Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0460240 | RHN67914.1 | 65.533 | 676 | 138 | 11 | 1 | 604 | 1235 | 1887 | 0.0 | 812 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0460240 | A0A396IU65 | 65.533 | 676 | 138 | 11 | 1 | 604 | 1235 | 1887 | 0.0 | 812 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0367610 | Msa0460240 | 0.800008 | 1.762765e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0460240 | MtrunA17_Chr3g0107931 | 65.533 | 676 | 138 | 11 | 1 | 604 | 1235 | 1887 | 0.0 | 812 |
Msa0460240 | MtrunA17_Chr3g0091861 | 56.768 | 724 | 168 | 12 | 1 | 595 | 1157 | 1864 | 0.0 | 714 |
Msa0460240 | MtrunA17_Chr3g0108821 | 61.404 | 627 | 189 | 12 | 1 | 604 | 1206 | 1802 | 0.0 | 678 |
Msa0460240 | MtrunA17_Chr3g0108151 | 57.213 | 610 | 205 | 11 | 3 | 604 | 982 | 1543 | 0.0 | 592 |
Msa0460240 | MtrunA17_Chr3g0108811 | 57.549 | 563 | 186 | 10 | 62 | 604 | 1401 | 1930 | 0.0 | 568 |
Msa0460240 | MtrunA17_Chr3g0108811 | 56.621 | 219 | 82 | 4 | 1 | 213 | 1227 | 1438 | 4.10e-63 | 226 |
Msa0460240 | MtrunA17_Chr3g0108071 | 53.701 | 635 | 199 | 14 | 3 | 574 | 359 | 961 | 0.0 | 558 |
Msa0460240 | MtrunA17_Chr3g0108171 | 78.771 | 358 | 54 | 1 | 269 | 604 | 1610 | 1967 | 7.34e-176 | 546 |
Msa0460240 | MtrunA17_Chr3g0108171 | 50.000 | 562 | 151 | 12 | 3 | 448 | 1079 | 1626 | 2.78e-145 | 462 |
Msa0460240 | MtrunA17_Chr3g0105521 | 49.351 | 616 | 244 | 12 | 24 | 604 | 1023 | 1605 | 1.62e-157 | 491 |
Msa0460240 | MtrunA17_Chr3g0105521 | 27.919 | 197 | 126 | 5 | 4 | 191 | 638 | 827 | 5.01e-11 | 66.2 |
Msa0460240 | MtrunA17_Chr3g0108111 | 54.000 | 450 | 137 | 9 | 3 | 388 | 160 | 603 | 1.22e-139 | 419 |
Msa0460240 | MtrunA17_Chr3g0108091 | 50.289 | 519 | 172 | 12 | 119 | 574 | 3 | 498 | 7.63e-138 | 411 |
Msa0460240 | MtrunA17_Chr3g0108091 | 40.669 | 359 | 121 | 11 | 84 | 424 | 5 | 289 | 2.03e-57 | 201 |
Msa0460240 | MtrunA17_Chr3g0108011 | 67.341 | 346 | 76 | 6 | 1 | 329 | 1244 | 1569 | 7.98e-133 | 426 |
Msa0460240 | MtrunA17_Chr3g0097011 | 67.719 | 285 | 71 | 3 | 320 | 604 | 134 | 397 | 2.26e-120 | 362 |
Msa0460240 | MtrunA17_Chr3g0107261 | 62.838 | 296 | 102 | 2 | 316 | 604 | 105 | 399 | 4.41e-117 | 353 |
Msa0460240 | MtrunA17_Chr3g0091851 | 42.703 | 555 | 234 | 12 | 62 | 604 | 833 | 1315 | 1.83e-105 | 346 |
Msa0460240 | MtrunA17_Chr3g0107271 | 69.099 | 233 | 64 | 4 | 1 | 229 | 13 | 241 | 7.83e-104 | 314 |
Msa0460240 | MtrunA17_Chr3g0087641 | 76.500 | 200 | 47 | 0 | 349 | 548 | 148 | 347 | 1.18e-100 | 310 |
Msa0460240 | MtrunA17_Chr2g0304131 | 60.000 | 270 | 96 | 2 | 347 | 604 | 46 | 315 | 2.06e-98 | 302 |
Msa0460240 | MtrunA17_Chr3g0105471 | 64.113 | 248 | 75 | 4 | 362 | 604 | 8 | 246 | 2.30e-94 | 290 |
Msa0460240 | MtrunA17_Chr3g0105591 | 43.973 | 448 | 151 | 13 | 230 | 604 | 15 | 435 | 1.16e-89 | 284 |
Msa0460240 | MtrunA17_Chr3g0107641 | 74.211 | 190 | 48 | 1 | 415 | 604 | 4 | 192 | 5.86e-88 | 271 |
Msa0460240 | MtrunA17_Chr3g0108761 | 70.312 | 192 | 43 | 1 | 413 | 604 | 3 | 180 | 1.70e-85 | 264 |
Msa0460240 | MtrunA17_Chr3g0097601 | 62.100 | 219 | 81 | 2 | 1 | 218 | 14 | 231 | 1.03e-82 | 260 |
Msa0460240 | MtrunA17_Chr3g0105551 | 47.906 | 382 | 114 | 9 | 299 | 604 | 1492 | 1864 | 1.77e-80 | 277 |
Msa0460240 | MtrunA17_Chr3g0105551 | 61.194 | 201 | 68 | 2 | 24 | 217 | 1141 | 1338 | 1.84e-66 | 236 |
Msa0460240 | MtrunA17_Chr3g0105551 | 28.426 | 197 | 125 | 5 | 4 | 191 | 756 | 945 | 4.72e-12 | 69.7 |
Msa0460240 | MtrunA17_Chr3g0096701 | 44.591 | 379 | 167 | 13 | 59 | 412 | 39 | 399 | 5.00e-75 | 254 |
Msa0460240 | MtrunA17_Chr3g0105601 | 59.070 | 215 | 76 | 3 | 24 | 231 | 261 | 470 | 1.32e-70 | 236 |
Msa0460240 | MtrunA17_Chr3g0105481 | 41.624 | 394 | 178 | 10 | 24 | 391 | 1055 | 1422 | 1.37e-69 | 245 |
