Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460050 | XP_024635738.1 | 89.809 | 157 | 6 | 1 | 1 | 147 | 24 | 180 | 1.19e-97 | 288 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460050 | sp|F4KEV7|FHIT_ARATH | 59.333 | 150 | 51 | 1 | 6 | 145 | 28 | 177 | 2.02e-58 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460050 | A0A072UY82 | 87.578 | 161 | 6 | 1 | 1 | 147 | 1 | 161 | 2.37e-97 | 286 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0460050 | Msa0531050 | 0.817343 | 3.463828e-52 | -8.615850e-47 |
| Msa0460050 | Msa0725580 | 0.829943 | 3.878214e-55 | -8.615850e-47 |
| Msa0460050 | Msa1115980 | 0.800455 | 1.429479e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460050 | MtrunA17_Chr3g0108841 | 88.710 | 124 | 14 | 0 | 24 | 147 | 29 | 152 | 8.50e-78 | 227 |
| Msa0460050 | MtrunA17_Chr3g0108711 | 83.621 | 116 | 14 | 2 | 33 | 147 | 38 | 149 | 8.59e-64 | 192 |
| Msa0460050 | MtrunA17_Chr3g0108701 | 74.648 | 71 | 18 | 0 | 77 | 147 | 53 | 123 | 3.16e-25 | 93.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460050 | AT5G58240.2 | 59.333 | 150 | 51 | 1 | 6 | 145 | 8 | 157 | 1.86e-59 | 181 |
| Msa0460050 | AT5G58240.1 | 59.333 | 150 | 51 | 1 | 6 | 145 | 28 | 177 | 2.05e-59 | 182 |
| Msa0460050 | AT5G58240.3 | 63.025 | 119 | 44 | 0 | 27 | 145 | 7 | 125 | 7.02e-50 | 156 |
Find 33 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATAAAGGAACATAGTTATT+TGG | 0.181008 | 3_3:-57037477 | Msa0460050:three_prime_UTR |
| TAGTTGTTTATTTACCTTAA+TGG | 0.217298 | 3_3:+57038854 | None:intergenic |
| GAACATAGTTATTTGGAAAT+TGG | 0.229693 | 3_3:-57037470 | Msa0460050:three_prime_UTR |
| CTCCTCTACTCACTCCATTA+AGG | 0.247889 | 3_3:-57038868 | Msa0460050:intron |
| GCTGTTGAATACTATGATTT+TGG | 0.282921 | 3_3:-57038745 | Msa0460050:CDS |
| CAATGATGACATTTATGATT+TGG | 0.306333 | 3_3:-57037776 | Msa0460050:intron |
| CTTCTAGTGCCATTTCTTCA+AGG | 0.330045 | 3_3:+57037586 | None:intergenic |
| AATTAAAATATTGATAATAA+AGG | 0.340533 | 3_3:-57037492 | Msa0460050:three_prime_UTR |
| ATTGGAAGTTATGTTTCTTA+TGG | 0.343696 | 3_3:-57037452 | Msa0460050:three_prime_UTR |
| TGGATTTAGAGAGGAAAGAT+AGG | 0.366670 | 3_3:-57037611 | Msa0460050:CDS |
| TATGTTTCTTATGGTAGCTT+TGG | 0.380103 | 3_3:-57037443 | Msa0460050:three_prime_UTR |
| AAAAGGAGAAGGAGTTGAAA+AGG | 0.397103 | 3_3:-57037644 | Msa0460050:CDS |
| AGATAGGAGCCTTGAAGAAA+TGG | 0.398545 | 3_3:-57037595 | Msa0460050:CDS |
| ATGTAAGTGATGATGCATTA+TGG | 0.441950 | 3_3:+57038023 | None:intergenic |
| AACATGAGGAACTGATTGTC+CGG | 0.513306 | 3_3:+57037840 | None:intergenic |
| GCAGATAAATGAAAAGGAGA+AGG | 0.524751 | 3_3:-57037655 | Msa0460050:intron |
