AlfalfaGEDB | Msa1115980

M. sativa cultivar zhongmu-4 / Msa1115980

KEGG: K14431
GO: GO:0000003 GO:0002237 GO:0003006 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009791 GO:0009889 GO:0009908 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046983 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048608 GO:0048653 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051704 GO:0051707 GO:0051716 GO:0060255 GO:0061458 GO:0065007 GO:0071588 GO:0080090 GO:0090567 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF00170.24

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115980	XP_013449639.2	96.375	469	4	4	1	460	1	465	0.0	923

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115980	sp\|Q52MZ2\|TGA10_TOBAC	69.977	443	97	10	48	460	70	506	0.0	610

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115980	A2Q4V1	94.167	480	4	4	1	460	1	476	0.0	918

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1115980	TF	bZIP

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa1115980	0.838205	3.303032e-57	-8.615850e-47
Msa0002110	Msa1115980	-0.816589	5.116883e-52	-8.615850e-47
Msa0002690	Msa1115980	-0.822553	2.227326e-53	-8.615850e-47
Msa0002700	Msa1115980	-0.820454	6.799786e-53	-8.615850e-47
Msa0004180	Msa1115980	-0.852874	3.466640e-61	-8.615850e-47
Msa0004940	Msa1115980	0.834312	3.223316e-56	-8.615850e-47
Msa0004990	Msa1115980	0.806765	7.018264e-50	-8.615850e-47
Msa0006480	Msa1115980	0.819904	9.090805e-53	-8.615850e-47
Msa0007810	Msa1115980	-0.813499	2.482147e-51	-8.615850e-47
Msa0010150	Msa1115980	0.825829	3.786245e-54	-8.615850e-47

Showing 1 to 10 of 1,645 entries

Previous1 2 3 4 5…165Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115980	MtrunA17_Chr7g0258321	96.162	469	4	5	1	460	1	464	0.0	916
Msa1115980	MtrunA17_Chr1g0174701	72.912	443	90	9	47	460	66	507	0.0	625
Msa1115980	MtrunA17_Chr8g0353501	51.813	386	154	10	87	458	98	465	2.19e-122	364
Msa1115980	MtrunA17_Chr7g0256211	60.131	306	103	7	164	459	156	452	5.57e-122	363
Msa1115980	MtrunA17_Chr2g0321431	55.593	295	111	4	171	459	189	469	1.43e-110	335
Msa1115980	MtrunA17_Chr4g0026401	53.746	307	115	6	159	459	176	461	1.16e-104	320
Msa1115980	MtrunA17_Chr5g0422771	50.809	309	136	5	160	459	163	464	4.34e-100	307
Msa1115980	MtrunA17_Chr3g0124601	49.057	318	149	4	148	459	51	361	5.06e-98	298
Msa1115980	MtrunA17_Chr1g0210151	48.598	321	147	6	146	459	31	340	7.98e-96	292
Msa1115980	MtrunA17_Chr8g0382861	44.918	305	156	3	160	459	59	356	5.25e-83	259

Showing 1 to 10 of 17 entries

Previous1 2Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1115980	AT5G06839.3	59.050	442	133	13	63	460	22	459	2.28e-168	482
Msa1115980	AT5G06839.1	59.716	422	119	12	63	460	22	416	8.47e-166	474
Msa1115980	AT5G06839.2	59.338	423	120	12	63	460	22	417	5.92e-165	471
Msa1115980	AT1G08320.2	53.448	348	128	10	118	459	10	329	3.32e-118	350
Msa1115980	AT1G08320.5	53.448	348	128	10	118	459	10	329	3.32e-118	350
Msa1115980	AT1G08320.1	52.874	348	130	9	118	459	134	453	5.87e-116	349
Msa1115980	AT1G08320.4	52.874	348	130	9	118	459	134	453	5.87e-116	349
Msa1115980	AT1G08320.3	52.874	348	130	9	118	459	134	453	5.87e-116	349
Msa1115980	AT5G06950.2	53.094	307	129	4	161	459	31	330	1.61e-108	325
Msa1115980	AT5G06950.4	53.094	307	129	4	161	459	31	330	1.61e-108	325