Msa0460240 | MtrunA17_Chr3g0105481 | 29.630 | 189 | 124 | 5 | 4 | 191 | 707 | 887 | 3.83e-11 | 66.6 |
Msa0460240 | MtrunA17_Chr3g0096771 | 50.558 | 269 | 94 | 5 | 348 | 604 | 48 | 289 | 6.62e-67 | 219 |
Msa0460240 | MtrunA17_Chr3g0105501 | 57.921 | 202 | 73 | 4 | 31 | 230 | 1 | 192 | 2.18e-66 | 216 |
Msa0460240 | MtrunA17_Chr3g0107171 | 67.683 | 164 | 46 | 2 | 443 | 604 | 225 | 383 | 5.30e-64 | 215 |
Msa0460240 | MtrunA17_Chr3g0107081 | 59.551 | 178 | 60 | 3 | 54 | 231 | 29 | 194 | 9.01e-61 | 201 |
Msa0460240 | MtrunA17_Chr7g0223911 | 66.667 | 138 | 39 | 1 | 467 | 604 | 30 | 160 | 2.34e-54 | 182 |
Msa0460240 | MtrunA17_Chr2g0288311 | 61.146 | 157 | 33 | 3 | 71 | 226 | 30 | 159 | 1.28e-48 | 167 |
Msa0460240 | MtrunA17_Chr7g0229711 | 55.696 | 158 | 47 | 3 | 435 | 592 | 5 | 139 | 4.52e-44 | 154 |
Msa0460240 | MtrunA17_Chr1g0160951 | 35.897 | 273 | 160 | 4 | 1 | 258 | 1005 | 1277 | 3.40e-42 | 164 |
Msa0460240 | MtrunA17_Chr3g0112521 | 81.690 | 71 | 13 | 0 | 519 | 589 | 6 | 76 | 3.81e-33 | 121 |
Msa0460240 | MtrunA17_Chr3g0107201 | 35.821 | 268 | 139 | 8 | 136 | 376 | 2 | 263 | 6.06e-33 | 134 |
Msa0460240 | MtrunA17_Chr3g0109131 | 82.895 | 76 | 13 | 0 | 529 | 604 | 97 | 172 | 6.09e-33 | 124 |
Msa0460240 | MtrunA17_Chr3g0096801 | 49.640 | 139 | 56 | 3 | 136 | 272 | 2 | 128 | 6.13e-32 | 120 |
Msa0460240 | MtrunA17_Chr5g0439121 | 31.195 | 343 | 196 | 12 | 7 | 331 | 1294 | 1614 | 1.50e-31 | 131 |
Msa0460240 | MtrunA17_Chr5g0439121 | 31.609 | 174 | 107 | 4 | 7 | 174 | 975 | 1142 | 2.68e-13 | 73.6 |
Msa0460240 | MtrunA17_Chr5g0439121 | 25.926 | 270 | 177 | 7 | 56 | 310 | 779 | 1040 | 2.95e-12 | 70.1 |
Msa0460240 | MtrunA17_Chr3g0100241 | 40.127 | 157 | 85 | 3 | 53 | 203 | 37 | 190 | 4.59e-27 | 109 |
Msa0460240 | MtrunA17_Chr3g0100261 | 37.968 | 187 | 100 | 5 | 29 | 203 | 1026 | 1208 | 7.44e-23 | 103 |
Msa0460240 | MtrunA17_Chr5g0443761 | 31.390 | 223 | 137 | 4 | 6 | 214 | 866 | 1086 | 9.05e-21 | 97.4 |
Msa0460240 | MtrunA17_Chr3g0099591 | 33.155 | 187 | 110 | 5 | 27 | 203 | 1018 | 1199 | 1.63e-18 | 90.1 |
Msa0460240 | MtrunA17_Chr3g0105491 | 53.750 | 80 | 23 | 2 | 532 | 604 | 1 | 73 | 4.26e-17 | 76.3 |
Msa0460240 | MtrunA17_Chr8g0360991 | 32.335 | 167 | 103 | 4 | 53 | 214 | 1047 | 1208 | 9.79e-17 | 84.3 |
Msa0460240 | MtrunA17_Chr3g0106021 | 56.716 | 67 | 29 | 0 | 1 | 67 | 314 | 380 | 1.55e-16 | 82.0 |
Msa0460240 | MtrunA17_Chr3g0108201 | 41.732 | 127 | 60 | 2 | 337 | 449 | 2 | 128 | 5.14e-15 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 89 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGGTTTGGAATTCATTTATT+TGG | 0.203168 | 3_3:-57301108 | Msa0460240:CDS |
GACATCTTCTGAAGCTGTTT+TGG | 0.245236 | 3_3:-57298225 | Msa0460240:CDS |
CTCAATAGCCAAATGCTTCT+TGG | 0.250513 | 3_3:+57298631 | None:intergenic |
TGAAGATTTAAGTTCTTCTT+TGG | 0.267166 | 3_3:-57298684 | Msa0460240:CDS |
AATACTACAACTTTCAGATT+TGG | 0.284967 | 3_3:+57300675 | None:intergenic |
AGTTCTTCTTTGGTTGTCAC+TGG | 0.314939 | 3_3:-57298674 | Msa0460240:CDS |
AGGGGCTTTGTTATGGCAAT+TGG | 0.326732 | 3_3:+57299092 | None:intergenic |
AAGAGAAGCAGATGAGTTAG+AGG | 0.331520 | 3_3:-57300739 | Msa0460240:CDS |
AAATGCAATGCAAAAGCTAT+TGG | 0.331886 | 3_3:-57298339 | Msa0460240:CDS |
ATACCTTCAGAAGGCTTTGT+AGG | 0.335900 | 3_3:+57298800 | None:intergenic |
TGCACTAAGGGGCTTTGTTA+TGG | 0.336287 | 3_3:+57299085 | None:intergenic |
CAATAATATGCTTCAACTCT+TGG | 0.355524 | 3_3:+57300919 | None:intergenic |
GTCGATGAATGAACAAGAAA+TGG | 0.393531 | 3_3:-57299544 | Msa0460240:CDS |
ATTACAAGTATCGTGGCCTT+TGG | 0.395839 | 3_3:+57299900 | None:intergenic |
TTCAGAAAGCTCTTCCCATA+TGG | 0.396261 | 3_3:+57300779 | None:intergenic |
CTTTGTAGACATAAAATTTG+AGG | 0.406734 | 3_3:+57300872 | None:intergenic |
