Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459030 | XP_013460373.1 | 93.275 | 461 | 31 | 0 | 1 | 461 | 1 | 461 | 0.0 | 895 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459030 | sp|O80467|SDT_ARATH | 37.916 | 451 | 250 | 15 | 17 | 457 | 20 | 450 | 1.90e-88 | 280 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459030 | A0A072UYC5 | 93.275 | 461 | 31 | 0 | 1 | 461 | 1 | 461 | 0.0 | 895 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0366080 | Msa0459030 | 0.807300 | 5.407143e-50 | -8.615850e-47 |
| Msa0413960 | Msa0459030 | 0.831102 | 2.019476e-55 | -8.615850e-47 |
| Msa0459010 | Msa0459030 | 0.858225 | 9.531677e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459030 | MtrunA17_Chr3g0106761 | 88.452 | 407 | 47 | 0 | 55 | 461 | 1 | 407 | 0.0 | 751 |
| Msa0459030 | MtrunA17_Chr3g0106741 | 94.211 | 380 | 22 | 0 | 82 | 461 | 59 | 438 | 0.0 | 747 |
| Msa0459030 | MtrunA17_Chr3g0106691 | 69.032 | 465 | 135 | 5 | 1 | 460 | 47 | 507 | 0.0 | 670 |
| Msa0459030 | MtrunA17_Chr3g0106661 | 67.234 | 470 | 143 | 6 | 1 | 461 | 1 | 468 | 0.0 | 643 |
| Msa0459030 | MtrunA17_Chr3g0106721 | 67.857 | 448 | 132 | 3 | 1 | 445 | 1 | 439 | 0.0 | 619 |
| Msa0459030 | MtrunA17_Chr6g0470591 | 56.774 | 465 | 183 | 10 | 4 | 457 | 5 | 462 | 1.72e-179 | 510 |
| Msa0459030 | MtrunA17_Chr4g0027071 | 51.173 | 469 | 201 | 12 | 4 | 460 | 6 | 458 | 3.99e-155 | 448 |
| Msa0459030 | MtrunA17_Chr3g0106711 | 70.690 | 232 | 63 | 3 | 1 | 228 | 1 | 231 | 2.31e-119 | 348 |
| Msa0459030 | MtrunA17_Chr3g0106701 | 66.860 | 172 | 54 | 2 | 291 | 460 | 1 | 171 | 2.47e-76 | 236 |
| Msa0459030 | MtrunA17_Chr3g0106631 | 69.595 | 148 | 45 | 0 | 151 | 298 | 2 | 149 | 1.63e-73 | 228 |
| Msa0459030 | MtrunA17_Chr2g0283361 | 32.018 | 456 | 278 | 15 | 10 | 455 | 2 | 435 | 1.28e-66 | 220 |
| Msa0459030 | MtrunA17_Chr3g0106771 | 87.356 | 87 | 11 | 0 | 1 | 87 | 1 | 87 | 3.39e-47 | 158 |
| Msa0459030 | MtrunA17_Chr3g0106751 | 83.908 | 87 | 14 | 0 | 1 | 87 | 1 | 87 | 1.20e-44 | 151 |
| Msa0459030 | MtrunA17_Chr7g0270771 | 35.211 | 284 | 154 | 10 | 17 | 296 | 12 | 269 | 2.31e-43 | 154 |
| Msa0459030 | MtrunA17_Chr8g0386141 | 28.112 | 466 | 274 | 19 | 8 | 455 | 5 | 427 | 9.21e-42 | 154 |
| Msa0459030 | MtrunA17_Chr3g0106621 | 57.812 | 128 | 45 | 2 | 333 | 460 | 2 | 120 | 9.39e-42 | 144 |
| Msa0459030 | MtrunA17_Chr7g0224391 | 30.750 | 400 | 232 | 18 | 17 | 401 | 23 | 392 | 7.31e-41 | 151 |
| Msa0459030 | MtrunA17_Chr3g0106641 | 78.889 | 90 | 17 | 1 | 1 | 88 | 44 | 133 | 3.34e-39 | 138 |
| Msa0459030 | MtrunA17_Chr1g0165681 | 30.270 | 370 | 225 | 11 | 4 | 361 | 3 | 351 | 4.76e-39 | 147 |
| Msa0459030 | MtrunA17_Chr3g0132001 | 28.509 | 456 | 278 | 20 | 8 | 452 | 12 | 430 | 1.02e-38 | 145 |
| Msa0459030 | MtrunA17_Chr3g0113821 | 27.679 | 448 | 269 | 17 | 10 | 427 | 5 | 427 | 5.83e-38 | 143 |
| Msa0459030 | MtrunA17_Chr1g0165671 | 27.412 | 456 | 282 | 15 | 17 | 457 | 34 | 455 | 1.53e-37 | 143 |
| Msa0459030 | MtrunA17_Chr1g0191081 | 28.035 | 453 | 284 | 15 | 17 | 457 | 25 | 447 | 2.74e-37 | 142 |
| Msa0459030 | MtrunA17_Chr1g0165661 | 28.791 | 455 | 279 | 15 | 17 | 457 | 16 | 439 | 4.22e-37 | 141 |
| Msa0459030 | MtrunA17_Chr2g0306321 | 28.788 | 462 | 274 | 22 | 18 | 454 | 26 | 457 | 2.04e-35 | 137 |
| Msa0459030 | MtrunA17_Chr5g0433641 | 26.718 | 393 | 261 | 10 | 17 | 401 | 17 | 390 | 5.12e-35 | 135 |
| Msa0459030 | MtrunA17_Chr7g0273761 | 29.873 | 395 | 247 | 14 | 17 | 401 | 389 | 763 | 1.12e-33 | 134 |
| Msa0459030 | MtrunA17_Chr7g0273761 | 26.959 | 319 | 198 | 12 | 150 | 457 | 32 | 326 | 3.07e-18 | 87.8 |
| Msa0459030 | MtrunA17_Chr3g0106651 | 72.289 | 83 | 22 | 1 | 6 | 87 | 36 | 118 | 2.19e-33 | 122 |
| Msa0459030 | MtrunA17_Chr3g0141851 | 24.519 | 416 | 259 | 11 | 18 | 412 | 20 | 401 | 2.48e-33 | 130 |
| Msa0459030 | MtrunA17_Chr8g0371821 | 28.689 | 366 | 232 | 13 | 10 | 366 | 3 | 348 | 4.64e-33 | 129 |
| Msa0459030 | MtrunA17_Chr7g0273721 | 27.919 | 394 | 256 | 12 | 17 | 401 | 18 | 392 | 1.28e-32 | 129 |
| Msa0459030 | MtrunA17_Chr7g0273781 | 28.316 | 392 | 255 | 10 | 17 | 401 | 50 | 422 | 1.92e-32 | 129 |
| Msa0459030 | MtrunA17_Chr1g0165711 | 28.161 | 348 | 213 | 10 | 4 | 339 | 3 | 325 | 3.46e-32 | 127 |
| Msa0459030 | MtrunA17_Chr4g0001861 | 26.923 | 416 | 259 | 18 | 10 | 406 | 3 | 392 | 2.43e-31 | 125 |
| Msa0459030 | MtrunA17_Chr7g0273791 | 27.990 | 393 | 255 | 11 | 17 | 401 | 17 | 389 | 3.76e-31 | 125 |
| Msa0459030 | MtrunA17_Chr2g0334001 | 25.376 | 465 | 285 | 19 | 10 | 452 | 3 | 427 | 6.47e-31 | 124 |
| Msa0459030 | MtrunA17_Chr7g0273731 | 26.058 | 449 | 299 | 12 | 17 | 457 | 100 | 523 | 2.24e-29 | 120 |
| Msa0459030 | MtrunA17_Chr3g0087401 | 26.509 | 381 | 236 | 15 | 20 | 377 | 12 | 371 | 2.56e-28 | 116 |
| Msa0459030 | MtrunA17_Chr7g0253541 | 28.199 | 422 | 257 | 20 | 18 | 409 | 12 | 417 | 2.79e-26 | 110 |
| Msa0459030 | MtrunA17_Chr7g0253501 | 26.617 | 402 | 238 | 19 | 44 | 406 | 34 | 417 | 5.69e-25 | 107 |
| Msa0459030 | MtrunA17_Chr4g0054081 | 29.592 | 294 | 172 | 13 | 68 | 343 | 65 | 341 | 7.84e-23 | 100 |
| Msa0459030 | MtrunA17_Chr7g0253531 | 27.020 | 396 | 221 | 23 | 56 | 406 | 45 | 417 | 3.26e-21 | 95.9 |
| Msa0459030 | MtrunA17_Chr4g0072041 | 27.875 | 287 | 185 | 9 | 68 | 343 | 70 | 345 | 5.76e-21 | 95.1 |
| Msa0459030 | MtrunA17_Chr6g0471971 | 31.746 | 189 | 117 | 5 | 167 | 351 | 3 | 183 | 4.99e-19 | 85.9 |
| Msa0459030 | MtrunA17_Chr7g0252731 | 28.701 | 331 | 196 | 14 | 8 | 320 | 15 | 323 | 6.14e-19 | 89.0 |
| Msa0459030 | MtrunA17_Chr2g0311401 | 24.611 | 321 | 197 | 12 | 149 | 452 | 5 | 297 | 6.21e-18 | 84.3 |
| Msa0459030 | MtrunA17_Chr3g0134071 | 28.674 | 279 | 167 | 10 | 69 | 329 | 71 | 335 | 1.81e-17 | 84.7 |
| Msa0459030 | MtrunA17_Chr3g0134041 | 26.871 | 294 | 161 | 12 | 68 | 334 | 66 | 332 | 2.81e-17 | 84.0 |
| Msa0459030 | MtrunA17_Chr8g0359251 | 26.199 | 271 | 180 | 7 | 68 | 329 | 63 | 322 | 4.88e-17 | 83.2 |
| Msa0459030 | MtrunA17_Chr4g0010331 | 27.536 | 276 | 178 | 10 | 68 | 332 | 55 | 319 | 7.22e-17 | 82.4 |
| Msa0459030 | MtrunA17_Chr3g0134121 | 26.978 | 278 | 179 | 10 | 69 | 334 | 70 | 335 | 8.94e-17 | 82.8 |
| Msa0459030 | MtrunA17_Chr3g0134091 | 27.018 | 285 | 172 | 11 | 68 | 334 | 68 | 334 | 1.09e-16 | 82.0 |