Showing 1 to 10 of 39 entries

Previous1 2 3 4Next

Find 99 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTCAACATCAGGAATG+AGG	0.564641	7_3:-63507548	Msa1115980:CDS
AAAGAGTTAACCTTAGGATC+TGG	0.468362	7_3:+63506791	None:intergenic
AACATTCTAAGCTCATTCTC+AGG	0.491670	7_3:+63506018	None:intergenic
AACTCAATGCTCGCATACGA+TGG	0.565611	7_3:+63502274	None:intergenic
AAGAGTGGAGAGTTTGTTCA+TGG	0.395292	7_3:+63504803	None:intergenic
AATGTTTGTGGACAAATTCT+TGG	0.284617	7_3:-63506001	Msa1115980:CDS
ACATGAAGCAACGTTCAATT+GGG	0.406516	7_3:+63505896	None:intergenic
ACCTAAAACACCAGATCCTA+AGG	0.513193	7_3:-63506801	Msa1115980:intron
ACCTTAGAATTGGACGATGA+TGG	0.485367	7_3:+63507480	None:intergenic
ACGATGGAAGTACTCAGCCA+TGG	0.660105	7_3:+63502290	None:intergenic

Showing 1 to 10 of 99 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TGTCAGCAGAAATAAAGATT+CGG	-	chr7_3:63502658-63502677	Msa1115980:intron	30.0%
GTCCATTAAGATAGAGAAAA+AGG	+	chr7_3:63502715-63502734	None:intergenic	30.0%
AAAATTCAACATCAGGAATG+AGG	-	chr7_3:63503385-63503404	Msa1115980:intron	30.0%
CTATAGTATAGTAAACGCAT+AGG	+	chr7_3:63504059-63504078	None:intergenic	30.0%
CAGAATCAAACTTAATCAGA+TGG	-	chr7_3:63504540-63504559	Msa1115980:intron	30.0%
GTAACCTAAAATGCAATAAC+CGG	-	chr7_3:63504617-63504636	Msa1115980:intron	30.0%
ACAATAAATCATGACATGTC+CGG	+	chr7_3:63504639-63504658	None:intergenic	30.0%
CTCTTAGTTCACATACTAAA+CGG	+	chr7_3:63504875-63504894	None:intergenic	30.0%
AATGTTTGTGGACAAATTCT+TGG	-	chr7_3:63504932-63504951	Msa1115980:CDS	30.0%
ATAAACTTAGTATTGTCGGT+GGG	-	chr7_3:63505343-63505362	Msa1115980:intron	30.0%

Showing 1 to 10 of 352 entries

Previous1 2 3 4 5…36Next

Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	63502242	63508713	63502242	ID=Msa1115980;Name=Msa1115980
chr7_3	mRNA	63502242	63508713	63502242	ID=Msa1115980-mRNA-1;Parent=Msa1115980;Name=Msa1115980-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0\|0.09\|0\|1\|0.72\|0.58\|12\|0\|460
chr7_3	exon	63508517	63508713	63508517	ID=Msa1115980-mRNA-1:exon:14940;Parent=Msa1115980-mRNA-1
chr7_3	exon	63508188	63508291	63508188	ID=Msa1115980-mRNA-1:exon:14939;Parent=Msa1115980-mRNA-1
chr7_3	exon	63507482	63507570	63507482	ID=Msa1115980-mRNA-1:exon:14938;Parent=Msa1115980-mRNA-1
chr7_3	exon	63507316	63507381	63507316	ID=Msa1115980-mRNA-1:exon:14937;Parent=Msa1115980-mRNA-1
chr7_3	exon	63506802	63506873	63506802	ID=Msa1115980-mRNA-1:exon:14936;Parent=Msa1115980-mRNA-1
chr7_3	exon	63506565	63506624	63506565	ID=Msa1115980-mRNA-1:exon:14935;Parent=Msa1115980-mRNA-1
chr7_3	exon	63506367	63506441	63506367	ID=Msa1115980-mRNA-1:exon:14934;Parent=Msa1115980-mRNA-1
chr7_3	exon	63506210	63506282	63506210	ID=Msa1115980-mRNA-1:exon:14933;Parent=Msa1115980-mRNA-1
chr7_3	exon	63505987	63506132	63505987	ID=Msa1115980-mRNA-1:exon:14932;Parent=Msa1115980-mRNA-1
chr7_3	exon	63505861	63505971	63505861	ID=Msa1115980-mRNA-1:exon:14931;Parent=Msa1115980-mRNA-1
chr7_3	exon	63504785	63505024	63504785	ID=Msa1115980-mRNA-1:exon:14930;Parent=Msa1115980-mRNA-1
chr7_3	exon	63502242	63502391	63502242	ID=Msa1115980-mRNA-1:exon:14929;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63508517	63508713	63508517	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63508188	63508291	63508188	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63507482	63507570	63507482	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63507316	63507381	63507316	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63506802	63506873	63506802	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63506565	63506624	63506565	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63506367	63506441	63506367	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63506210	63506282	63506210	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63505987	63506132	63505987	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63505861	63505971	63505861	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63504785	63505024	63504785	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1
chr7_3	CDS	63502242	63502391	63502242	ID=Msa1115980-mRNA-1:cds;Parent=Msa1115980-mRNA-1