CATCCAACACACTACGCGTT+TGG | 0.406764 | 3_3:+57298486 | None:intergenic |
ACGAATATCTTCAACTTCCT+TGG | 0.414809 | 3_3:+57298298 | None:intergenic |
ATGTCTTTCCAGTCTCCATA+TGG | 0.414858 | 3_3:-57300794 | Msa0460240:CDS |
ACAAAAGATATCTTCTACAT+TGG | 0.415179 | 3_3:+57301163 | None:intergenic |
CTTCCTTGGTGACATGCTGC+TGG | 0.419517 | 3_3:+57298312 | None:intergenic |
ACAGCAAATGAGCTTAGGTT+TGG | 0.434823 | 3_3:-57301123 | Msa0460240:CDS |
ACAACAACTGTATTTAGCTT+CGG | 0.448267 | 3_3:+57300840 | None:intergenic |
GTTCTTCTTTGGTTGTCACT+GGG | 0.449801 | 3_3:-57298673 | Msa0460240:CDS |
ATCAACATCTTGTGCACTAA+GGG | 0.457145 | 3_3:+57299073 | None:intergenic |
TCTAGTCTCCAAGAAGCATT+TGG | 0.461496 | 3_3:-57298639 | Msa0460240:CDS |
CATCAACATCTTGTGCACTA+AGG | 0.462508 | 3_3:+57299072 | None:intergenic |
TTCATTGAGTAGCAGATACA+AGG | 0.465388 | 3_3:-57298549 | Msa0460240:CDS |
AATGAACAGCAAATGAGCTT+AGG | 0.469406 | 3_3:-57301128 | Msa0460240:CDS |
GTGTCCCTTAAAAGAATTGA+AGG | 0.472724 | 3_3:+57298572 | None:intergenic |
GCGTAGTGTGTTGGATGTGT+TGG | 0.477062 | 3_3:-57298480 | Msa0460240:CDS |
TAGCTCAGATAGGCAGTTGT+AGG | 0.477116 | 3_3:+57298520 | None:intergenic |
AGAGGAAATATTTGTAAGTG+AGG | 0.478016 | 3_3:-57300721 | Msa0460240:CDS |
CTACAAGATGTTAGCAGATG+TGG | 0.489741 | 3_3:-57298428 | Msa0460240:CDS |
CGTAGTGTGTTGGATGTGTT+GGG | 0.492588 | 3_3:-57298479 | Msa0460240:CDS |
GGAATTTCAATAGCTCAGAT+AGG | 0.504758 | 3_3:+57298510 | None:intergenic |
AGCTCTTCCCATATGGAGAC+TGG | 0.505744 | 3_3:+57300786 | None:intergenic |
GGAAGAGCTTTCTGAACTAA+AGG | 0.506794 | 3_3:-57300772 | Msa0460240:CDS |
TTCAGATATGACCGTGGCTA+CGG | 0.511167 | 3_3:-57300540 | Msa0460240:intron |
AAATCTTCATCTATTTGAGA+AGG | 0.511812 | 3_3:+57298698 | None:intergenic |
AATGAAGCTCCAGCACCATC+AGG | 0.511908 | 3_3:-57299880 | Msa0460240:CDS |
GCATATTATTGAAGATGACT+TGG | 0.515902 | 3_3:-57300907 | Msa0460240:CDS |
TGTTGATGTTAAAATCTGTC+AGG | 0.521157 | 3_3:-57299057 | Msa0460240:CDS |
GAAAGTAAGCTCAAATATTG+AGG | 0.522263 | 3_3:-57298891 | Msa0460240:CDS |
AATCTTCATCTATTTGAGAA+GGG | 0.526830 | 3_3:+57298699 | None:intergenic |
GAATTCCTTTCGCATGGCAA+AGG | 0.529925 | 3_3:+57300637 | None:intergenic |
TCGCATGGCAAAGGCTTGGT+AGG | 0.536718 | 3_3:+57300646 | None:intergenic |
GGCAATTGGATGAGAAGCTA+TGG | 0.540875 | 3_3:+57299106 | None:intergenic |
TTTGATAAGGAGTGGTTGGA+TGG | 0.543229 | 3_3:-57298404 | Msa0460240:CDS |
CCAACACACTACGCGTTTGG+AGG | 0.544005 | 3_3:+57298489 | None:intergenic |
ATGGAACAACAACGTCCACT+TGG | 0.544882 | 3_3:-57299525 | Msa0460240:CDS |
CCTCCAAACGCGTAGTGTGT+TGG | 0.546693 | 3_3:-57298489 | Msa0460240:CDS |
GAAATTGAATTCCTTTCGCA+TGG | 0.547929 | 3_3:+57300631 | None:intergenic |
TTCCTTGGTGACATGCTGCT+GGG | 0.548387 | 3_3:+57298313 | None:intergenic |
GAGGAAATATTTGTAAGTGA+GGG | 0.550814 | 3_3:-57300720 | Msa0460240:CDS |
AGTAGCACTAATGAGGATCA+AGG | 0.552074 | 3_3:-57299029 | Msa0460240:intron |
GTGGTTTCAACATCAACAGC+AGG | 0.553569 | 3_3:-57300564 | Msa0460240:CDS |
TGTCTTTCCAGTCTCCATAT+GGG | 0.554599 | 3_3:-57300793 | Msa0460240:CDS |
CCTTTCGCATGGCAAAGGCT+TGG | 0.554637 | 3_3:+57300642 | None:intergenic |
AACCCGTGTCCTGATGGTGC+TGG | 0.558128 | 3_3:+57299871 | None:intergenic |
AAATTGAGATGCAGTAGAAG+AGG | 0.561173 | 3_3:+57298823 | None:intergenic |
GAAGTCAACCCGTGTCCTGA+TGG | 0.562022 | 3_3:+57299865 | None:intergenic |
TTCTTCTTTGGTTGTCACTG+GGG | 0.562722 | 3_3:-57298672 | Msa0460240:CDS |
AAGAATAAAATACCTTCAGA+AGG | 0.564413 | 3_3:+57298791 | None:intergenic |
TTTCCTACAAAGCCTTCTGA+AGG | 0.570910 | 3_3:-57298803 | Msa0460240:intron |
GGAAACTAGTAGCACTAATG+AGG | 0.571990 | 3_3:-57299036 | Msa0460240:CDS |
TTGTGCTTTGACAAGTCTCA+AGG | 0.577464 | 3_3:-57301195 | Msa0460240:CDS |