| Msa0459030 | MtrunA17_Chr3g0134111 | 26.667 | 285 | 177 | 11 | 68 | 334 | 65 | 335 | 1.20e-16 | 82.0 |
| Msa0459030 | MtrunA17_Chr3g0134061 | 27.083 | 288 | 176 | 10 | 69 | 334 | 69 | 344 | 1.62e-16 | 81.6 |
| Msa0459030 | MtrunA17_Chr5g0442721 | 25.187 | 401 | 257 | 14 | 54 | 426 | 55 | 440 | 1.66e-16 | 81.6 |
| Msa0459030 | MtrunA17_Chr4g0010351 | 28.094 | 299 | 192 | 10 | 68 | 352 | 55 | 344 | 2.10e-16 | 80.9 |
| Msa0459030 | MtrunA17_Chr4g0010361 | 28.758 | 306 | 181 | 15 | 68 | 352 | 55 | 344 | 1.01e-15 | 79.0 |
| Msa0459030 | MtrunA17_Chr4g0010381 | 26.335 | 281 | 190 | 8 | 63 | 332 | 50 | 324 | 1.50e-15 | 78.6 |
| Msa0459030 | MtrunA17_Chr7g0235531 | 23.298 | 382 | 245 | 12 | 9 | 364 | 3 | 362 | 3.87e-15 | 77.4 |
| Msa0459030 | MtrunA17_Chr3g0095731 | 25.159 | 314 | 210 | 11 | 68 | 364 | 65 | 370 | 6.99e-14 | 73.6 |
| Msa0459030 | MtrunA17_Chr3g0123061 | 23.414 | 457 | 295 | 18 | 8 | 457 | 3 | 411 | 9.11e-14 | 72.8 |
| Msa0459030 | MtrunA17_Chr8g0354371 | 25.092 | 271 | 181 | 8 | 68 | 329 | 64 | 321 | 9.13e-14 | 73.2 |
| Msa0459030 | MtrunA17_Chr3g0125001 | 26.182 | 275 | 179 | 8 | 68 | 331 | 55 | 316 | 2.23e-13 | 72.0 |
| Msa0459030 | MtrunA17_Chr3g0113181 | 25.552 | 317 | 194 | 12 | 68 | 351 | 66 | 373 | 1.01e-12 | 70.1 |
| Msa0459030 | MtrunA17_Chr5g0408911 | 23.102 | 303 | 207 | 9 | 68 | 362 | 74 | 358 | 1.69e-12 | 69.3 |
| Msa0459030 | MtrunA17_Chr5g0442691 | 25.321 | 312 | 210 | 10 | 68 | 364 | 89 | 392 | 2.19e-12 | 68.9 |
| Msa0459030 | MtrunA17_Chr3g0095721 | 24.116 | 311 | 214 | 8 | 68 | 364 | 72 | 374 | 2.56e-12 | 68.6 |
| Msa0459030 | MtrunA17_Chr7g0219291 | 23.100 | 329 | 215 | 9 | 69 | 363 | 417 | 741 | 1.11e-11 | 67.4 |
| Msa0459030 | MtrunA17_Chr5g0442701 | 24.038 | 312 | 214 | 9 | 68 | 364 | 66 | 369 | 2.39e-11 | 65.5 |
| Msa0459030 | MtrunA17_Chr4g0053081 | 24.296 | 284 | 176 | 12 | 68 | 331 | 64 | 328 | 7.32e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0459030 | AT5G07080.1 | 38.544 | 467 | 240 | 15 | 8 | 457 | 12 | 448 | 4.26e-95 | 294 |
| Msa0459030 | AT2G23510.1 | 37.916 | 451 | 250 | 15 | 17 | 457 | 20 | 450 | 1.93e-89 | 280 |
| Msa0459030 | AT2G25150.1 | 36.695 | 466 | 261 | 13 | 8 | 460 | 11 | 455 | 5.00e-89 | 279 |
| Msa0459030 | AT3G47170.1 | 35.729 | 473 | 260 | 15 | 10 | 457 | 12 | 465 | 5.18e-83 | 264 |
| Msa0459030 | AT1G28680.1 | 35.230 | 457 | 266 | 14 | 10 | 455 | 4 | 441 | 3.00e-78 | 251 |
| Msa0459030 | AT1G28680.2 | 36.216 | 370 | 208 | 13 | 10 | 367 | 4 | 357 | 2.90e-65 | 215 |
| Msa0459030 | AT3G62160.1 | 30.424 | 401 | 234 | 14 | 16 | 405 | 11 | 377 | 2.42e-48 | 171 |
| Msa0459030 | AT5G41040.2 | 28.166 | 458 | 282 | 17 | 8 | 453 | 15 | 437 | 1.13e-47 | 170 |
| Msa0459030 | AT5G41040.1 | 28.758 | 459 | 278 | 18 | 8 | 453 | 31 | 453 | 1.55e-47 | 170 |
| Msa0459030 | AT3G48720.1 | 29.425 | 452 | 270 | 21 | 13 | 452 | 12 | 426 | 5.06e-43 | 157 |
| Msa0459030 | AT3G03480.1 | 28.105 | 459 | 296 | 14 | 7 | 457 | 16 | 448 | 6.29e-41 | 152 |
| Msa0459030 | AT5G17540.1 | 26.964 | 471 | 287 | 15 | 7 | 457 | 6 | 439 | 4.29e-38 | 144 |
| Msa0459030 | AT5G63560.1 | 29.075 | 454 | 263 | 21 | 13 | 451 | 12 | 421 | 1.70e-36 | 139 |
| Msa0459030 | AT2G40230.1 | 27.603 | 413 | 268 | 14 | 10 | 411 | 5 | 397 | 2.33e-34 | 134 |
| Msa0459030 | AT5G48930.1 | 26.429 | 420 | 260 | 16 | 8 | 406 | 1 | 392 | 2.79e-33 | 130 |
| Msa0459030 | AT1G27620.1 | 25.951 | 447 | 263 | 14 | 17 | 443 | 16 | 414 | 4.70e-31 | 124 |
| Msa0459030 | AT1G03390.1 | 25.117 | 426 | 286 | 15 | 20 | 432 | 32 | 437 | 2.57e-25 | 108 |
| Msa0459030 | AT1G65450.1 | 26.180 | 466 | 291 | 18 | 8 | 455 | 16 | 446 | 1.01e-24 | 106 |
| Msa0459030 | AT2G19070.1 | 29.340 | 409 | 250 | 18 | 67 | 454 | 57 | 447 | 2.36e-23 | 102 |
| Msa0459030 | AT4G31910.1 | 25.604 | 414 | 251 | 20 | 28 | 408 | 29 | 418 | 1.72e-18 | 88.2 |
| Msa0459030 | AT4G15390.1 | 23.651 | 482 | 296 | 20 | 4 | 459 | 2 | 437 | 9.04e-18 | 85.9 |
| Msa0459030 | AT4G15390.2 | 23.651 | 482 | 296 | 20 | 4 | 459 | 2 | 437 | 9.04e-18 | 85.9 |
| Msa0459030 | AT1G24430.1 | 24.048 | 420 | 235 | 20 | 69 | 461 | 63 | 425 | 3.66e-17 | 84.0 |
| Msa0459030 | AT5G07870.1 | 27.599 | 279 | 179 | 9 | 68 | 331 | 72 | 342 | 8.85e-17 | 82.8 |
| Msa0459030 | AT5G07860.1 | 27.099 | 262 | 160 | 11 | 68 | 315 | 72 | 316 | 1.22e-15 | 79.3 |
| Msa0459030 | AT5G07850.1 | 25.316 | 316 | 201 | 13 | 68 | 365 | 70 | 368 | 1.69e-14 | 75.9 |
| Msa0459030 | AT5G47950.1 | 32.653 | 196 | 100 | 10 | 7 | 191 | 3 | 177 | 2.73e-14 | 75.1 |
| Msa0459030 | AT5G23940.1 | 27.692 | 260 | 170 | 11 | 68 | 315 | 65 | 318 | 1.80e-13 | 72.8 |
| Msa0459030 | AT3G30280.1 | 23.188 | 483 | 294 | 23 | 7 | 461 | 3 | 436 | 2.78e-13 | 72.0 |
| Msa0459030 | AT3G26040.1 | 24.473 | 237 | 148 | 9 | 56 | 283 | 44 | 258 | 3.25e-13 | 71.6 |
| Msa0459030 | AT5G23970.1 | 24.628 | 471 | 284 | 24 | 8 | 459 | 1 | 419 | 4.63e-12 | 68.2 |
Find 108 sgRNAs with CRISPR-Local
Find 320 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTACCTAATGGTTATTA+TGG | 0.094646 | 3_3:-55328831 | Msa0459030:CDS |
| CTTGATGGAAATGTAGATTT+TGG | 0.193112 | 3_3:-55328585 | Msa0459030:CDS |
| CCTTTCTTCTGTTAATTACT+TGG | 0.244140 | 3_3:-55329396 | Msa0459030:CDS |
| TCATCATTGTCAAATTTATT+AGG | 0.246582 | 3_3:+55328486 | None:intergenic |
| TCCTTGTTCATAGGGCATTC+TGG | 0.247654 | 3_3:+55329113 | None:intergenic |
| CATCTTTCATTTCAAGCTTA+AGG | 0.254118 | 3_3:+55330403 | None:intergenic |
| TTGACAGAGTGGAAACATTT+AGG | 0.264666 | 3_3:-55328612 | Msa0459030:CDS |
| CTGTAGCATTGTCTTGATTC+AGG | 0.265036 | 3_3:+55329069 | None:intergenic |
| TTAACTTATGACTTGTTTCC+AGG | 0.269862 | 3_3:-55328271 | Msa0459030:three_prime_UTR |
| AACAATTCATGATTCTAATT+CGG | 0.274186 | 3_3:-55330265 | Msa0459030:CDS |
| TTAACCCCTCCTTTCATTGA+TGG | 0.282796 | 3_3:+55328462 | None:intergenic |
| AAATTATGGTGTTCCATTCT+TGG | 0.284915 | 3_3:-55329438 | Msa0459030:CDS |
| ACAATTCATGATTCTAATTC+GGG | 0.288860 | 3_3:-55330264 | Msa0459030:CDS |
| TGGGAAAGAGAGAGACTTAT+TGG | 0.299884 | 3_3:-55329158 | Msa0459030:CDS |
| TTCAATTTCCTCCTTGAACT+TGG | 0.303476 | 3_3:+55328407 | None:intergenic |
| GCAACAGATTCCTTGTTCAT+AGG | 0.312948 | 3_3:+55329104 | None:intergenic |