| AACCTACGTCCTGCTGTCAC+TGG | 0.530201 | 3_3:-57038661 | Msa0460050:intron |
| AATGATGCAGATAAATGAAA+AGG | 0.533909 | 3_3:-57037661 | Msa0460050:intron |
| TTGTTCTTGTATACACATCA+AGG | 0.538035 | 3_3:-57038902 | Msa0460050:five_prime_UTR |
| TTCATATCCATATACTTCCT+CGG | 0.540594 | 3_3:-57037819 | Msa0460050:CDS |
| ATGATGAGAATATTGAGTTA+TGG | 0.557271 | 3_3:-57038084 | Msa0460050:CDS |
| TTGTATGAAAGACTGAACTA+TGG | 0.558673 | 3_3:+57038707 | None:intergenic |
| TACCTTAATGGAGTGAGTAG+AGG | 0.565031 | 3_3:+57038866 | None:intergenic |
| AACCAGGATGGACCTCAAGC+CGG | 0.578461 | 3_3:-57037859 | Msa0460050:intron |
| TGGCGCATAGCACATAAACT+TGG | 0.598736 | 3_3:-57038064 | Msa0460050:CDS |
| GGAACTGATTGTCCGGCTTG+AGG | 0.601527 | 3_3:+57037847 | None:intergenic |
| CAAGACATACCAGTGACAGC+AGG | 0.605749 | 3_3:+57038652 | None:intergenic |
| AGCTAGCTGTGGATTTAGAG+AGG | 0.627680 | 3_3:-57037620 | Msa0460050:CDS |
| AGTATATGGATATGAACATG+AGG | 0.648556 | 3_3:+57037826 | None:intergenic |
| GTTGAAAAGGAAGCTAGCTG+TGG | 0.662335 | 3_3:-57037631 | Msa0460050:CDS |
| AGCAGGACGTAGGTTGACAA+AGG | 0.667098 | 3_3:+57038669 | None:intergenic |
| TATGAAAGACTGAACTATGG+TGG | 0.701492 | 3_3:+57038710 | None:intergenic |
| TACCAGTGACAGCAGGACGT+AGG | 0.754574 | 3_3:+57038659 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTAAGGAATTTTTTAA+AGG | - | chr3_3:57038089-57038108 | Msa0460050:CDS | 10.0% |
| !!! | TATTTAAGGAATTTTTTAAA+GGG | - | chr3_3:57038090-57038109 | Msa0460050:CDS | 10.0% |
| !! | TTAAAAAACAAGTAAAAATT+TGG | - | chr3_3:57038724-57038743 | Msa0460050:CDS | 10.0% |
| !!! | ATATTTAAGGAATTTTTTAA+AGG | - | chr3_3:57038089-57038108 | Msa0460050:CDS | 10.0% |
| !!! | TATTTAAGGAATTTTTTAAA+GGG | - | chr3_3:57038090-57038109 | Msa0460050:CDS | 10.0% |
| !! | TTAAAAAACAAGTAAAAATT+TGG | - | chr3_3:57038724-57038743 | Msa0460050:CDS | 10.0% |
| !! | AAATAGTGTCTAAATATTTA+AGG | - | chr3_3:57038076-57038095 | Msa0460050:CDS | 15.0% |
| !!! | ATTTAAGGAATTTTTTAAAG+GGG | - | chr3_3:57038091-57038110 | Msa0460050:CDS | 15.0% |
| !!! | CATTTGTGTTTTTAATAATT+TGG | - | chr3_3:57038684-57038703 | Msa0460050:CDS | 15.0% |
| !! | AAATAGTGTCTAAATATTTA+AGG | - | chr3_3:57038076-57038095 | Msa0460050:CDS | 15.0% |
| !!! | ATTTAAGGAATTTTTTAAAG+GGG | - | chr3_3:57038091-57038110 | Msa0460050:CDS | 15.0% |
| !!! | CATTTGTGTTTTTAATAATT+TGG | - | chr3_3:57038684-57038703 | Msa0460050:CDS | 15.0% |
| !! | TAGTTGTTTATTTACCTTAA+TGG | + | chr3_3:57037576-57037595 | None:intergenic | 20.0% |
| !!! | AAGTTAACATTTGATGATTA+TGG | + | chr3_3:57037600-57037619 | None:intergenic | 20.0% |