CAGACACCTTATTATAGAAG+TGG | 0.584589 | 3_3:+57300974 | None:intergenic |
AATTGAGATGCAGTAGAAGA+GGG | 0.592863 | 3_3:+57298824 | None:intergenic |
TATAGATTATGAATTGTACA+AGG | 0.594273 | 3_3:-57299959 | Msa0460240:intron |
CCAAGCCTTTGCCATGCGAA+AGG | 0.595394 | 3_3:-57300642 | Msa0460240:CDS |
ACTGATTGCATCTCTTGTTG+AGG | 0.600546 | 3_3:+57299697 | None:intergenic |
GCTGCTTTAAGTGCTCCTCT+CGG | 0.608968 | 3_3:-57298161 | Msa0460240:CDS |
GTAGCATCAGTTTGTCCAAG+TGG | 0.614637 | 3_3:+57299510 | None:intergenic |
TAAAGTGTGTACCGTAGCCA+CGG | 0.619372 | 3_3:+57300529 | None:intergenic |
AGGACACGGGTTGACTTCAG+AGG | 0.621924 | 3_3:-57299860 | Msa0460240:intron |
CTCCAGCACCATCAGGACAC+GGG | 0.625045 | 3_3:-57299873 | Msa0460240:CDS |
GAATTGAAGGATGCTTAACA+AGG | 0.637134 | 3_3:+57298585 | None:intergenic |
GCTCCAGCACCATCAGGACA+CGG | 0.639857 | 3_3:-57299874 | Msa0460240:CDS |
CAATTACGTAATGAGTCCAA+AGG | 0.665219 | 3_3:-57299916 | Msa0460240:CDS |
TCATTGAGTAGCAGATACAA+GGG | 0.665656 | 3_3:-57298548 | Msa0460240:CDS |
TTCCCAGCAGCATGTCACCA+AGG | 0.668840 | 3_3:-57298315 | Msa0460240:CDS |
TGCTGTTGATGTTGAAACCA+CGG | 0.671157 | 3_3:+57300566 | None:intergenic |
GAGCTTCATTACAAGTATCG+TGG | 0.672204 | 3_3:+57299893 | None:intergenic |
TCAACATCTTGTGCACTAAG+GGG | 0.681437 | 3_3:+57299074 | None:intergenic |
ATTCTCAAAGTAAACAACTG+TGG | 0.682081 | 3_3:+57300951 | None:intergenic |
AAGATAGTCTAATAGCCGAG+AGG | 0.706213 | 3_3:+57298146 | None:intergenic |
GTAACTCAACAAATTCAGAG+TGG | 0.723822 | 3_3:+57298450 | None:intergenic |
GCAGGCTTCAGATATGACCG+TGG | 0.767418 | 3_3:-57300546 | Msa0460240:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | CTATATTTCTATATAAAATA+TGG | - | chr3_3:57299222-57299241 | Msa0460240:intron | 10.0% |
!! | ATATTGAATATGTATATATT+TGG | + | chr3_3:57299755-57299774 | None:intergenic | 10.0% |
!! | ATCTAATAAATTATACCATT+TGG | - | chr3_3:57299007-57299026 | Msa0460240:intron | 15.0% |
!! | AAAAAAAACTTGTATTAAAC+AGG | + | chr3_3:57299098-57299117 | None:intergenic | 15.0% |
!!! | TTTTTAATCTTGTAAGGTTT+TGG | + | chr3_3:57298333-57298352 | None:intergenic | 20.0% |
!! | AAATTATACCATTTGGTTAA+AGG | - | chr3_3:57299014-57299033 | Msa0460240:intron | 20.0% |
!! | ATTTATATCCTTTAACCAAA+TGG | + | chr3_3:57299025-57299044 | None:intergenic | 20.0% |
!!! | ACTTTTTAAGTATGAAAAAG+TGG | - | chr3_3:57299153-57299172 | Msa0460240:intron | 20.0% |
!!! | CTTTTTAAGTATGAAAAAGT+GGG | - | chr3_3:57299154-57299173 | Msa0460240:intron | 20.0% |
!! | TTCTATATAAAATATGGAAG+TGG | - | chr3_3:57299228-57299247 | Msa0460240:intron | 20.0% |
!! | TATAGATTATGAATTGTACA+AGG | - | chr3_3:57299401-57299420 | Msa0460240:intron | 20.0% |
!!! | CAAATTACTTTTGAATTTGT+TGG | + | chr3_3:57299699-57299718 | None:intergenic | 20.0% |
!! | CAAATTCAAAAGTAATTTGA+AGG | - | chr3_3:57299700-57299719 | Msa0460240:CDS | 20.0% |
!!! | ATTACATTATTTTCTTGAGA+AGG | + | chr3_3:57299883-57299902 | None:intergenic | 20.0% |
!!! | ATTTGAATTTTGTAGAAAGA+AGG | - | chr3_3:57300217-57300236 | Msa0460240:intron | 20.0% |
!!! | CTTTAACTTCAAAATGAAAA+GGG | + | chr3_3:57300399-57300418 | None:intergenic | 20.0% |
!!! | ACTTTAACTTCAAAATGAAA+AGG | + | chr3_3:57300400-57300419 | None:intergenic | 20.0% |
! | ACAAAAGATATCTTCTACAT+TGG | + | chr3_3:57298200-57298219 | None:intergenic | 25.0% |
!! | AGGTTTGGAATTCATTTATT+TGG | - | chr3_3:57298252-57298271 | Msa0460240:CDS | 25.0% |
!! | TGGAGAGAAAATGAATTTTT+GGG | + | chr3_3:57298313-57298332 | None:intergenic | 25.0% |
!! | TTGGAGAGAAAATGAATTTT+TGG | + | chr3_3:57298314-57298333 | None:intergenic | 25.0% |
!! | GCTTGATTTTTAATCTTGTA+AGG | + | chr3_3:57298339-57298358 | None:intergenic | 25.0% |
!! | TTTTCTCCACTTCTATAATA+AGG | - | chr3_3:57298380-57298399 | Msa0460240:CDS | 25.0% |
