0%
TGTCAGAACCGTTACTGCAC+CGG + chr3_3:55310979-55310998 None:intergenic 50.0%
! CAGTAACGGTTCTGACAGAG+TGG - chr3_3:55310982-55311001 Msa0459010:intron 50.0%
TTCCTCCTTGAACTTGGGCA+TGG + chr3_3:55311195-55311214 None:intergenic 50.0%
GCTACGTCTTGCAGGTAGAA+TGG - chr3_3:55310092-55310111 Msa0459010:CDS 50.0%
CGTTGCGGAGGTTTCACAAT+CGG - chr3_3:55310318-55310337 Msa0459010:CDS 50.0%
CGGAGGTTTCACAATCGGAA+TGG - chr3_3:55310323-55310342 Msa0459010:CDS 50.0%
GTGTTGCACGCTATCTGTGA+CGG - chr3_3:55310348-55310367 Msa0459010:CDS 50.0%
AGTCTCTCTCTTTCCCACAC+AGG + chr3_3:55310444-55310463 None:intergenic 50.0%
!! ACAGTGCTGACCATTGTAGC+TGG - chr3_3:55310723-55310742 Msa0459010:intron 50.0%
!! GCTAAGTACCGGTGCAGTAA+CGG - chr3_3:55310968-55310987 Msa0459010:intron 50.0%
TGTCAGAACCGTTACTGCAC+CGG + chr3_3:55310979-55310998 None:intergenic 50.0%
! CAGTAACGGTTCTGACAGAG+TGG - chr3_3:55310982-55311001 Msa0459010:intron 50.0%
TTCCTCCTTGAACTTGGGCA+TGG + chr3_3:55311195-55311214 None:intergenic 50.0%
! CACGCTATCTGTGACGGAGT+TGG - chr3_3:55310354-55310373 Msa0459010:CDS 55.0%
AACCCTCGACGATACCTGTG+TGG - chr3_3:55310427-55310446 Msa0459010:CDS 55.0%
ACCCTCGACGATACCTGTGT+GGG - chr3_3:55310428-55310447 Msa0459010:CDS 55.0%
! TCCCACACAGGTATCGTCGA+GGG + chr3_3:55310432-55310451 None:intergenic 55.0%
! TTCCCACACAGGTATCGTCG+AGG + chr3_3:55310433-55310452 None:intergenic 55.0%
! TGCACCGGTACTTAGCATCC+TGG + chr3_3:55310964-55310983 None:intergenic 55.0%
ACTTGGGCATGGCAGCAACA+GGG + chr3_3:55311184-55311203 None:intergenic 55.0%
AACTTGGGCATGGCAGCAAC+AGG + chr3_3:55311185-55311204 None:intergenic 55.0%
TGCTGCCATGCCCAAGTTCA+AGG - chr3_3:55311187-55311206 Msa0459010:intron 55.0%
TGCCATGCCCAAGTTCAAGG+AGG - chr3_3:55311190-55311209 Msa0459010:intron 55.0%
! CACGCTATCTGTGACGGAGT+TGG - chr3_3:55310354-55310373 Msa0459010:CDS 55.0%
AACCCTCGACGATACCTGTG+TGG - chr3_3:55310427-55310446 Msa0459010:CDS 55.0%
ACCCTCGACGATACCTGTGT+GGG - chr3_3:55310428-55310447 Msa0459010:CDS 55.0%
! TCCCACACAGGTATCGTCGA+GGG + chr3_3:55310432-55310451 None:intergenic 55.0%
! TTCCCACACAGGTATCGTCG+AGG + chr3_3:55310433-55310452 None:intergenic 55.0%
! TGCACCGGTACTTAGCATCC+TGG + chr3_3:55310964-55310983 None:intergenic 55.0%
ACTTGGGCATGGCAGCAACA+GGG + chr3_3:55311184-55311203 None:intergenic 55.0%
AACTTGGGCATGGCAGCAAC+AGG + chr3_3:55311185-55311204 None:intergenic 55.0%
TGCTGCCATGCCCAAGTTCA+AGG - chr3_3:55311187-55311206 Msa0459010:intron 55.0%
TGCCATGCCCAAGTTCAAGG+AGG - chr3_3:55311190-55311209 Msa0459010:intron 55.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 55309210 55311520 55309210 ID=Msa0459010;Name=Msa0459010
chr3_3 mRNA 55309210 55311520 55309210 ID=Msa0459010-mRNA-1;Parent=Msa0459010;Name=Msa0459010-mRNA-1;_AED=0.03;_eAED=0.03;_QI=310|1|1|1|0|0.5|2|279|376
chr3_3 exon 55309210 55310624 55309210 ID=Msa0459010-mRNA-1:exon:10959;Parent=Msa0459010-mRNA-1
chr3_3 exon 55311216 55311520 55311216 ID=Msa0459010-mRNA-1:exon:10958;Parent=Msa0459010-mRNA-1
chr3_3 five_prime_UTR 55311216 55311520 55311216 ID=Msa0459010-mRNA-1:five_prime_utr;Parent=Msa0459010-mRNA-1
chr3_3 five_prime_UTR 55310620 55310624 55310620 ID=Msa0459010-mRNA-1:five_prime_utr;Parent=Msa0459010-mRNA-1
chr3_3 CDS 55309489 55310619 55309489 ID=Msa0459010-mRNA-1:cds;Parent=Msa0459010-mRNA-1
chr3_3 three_prime_UTR 55309210 55309488 55309210 ID=Msa0459010-mRNA-1:three_prime_utr;Parent=Msa0459010-mRNA-1
Gene Sequence