| !! | AGTAACATTAATCTCATATA+TGG | + | chr3_3:57037637-57037656 | None:intergenic | 20.0% |
| !!! | GAGATTAATGTTACTTTTAT+TGG | - | chr3_3:57037642-57037661 | Msa0460050:CDS | 20.0% |
| !!! | ATTAATGTTACTTTTATTGG+AGG | - | chr3_3:57037645-57037664 | Msa0460050:CDS | 20.0% |
| !! | TAATTAACATCAGACTAAAA+AGG | + | chr3_3:57037898-57037917 | None:intergenic | 20.0% |
| !! | TGTATAAAATTGTTCAATTC+TGG | - | chr3_3:57037983-57038002 | Msa0460050:intron | 20.0% |
| !! | ATTAATCTATCTTTACAATC+TGG | - | chr3_3:57038162-57038181 | Msa0460050:intron | 20.0% |
| !!! | TATTTGATTTTGAGCATATA+AGG | - | chr3_3:57038465-57038484 | Msa0460050:intron | 20.0% |
| !! | AATAAAGGAACATAGTTATT+TGG | - | chr3_3:57038950-57038969 | Msa0460050:five_prime_UTR | 20.0% |
| !! | TAGTTGTTTATTTACCTTAA+TGG | + | chr3_3:57037576-57037595 | None:intergenic | 20.0% |
| !!! | AAGTTAACATTTGATGATTA+TGG | + | chr3_3:57037600-57037619 | None:intergenic | 20.0% |
| !! | AGTAACATTAATCTCATATA+TGG | + | chr3_3:57037637-57037656 | None:intergenic | 20.0% |
| !!! | GAGATTAATGTTACTTTTAT+TGG | - | chr3_3:57037642-57037661 | Msa0460050:CDS | 20.0% |
| !!! | ATTAATGTTACTTTTATTGG+AGG | - | chr3_3:57037645-57037664 | Msa0460050:CDS | 20.0% |
| !! | TAATTAACATCAGACTAAAA+AGG | + | chr3_3:57037898-57037917 | None:intergenic | 20.0% |
| !! | TGTATAAAATTGTTCAATTC+TGG | - | chr3_3:57037983-57038002 | Msa0460050:intron | 20.0% |
| !! | ATTAATCTATCTTTACAATC+TGG | - | chr3_3:57038162-57038181 | Msa0460050:intron | 20.0% |
| !!! | TATTTGATTTTGAGCATATA+AGG | - | chr3_3:57038465-57038484 | Msa0460050:intron | 20.0% |
| !! | AATAAAGGAACATAGTTATT+TGG | - | chr3_3:57038950-57038969 | Msa0460050:five_prime_UTR | 20.0% |
| !! | TTACAATTTGCATTTTGCTA+TGG | + | chr3_3:57037489-57037508 | None:intergenic | 25.0% |
| ! | TATTTAAGCTTGAAGATCAT+AGG | + | chr3_3:57037830-57037849 | None:intergenic | 25.0% |
| ! | ATGATGAGAATATTGAGTTA+TGG | - | chr3_3:57038343-57038362 | Msa0460050:intron | 25.0% |
| ! | CAATGATGACATTTATGATT+TGG | - | chr3_3:57038651-57038670 | Msa0460050:intron | 25.0% |
| ! | AATGATGCAGATAAATGAAA+AGG | - | chr3_3:57038766-57038785 | Msa0460050:intron | 25.0% |
| !!! | TTTTATAGTGTCACTTTCAA+AGG | + | chr3_3:57038889-57038908 | None:intergenic | 25.0% |
| ! | GAACATAGTTATTTGGAAAT+TGG | - | chr3_3:57038957-57038976 | Msa0460050:five_prime_UTR | 25.0% |
| ! | ATTGGAAGTTATGTTTCTTA+TGG | - | chr3_3:57038975-57038994 | Msa0460050:five_prime_UTR | 25.0% |
| !! | TTACAATTTGCATTTTGCTA+TGG | + | chr3_3:57037489-57037508 | None:intergenic | 25.0% |
| ! | TATTTAAGCTTGAAGATCAT+AGG | + | chr3_3:57037830-57037849 | None:intergenic | 25.0% |