! | CTTTGTAGACATAAAATTTG+AGG | + | chr3_3:57298491-57298510 | None:intergenic | 25.0% |
! | AATACTACAACTTTCAGATT+TGG | + | chr3_3:57298688-57298707 | None:intergenic | 25.0% |
!!! | TTCTAGACGAATTTTAAAAG+GGG | + | chr3_3:57298962-57298981 | None:intergenic | 25.0% |
!!! | CTTCTAGACGAATTTTAAAA+GGG | + | chr3_3:57298963-57298982 | None:intergenic | 25.0% |
!! | TCTTCTAGACGAATTTTAAA+AGG | + | chr3_3:57298964-57298983 | None:intergenic | 25.0% |
!!! | CAAGTTTTTTTTTTTCCTCT+AGG | - | chr3_3:57299106-57299125 | Msa0460240:CDS | 25.0% |
! | TATTATGAATCCAATCATCA+AGG | - | chr3_3:57299552-57299571 | Msa0460240:intron | 25.0% |
!! | ATTTTTGATGCAGAAAGAAA+TGG | - | chr3_3:57299599-57299618 | Msa0460240:intron | 25.0% |
! | GAATATGTATATATTTGGAG+AGG | + | chr3_3:57299750-57299769 | None:intergenic | 25.0% |
! | AATTCATATGTTCTTACTAC+AGG | - | chr3_3:57299792-57299811 | Msa0460240:intron | 25.0% |
!! | ATTTTATGCTATCAGTTGAA+GGG | - | chr3_3:57299977-57299996 | Msa0460240:intron | 25.0% |
! | TTGAAAACGTGTAAAAATGA+GGG | + | chr3_3:57300107-57300126 | None:intergenic | 25.0% |
!! | TTTTTACACGTTTTCAACTT+AGG | - | chr3_3:57300110-57300129 | Msa0460240:intron | 25.0% |
!! | TATTGAGGATCAATTTTCTA+AGG | - | chr3_3:57300484-57300503 | Msa0460240:intron | 25.0% |
! | AAGAATAAAATACCTTCAGA+AGG | + | chr3_3:57300572-57300591 | None:intergenic | 25.0% |
! | TTATTCTTTCCTATACTTTC+AGG | - | chr3_3:57300635-57300654 | Msa0460240:CDS | 25.0% |
! | TATTCTTTCCTATACTTTCA+GGG | - | chr3_3:57300636-57300655 | Msa0460240:CDS | 25.0% |
! | AATCTTCATCTATTTGAGAA+GGG | + | chr3_3:57300664-57300683 | None:intergenic | 25.0% |
! | AAATCTTCATCTATTTGAGA+AGG | + | chr3_3:57300665-57300684 | None:intergenic | 25.0% |
!! | TGAAGATTTAAGTTCTTCTT+TGG | - | chr3_3:57300676-57300695 | Msa0460240:CDS | 25.0% |
!!! | TTTTGAGAGAATTGTAAATC+AGG | + | chr3_3:57301004-57301023 | None:intergenic | 25.0% |
!! | ACACATTTTTAATCAACATG+TGG | - | chr3_3:57301093-57301112 | Msa0460240:CDS | 25.0% |
ATTCTCAAAGTAAACAACTG+TGG | + | chr3_3:57298412-57298431 | None:intergenic | 30.0% | |
CAATAATATGCTTCAACTCT+TGG | + | chr3_3:57298444-57298463 | None:intergenic | 30.0% | |
GCATATTATTGAAGATGACT+TGG | - | chr3_3:57298453-57298472 | Msa0460240:CDS | 30.0% | |
! | ACAACAACTGTATTTAGCTT+CGG | + | chr3_3:57298523-57298542 | None:intergenic | 30.0% |
AGAGGAAATATTTGTAAGTG+AGG | - | chr3_3:57298639-57298658 | Msa0460240:CDS | 30.0% | |
GAGGAAATATTTGTAAGTGA+GGG | - | chr3_3:57298640-57298659 | Msa0460240:CDS | 30.0% | |
! | TGACAATTTAAAGTCGAAAG+TGG | - | chr3_3:57299311-57299330 | Msa0460240:intron | 30.0% |
! | CATTTTATGCTATCAGTTGA+AGG | - | chr3_3:57299976-57299995 | Msa0460240:intron | 30.0% |
!! | ATTCCTTGTTGTTTCTGAAA+TGG | + | chr3_3:57300041-57300060 | None:intergenic | 30.0% |
TGAAAACGTGTAAAAATGAG+GGG | + | chr3_3:57300106-57300125 | None:intergenic | 30.0% | |
GTTGAAAACGTGTAAAAATG+AGG | + | chr3_3:57300108-57300127 | None:intergenic | 30.0% | |
TGTTGATGTTAAAATCTGTC+AGG | - | chr3_3:57300303-57300322 | Msa0460240:intron | 30.0% | |
CATTTAGAGAAACTGACAAA+AGG | + | chr3_3:57300436-57300455 | None:intergenic | 30.0% | |
GAAAGTAAGCTCAAATATTG+AGG | - | chr3_3:57300469-57300488 | Msa0460240:intron | 30.0% | |
ATTCTTTCCTATACTTTCAG+GGG | - | chr3_3:57300637-57300656 | Msa0460240:CDS | 30.0% | |
! | AGCATCCTTCAATTCTTTTA+AGG | - | chr3_3:57300783-57300802 | Msa0460240:CDS | 30.0% |
! | GCATCCTTCAATTCTTTTAA+GGG | - | chr3_3:57300784-57300803 | Msa0460240:CDS | 30.0% |
AAATGCAATGCAAAAGCTAT+TGG | - | chr3_3:57301021-57301040 | Msa0460240:CDS | 30.0% | |
!!! | AGCACAAGTTTTAGAAACTA+AGG | - | chr3_3:57301177-57301196 | Msa0460240:CDS | 30.0% |
AATGAACAGCAAATGAGCTT+AGG | - | chr3_3:57298232-57298251 | Msa0460240:CDS | 35.0% | |