>Msa0459010

ATGGTGAAACATGCTGATGATGGAAAACTAAGAGTCAATTGCAATCCTAATGCAGAAAATTATGGTGTTCCATTCTTGGAAGCAATTGCTAACTGCACCCTTTCTTCTGTTAATTACTTGGACAATACCGACACAGAAATTGCAAAGCATTTGGTGCTTGATCTTGAAGACAAAACTTACCCTTTGGTGTTCAAGGTGACAAAATTTCGTTGCGGAGGTTTCACAATCGGAATGGGGGTGTTGCACGCTATCTGTGACGGAGTTGGTGCATCTCAATTCTTCAAAGCCATTATCGAACTTGCAAGGGGAAGAAATGAACCCTCGACGATACCTGTGTGGGAAAGAGAGAGACTTATTGGATCAATAACTAAACAGCCATTTCCAGAATGCCCTATGAACAAGGAATCCGTTGCATTTTCACCTTACCTGAATCAAGACAACACTACAATTATGAAGAAATATTGTTTTAATATGGAGGGTGAAATGATAACAAGGCTTAAGTTGAGTTTGATGAAGGAAAGTGGAAATATAAAGTTCACAACTTTTGAATCAATTGCAGGTTATGTGTGGAGGTCAAGAGCAAGAGCCTTAAAACTTAACAACAATGGTGAAACAGTGCTGACCATTGTAGCTGGTATTAGACGCAACTTGAAGGATTTTGATCCTTTACCTAATGGTTATTATGGGAATTCATGTGTGGATGCAAACACTGTGTTAAAAGTTAGTGAGCTTGATGAAAGGCCACTCTATGAAATTATTAAGCTCATCAGAGAGACTAAAAACATTGCTTCCACCACTGATTTTGTCAAAAATTCGATCAACACGTTGGAGACGAATTATAATGAGGAATCCAGGATGCTAAGTACCGGTGCAGTAACGGTTCTGACAGAGTGGAAACATTTAGGTTTTCTTGATGGAGATGTAGATTTTGGTGGGCATGAAGCAGTGAATTTAGTACCAGCACCATGCAACTTATTTGCATCCATGGAAATGAGCATTTTTACACCTCCTAATAAATTTGACAATGATGATCCATCAATGAAAGGAGGGGTTAAGATTTTTACTACACGCCCTGTTGCTGCCATGCCCAAGTTCAAGGAGGAAATTGAAGCTTTAAGATTTCTTAGTTAA
Protein sequence

>Msa0459010

MVKHADDGKLRVNCNPNAENYGVPFLEAIANCTLSSVNYLDNTDTEIAKHLVLDLEDKTYPLVFKVTKFRCGGFTIGMGVLHAICDGVGASQFFKAIIELARGRNEPSTIPVWERERLIGSITKQPFPECPMNKESVAFSPYLNQDNTTIMKKYCFNMEGEMITRLKLSLMKESGNIKFTTFESIAGYVWRSRARALKLNNNGETVLTIVAGIRRNLKDFDPLPNGYYGNSCVDANTVLKVSELDERPLYEIIKLIRETKNIASTTDFVKNSINTLETNYNEESRMLSTGAVTVLTEWKHLGFLDGDVDFGGHEAVNLVPAPCNLFASMEMSIFTPPNKFDNDDPSMKGGVKIFTTRPVAAMPKFKEEIEALRFLS*