| AATCCTAATGCAGAAAATTA+TGG | 0.321826 | 3_3:-55329452 | Msa0459030:CDS |
| CTTTACCTAATGGTTATTAT+GGG | 0.350671 | 3_3:-55328830 | Msa0459030:CDS |
| AACTTACCCTTTGGTGTTCA+AGG | 0.353325 | 3_3:-55329321 | Msa0459030:CDS |
| ATCTTTCATTTCAAGCTTAA+GGG | 0.354180 | 3_3:+55330404 | None:intergenic |
| TCCCCTTGCAAGTTCGATAA+TGG | 0.359679 | 3_3:+55329208 | None:intergenic |
| TTCATAGGGCATTCTGGAAA+TGG | 0.363471 | 3_3:+55329119 | None:intergenic |
| AACTTGGGCATGGCAGCAAC+AGG | 0.371483 | 3_3:+55328423 | None:intergenic |
| GTTTCCAGGGAGGTAATGTT+GGG | 0.393031 | 3_3:-55328257 | Msa0459030:three_prime_UTR |
| TGAAGGAAAGTGGAAATATA+AGG | 0.398595 | 3_3:-55328983 | Msa0459030:CDS |
| TTAGCAATTGCTTCCAAGAA+TGG | 0.403315 | 3_3:+55329425 | None:intergenic |
| CTTATGTGAATATTATGTAT+TGG | 0.407900 | 3_3:+55328150 | None:intergenic |
| GGAGGTTTCACAATCGGAAT+GGG | 0.409540 | 3_3:-55329281 | Msa0459030:CDS |
| ATGCAACTTGTTTGCGTCCA+TGG | 0.416476 | 3_3:-55328529 | Msa0459030:CDS |
| ACAACTTTCGAAGCGATTGC+AGG | 0.428496 | 3_3:-55328957 | Msa0459030:CDS |
| TGCTGCCATGCCCAAGTTCA+AGG | 0.433774 | 3_3:-55328418 | Msa0459030:CDS |
| CGAATTACAATGAGGAATCT+AGG | 0.434099 | 3_3:-55328662 | Msa0459030:CDS |
| TGAAGACAAAACTTACCCTT+TGG | 0.442212 | 3_3:-55329330 | Msa0459030:CDS |
| TCAATTTCCTCCTTGAACTT+GGG | 0.445520 | 3_3:+55328408 | None:intergenic |
| GAATTCCCATAATAACCATT+AGG | 0.456288 | 3_3:+55328825 | None:intergenic |
| CAACAGATTCCTTGTTCATA+GGG | 0.458713 | 3_3:+55329105 | None:intergenic |
| CGTTGCGGAGGTTTCACAAT+CGG | 0.459106 | 3_3:-55329287 | Msa0459030:CDS |
| GCTTAAGTTGAGTTTGATGA+AGG | 0.461955 | 3_3:-55329000 | Msa0459030:CDS |
| CACAGAAATTGCAAAGCATA+TGG | 0.462055 | 3_3:-55329363 | Msa0459030:CDS |
| TGGTATTAGACGCAACTTGA+AGG | 0.474505 | 3_3:-55328862 | Msa0459030:CDS |
| CCAAGTAATTAACAGAAGAA+AGG | 0.479071 | 3_3:+55329396 | None:intergenic |
| CAAGTAATTAACAGAAGAAA+GGG | 0.485197 | 3_3:+55329397 | None:intergenic |
| TTGAGTTTGATGAAGGAAAG+TGG | 0.489083 | 3_3:-55328993 | Msa0459030:CDS |
| TTGTCACCTTGAACACCAAA+GGG | 0.494129 | 3_3:+55329315 | None:intergenic |
| ATGCTTTGCAATTTCTGTGT+CGG | 0.497459 | 3_3:+55329367 | None:intergenic |
| CTCAAACTGTTCATGTATAC+CGG | 0.499140 | 3_3:-55330293 | Msa0459030:CDS |
| TGTTTCCAGGGAGGTAATGT+TGG | 0.499707 | 3_3:-55328258 | Msa0459030:three_prime_UTR |
| ATTCAAAGAAGCACTTTCAA+AGG | 0.519773 | 3_3:-55330223 | Msa0459030:CDS |
| AATCATGAATTGTTGATGAC+CGG | 0.519842 | 3_3:+55330274 | None:intergenic |
| CCATAATAACCATTAGGTAA+AGG | 0.523441 | 3_3:+55328831 | None:intergenic |
| TTTCGACGAAAGGAACATAA+GGG | 0.523508 | 3_3:+55328123 | None:intergenic |
| TCTACGTCTTGCAGGTAGAA+TGG | 0.526428 | 3_3:-55329513 | Msa0459030:intron |
| CGGAGGTTTCACAATCGGAA+TGG | 0.531324 | 3_3:-55329282 | Msa0459030:CDS |
| TTCCTCCTTGAACTTGGGCA+TGG | 0.531730 | 3_3:+55328413 | None:intergenic |
| GCAAACAAGTTGCATGGTGC+TGG | 0.535676 | 3_3:+55328537 | None:intergenic |
| GCTTAGTACTGGTGCAGTAA+CGG | 0.538334 | 3_3:-55328637 | Msa0459030:CDS |
| TTTGTCACCTTGAACACCAA+AGG | 0.540211 | 3_3:+55329314 | None:intergenic |
| TCATTGTCAAATTTATTAGG+AGG | 0.540817 | 3_3:+55328489 | None:intergenic |
| ATGGTGAAACATGCTGATGA+TGG | 0.543171 | 3_3:-55329494 | Msa0459030:CDS |
| AGTTTAATAATTTCATAGAG+TGG | 0.546682 | 3_3:+55328753 | None:intergenic |
| TGTCTGATAAGCCATGGAAA+AGG | 0.548339 | 3_3:+55330431 | None:intergenic |
| GAATCTAGGATGCTTAGTAC+TGG | 0.550838 | 3_3:-55328648 | Msa0459030:CDS |
| AAGCCATTATCGAACTTGCA+AGG | 0.551949 | 3_3:-55329211 | Msa0459030:CDS |
| AGCCATTATCGAACTTGCAA+GGG | 0.556732 | 3_3:-55329210 | Msa0459030:CDS |
| ATGATCCATCAATGAAAGGA+GGG | 0.556848 | 3_3:-55328467 | Msa0459030:CDS |
| ACTCCCCAACATTACCTCCC+TGG | 0.564351 | 3_3:+55328253 | None:intergenic |
| TAACTTATGACTTGTTTCCA+GGG | 0.570725 | 3_3:-55328270 | Msa0459030:three_prime_UTR |
| GAAAGTGAAAGAATACAAGA+AGG | 0.574882 | 3_3:+55330351 | None:intergenic |
| AATGATGATCCATCAATGAA+AGG | 0.575055 | 3_3:-55328471 | Msa0459030:CDS |
| TCCAGAATGCCCTATGAACA+AGG | 0.582940 | 3_3:-55329114 | Msa0459030:CDS |
| AAGCGATTGCAGGTTATGTG+TGG | 0.585990 | 3_3:-55328947 | Msa0459030:CDS |
| GAGGTTTCACAATCGGAATG+GGG | 0.593146 | 3_3:-55329280 | Msa0459030:CDS |
| TTTCCAGGGAGGTAATGTTG+GGG | 0.595705 | 3_3:-55328256 | Msa0459030:three_prime_UTR |
| AAACCTAGTATACCTGCAAG+AGG | 0.599532 | 3_3:+55330183 | None:intergenic |
| GTGACAAAATTTCGTTGCGG+AGG | 0.602288 | 3_3:-55329299 | Msa0459030:CDS |
| GTGTTGCACGCTATCTGTGA+CGG | 0.602692 | 3_3:-55329257 | Msa0459030:CDS |
| GCGTCTAATACCAGCTACAA+TGG | 0.604485 | 3_3:+55328872 | None:intergenic |
| GGTAGCTGTCTGATAAGCCA+TGG | 0.606005 | 3_3:+55330425 | None:intergenic |
| GAGTAACGGAGTTCTTGTAA+TGG | 0.606394 | 3_3:-55328207 | Msa0459030:three_prime_UTR |
| GCCCTAAAACTTAACAACAA+TGG | 0.606771 | 3_3:-55328909 | Msa0459030:CDS |
| AAGTTAGTGAGCTTGATGAA+AGG | 0.608750 | 3_3:-55328776 | Msa0459030:CDS |
| ATATCATAAGTAAAACACTA+AGG | 0.611873 | 3_3:+55328333 | None:intergenic |
| TCCCACACAGGTATCGTCGA+GGG | 0.612007 | 3_3:+55329176 | None:intergenic |
| GCATTGTCTTGATTCAGGAA+AGG | 0.613307 | 3_3:+55329074 | None:intergenic |
| GAAAAGGTTTATGAGAAATG+TGG | 0.614216 | 3_3:+55330447 | None:intergenic |
| AGGTTTCACAATCGGAATGG+GGG | 0.619066 | 3_3:-55329279 | Msa0459030:CDS |
| ATACATGAACAGTTTGAGCA+AGG | 0.620162 | 3_3:+55330298 | None:intergenic |
| CACGCTATCTGTGACGGAGT+TGG | 0.625478 | 3_3:-55329251 | Msa0459030:CDS |
| GATGATCCATCAATGAAAGG+AGG | 0.631222 | 3_3:-55328468 | Msa0459030:CDS |
| GCCATTATCGAACTTGCAAG+GGG | 0.631450 | 3_3:-55329209 | Msa0459030:CDS |
| GCTTCTTTGAATACATGACA+AGG | 0.632259 | 3_3:+55330234 | None:intergenic |
| TTCCCACACAGGTATCGTCG+AGG | 0.632339 | 3_3:+55329175 | None:intergenic |
| TGGAGGGTGAAATGATAACA+AGG | 0.634756 | 3_3:-55329022 | Msa0459030:CDS |
| AGTCTCTCTCTTTCCCACAC+AGG | 0.635132 | 3_3:+55329164 | None:intergenic |
| ATGGACGCAAACAAGTTGCA+TGG | 0.637526 | 3_3:+55328531 | None:intergenic |
| CGATTGCAGGTTATGTGTGG+AGG | 0.638354 | 3_3:-55328944 | Msa0459030:CDS |
| ACAGTGCTGACCATTGTAGC+TGG | 0.644789 | 3_3:-55328882 | Msa0459030:CDS |
| AGCCCTCGACGATACCTGTG+TGG | 0.646189 | 3_3:-55329178 | Msa0459030:CDS |