| ! | ATGATGAGAATATTGAGTTA+TGG | - | chr3_3:57038343-57038362 | Msa0460050:intron | 25.0% |
| ! | CAATGATGACATTTATGATT+TGG | - | chr3_3:57038651-57038670 | Msa0460050:intron | 25.0% |
| ! | AATGATGCAGATAAATGAAA+AGG | - | chr3_3:57038766-57038785 | Msa0460050:intron | 25.0% |
| !!! | TTTTATAGTGTCACTTTCAA+AGG | + | chr3_3:57038889-57038908 | None:intergenic | 25.0% |
| ! | GAACATAGTTATTTGGAAAT+TGG | - | chr3_3:57038957-57038976 | Msa0460050:five_prime_UTR | 25.0% |
| ! | ATTGGAAGTTATGTTTCTTA+TGG | - | chr3_3:57038975-57038994 | Msa0460050:five_prime_UTR | 25.0% |
| TTGTTCTTGTATACACATCA+AGG | - | chr3_3:57037525-57037544 | Msa0460050:three_prime_UTR | 30.0% | |
| ! | ATTGGAGGTGTAAATAAAGA+TGG | - | chr3_3:57037660-57037679 | Msa0460050:intron | 30.0% |
| ! | GCTGTTGAATACTATGATTT+TGG | - | chr3_3:57037682-57037701 | Msa0460050:intron | 30.0% |
| TTGTATGAAAGACTGAACTA+TGG | + | chr3_3:57037723-57037742 | None:intergenic | 30.0% | |
| !!! | TCAATTCTGGTTTTTCATCT+TGG | - | chr3_3:57037996-57038015 | Msa0460050:intron | 30.0% |
| TGGTACGTAGTAATACATAT+CGG | - | chr3_3:57038130-57038149 | Msa0460050:intron | 30.0% | |
| TCAAATTCAGCTTCAAAATC+CGG | + | chr3_3:57038249-57038268 | None:intergenic | 30.0% | |
| ! | ATGTAAGTGATGATGCATTA+TGG | + | chr3_3:57038407-57038426 | None:intergenic | 30.0% |
| CTGGTTCAAAAAGATTGATT+TGG | + | chr3_3:57038554-57038573 | None:intergenic | 30.0% | |
| ! | CAAATCAATCTTTTTGAACC+AGG | - | chr3_3:57038552-57038571 | Msa0460050:intron | 30.0% |
| AGTATATGGATATGAACATG+AGG | + | chr3_3:57038604-57038623 | None:intergenic | 30.0% | |
| TTCATATCCATATACTTCCT+CGG | - | chr3_3:57038608-57038627 | Msa0460050:intron | 30.0% | |
| !! | GATGACATTTATGATTTGGT+AGG | - | chr3_3:57038655-57038674 | Msa0460050:intron | 30.0% |
| !! | ACATTTATGATTTGGTAGGA+TGG | - | chr3_3:57038659-57038678 | Msa0460050:intron | 30.0% |
| TATGTTTCTTATGGTAGCTT+TGG | - | chr3_3:57038984-57039003 | Msa0460050:five_prime_UTR | 30.0% | |
| TTGTTCTTGTATACACATCA+AGG | - | chr3_3:57037525-57037544 | Msa0460050:three_prime_UTR | 30.0% | |
| ! | ATTGGAGGTGTAAATAAAGA+TGG | - | chr3_3:57037660-57037679 | Msa0460050:intron | 30.0% |
| ! | GCTGTTGAATACTATGATTT+TGG | - | chr3_3:57037682-57037701 | Msa0460050:intron | 30.0% |
| TTGTATGAAAGACTGAACTA+TGG | + | chr3_3:57037723-57037742 | None:intergenic | 30.0% | |
| !!! | TCAATTCTGGTTTTTCATCT+TGG | - | chr3_3:57037996-57038015 | Msa0460050:intron | 30.0% |
| TGGTACGTAGTAATACATAT+CGG | - | chr3_3:57038130-57038149 | Msa0460050:intron | 30.0% | |
| TCAAATTCAGCTTCAAAATC+CGG | + | chr3_3:57038249-57038268 | None:intergenic | 30.0% | |