! | ACAAAAAGGCATGTCATCAT+TGG | + | chr3_3:57298286-57298305 | None:intergenic | 35.0% |
! | AATGATGACATGCCTTTTTG+TGG | - | chr3_3:57298285-57298304 | Msa0460240:CDS | 35.0% |
! | ATGATGACATGCCTTTTTGT+GGG | - | chr3_3:57298286-57298305 | Msa0460240:CDS | 35.0% |
!!! | AATTTTTGGGACCCACAAAA+AGG | + | chr3_3:57298300-57298319 | None:intergenic | 35.0% |
CAGACACCTTATTATAGAAG+TGG | + | chr3_3:57298389-57298408 | None:intergenic | 35.0% | |
GAAATTGAATTCCTTTCGCA+TGG | + | chr3_3:57298732-57298751 | None:intergenic | 35.0% | |
ATCATGCTGTAAACTTACCA+AGG | - | chr3_3:57298888-57298907 | Msa0460240:CDS | 35.0% | |
CTTACCAAGGACTAGATTTA+AGG | - | chr3_3:57298901-57298920 | Msa0460240:CDS | 35.0% | |
TCATCCTTAAATCTAGTCCT+TGG | + | chr3_3:57298908-57298927 | None:intergenic | 35.0% | |
! | AATTGAAGCACCTAAAGTAG+AGG | - | chr3_3:57299045-57299064 | Msa0460240:CDS | 35.0% |
ATCATGCATACCTCTACTTT+AGG | + | chr3_3:57299058-57299077 | None:intergenic | 35.0% | |
TATGAAAAAGTGGGATGTTG+CGG | - | chr3_3:57299163-57299182 | Msa0460240:intron | 35.0% | |
! | GTCATCTTCAAGTTCAAAGA+TGG | + | chr3_3:57299295-57299314 | None:intergenic | 35.0% |
CAATTACGTAATGAGTCCAA+AGG | - | chr3_3:57299444-57299463 | Msa0460240:intron | 35.0% | |
! | AAATACACTGCCTTGATGAT+TGG | + | chr3_3:57299565-57299584 | None:intergenic | 35.0% |
ATATCCAAGTGATCTTCACA+TGG | + | chr3_3:57299726-57299745 | None:intergenic | 35.0% | |
GTCGATGAATGAACAAGAAA+TGG | - | chr3_3:57299816-57299835 | Msa0460240:intron | 35.0% | |
!! | TTAGCTTTACATGCACAATG+AGG | + | chr3_3:57299915-57299934 | None:intergenic | 35.0% |
TTAAGAGCAGCTAACTGTAT+AGG | + | chr3_3:57300070-57300089 | None:intergenic | 35.0% | |
GTTAGCTGCTCTTAAACATA+AGG | - | chr3_3:57300075-57300094 | Msa0460240:intron | 35.0% | |
ATCAACATCTTGTGCACTAA+GGG | + | chr3_3:57300290-57300309 | None:intergenic | 35.0% | |
TAGAGAAACTGACAAAAGGT+GGG | + | chr3_3:57300432-57300451 | None:intergenic | 35.0% | |
TTAGAGAAACTGACAAAAGG+TGG | + | chr3_3:57300433-57300452 | None:intergenic | 35.0% | |
AATTGAGATGCAGTAGAAGA+GGG | + | chr3_3:57300539-57300558 | None:intergenic | 35.0% | |
AAATTGAGATGCAGTAGAAG+AGG | + | chr3_3:57300540-57300559 | None:intergenic | 35.0% | |
GAATTGAAGGATGCTTAACA+AGG | + | chr3_3:57300778-57300797 | None:intergenic | 35.0% | |
GTGTCCCTTAAAAGAATTGA+AGG | + | chr3_3:57300791-57300810 | None:intergenic | 35.0% | |
TTCATTGAGTAGCAGATACA+AGG | - | chr3_3:57300811-57300830 | Msa0460240:CDS | 35.0% | |
TCATTGAGTAGCAGATACAA+GGG | - | chr3_3:57300812-57300831 | Msa0460240:CDS | 35.0% | |
GGAATTTCAATAGCTCAGAT+AGG | + | chr3_3:57300853-57300872 | None:intergenic | 35.0% | |
GTAACTCAACAAATTCAGAG+TGG | + | chr3_3:57300913-57300932 | None:intergenic | 35.0% | |
!!! | TAGCAGATGTGGTTTTGATA+AGG | - | chr3_3:57300943-57300962 | Msa0460240:CDS | 35.0% |
ACGAATATCTTCAACTTCCT+TGG | + | chr3_3:57301065-57301084 | None:intergenic | 35.0% | |
TTGTGCTTTGACAAGTCTCA+AGG | - | chr3_3:57298165-57298184 | Msa0460240:CDS | 40.0% | |
ACAGCAAATGAGCTTAGGTT+TGG | - | chr3_3:57298237-57298256 | Msa0460240:CDS | 40.0% | |
ATGTCTTTCCAGTCTCCATA+TGG | - | chr3_3:57298566-57298585 | Msa0460240:CDS | 40.0% | |
TGTCTTTCCAGTCTCCATAT+GGG | - | chr3_3:57298567-57298586 | Msa0460240:CDS | 40.0% | |
TTCAGAAAGCTCTTCCCATA+TGG | + | chr3_3:57298584-57298603 | None:intergenic | 40.0% | |
GGAAGAGCTTTCTGAACTAA+AGG | - | chr3_3:57298588-57298607 | Msa0460240:CDS | 40.0% | |
AAGAGAAGCAGATGAGTTAG+AGG | - | chr3_3:57298621-57298640 | Msa0460240:CDS | 40.0% | |
GAATTGTCAAAAACTCTCCG+TGG | - | chr3_3:57298777-57298796 | Msa0460240:intron | 40.0% | |
TGCTGTTGATGTTGAAACCA+CGG | + | chr3_3:57298797-57298816 | None:intergenic | 40.0% | |