| GGTTTATGAGAAATGTGGCA+AGG | 0.648116 | 3_3:+55330452 | None:intergenic |
| TGATCCATCAATGAAAGGAG+GGG | 0.653576 | 3_3:-55328466 | Msa0459030:CDS |
| CTTATGACTTGTTTCCAGGG+AGG | 0.660679 | 3_3:-55328267 | Msa0459030:three_prime_UTR |
| GCCCTCGACGATACCTGTGT+GGG | 0.667737 | 3_3:-55329177 | Msa0459030:CDS |
| ACTTGGGCATGGCAGCAACA+GGG | 0.669220 | 3_3:+55328424 | None:intergenic |
| TTATTATGGGAATTCATGTG+TGG | 0.669469 | 3_3:-55328817 | Msa0459030:CDS |
| CTTCTTTGAATACATGACAA+GGG | 0.672661 | 3_3:+55330235 | None:intergenic |
| ATTGGAGACGAATTACAATG+AGG | 0.715795 | 3_3:-55328670 | Msa0459030:CDS |
| TGCCATGCCCAAGTTCAAGG+AGG | 0.747229 | 3_3:-55328415 | Msa0459030:CDS |
| AAGGTGACAAAATTTCGTTG+CGG | 0.748989 | 3_3:-55329302 | Msa0459030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAAATTTTAATAAAAATTT+TGG | - | chr3_3:55328610-55328629 | Msa0459030:CDS | 0.0% |
| !!! | TAAATTTTAATAAAAATTTT+GGG | - | chr3_3:55328611-55328630 | Msa0459030:CDS | 0.0% |
| !!! | ATAAATTTTAATAAAAATTT+TGG | - | chr3_3:55328610-55328629 | Msa0459030:CDS | 0.0% |
| !!! | TAAATTTTAATAAAAATTTT+GGG | - | chr3_3:55328611-55328630 | Msa0459030:CDS | 0.0% |
| !! | TTATAAGAAAAAAAATGATT+AGG | + | chr3_3:55328594-55328613 | None:intergenic | 10.0% |
| !!! | TGAAATTTTGAATATTTATA+AGG | + | chr3_3:55328680-55328699 | None:intergenic | 10.0% |
| !!! | AAATTATGATTTTAGTTTAT+AGG | + | chr3_3:55328709-55328728 | None:intergenic | 10.0% |
| !! | TTATAAGAAAAAAAATGATT+AGG | + | chr3_3:55328594-55328613 | None:intergenic | 10.0% |
| !!! | TGAAATTTTGAATATTTATA+AGG | + | chr3_3:55328680-55328699 | None:intergenic | 10.0% |
| !!! | AAATTATGATTTTAGTTTAT+AGG | + | chr3_3:55328709-55328728 | None:intergenic | 10.0% |
| !! | AAACATTTGTATTTAATGAA+AGG | + | chr3_3:55328479-55328498 | None:intergenic | 15.0% |
| !!! | AAATTAGTGTTGTTAAAATA+TGG | - | chr3_3:55328500-55328519 | Msa0459030:CDS | 15.0% |
| !! | TCTACCAAAAAAAATAAATA+TGG | - | chr3_3:55328532-55328551 | Msa0459030:CDS | 15.0% |
| !!! | TAATATAAACCTTTAAAAGA+GGG | - | chr3_3:55328562-55328581 | Msa0459030:CDS | 15.0% |
| !!! | GAAATATATTTTTTTAGATG+AGG | - | chr3_3:55328637-55328656 | Msa0459030:CDS | 15.0% |
| !!! | ATGTTGACATAAAATTTTAA+AGG | + | chr3_3:55328738-55328757 | None:intergenic | 15.0% |
| !!! | TACTAATGGAAAATTTTAAA+AGG | + | chr3_3:55328768-55328787 | None:intergenic | 15.0% |
| !!! | AAAATTTATGTTAGCATTTT+CGG | - | chr3_3:55328802-55328821 | Msa0459030:CDS | 15.0% |
| !!! | ATTTTCTTTTAGCATTTTTA+AGG | + | chr3_3:55328829-55328848 | None:intergenic | 15.0% |
| !!! | AAATGTGATTTTATTTTGTA+AGG | - | chr3_3:55328862-55328881 | Msa0459030:CDS | 15.0% |
| !!! | AAAAAAGACTATCATATTTT+GGG | + | chr3_3:55328937-55328956 | None:intergenic | 15.0% |
| !!! | AAAAAAAGACTATCATATTT+TGG | + | chr3_3:55328938-55328957 | None:intergenic | 15.0% |
| !!! | TAGTCTTTTTTTTTTTGTTT+TGG | - | chr3_3:55328946-55328965 | Msa0459030:CDS | 15.0% |
| !! | TTTCATAAAATATTCAAAAG+TGG | + | chr3_3:55329034-55329053 | None:intergenic | 15.0% |
| !!! | GAAGAAATATTGTTTTAATA+TGG | - | chr3_3:55329585-55329604 | Msa0459030:intron | 15.0% |
| !!! | AAATATTGTTTTAATATGGA+GGG | - | chr3_3:55329589-55329608 | Msa0459030:intron | 15.0% |
| !! | AAACATTTGTATTTAATGAA+AGG | + | chr3_3:55328479-55328498 | None:intergenic | 15.0% |
| !!! | AAATTAGTGTTGTTAAAATA+TGG | - | chr3_3:55328500-55328519 | Msa0459030:CDS | 15.0% |
| !! | TCTACCAAAAAAAATAAATA+TGG | - | chr3_3:55328532-55328551 | Msa0459030:CDS | 15.0% |
| !!! | TAATATAAACCTTTAAAAGA+GGG | - | chr3_3:55328562-55328581 | Msa0459030:CDS | 15.0% |
| !!! | GAAATATATTTTTTTAGATG+AGG | - | chr3_3:55328637-55328656 | Msa0459030:CDS | 15.0% |
| !!! | ATGTTGACATAAAATTTTAA+AGG | + | chr3_3:55328738-55328757 | None:intergenic | 15.0% |
| !!! | TACTAATGGAAAATTTTAAA+AGG | + | chr3_3:55328768-55328787 | None:intergenic | 15.0% |
| !!! | AAAATTTATGTTAGCATTTT+CGG | - | chr3_3:55328802-55328821 | Msa0459030:CDS | 15.0% |
| !!! | ATTTTCTTTTAGCATTTTTA+AGG | + | chr3_3:55328829-55328848 | None:intergenic | 15.0% |
| !!! | AAATGTGATTTTATTTTGTA+AGG | - | chr3_3:55328862-55328881 | Msa0459030:CDS | 15.0% |
| !!! | AAAAAAGACTATCATATTTT+GGG | + | chr3_3:55328937-55328956 | None:intergenic | 15.0% |
| !!! | AAAAAAAGACTATCATATTT+TGG | + | chr3_3:55328938-55328957 | None:intergenic | 15.0% |
| !!! | TAGTCTTTTTTTTTTTGTTT+TGG | - | chr3_3:55328946-55328965 | Msa0459030:CDS | 15.0% |
| !! | TTTCATAAAATATTCAAAAG+TGG | + | chr3_3:55329034-55329053 | None:intergenic | 15.0% |
| !!! | GAAGAAATATTGTTTTAATA+TGG | - | chr3_3:55329585-55329604 | Msa0459030:intron | 15.0% |
| !!! | AAATATTGTTTTAATATGGA+GGG | - | chr3_3:55329589-55329608 | Msa0459030:intron | 15.0% |
| !! | AACAATTCATGATTCTAATT+CGG | - | chr3_3:55328362-55328381 | Msa0459030:three_prime_UTR | 20.0% |
| !!! | TTATTTTTTTTGGTAGATAG+AGG | + | chr3_3:55328529-55328548 | None:intergenic | 20.0% |
| !!! | GCATCCATATTTATTTTTTT+TGG | + | chr3_3:55328539-55328558 | None:intergenic | 20.0% |
| !!! | CTTTTAAAGGTTTATATTAG+AGG | + | chr3_3:55328561-55328580 | None:intergenic | 20.0% |
| !!! | CTAATATAAACCTTTAAAAG+AGG | - | chr3_3:55328561-55328580 | Msa0459030:CDS | 20.0% |
| !!! | ATGCTAACATAAATTTTACA+AGG | + | chr3_3:55328799-55328818 | None:intergenic | 20.0% |
| !!! | TGCAATTTTTCGTAAAATAA+TGG | + | chr3_3:55329006-55329025 | None:intergenic | 20.0% |
| !!! | TATTTTACGAAAAATTGCAA+TGG | - | chr3_3:55329007-55329026 | Msa0459030:CDS | 20.0% |
| !! | TATTAGAATGTCCATAAAAA+TGG | - | chr3_3:55329059-55329078 | Msa0459030:CDS | 20.0% |
| !!! | TTCCATAAAATCCATTTTTA+TGG | + | chr3_3:55329073-55329092 | None:intergenic | 20.0% |
| !!! | GAAATATTGTTTTAATATGG+AGG | - | chr3_3:55329588-55329607 | Msa0459030:intron | 20.0% |
| !! | AGTTTAATAATTTCATAGAG+TGG | + | chr3_3:55329877-55329896 | None:intergenic | 20.0% |
| !! | TCATCATTGTCAAATTTATT+AGG | + | chr3_3:55330144-55330163 | None:intergenic | 20.0% |
| !! | ATATCATAAGTAAAACACTA+AGG | + | chr3_3:55330297-55330316 | None:intergenic | 20.0% |
| !! | CTTATGTGAATATTATGTAT+TGG | + | chr3_3:55330480-55330499 | None:intergenic | 20.0% |
| !! | AACAATTCATGATTCTAATT+CGG | - | chr3_3:55328362-55328381 | Msa0459030:three_prime_UTR | 20.0% |