| ! | ATGTAAGTGATGATGCATTA+TGG | + | chr3_3:57038407-57038426 | None:intergenic | 30.0% |
| CTGGTTCAAAAAGATTGATT+TGG | + | chr3_3:57038554-57038573 | None:intergenic | 30.0% | |
| ! | CAAATCAATCTTTTTGAACC+AGG | - | chr3_3:57038552-57038571 | Msa0460050:intron | 30.0% |
| AGTATATGGATATGAACATG+AGG | + | chr3_3:57038604-57038623 | None:intergenic | 30.0% | |
| TTCATATCCATATACTTCCT+CGG | - | chr3_3:57038608-57038627 | Msa0460050:intron | 30.0% | |
| !! | GATGACATTTATGATTTGGT+AGG | - | chr3_3:57038655-57038674 | Msa0460050:intron | 30.0% |
| !! | ACATTTATGATTTGGTAGGA+TGG | - | chr3_3:57038659-57038678 | Msa0460050:intron | 30.0% |
| TATGTTTCTTATGGTAGCTT+TGG | - | chr3_3:57038984-57039003 | Msa0460050:five_prime_UTR | 30.0% | |
| TATGAAAGACTGAACTATGG+TGG | + | chr3_3:57037720-57037739 | None:intergenic | 35.0% | |
| ATAATAGATCAAAGAGGCGA+GGG | + | chr3_3:57037803-57037822 | None:intergenic | 35.0% | |
| AATAATAGATCAAAGAGGCG+AGG | + | chr3_3:57037804-57037823 | None:intergenic | 35.0% | |
| GGAGCAATAATAGATCAAAG+AGG | + | chr3_3:57037809-57037828 | None:intergenic | 35.0% | |
| ! | CTTTCCTTTTTATCTTTCGC+AGG | - | chr3_3:57037866-57037885 | Msa0460050:intron | 35.0% |
| ATGACCTGCGAAAGATAAAA+AGG | + | chr3_3:57037873-57037892 | None:intergenic | 35.0% | |
| GGGGTTTAGATTTAGAGATA+TGG | - | chr3_3:57038110-57038129 | Msa0460050:CDS | 35.0% | |
| GGTACGTAGTAATACATATC+GGG | - | chr3_3:57038131-57038150 | Msa0460050:intron | 35.0% | |
| TCTTTACAATCTGGTAAGTG+TGG | - | chr3_3:57038171-57038190 | Msa0460050:intron | 35.0% | |
| CTTTACAATCTGGTAAGTGT+GGG | - | chr3_3:57038172-57038191 | Msa0460050:intron | 35.0% | |
| !! | CTATTTGAGTTGTACTTACG+AGG | + | chr3_3:57038198-57038217 | None:intergenic | 35.0% |
| ACAACAACATTTGATATGCC+CGG | - | chr3_3:57038227-57038246 | Msa0460050:intron | 35.0% | |
| CAAATTCAGCTTCAAAATCC+GGG | + | chr3_3:57038248-57038267 | None:intergenic | 35.0% | |
| TGTATCCAAGTAAGACAGTT+TGG | - | chr3_3:57038429-57038448 | Msa0460050:intron | 35.0% | |
| TTTCTCCAAACTGTCTTACT+TGG | + | chr3_3:57038437-57038456 | None:intergenic | 35.0% | |
| ATTGTATAGCCACATAGCAT+TGG | + | chr3_3:57038519-57038538 | None:intergenic | 35.0% | |
| ! | TCAATCTTTTTGAACCAGGA+TGG | - | chr3_3:57038556-57038575 | Msa0460050:intron | 35.0% |
| CATATACTTCCTCGGAAAAA+CGG | - | chr3_3:57038616-57038635 | Msa0460050:intron | 35.0% | |
| GCAGATAAATGAAAAGGAGA+AGG | - | chr3_3:57038772-57038791 | Msa0460050:intron | 35.0% | |
| AAAAGGAGAAGGAGTTGAAA+AGG | - | chr3_3:57038783-57038802 | Msa0460050:intron | 35.0% | |
| TGGATTTAGAGAGGAAAGAT+AGG | - | chr3_3:57038816-57038835 | Msa0460050:intron | 35.0% | |