GTATGCATGATAAGAGCTTG+TGG | - | chr3_3:57299067-57299086 | Msa0460240:CDS | 40.0% | |
CTCTAGGTCAAGTAGTTTAG+CGG | - | chr3_3:57299122-57299141 | Msa0460240:CDS | 40.0% | |
ATGAAAAAGTGGGATGTTGC+GGG | - | chr3_3:57299164-57299183 | Msa0460240:intron | 40.0% | |
! | ATTACAAGTATCGTGGCCTT+TGG | + | chr3_3:57299463-57299482 | None:intergenic | 40.0% |
! | GAGCTTCATTACAAGTATCG+TGG | + | chr3_3:57299470-57299489 | None:intergenic | 40.0% |
ACTGATTGCATCTCTTGTTG+AGG | + | chr3_3:57299666-57299685 | None:intergenic | 40.0% | |
CGACCATTTCAGAAACAACA+AGG | - | chr3_3:57300035-57300054 | Msa0460240:intron | 40.0% | |
TCAACATCTTGTGCACTAAG+GGG | + | chr3_3:57300289-57300308 | None:intergenic | 40.0% | |
CATCAACATCTTGTGCACTA+AGG | + | chr3_3:57300291-57300310 | None:intergenic | 40.0% | |
GGAAACTAGTAGCACTAATG+AGG | - | chr3_3:57300324-57300343 | Msa0460240:intron | 40.0% | |
AGTAGCACTAATGAGGATCA+AGG | - | chr3_3:57300331-57300350 | Msa0460240:intron | 40.0% | |
TTTCCTACAAAGCCTTCTGA+AGG | - | chr3_3:57300557-57300576 | Msa0460240:CDS | 40.0% | |
! | ATACCTTCAGAAGGCTTTGT+AGG | + | chr3_3:57300563-57300582 | None:intergenic | 40.0% |
AGTTCTTCTTTGGTTGTCAC+TGG | - | chr3_3:57300686-57300705 | Msa0460240:CDS | 40.0% | |
GTTCTTCTTTGGTTGTCACT+GGG | - | chr3_3:57300687-57300706 | Msa0460240:CDS | 40.0% | |
TTCTTCTTTGGTTGTCACTG+GGG | - | chr3_3:57300688-57300707 | Msa0460240:CDS | 40.0% | |
!! | TCTAGTCTCCAAGAAGCATT+TGG | - | chr3_3:57300721-57300740 | Msa0460240:CDS | 40.0% |
CTCAATAGCCAAATGCTTCT+TGG | + | chr3_3:57300732-57300751 | None:intergenic | 40.0% | |
CTACAAGATGTTAGCAGATG+TGG | - | chr3_3:57300932-57300951 | Msa0460240:CDS | 40.0% | |
!!! | GATGTGGTTTTGATAAGGAG+TGG | - | chr3_3:57300948-57300967 | Msa0460240:CDS | 40.0% |
!!! | TGGTTTTGATAAGGAGTGGT+TGG | - | chr3_3:57300952-57300971 | Msa0460240:CDS | 40.0% |
TTTGATAAGGAGTGGTTGGA+TGG | - | chr3_3:57300956-57300975 | Msa0460240:CDS | 40.0% | |
!!! | GACATCTTCTGAAGCTGTTT+TGG | - | chr3_3:57301135-57301154 | Msa0460240:CDS | 40.0% |
GAATTCCTTTCGCATGGCAA+AGG | + | chr3_3:57298726-57298745 | None:intergenic | 45.0% | |
GTGGTTTCAACATCAACAGC+AGG | - | chr3_3:57298796-57298815 | Msa0460240:intron | 45.0% | |
TTCAGATATGACCGTGGCTA+CGG | - | chr3_3:57298820-57298839 | Msa0460240:CDS | 45.0% | |
TAAAGTGTGTACCGTAGCCA+CGG | + | chr3_3:57298834-57298853 | None:intergenic | 45.0% | |
TGCATGATAAGAGCTTGTGG+AGG | - | chr3_3:57299070-57299089 | Msa0460240:CDS | 45.0% | |
GCATGATAAGAGCTTGTGGA+GGG | - | chr3_3:57299071-57299090 | Msa0460240:CDS | 45.0% | |
CGCTAAACTACTTGACCTAG+AGG | + | chr3_3:57299124-57299143 | None:intergenic | 45.0% | |
AGCTCAGTACATCTGTTTGC+AGG | + | chr3_3:57299204-57299223 | None:intergenic | 45.0% | |
AAGGCCATGTGAAGATCACT+TGG | - | chr3_3:57299719-57299738 | Msa0460240:CDS | 45.0% | |
ATGGAACAACAACGTCCACT+TGG | - | chr3_3:57299835-57299854 | Msa0460240:intron | 45.0% | |
GTAGCATCAGTTTGTCCAAG+TGG | + | chr3_3:57299853-57299872 | None:intergenic | 45.0% | |
GCTTTACATGCACAATGAGG+TGG | + | chr3_3:57299912-57299931 | None:intergenic | 45.0% | |
GGCAATTGGATGAGAAGCTA+TGG | + | chr3_3:57300257-57300276 | None:intergenic | 45.0% | |
!! | AGGGGCTTTGTTATGGCAAT+TGG | + | chr3_3:57300271-57300290 | None:intergenic | 45.0% |
!! | TGCACTAAGGGGCTTTGTTA+TGG | + | chr3_3:57300278-57300297 | None:intergenic | 45.0% |
TAGCTCAGATAGGCAGTTGT+AGG | + | chr3_3:57300843-57300862 | None:intergenic | 45.0% | |
CGTAGTGTGTTGGATGTGTT+GGG | - | chr3_3:57300881-57300900 | Msa0460240:CDS | 45.0% | |
!!! | TATGAATTTTTATTTTTTAT+AGG | + | chr3_3:57300181-57300200 | None:intergenic | 5.0% |
AGCTCTTCCCATATGGAGAC+TGG | + | chr3_3:57298577-57298596 | None:intergenic | 50.0% | |