| !!! | TTATTTTTTTTGGTAGATAG+AGG | + | chr3_3:55328529-55328548 | None:intergenic | 20.0% |
| !!! | GCATCCATATTTATTTTTTT+TGG | + | chr3_3:55328539-55328558 | None:intergenic | 20.0% |
| !!! | CTTTTAAAGGTTTATATTAG+AGG | + | chr3_3:55328561-55328580 | None:intergenic | 20.0% |
| !!! | CTAATATAAACCTTTAAAAG+AGG | - | chr3_3:55328561-55328580 | Msa0459030:CDS | 20.0% |
| !!! | ATGCTAACATAAATTTTACA+AGG | + | chr3_3:55328799-55328818 | None:intergenic | 20.0% |
| !!! | TGCAATTTTTCGTAAAATAA+TGG | + | chr3_3:55329006-55329025 | None:intergenic | 20.0% |
| !!! | TATTTTACGAAAAATTGCAA+TGG | - | chr3_3:55329007-55329026 | Msa0459030:CDS | 20.0% |
| !! | TATTAGAATGTCCATAAAAA+TGG | - | chr3_3:55329059-55329078 | Msa0459030:CDS | 20.0% |
| !!! | TTCCATAAAATCCATTTTTA+TGG | + | chr3_3:55329073-55329092 | None:intergenic | 20.0% |
| !!! | GAAATATTGTTTTAATATGG+AGG | - | chr3_3:55329588-55329607 | Msa0459030:intron | 20.0% |
| !! | AGTTTAATAATTTCATAGAG+TGG | + | chr3_3:55329877-55329896 | None:intergenic | 20.0% |
| !! | TCATCATTGTCAAATTTATT+AGG | + | chr3_3:55330144-55330163 | None:intergenic | 20.0% |
| !! | ATATCATAAGTAAAACACTA+AGG | + | chr3_3:55330297-55330316 | None:intergenic | 20.0% |
| !! | CTTATGTGAATATTATGTAT+TGG | + | chr3_3:55330480-55330499 | None:intergenic | 20.0% |
| ! | ATCTTTCATTTCAAGCTTAA+GGG | + | chr3_3:55328226-55328245 | None:intergenic | 25.0% |
| ! | ACAATTCATGATTCTAATTC+GGG | - | chr3_3:55328363-55328382 | Msa0459030:three_prime_UTR | 25.0% |
| !! | TTTTATTATTATCCTCTTGC+AGG | - | chr3_3:55328432-55328451 | Msa0459030:CDS | 25.0% |
| !! | GATGAGGTTAGATATATTTT+TGG | - | chr3_3:55328653-55328672 | Msa0459030:CDS | 25.0% |
| ! | ACAAGGACTAAAAATACTAA+TGG | + | chr3_3:55328782-55328801 | None:intergenic | 25.0% |
| !!! | GTCCATAAAAATGGATTTTA+TGG | - | chr3_3:55329068-55329087 | Msa0459030:CDS | 25.0% |
| ! | AATCCTAATGCAGAAAATTA+TGG | - | chr3_3:55329175-55329194 | Msa0459030:CDS | 25.0% |
| ! | CAAGTAATTAACAGAAGAAA+GGG | + | chr3_3:55329233-55329252 | None:intergenic | 25.0% |
| !!! | ACCATTGTTGTTAAGTTTTA+GGG | + | chr3_3:55329722-55329741 | None:intergenic | 25.0% |
| ! | CTTTACCTAATGGTTATTAT+GGG | - | chr3_3:55329797-55329816 | Msa0459030:intron | 25.0% |
| !!! | AAACATTTAGGTTTTCTTGA+TGG | - | chr3_3:55330027-55330046 | Msa0459030:intron | 25.0% |
| ! | TCATTGTCAAATTTATTAGG+AGG | + | chr3_3:55330141-55330160 | None:intergenic | 25.0% |
| !!! | GTTTTTAGACAATAGAGTAA+CGG | - | chr3_3:55330406-55330425 | Msa0459030:CDS | 25.0% |
| ! | ATCTTTCATTTCAAGCTTAA+GGG | + | chr3_3:55328226-55328245 | None:intergenic | 25.0% |
| ! | ACAATTCATGATTCTAATTC+GGG | - | chr3_3:55328363-55328382 | Msa0459030:three_prime_UTR | 25.0% |
| !! | TTTTATTATTATCCTCTTGC+AGG | - | chr3_3:55328432-55328451 | Msa0459030:CDS | 25.0% |
| !! | GATGAGGTTAGATATATTTT+TGG | - | chr3_3:55328653-55328672 | Msa0459030:CDS | 25.0% |
| ! | ACAAGGACTAAAAATACTAA+TGG | + | chr3_3:55328782-55328801 | None:intergenic | 25.0% |
| !!! | GTCCATAAAAATGGATTTTA+TGG | - | chr3_3:55329068-55329087 | Msa0459030:CDS | 25.0% |
| ! | AATCCTAATGCAGAAAATTA+TGG | - | chr3_3:55329175-55329194 | Msa0459030:CDS | 25.0% |
| ! | CAAGTAATTAACAGAAGAAA+GGG | + | chr3_3:55329233-55329252 | None:intergenic | 25.0% |
| !!! | ACCATTGTTGTTAAGTTTTA+GGG | + | chr3_3:55329722-55329741 | None:intergenic | 25.0% |
| ! | CTTTACCTAATGGTTATTAT+GGG | - | chr3_3:55329797-55329816 | Msa0459030:intron | 25.0% |
| !!! | AAACATTTAGGTTTTCTTGA+TGG | - | chr3_3:55330027-55330046 | Msa0459030:intron | 25.0% |
| ! | TCATTGTCAAATTTATTAGG+AGG | + | chr3_3:55330141-55330160 | None:intergenic | 25.0% |
| !!! | GTTTTTAGACAATAGAGTAA+CGG | - | chr3_3:55330406-55330425 | Msa0459030:CDS | 25.0% |
| GAAAAGGTTTATGAGAAATG+TGG | + | chr3_3:55328183-55328202 | None:intergenic | 30.0% | |
| ! | TTTCTCATAAACCTTTTCCA+TGG | - | chr3_3:55328185-55328204 | Msa0459030:three_prime_UTR | 30.0% |
| CATCTTTCATTTCAAGCTTA+AGG | + | chr3_3:55328227-55328246 | None:intergenic | 30.0% | |
| !! | CAAGAAGGAATTGATTTTGA+TGG | + | chr3_3:55328264-55328283 | None:intergenic | 30.0% |
| GAAAGTGAAAGAATACAAGA+AGG | + | chr3_3:55328279-55328298 | None:intergenic | 30.0% | |
| !! | AATCATGAATTGTTGATGAC+CGG | + | chr3_3:55328356-55328375 | None:intergenic | 30.0% |
| CTTCTTTGAATACATGACAA+GGG | + | chr3_3:55328395-55328414 | None:intergenic | 30.0% | |
| !! | ATTCAAAGAAGCACTTTCAA+AGG | - | chr3_3:55328404-55328423 | Msa0459030:CDS | 30.0% |
| ! | ACACCATAATTTTCTGCATT+AGG | + | chr3_3:55329181-55329200 | None:intergenic | 30.0% |
| AAATTATGGTGTTCCATTCT+TGG | - | chr3_3:55329189-55329208 | Msa0459030:CDS | 30.0% | |
| CCAAGTAATTAACAGAAGAA+AGG | + | chr3_3:55329234-55329253 | None:intergenic | 30.0% | |
| CCTTTCTTCTGTTAATTACT+TGG | - | chr3_3:55329231-55329250 | Msa0459030:CDS | 30.0% | |
| TGAAGGAAAGTGGAAATATA+AGG | - | chr3_3:55329644-55329663 | Msa0459030:intron | 30.0% | |
| !! | CACCATTGTTGTTAAGTTTT+AGG | + | chr3_3:55329723-55329742 | None:intergenic | 30.0% |
| !! | GATTTTGATCCTTTACCTAA+TGG | - | chr3_3:55329787-55329806 | Msa0459030:intron | 30.0% |
| CCATAATAACCATTAGGTAA+AGG | + | chr3_3:55329799-55329818 | None:intergenic | 30.0% | |
| CCTTTACCTAATGGTTATTA+TGG | - | chr3_3:55329796-55329815 | Msa0459030:intron | 30.0% | |
| GAATTCCCATAATAACCATT+AGG | + | chr3_3:55329805-55329824 | None:intergenic | 30.0% | |
| TTATTATGGGAATTCATGTG+TGG | - | chr3_3:55329810-55329829 | Msa0459030:intron | 30.0% | |
| ! | ATTTTTGACAAAATCAGTGG+TGG | + | chr3_3:55329926-55329945 | None:intergenic | 30.0% |
| ! | CGAATTTTTGACAAAATCAG+TGG | + | chr3_3:55329929-55329948 | None:intergenic | 30.0% |
| CAAAAATTCGATCAACACAT+TGG | - | chr3_3:55329939-55329958 | Msa0459030:intron | 30.0% | |
| ! | CTTGATGGAAATGTAGATTT+TGG | - | chr3_3:55330042-55330061 | Msa0459030:intron | 30.0% |
| ! | ATGGAAATGTAGATTTTGGA+GGG | - | chr3_3:55330046-55330065 | Msa0459030:intron | 30.0% |
| TGTAAAAATGCTCATTTCCA+TGG | + | chr3_3:55330118-55330137 | None:intergenic | 30.0% | |
| AATGATGATCCATCAATGAA+AGG | - | chr3_3:55330156-55330175 | Msa0459030:intron | 30.0% | |
| !! | TTAACTTATGACTTGTTTCC+AGG | - | chr3_3:55330356-55330375 | Msa0459030:CDS | 30.0% |