| TATGAAAGACTGAACTATGG+TGG | + | chr3_3:57037720-57037739 | None:intergenic | 35.0% | |
| ATAATAGATCAAAGAGGCGA+GGG | + | chr3_3:57037803-57037822 | None:intergenic | 35.0% | |
| AATAATAGATCAAAGAGGCG+AGG | + | chr3_3:57037804-57037823 | None:intergenic | 35.0% | |
| GGAGCAATAATAGATCAAAG+AGG | + | chr3_3:57037809-57037828 | None:intergenic | 35.0% | |
| ! | CTTTCCTTTTTATCTTTCGC+AGG | - | chr3_3:57037866-57037885 | Msa0460050:intron | 35.0% |
| ATGACCTGCGAAAGATAAAA+AGG | + | chr3_3:57037873-57037892 | None:intergenic | 35.0% | |
| GGGGTTTAGATTTAGAGATA+TGG | - | chr3_3:57038110-57038129 | Msa0460050:CDS | 35.0% | |
| GGTACGTAGTAATACATATC+GGG | - | chr3_3:57038131-57038150 | Msa0460050:intron | 35.0% | |
| TCTTTACAATCTGGTAAGTG+TGG | - | chr3_3:57038171-57038190 | Msa0460050:intron | 35.0% | |
| CTTTACAATCTGGTAAGTGT+GGG | - | chr3_3:57038172-57038191 | Msa0460050:intron | 35.0% | |
| !! | CTATTTGAGTTGTACTTACG+AGG | + | chr3_3:57038198-57038217 | None:intergenic | 35.0% |
| ACAACAACATTTGATATGCC+CGG | - | chr3_3:57038227-57038246 | Msa0460050:intron | 35.0% | |
| CAAATTCAGCTTCAAAATCC+GGG | + | chr3_3:57038248-57038267 | None:intergenic | 35.0% | |
| TGTATCCAAGTAAGACAGTT+TGG | - | chr3_3:57038429-57038448 | Msa0460050:intron | 35.0% | |
| TTTCTCCAAACTGTCTTACT+TGG | + | chr3_3:57038437-57038456 | None:intergenic | 35.0% | |
| ATTGTATAGCCACATAGCAT+TGG | + | chr3_3:57038519-57038538 | None:intergenic | 35.0% | |
| ! | TCAATCTTTTTGAACCAGGA+TGG | - | chr3_3:57038556-57038575 | Msa0460050:intron | 35.0% |
| CATATACTTCCTCGGAAAAA+CGG | - | chr3_3:57038616-57038635 | Msa0460050:intron | 35.0% | |
| GCAGATAAATGAAAAGGAGA+AGG | - | chr3_3:57038772-57038791 | Msa0460050:intron | 35.0% | |
| AAAAGGAGAAGGAGTTGAAA+AGG | - | chr3_3:57038783-57038802 | Msa0460050:intron | 35.0% | |
| TGGATTTAGAGAGGAAAGAT+AGG | - | chr3_3:57038816-57038835 | Msa0460050:intron | 35.0% | |
| TACCTTAATGGAGTGAGTAG+AGG | + | chr3_3:57037564-57037583 | None:intergenic | 40.0% | |
| ACGTAGTAATACATATCGGG+TGG | - | chr3_3:57038134-57038153 | Msa0460050:intron | 40.0% | |
| CGTAGTAATACATATCGGGT+GGG | - | chr3_3:57038135-57038154 | Msa0460050:intron | 40.0% | |
| AACATGAGGAACTGATTGTC+CGG | + | chr3_3:57038590-57038609 | None:intergenic | 40.0% | |
| !! | CGTTTTTCCGAGGAAGTATA+TGG | + | chr3_3:57038618-57038637 | None:intergenic | 40.0% |
| AGATAGGAGCCTTGAAGAAA+TGG | - | chr3_3:57038832-57038851 | Msa0460050:intron | 40.0% | |
| !! | CTTCTAGTGCCATTTCTTCA+AGG | + | chr3_3:57038844-57038863 | None:intergenic | 40.0% |
| TACCTTAATGGAGTGAGTAG+AGG | + | chr3_3:57037564-57037583 | None:intergenic | 40.0% | |