AAAGTGGGATGTTGCGGGTT+CGG | - | chr3_3:57299169-57299188 | Msa0460240:intron | 50.0% | |
CATCTGTTTGCAGGAGAGCA+GGG | + | chr3_3:57299195-57299214 | None:intergenic | 50.0% | |
ACATCTGTTTGCAGGAGAGC+AGG | + | chr3_3:57299196-57299215 | None:intergenic | 50.0% | |
AATGAAGCTCCAGCACCATC+AGG | - | chr3_3:57299480-57299499 | Msa0460240:intron | 50.0% | |
! | GAAGGGTCCCCTGAAAGTAT+AGG | + | chr3_3:57300647-57300666 | None:intergenic | 50.0% |
CATCCAACACACTACGCGTT+TGG | + | chr3_3:57300877-57300896 | None:intergenic | 50.0% | |
GCGTAGTGTGTTGGATGTGT+TGG | - | chr3_3:57300880-57300899 | Msa0460240:CDS | 50.0% | |
! | TTCCTTGGTGACATGCTGCT+GGG | + | chr3_3:57301050-57301069 | None:intergenic | 50.0% |
! | GCTGCTTTAAGTGCTCCTCT+CGG | - | chr3_3:57301199-57301218 | Msa0460240:CDS | 50.0% |
! | TCGCATGGCAAAGGCTTGGT+AGG | + | chr3_3:57298717-57298736 | None:intergenic | 55.0% |
CCTTTCGCATGGCAAAGGCT+TGG | + | chr3_3:57298721-57298740 | None:intergenic | 55.0% | |
CCAAGCCTTTGCCATGCGAA+AGG | - | chr3_3:57298718-57298737 | Msa0460240:intron | 55.0% | |
GCAGGCTTCAGATATGACCG+TGG | - | chr3_3:57298814-57298833 | Msa0460240:CDS | 55.0% | |
GAAGTCAACCCGTGTCCTGA+TGG | + | chr3_3:57299498-57299517 | None:intergenic | 55.0% | |
! | AGGACACGGGTTGACTTCAG+AGG | - | chr3_3:57299500-57299519 | Msa0460240:CDS | 55.0% |
CCAACACACTACGCGTTTGG+AGG | + | chr3_3:57300874-57300893 | None:intergenic | 55.0% | |
CCTCCAAACGCGTAGTGTGT+TGG | - | chr3_3:57300871-57300890 | Msa0460240:CDS | 55.0% | |
TTCCCAGCAGCATGTCACCA+AGG | - | chr3_3:57301045-57301064 | Msa0460240:CDS | 55.0% | |
! | CTTCCTTGGTGACATGCTGC+TGG | + | chr3_3:57301051-57301070 | None:intergenic | 55.0% |
GCTCCAGCACCATCAGGACA+CGG | - | chr3_3:57299486-57299505 | Msa0460240:CDS | 60.0% | |
CTCCAGCACCATCAGGACAC+GGG | - | chr3_3:57299487-57299506 | Msa0460240:CDS | 60.0% | |
! | AACCCGTGTCCTGATGGTGC+TGG | + | chr3_3:57299492-57299511 | None:intergenic | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 57298154 | 57301228 | 57298154 | ID=Msa0460240;Name=Msa0460240 |
chr3_3 | mRNA | 57298154 | 57301228 | 57298154 | ID=Msa0460240-mRNA-1;Parent=Msa0460240;Name=Msa0460240-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0|0|1|1|1|7|0|604 |
chr3_3 | exon | 57300541 | 57301228 | 57300541 | ID=Msa0460240-mRNA-1:exon:11662;Parent=Msa0460240-mRNA-1 |
chr3_3 | exon | 57299861 | 57299976 | 57299861 | ID=Msa0460240-mRNA-1:exon:11661;Parent=Msa0460240-mRNA-1 |
chr3_3 | exon | 57299672 | 57299770 | 57299672 | ID=Msa0460240-mRNA-1:exon:11660;Parent=Msa0460240-mRNA-1 |
chr3_3 | exon | 57299485 | 57299568 | 57299485 | ID=Msa0460240-mRNA-1:exon:11659;Parent=Msa0460240-mRNA-1 |
chr3_3 | exon | 57299030 | 57299150 | 57299030 | ID=Msa0460240-mRNA-1:exon:11658;Parent=Msa0460240-mRNA-1 |
chr3_3 | exon | 57298804 | 57298938 | 57298804 | ID=Msa0460240-mRNA-1:exon:11657;Parent=Msa0460240-mRNA-1 |
chr3_3 | exon | 57298154 | 57298725 | 57298154 | ID=Msa0460240-mRNA-1:exon:11656;Parent=Msa0460240-mRNA-1 |
chr3_3 | CDS | 57300541 | 57301228 | 57300541 | ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1 |
chr3_3 | CDS | 57299861 | 57299976 | 57299861 | ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1 |
chr3_3 | CDS | 57299672 | 57299770 | 57299672 | ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1 |
chr3_3 | CDS | 57299485 | 57299568 | 57299485 | ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1 |
chr3_3 | CDS | 57299030 | 57299150 | 57299030 | ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1 |
chr3_3 | CDS | 57298804 | 57298938 | 57298804 | ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1 |
chr3_3 | CDS | 57298154 | 57298725 | 57298154 | ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1 |
Gene Sequence |
Protein sequence |