| !! | TAACTTATGACTTGTTTCCA+GGG | - | chr3_3:55330357-55330376 | Msa0459030:CDS | 30.0% |
| GAAAAGGTTTATGAGAAATG+TGG | + | chr3_3:55328183-55328202 | None:intergenic | 30.0% | |
| ! | TTTCTCATAAACCTTTTCCA+TGG | - | chr3_3:55328185-55328204 | Msa0459030:three_prime_UTR | 30.0% |
| CATCTTTCATTTCAAGCTTA+AGG | + | chr3_3:55328227-55328246 | None:intergenic | 30.0% | |
| !! | CAAGAAGGAATTGATTTTGA+TGG | + | chr3_3:55328264-55328283 | None:intergenic | 30.0% |
| GAAAGTGAAAGAATACAAGA+AGG | + | chr3_3:55328279-55328298 | None:intergenic | 30.0% | |
| !! | AATCATGAATTGTTGATGAC+CGG | + | chr3_3:55328356-55328375 | None:intergenic | 30.0% |
| CTTCTTTGAATACATGACAA+GGG | + | chr3_3:55328395-55328414 | None:intergenic | 30.0% | |
| !! | ATTCAAAGAAGCACTTTCAA+AGG | - | chr3_3:55328404-55328423 | Msa0459030:CDS | 30.0% |
| ! | ACACCATAATTTTCTGCATT+AGG | + | chr3_3:55329181-55329200 | None:intergenic | 30.0% |
| AAATTATGGTGTTCCATTCT+TGG | - | chr3_3:55329189-55329208 | Msa0459030:CDS | 30.0% | |
| CCAAGTAATTAACAGAAGAA+AGG | + | chr3_3:55329234-55329253 | None:intergenic | 30.0% | |
| CCTTTCTTCTGTTAATTACT+TGG | - | chr3_3:55329231-55329250 | Msa0459030:CDS | 30.0% | |
| TGAAGGAAAGTGGAAATATA+AGG | - | chr3_3:55329644-55329663 | Msa0459030:intron | 30.0% | |
| !! | CACCATTGTTGTTAAGTTTT+AGG | + | chr3_3:55329723-55329742 | None:intergenic | 30.0% |
| !! | GATTTTGATCCTTTACCTAA+TGG | - | chr3_3:55329787-55329806 | Msa0459030:intron | 30.0% |
| CCATAATAACCATTAGGTAA+AGG | + | chr3_3:55329799-55329818 | None:intergenic | 30.0% | |
| CCTTTACCTAATGGTTATTA+TGG | - | chr3_3:55329796-55329815 | Msa0459030:intron | 30.0% | |
| GAATTCCCATAATAACCATT+AGG | + | chr3_3:55329805-55329824 | None:intergenic | 30.0% | |
| TTATTATGGGAATTCATGTG+TGG | - | chr3_3:55329810-55329829 | Msa0459030:intron | 30.0% | |
| ! | ATTTTTGACAAAATCAGTGG+TGG | + | chr3_3:55329926-55329945 | None:intergenic | 30.0% |
| ! | CGAATTTTTGACAAAATCAG+TGG | + | chr3_3:55329929-55329948 | None:intergenic | 30.0% |
| CAAAAATTCGATCAACACAT+TGG | - | chr3_3:55329939-55329958 | Msa0459030:intron | 30.0% | |
| ! | CTTGATGGAAATGTAGATTT+TGG | - | chr3_3:55330042-55330061 | Msa0459030:intron | 30.0% |
| ! | ATGGAAATGTAGATTTTGGA+GGG | - | chr3_3:55330046-55330065 | Msa0459030:intron | 30.0% |
| TGTAAAAATGCTCATTTCCA+TGG | + | chr3_3:55330118-55330137 | None:intergenic | 30.0% | |
| AATGATGATCCATCAATGAA+AGG | - | chr3_3:55330156-55330175 | Msa0459030:intron | 30.0% | |
| !! | TTAACTTATGACTTGTTTCC+AGG | - | chr3_3:55330356-55330375 | Msa0459030:CDS | 30.0% |
| !! | TAACTTATGACTTGTTTCCA+GGG | - | chr3_3:55330357-55330376 | Msa0459030:CDS | 30.0% |
| ATACATGAACAGTTTGAGCA+AGG | + | chr3_3:55328332-55328351 | None:intergenic | 35.0% | |
| CTCAAACTGTTCATGTATAC+CGG | - | chr3_3:55328334-55328353 | Msa0459030:three_prime_UTR | 35.0% | |
| GCTTCTTTGAATACATGACA+AGG | + | chr3_3:55328396-55328415 | None:intergenic | 35.0% | |
| TTAGCAATTGCTTCCAAGAA+TGG | + | chr3_3:55329205-55329224 | None:intergenic | 35.0% | |
| ATGCTTTGCAATTTCTGTGT+CGG | + | chr3_3:55329263-55329282 | None:intergenic | 35.0% | |
| CACAGAAATTGCAAAGCATA+TGG | - | chr3_3:55329264-55329283 | Msa0459030:CDS | 35.0% | |
| TGAAGACAAAACTTACCCTT+TGG | - | chr3_3:55329297-55329316 | Msa0459030:CDS | 35.0% | |
| AAGGTGACAAAATTTCGTTG+CGG | - | chr3_3:55329325-55329344 | Msa0459030:CDS | 35.0% | |
| CAACAGATTCCTTGTTCATA+GGG | + | chr3_3:55329525-55329544 | None:intergenic | 35.0% | |
| !! | GCTTAAGTTGAGTTTGATGA+AGG | - | chr3_3:55329627-55329646 | Msa0459030:intron | 35.0% |
| TTGAGTTTGATGAAGGAAAG+TGG | - | chr3_3:55329634-55329653 | Msa0459030:intron | 35.0% | |
| GCCCTAAAACTTAACAACAA+TGG | - | chr3_3:55329718-55329737 | Msa0459030:intron | 35.0% | |
| AAGTTAGTGAGCTTGATGAA+AGG | - | chr3_3:55329851-55329870 | Msa0459030:intron | 35.0% | |
| ATTGGAGACGAATTACAATG+AGG | - | chr3_3:55329957-55329976 | Msa0459030:intron | 35.0% | |
| CGAATTACAATGAGGAATCT+AGG | - | chr3_3:55329965-55329984 | Msa0459030:intron | 35.0% | |
| TTGACAGAGTGGAAACATTT+AGG | - | chr3_3:55330015-55330034 | Msa0459030:intron | 35.0% | |
| ! | GATGGAAATGTAGATTTTGG+AGG | - | chr3_3:55330045-55330064 | Msa0459030:intron | 35.0% |
| ATGATCCATCAATGAAAGGA+GGG | - | chr3_3:55330160-55330179 | Msa0459030:intron | 35.0% | |
| TCAATTTCCTCCTTGAACTT+GGG | + | chr3_3:55330222-55330241 | None:intergenic | 35.0% | |
| TTCAATTTCCTCCTTGAACT+TGG | + | chr3_3:55330223-55330242 | None:intergenic | 35.0% | |
| ATACATGAACAGTTTGAGCA+AGG | + | chr3_3:55328332-55328351 | None:intergenic | 35.0% | |
| CTCAAACTGTTCATGTATAC+CGG | - | chr3_3:55328334-55328353 | Msa0459030:three_prime_UTR | 35.0% | |
| GCTTCTTTGAATACATGACA+AGG | + | chr3_3:55328396-55328415 | None:intergenic | 35.0% | |
| TTAGCAATTGCTTCCAAGAA+TGG | + | chr3_3:55329205-55329224 | None:intergenic | 35.0% | |
| ATGCTTTGCAATTTCTGTGT+CGG | + | chr3_3:55329263-55329282 | None:intergenic | 35.0% | |
| CACAGAAATTGCAAAGCATA+TGG | - | chr3_3:55329264-55329283 | Msa0459030:CDS | 35.0% | |
| TGAAGACAAAACTTACCCTT+TGG | - | chr3_3:55329297-55329316 | Msa0459030:CDS | 35.0% | |
| AAGGTGACAAAATTTCGTTG+CGG | - | chr3_3:55329325-55329344 | Msa0459030:CDS | 35.0% | |
| CAACAGATTCCTTGTTCATA+GGG | + | chr3_3:55329525-55329544 | None:intergenic | 35.0% | |
| !! | GCTTAAGTTGAGTTTGATGA+AGG | - | chr3_3:55329627-55329646 | Msa0459030:intron | 35.0% |
| TTGAGTTTGATGAAGGAAAG+TGG | - | chr3_3:55329634-55329653 | Msa0459030:intron | 35.0% | |
| GCCCTAAAACTTAACAACAA+TGG | - | chr3_3:55329718-55329737 | Msa0459030:intron | 35.0% | |
| AAGTTAGTGAGCTTGATGAA+AGG | - | chr3_3:55329851-55329870 | Msa0459030:intron | 35.0% | |
| ATTGGAGACGAATTACAATG+AGG | - | chr3_3:55329957-55329976 | Msa0459030:intron | 35.0% | |
| CGAATTACAATGAGGAATCT+AGG | - | chr3_3:55329965-55329984 | Msa0459030:intron | 35.0% | |
| TTGACAGAGTGGAAACATTT+AGG | - | chr3_3:55330015-55330034 | Msa0459030:intron | 35.0% | |
| ! | GATGGAAATGTAGATTTTGG+AGG | - | chr3_3:55330045-55330064 | Msa0459030:intron | 35.0% |
| ATGATCCATCAATGAAAGGA+GGG | - | chr3_3:55330160-55330179 | Msa0459030:intron | 35.0% | |
| TCAATTTCCTCCTTGAACTT+GGG | + | chr3_3:55330222-55330241 | None:intergenic | 35.0% | |