| ACGTAGTAATACATATCGGG+TGG | - | chr3_3:57038134-57038153 | Msa0460050:intron | 40.0% | |
| CGTAGTAATACATATCGGGT+GGG | - | chr3_3:57038135-57038154 | Msa0460050:intron | 40.0% | |
| AACATGAGGAACTGATTGTC+CGG | + | chr3_3:57038590-57038609 | None:intergenic | 40.0% | |
| !! | CGTTTTTCCGAGGAAGTATA+TGG | + | chr3_3:57038618-57038637 | None:intergenic | 40.0% |
| AGATAGGAGCCTTGAAGAAA+TGG | - | chr3_3:57038832-57038851 | Msa0460050:intron | 40.0% | |
| !! | CTTCTAGTGCCATTTCTTCA+AGG | + | chr3_3:57038844-57038863 | None:intergenic | 40.0% |
| CTCCTCTACTCACTCCATTA+AGG | - | chr3_3:57037559-57037578 | Msa0460050:CDS | 45.0% | |
| TGGCGCATAGCACATAAACT+TGG | - | chr3_3:57038363-57038382 | Msa0460050:intron | 45.0% | |
| TGCCTAAGACCAATGCTATG+TGG | - | chr3_3:57038507-57038526 | Msa0460050:intron | 45.0% | |
| !! | AGCCACATAGCATTGGTCTT+AGG | + | chr3_3:57038512-57038531 | None:intergenic | 45.0% |
| !! | TCGAAATCACCGTTTTTCCG+AGG | + | chr3_3:57038628-57038647 | None:intergenic | 45.0% |
| GTTGAAAAGGAAGCTAGCTG+TGG | - | chr3_3:57038796-57038815 | Msa0460050:intron | 45.0% | |
| AGCTAGCTGTGGATTTAGAG+AGG | - | chr3_3:57038807-57038826 | Msa0460050:intron | 45.0% | |
| CTCCTCTACTCACTCCATTA+AGG | - | chr3_3:57037559-57037578 | Msa0460050:CDS | 45.0% | |
| TGGCGCATAGCACATAAACT+TGG | - | chr3_3:57038363-57038382 | Msa0460050:intron | 45.0% | |
| TGCCTAAGACCAATGCTATG+TGG | - | chr3_3:57038507-57038526 | Msa0460050:intron | 45.0% | |
| !! | AGCCACATAGCATTGGTCTT+AGG | + | chr3_3:57038512-57038531 | None:intergenic | 45.0% |
| !! | TCGAAATCACCGTTTTTCCG+AGG | + | chr3_3:57038628-57038647 | None:intergenic | 45.0% |
| GTTGAAAAGGAAGCTAGCTG+TGG | - | chr3_3:57038796-57038815 | Msa0460050:intron | 45.0% | |
| AGCTAGCTGTGGATTTAGAG+AGG | - | chr3_3:57038807-57038826 | Msa0460050:intron | 45.0% | |
| !! | TGTTAATTAAAAAAAAAAAT+TGG | - | chr3_3:57037909-57037928 | Msa0460050:intron | 5.0% |
| !!! | AATTAAAATATTGATAATAA+AGG | - | chr3_3:57038935-57038954 | Msa0460050:five_prime_UTR | 5.0% |
| !! | TGTTAATTAAAAAAAAAAAT+TGG | - | chr3_3:57037909-57037928 | Msa0460050:intron | 5.0% |
| !!! | AATTAAAATATTGATAATAA+AGG | - | chr3_3:57038935-57038954 | Msa0460050:five_prime_UTR | 5.0% |
| ! | AGCAGGACGTAGGTTGACAA+AGG | + | chr3_3:57037761-57037780 | None:intergenic | 50.0% |
| CAAGACATACCAGTGACAGC+AGG | + | chr3_3:57037778-57037797 | None:intergenic | 50.0% | |
| ! | AGCAGGACGTAGGTTGACAA+AGG | + | chr3_3:57037761-57037780 | None:intergenic | 50.0% |
| CAAGACATACCAGTGACAGC+AGG | + | chr3_3:57037778-57037797 | None:intergenic | 50.0% | |