Gene Sequence

>Msa1115980

ATGGCTTCCAGTGTTGAAAAACCAAACCAAACCACTACTCAACTAGAACCACTCCCACCACCTCAACACCGTCATCATCAAATTCATCATCAACAACATAAACCACAACATCATCATCATCCAATACATGATCATAATCAAATTTCTTTTGGAATGATGCAATCTTCTTCATCACCCTCTGTCCTTGGAAACTACATCAGAAATAAAGATTCGGGAGCTTATGATTTGGGTGAATTGGATCAAGCCCTTTTTCTCTATCTTAATGGACAAACTGACCCATCCAGTGTTCAAGACCAAAAACAAAATTCAACATCAGGAATGAGGCCACCAACTCTCAACATTTTTCCTTCTCAGCCTATGCATGTAGAGCCATCATCGTCCAATTCTAAGGCTAGCATGGAGTTAGTTTCTCCGCAAACAAGTGGATCCAAGAGAGGATCAGAGCCACCCAAAGCTCGAGAGAAAAATCATGGCAAGGGTCCAACTTCAAGTTCTGAACATGAAGGACCTAAAACACCAGATCCTAAGATACTGAGAAGACTTGCTCAGAATAGAGAAGCAGCTAGAAAAAGCAGGCTTAGGAAAAAGGCATATATACAACAGCTTGAGTCAAGCAGAATCAAACTTAATCAGATGGAACAGGAGCTACATGCTAGAAATCAAGGCATGTTCTTTGGTGGAGGTGCAATGTTGGGAGGAGAACAAGGCCTTCCTTCTATGAATACCATCAGCTCAGAGGCTGCAATGTTCGACGTGGAATATGCAAGGTGGCTTGAGGAGCACCACCGTTTAGTATGTGAACTAAGAGCTGCAGTTCATGAGCACATTCCTGAGAATGAGCTTAGAATGTTTGTGGACAAATTCTTGGCTCAATATGATCAAAGCTTAGTTGCAAAAGCAGATATATTTCATCTTGTTTCTGGCATGTGGGTTACCCCAATTGAACGTTGCTTCATGTGGATTGGTGGATTTAAGCCTTCTGAACTCATTAAGATCATTGTGAGTCAAATTGAACCATTGACCGAGCAACAAATAATGGGCATATATGGATTGCAACAATCTACACAACAGGGAGAAGATGCTCTCTCTCAAGGACTTGAGGCTCTCAATCAAAATCTTTCTGAAACTATAACATCAGATTCATTGAGCTATCCTCCCAATATGACCAACTACATGGACCAAATGGCAAGGGCCATGAACAAACTCTCCACTCTTGAAAGTTTCGTGAGAGAGGCAGATAATCTACGACACCAAACCATTCATCGTCTGAATCAGATCCTAACGACGCGTCAAGCAGCAAGGTGTTTTCTTGCCATGGCTGAGTACTTCCATCGTATGCGAGCATTGAGTTCTCTGTGGATGGCACGCCCTCGTCAAGAATAG

Protein sequence

>Msa1115980

MASSVEKPNQTTTQLEPLPPPQHRHHQIHHQQHKPQHHHHPIHDHNQISFGMMQSSSSPSVLGNYIRNKDSGAYDLGELDQALFLYLNGQTDPSSVQDQKQNSTSGMRPPTLNIFPSQPMHVEPSSSNSKASMELVSPQTSGSKRGSEPPKAREKNHGKGPTSSSEHEGPKTPDPKILRRLAQNREAARKSRLRKKAYIQQLESSRIKLNQMEQELHARNQGMFFGGGAMLGGEQGLPSMNTISSEAAMFDVEYARWLEEHHRLVCELRAAVHEHIPENELRMFVDKFLAQYDQSLVAKADIFHLVSGMWVTPIERCFMWIGGFKPSELIKIIVSQIEPLTEQQIMGIYGLQQSTQQGEDALSQGLEALNQNLSETITSDSLSYPPNMTNYMDQMARAMNKLSTLESFVREADNLRHQTIHRLNQILTTRQAARCFLAMAEYFHRMRALSSLWMARPRQE*