| TTCAATTTCCTCCTTGAACT+TGG | + | chr3_3:55330223-55330242 | None:intergenic | 35.0% | |
| GGTTTATGAGAAATGTGGCA+AGG | + | chr3_3:55328178-55328197 | None:intergenic | 40.0% | |
| TGTCTGATAAGCCATGGAAA+AGG | + | chr3_3:55328199-55328218 | None:intergenic | 40.0% | |
| TATCCTCTTGCAGGTATACT+AGG | - | chr3_3:55328441-55328460 | Msa0459030:CDS | 40.0% | |
| AAACCTAGTATACCTGCAAG+AGG | + | chr3_3:55328447-55328466 | None:intergenic | 40.0% | |
| ! | AGGCATACACCCTCTTTTAA+AGG | + | chr3_3:55328574-55328593 | None:intergenic | 40.0% |
| AACATATCTCTACGTCTTGC+AGG | - | chr3_3:55329106-55329125 | Msa0459030:CDS | 40.0% | |
| ATGGTGAAACATGCTGATGA+TGG | - | chr3_3:55329133-55329152 | Msa0459030:CDS | 40.0% | |
| !! | AACTTACCCTTTGGTGTTCA+AGG | - | chr3_3:55329306-55329325 | Msa0459030:CDS | 40.0% |
| TTGTCACCTTGAACACCAAA+GGG | + | chr3_3:55329315-55329334 | None:intergenic | 40.0% | |
| TTTGTCACCTTGAACACCAA+AGG | + | chr3_3:55329316-55329335 | None:intergenic | 40.0% | |
| AAGCCATTATCGAACTTGCA+AGG | - | chr3_3:55329416-55329435 | Msa0459030:CDS | 40.0% | |
| AGCCATTATCGAACTTGCAA+GGG | - | chr3_3:55329417-55329436 | Msa0459030:CDS | 40.0% | |
| TGGGAAAGAGAGAGACTTAT+TGG | - | chr3_3:55329469-55329488 | Msa0459030:CDS | 40.0% | |
| ! | TTCATAGGGCATTCTGGAAA+TGG | + | chr3_3:55329511-55329530 | None:intergenic | 40.0% |
| GCAACAGATTCCTTGTTCAT+AGG | + | chr3_3:55329526-55329545 | None:intergenic | 40.0% | |
| GCATTGTCTTGATTCAGGAA+AGG | + | chr3_3:55329556-55329575 | None:intergenic | 40.0% | |
| CTGTAGCATTGTCTTGATTC+AGG | + | chr3_3:55329561-55329580 | None:intergenic | 40.0% | |
| TGGAGGGTGAAATGATAACA+AGG | - | chr3_3:55329605-55329624 | Msa0459030:intron | 40.0% | |
| TGGTATTAGACGCAACTTGA+AGG | - | chr3_3:55329765-55329784 | Msa0459030:intron | 40.0% | |
| ! | GAATCTAGGATGCTTAGTAC+TGG | - | chr3_3:55329979-55329998 | Msa0459030:intron | 40.0% |
| GATGATCCATCAATGAAAGG+AGG | - | chr3_3:55330159-55330178 | Msa0459030:intron | 40.0% | |
| TGATCCATCAATGAAAGGAG+GGG | - | chr3_3:55330161-55330180 | Msa0459030:intron | 40.0% | |
| TTAACCCCTCCTTTCATTGA+TGG | + | chr3_3:55330168-55330187 | None:intergenic | 40.0% | |
| ! | GAGTAACGGAGTTCTTGTAA+TGG | - | chr3_3:55330420-55330439 | Msa0459030:CDS | 40.0% |
| GGTTTATGAGAAATGTGGCA+AGG | + | chr3_3:55328178-55328197 | None:intergenic | 40.0% | |
| TGTCTGATAAGCCATGGAAA+AGG | + | chr3_3:55328199-55328218 | None:intergenic | 40.0% | |
| TATCCTCTTGCAGGTATACT+AGG | - | chr3_3:55328441-55328460 | Msa0459030:CDS | 40.0% | |
| AAACCTAGTATACCTGCAAG+AGG | + | chr3_3:55328447-55328466 | None:intergenic | 40.0% | |
| ! | AGGCATACACCCTCTTTTAA+AGG | + | chr3_3:55328574-55328593 | None:intergenic | 40.0% |
| AACATATCTCTACGTCTTGC+AGG | - | chr3_3:55329106-55329125 | Msa0459030:CDS | 40.0% | |
| ATGGTGAAACATGCTGATGA+TGG | - | chr3_3:55329133-55329152 | Msa0459030:CDS | 40.0% | |
| !! | AACTTACCCTTTGGTGTTCA+AGG | - | chr3_3:55329306-55329325 | Msa0459030:CDS | 40.0% |
| TTGTCACCTTGAACACCAAA+GGG | + | chr3_3:55329315-55329334 | None:intergenic | 40.0% | |
| TTTGTCACCTTGAACACCAA+AGG | + | chr3_3:55329316-55329335 | None:intergenic | 40.0% | |
| AAGCCATTATCGAACTTGCA+AGG | - | chr3_3:55329416-55329435 | Msa0459030:CDS | 40.0% | |
| AGCCATTATCGAACTTGCAA+GGG | - | chr3_3:55329417-55329436 | Msa0459030:CDS | 40.0% | |
| TGGGAAAGAGAGAGACTTAT+TGG | - | chr3_3:55329469-55329488 | Msa0459030:CDS | 40.0% | |
| ! | TTCATAGGGCATTCTGGAAA+TGG | + | chr3_3:55329511-55329530 | None:intergenic | 40.0% |
| GCAACAGATTCCTTGTTCAT+AGG | + | chr3_3:55329526-55329545 | None:intergenic | 40.0% | |
| GCATTGTCTTGATTCAGGAA+AGG | + | chr3_3:55329556-55329575 | None:intergenic | 40.0% | |
| CTGTAGCATTGTCTTGATTC+AGG | + | chr3_3:55329561-55329580 | None:intergenic | 40.0% | |
| TGGAGGGTGAAATGATAACA+AGG | - | chr3_3:55329605-55329624 | Msa0459030:intron | 40.0% | |
| TGGTATTAGACGCAACTTGA+AGG | - | chr3_3:55329765-55329784 | Msa0459030:intron | 40.0% | |
| ! | GAATCTAGGATGCTTAGTAC+TGG | - | chr3_3:55329979-55329998 | Msa0459030:intron | 40.0% |
| GATGATCCATCAATGAAAGG+AGG | - | chr3_3:55330159-55330178 | Msa0459030:intron | 40.0% | |
| TGATCCATCAATGAAAGGAG+GGG | - | chr3_3:55330161-55330180 | Msa0459030:intron | 40.0% | |
| TTAACCCCTCCTTTCATTGA+TGG | + | chr3_3:55330168-55330187 | None:intergenic | 40.0% | |
| ! | GAGTAACGGAGTTCTTGTAA+TGG | - | chr3_3:55330420-55330439 | Msa0459030:CDS | 40.0% |
| TCTACGTCTTGCAGGTAGAA+TGG | - | chr3_3:55329114-55329133 | Msa0459030:CDS | 45.0% | |
| GTGACAAAATTTCGTTGCGG+AGG | - | chr3_3:55329328-55329347 | Msa0459030:CDS | 45.0% | |
| GGAGGTTTCACAATCGGAAT+GGG | - | chr3_3:55329346-55329365 | Msa0459030:CDS | 45.0% | |
| GAGGTTTCACAATCGGAATG+GGG | - | chr3_3:55329347-55329366 | Msa0459030:CDS | 45.0% | |
| AGGTTTCACAATCGGAATGG+GGG | - | chr3_3:55329348-55329367 | Msa0459030:CDS | 45.0% | |
| GCCATTATCGAACTTGCAAG+GGG | - | chr3_3:55329418-55329437 | Msa0459030:CDS | 45.0% | |
| TCCCCTTGCAAGTTCGATAA+TGG | + | chr3_3:55329422-55329441 | None:intergenic | 45.0% | |
| TCCAGAATGCCCTATGAACA+AGG | - | chr3_3:55329513-55329532 | Msa0459030:intron | 45.0% | |
| ! | TCCTTGTTCATAGGGCATTC+TGG | + | chr3_3:55329517-55329536 | None:intergenic | 45.0% |
| ACAACTTTCGAAGCGATTGC+AGG | - | chr3_3:55329670-55329689 | Msa0459030:intron | 45.0% | |
| AAGCGATTGCAGGTTATGTG+TGG | - | chr3_3:55329680-55329699 | Msa0459030:intron | 45.0% | |
| GCGTCTAATACCAGCTACAA+TGG | + | chr3_3:55329758-55329777 | None:intergenic | 45.0% | |
| !! | GCTTAGTACTGGTGCAGTAA+CGG | - | chr3_3:55329990-55330009 | Msa0459030:intron | 45.0% |
| !! | CAGTAACGGTTTTGACAGAG+TGG | - | chr3_3:55330004-55330023 | Msa0459030:intron | 45.0% |
| ATGGACGCAAACAAGTTGCA+TGG | + | chr3_3:55330099-55330118 | None:intergenic | 45.0% | |
| ! | ATGCAACTTGTTTGCGTCCA+TGG | - | chr3_3:55330098-55330117 | Msa0459030:intron | 45.0% |
| !! | CTTATGACTTGTTTCCAGGG+AGG | - | chr3_3:55330360-55330379 | Msa0459030:CDS | 45.0% |
| TGTTTCCAGGGAGGTAATGT+TGG | - | chr3_3:55330369-55330388 | Msa0459030:CDS | 45.0% | |
| GTTTCCAGGGAGGTAATGTT+GGG | - | chr3_3:55330370-55330389 | Msa0459030:CDS | 45.0% | |
| TTTCCAGGGAGGTAATGTTG+GGG | - | chr3_3:55330371-55330390 | Msa0459030:CDS | 45.0% | |