| AACCTACGTCCTGCTGTCAC+TGG | - | chr3_3:57037766-57037785 | Msa0460050:intron | 55.0% | |
| TACCAGTGACAGCAGGACGT+AGG | + | chr3_3:57037771-57037790 | None:intergenic | 55.0% | |
| ACACGCTTCACTTCGCGCTT+CGG | + | chr3_3:57038309-57038328 | None:intergenic | 55.0% | |
| AACCAGGATGGACCTCAAGC+CGG | - | chr3_3:57038568-57038587 | Msa0460050:intron | 55.0% | |
| ! | GGAACTGATTGTCCGGCTTG+AGG | + | chr3_3:57038583-57038602 | None:intergenic | 55.0% |
| AACCTACGTCCTGCTGTCAC+TGG | - | chr3_3:57037766-57037785 | Msa0460050:intron | 55.0% | |
| TACCAGTGACAGCAGGACGT+AGG | + | chr3_3:57037771-57037790 | None:intergenic | 55.0% | |
| ACACGCTTCACTTCGCGCTT+CGG | + | chr3_3:57038309-57038328 | None:intergenic | 55.0% | |
| AACCAGGATGGACCTCAAGC+CGG | - | chr3_3:57038568-57038587 | Msa0460050:intron | 55.0% | |
| ! | GGAACTGATTGTCCGGCTTG+AGG | + | chr3_3:57038583-57038602 | None:intergenic | 55.0% |
| ! | GTCCGGCTTGAGGTCCATCC+TGG | + | chr3_3:57038573-57038592 | None:intergenic | 65.0% |
| ! | GTCCGGCTTGAGGTCCATCC+TGG | + | chr3_3:57038573-57038592 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 57037418 | 57039031 | 57037418 | ID=Msa0460050;Name=Msa0460050 |
| chr3_3 | mRNA | 57037418 | 57039031 | 57037418 | ID=Msa0460050-mRNA-1;Parent=Msa0460050;Name=Msa0460050-mRNA-1;_AED=0.09;_eAED=0.09;_QI=163|0.75|0.8|1|0.75|0.8|5|139|147 |
| chr3_3 | exon | 57037418 | 57037673 | 57037418 | ID=Msa0460050-mRNA-1:exon:11553;Parent=Msa0460050-mRNA-1 |
| chr3_3 | exon | 57037777 | 57037875 | 57037777 | ID=Msa0460050-mRNA-1:exon:11552;Parent=Msa0460050-mRNA-1 |
| chr3_3 | exon | 57038012 | 57038130 | 57038012 | ID=Msa0460050-mRNA-1:exon:11551;Parent=Msa0460050-mRNA-1 |
| chr3_3 | exon | 57038662 | 57038770 | 57038662 | ID=Msa0460050-mRNA-1:exon:11550;Parent=Msa0460050-mRNA-1 |
| chr3_3 | exon | 57038869 | 57039031 | 57038869 | ID=Msa0460050-mRNA-1:exon:11549;Parent=Msa0460050-mRNA-1 |
| chr3_3 | five_prime_UTR | 57038869 | 57039031 | 57038869 | ID=Msa0460050-mRNA-1:five_prime_utr;Parent=Msa0460050-mRNA-1 |
| chr3_3 | CDS | 57038662 | 57038770 | 57038662 | ID=Msa0460050-mRNA-1:cds;Parent=Msa0460050-mRNA-1 |
| chr3_3 | CDS | 57038012 | 57038130 | 57038012 | ID=Msa0460050-mRNA-1:cds;Parent=Msa0460050-mRNA-1 |
| chr3_3 | CDS | 57037777 | 57037875 | 57037777 | ID=Msa0460050-mRNA-1:cds;Parent=Msa0460050-mRNA-1 |
| chr3_3 | CDS | 57037557 | 57037673 | 57037557 | ID=Msa0460050-mRNA-1:cds;Parent=Msa0460050-mRNA-1 |
| chr3_3 | three_prime_UTR | 57037418 | 57037556 | 57037418 | ID=Msa0460050-mRNA-1:three_prime_utr;Parent=Msa0460050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