| TCTACGTCTTGCAGGTAGAA+TGG | - | chr3_3:55329114-55329133 | Msa0459030:CDS | 45.0% | |
| GTGACAAAATTTCGTTGCGG+AGG | - | chr3_3:55329328-55329347 | Msa0459030:CDS | 45.0% | |
| GGAGGTTTCACAATCGGAAT+GGG | - | chr3_3:55329346-55329365 | Msa0459030:CDS | 45.0% | |
| GAGGTTTCACAATCGGAATG+GGG | - | chr3_3:55329347-55329366 | Msa0459030:CDS | 45.0% | |
| AGGTTTCACAATCGGAATGG+GGG | - | chr3_3:55329348-55329367 | Msa0459030:CDS | 45.0% | |
| GCCATTATCGAACTTGCAAG+GGG | - | chr3_3:55329418-55329437 | Msa0459030:CDS | 45.0% | |
| TCCCCTTGCAAGTTCGATAA+TGG | + | chr3_3:55329422-55329441 | None:intergenic | 45.0% | |
| TCCAGAATGCCCTATGAACA+AGG | - | chr3_3:55329513-55329532 | Msa0459030:intron | 45.0% | |
| ! | TCCTTGTTCATAGGGCATTC+TGG | + | chr3_3:55329517-55329536 | None:intergenic | 45.0% |
| ACAACTTTCGAAGCGATTGC+AGG | - | chr3_3:55329670-55329689 | Msa0459030:intron | 45.0% | |
| AAGCGATTGCAGGTTATGTG+TGG | - | chr3_3:55329680-55329699 | Msa0459030:intron | 45.0% | |
| GCGTCTAATACCAGCTACAA+TGG | + | chr3_3:55329758-55329777 | None:intergenic | 45.0% | |
| !! | GCTTAGTACTGGTGCAGTAA+CGG | - | chr3_3:55329990-55330009 | Msa0459030:intron | 45.0% |
| !! | CAGTAACGGTTTTGACAGAG+TGG | - | chr3_3:55330004-55330023 | Msa0459030:intron | 45.0% |
| ATGGACGCAAACAAGTTGCA+TGG | + | chr3_3:55330099-55330118 | None:intergenic | 45.0% | |
| ! | ATGCAACTTGTTTGCGTCCA+TGG | - | chr3_3:55330098-55330117 | Msa0459030:intron | 45.0% |
| !! | CTTATGACTTGTTTCCAGGG+AGG | - | chr3_3:55330360-55330379 | Msa0459030:CDS | 45.0% |
| TGTTTCCAGGGAGGTAATGT+TGG | - | chr3_3:55330369-55330388 | Msa0459030:CDS | 45.0% | |
| GTTTCCAGGGAGGTAATGTT+GGG | - | chr3_3:55330370-55330389 | Msa0459030:CDS | 45.0% | |
| TTTCCAGGGAGGTAATGTTG+GGG | - | chr3_3:55330371-55330390 | Msa0459030:CDS | 45.0% | |
| GGTAGCTGTCTGATAAGCCA+TGG | + | chr3_3:55328205-55328224 | None:intergenic | 50.0% | |
| CGTTGCGGAGGTTTCACAAT+CGG | - | chr3_3:55329340-55329359 | Msa0459030:CDS | 50.0% | |
| CGGAGGTTTCACAATCGGAA+TGG | - | chr3_3:55329345-55329364 | Msa0459030:CDS | 50.0% | |
| GTGTTGCACGCTATCTGTGA+CGG | - | chr3_3:55329370-55329389 | Msa0459030:CDS | 50.0% | |
| AGTCTCTCTCTTTCCCACAC+AGG | + | chr3_3:55329466-55329485 | None:intergenic | 50.0% | |
| CGATTGCAGGTTATGTGTGG+AGG | - | chr3_3:55329683-55329702 | Msa0459030:intron | 50.0% | |
| !! | ACAGTGCTGACCATTGTAGC+TGG | - | chr3_3:55329745-55329764 | Msa0459030:intron | 50.0% |
| GCAAACAAGTTGCATGGTGC+TGG | + | chr3_3:55330093-55330112 | None:intergenic | 50.0% | |
| TTCCTCCTTGAACTTGGGCA+TGG | + | chr3_3:55330217-55330236 | None:intergenic | 50.0% | |
| GGTAGCTGTCTGATAAGCCA+TGG | + | chr3_3:55328205-55328224 | None:intergenic | 50.0% | |
| CGTTGCGGAGGTTTCACAAT+CGG | - | chr3_3:55329340-55329359 | Msa0459030:CDS | 50.0% | |
| CGGAGGTTTCACAATCGGAA+TGG | - | chr3_3:55329345-55329364 | Msa0459030:CDS | 50.0% | |
| GTGTTGCACGCTATCTGTGA+CGG | - | chr3_3:55329370-55329389 | Msa0459030:CDS | 50.0% | |
| AGTCTCTCTCTTTCCCACAC+AGG | + | chr3_3:55329466-55329485 | None:intergenic | 50.0% | |
| CGATTGCAGGTTATGTGTGG+AGG | - | chr3_3:55329683-55329702 | Msa0459030:intron | 50.0% | |
| !! | ACAGTGCTGACCATTGTAGC+TGG | - | chr3_3:55329745-55329764 | Msa0459030:intron | 50.0% |
| GCAAACAAGTTGCATGGTGC+TGG | + | chr3_3:55330093-55330112 | None:intergenic | 50.0% | |
| TTCCTCCTTGAACTTGGGCA+TGG | + | chr3_3:55330217-55330236 | None:intergenic | 50.0% | |
| ! | CACGCTATCTGTGACGGAGT+TGG | - | chr3_3:55329376-55329395 | Msa0459030:CDS | 55.0% |
| ! | TCCCACACAGGTATCGTCGA+GGG | + | chr3_3:55329454-55329473 | None:intergenic | 55.0% |
| ! | TTCCCACACAGGTATCGTCG+AGG | + | chr3_3:55329455-55329474 | None:intergenic | 55.0% |
| ACTTGGGCATGGCAGCAACA+GGG | + | chr3_3:55330206-55330225 | None:intergenic | 55.0% | |
| AACTTGGGCATGGCAGCAAC+AGG | + | chr3_3:55330207-55330226 | None:intergenic | 55.0% | |
| TGCTGCCATGCCCAAGTTCA+AGG | - | chr3_3:55330209-55330228 | Msa0459030:CDS | 55.0% | |
| TGCCATGCCCAAGTTCAAGG+AGG | - | chr3_3:55330212-55330231 | Msa0459030:CDS | 55.0% | |
| ACTCCCCAACATTACCTCCC+TGG | + | chr3_3:55330377-55330396 | None:intergenic | 55.0% | |
| ! | CACGCTATCTGTGACGGAGT+TGG | - | chr3_3:55329376-55329395 | Msa0459030:CDS | 55.0% |
| ! | TCCCACACAGGTATCGTCGA+GGG | + | chr3_3:55329454-55329473 | None:intergenic | 55.0% |
| ! | TTCCCACACAGGTATCGTCG+AGG | + | chr3_3:55329455-55329474 | None:intergenic | 55.0% |
| ACTTGGGCATGGCAGCAACA+GGG | + | chr3_3:55330206-55330225 | None:intergenic | 55.0% | |
| AACTTGGGCATGGCAGCAAC+AGG | + | chr3_3:55330207-55330226 | None:intergenic | 55.0% | |
| TGCTGCCATGCCCAAGTTCA+AGG | - | chr3_3:55330209-55330228 | Msa0459030:CDS | 55.0% | |
| TGCCATGCCCAAGTTCAAGG+AGG | - | chr3_3:55330212-55330231 | Msa0459030:CDS | 55.0% | |
| ACTCCCCAACATTACCTCCC+TGG | + | chr3_3:55330377-55330396 | None:intergenic | 55.0% | |
| AGCCCTCGACGATACCTGTG+TGG | - | chr3_3:55329449-55329468 | Msa0459030:CDS | 60.0% | |
| GCCCTCGACGATACCTGTGT+GGG | - | chr3_3:55329450-55329469 | Msa0459030:CDS | 60.0% | |
| AGCCCTCGACGATACCTGTG+TGG | - | chr3_3:55329449-55329468 | Msa0459030:CDS | 60.0% | |
| GCCCTCGACGATACCTGTGT+GGG | - | chr3_3:55329450-55329469 | Msa0459030:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 55328136 | 55330513 | 55328136 | ID=Msa0459030;Name=Msa0459030 |
| chr3_3 | mRNA | 55328136 | 55330513 | 55328136 | ID=Msa0459030-mRNA-1;Parent=Msa0459030;Name=Msa0459030-mRNA-1;_AED=0.01;_eAED=0.01;_QI=68|1|1|1|1|1|2|250|461 |
| chr3_3 | exon | 55328136 | 55329521 | 55328136 | ID=Msa0459030-mRNA-1:exon:10957;Parent=Msa0459030-mRNA-1 |
| chr3_3 | exon | 55330196 | 55330513 | 55330196 | ID=Msa0459030-mRNA-1:exon:10956;Parent=Msa0459030-mRNA-1 |
| chr3_3 | five_prime_UTR | 55330446 | 55330513 | 55330446 | ID=Msa0459030-mRNA-1:five_prime_utr;Parent=Msa0459030-mRNA-1 |
| chr3_3 | CDS | 55330196 | 55330445 | 55330196 | ID=Msa0459030-mRNA-1:cds;Parent=Msa0459030-mRNA-1 |
| chr3_3 | CDS | 55328386 | 55329521 | 55328386 | ID=Msa0459030-mRNA-1:cds;Parent=Msa0459030-mRNA-1 |
| chr3_3 | three_prime_UTR | 55328136 | 55328385 | 55328136 | ID=Msa0459030-mRNA-1:three_prime_utr;Parent=Msa0459030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
