AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0460240


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0460240 MtrunA17_Chr3g0107931 65.533 676 138 11 1 604 1235 1887 0.0 812
Msa0460240 MtrunA17_Chr3g0091861 56.768 724 168 12 1 595 1157 1864 0.0 714
Msa0460240 MtrunA17_Chr3g0108821 61.404 627 189 12 1 604 1206 1802 0.0 678
Msa0460240 MtrunA17_Chr3g0108151 57.213 610 205 11 3 604 982 1543 0.0 592
Msa0460240 MtrunA17_Chr3g0108811 57.549 563 186 10 62 604 1401 1930 0.0 568
Msa0460240 MtrunA17_Chr3g0108811 56.621 219 82 4 1 213 1227 1438 4.10e-63 226
Msa0460240 MtrunA17_Chr3g0108071 53.701 635 199 14 3 574 359 961 0.0 558
Msa0460240 MtrunA17_Chr3g0108171 78.771 358 54 1 269 604 1610 1967 7.34e-176 546
Msa0460240 MtrunA17_Chr3g0108171 50.000 562 151 12 3 448 1079 1626 2.78e-145 462
Msa0460240 MtrunA17_Chr3g0105521 49.351 616 244 12 24 604 1023 1605 1.62e-157 491
Msa0460240 MtrunA17_Chr3g0105521 27.919 197 126 5 4 191 638 827 5.01e-11 66.2
Msa0460240 MtrunA17_Chr3g0108111 54.000 450 137 9 3 388 160 603 1.22e-139 419
Msa0460240 MtrunA17_Chr3g0108091 50.289 519 172 12 119 574 3 498 7.63e-138 411
Msa0460240 MtrunA17_Chr3g0108091 40.669 359 121 11 84 424 5 289 2.03e-57 201
Msa0460240 MtrunA17_Chr3g0108011 67.341 346 76 6 1 329 1244 1569 7.98e-133 426
Msa0460240 MtrunA17_Chr3g0097011 67.719 285 71 3 320 604 134 397 2.26e-120 362
Msa0460240 MtrunA17_Chr3g0107261 62.838 296 102 2 316 604 105 399 4.41e-117 353
Msa0460240 MtrunA17_Chr3g0091851 42.703 555 234 12 62 604 833 1315 1.83e-105 346
Msa0460240 MtrunA17_Chr3g0107271 69.099 233 64 4 1 229 13 241 7.83e-104 314
Msa0460240 MtrunA17_Chr3g0087641 76.500 200 47 0 349 548 148 347 1.18e-100 310
Msa0460240 MtrunA17_Chr2g0304131 60.000 270 96 2 347 604 46 315 2.06e-98 302
Msa0460240 MtrunA17_Chr3g0105471 64.113 248 75 4 362 604 8 246 2.30e-94 290
Msa0460240 MtrunA17_Chr3g0105591 43.973 448 151 13 230 604 15 435 1.16e-89 284
Msa0460240 MtrunA17_Chr3g0107641 74.211 190 48 1 415 604 4 192 5.86e-88 271
Msa0460240 MtrunA17_Chr3g0108761 70.312 192 43 1 413 604 3 180 1.70e-85 264
Msa0460240 MtrunA17_Chr3g0097601 62.100 219 81 2 1 218 14 231 1.03e-82 260
Msa0460240 MtrunA17_Chr3g0105551 47.906 382 114 9 299 604 1492 1864 1.77e-80 277
Msa0460240 MtrunA17_Chr3g0105551 61.194 201 68 2 24 217 1141 1338 1.84e-66 236
Msa0460240 MtrunA17_Chr3g0105551 28.426 197 125 5 4 191 756 945 4.72e-12 69.7
Msa0460240 MtrunA17_Chr3g0096701 44.591 379 167 13 59 412 39 399 5.00e-75 254
Msa0460240 MtrunA17_Chr3g0105601 59.070 215 76 3 24 231 261 470 1.32e-70 236
Msa0460240 MtrunA17_Chr3g0105481 41.624 394 178 10 24 391 1055 1422 1.37e-69 245
Msa0460240 MtrunA17_Chr3g0105481 29.630 189 124 5 4 191 707 887 3.83e-11 66.6
Msa0460240 MtrunA17_Chr3g0096771 50.558 269 94 5 348 604 48 289 6.62e-67 219
Msa0460240 MtrunA17_Chr3g0105501 57.921 202 73 4 31 230 1 192 2.18e-66 216
Msa0460240 MtrunA17_Chr3g0107171 67.683 164 46 2 443 604 225 383 5.30e-64 215
Msa0460240 MtrunA17_Chr3g0107081 59.551 178 60 3 54 231 29 194 9.01e-61 201
Msa0460240 MtrunA17_Chr7g0223911 66.667 138 39 1 467 604 30 160 2.34e-54 182
Msa0460240 MtrunA17_Chr2g0288311 61.146 157 33 3 71 226 30 159 1.28e-48 167
Msa0460240 MtrunA17_Chr7g0229711 55.696 158 47 3 435 592 5 139 4.52e-44 154
Msa0460240 MtrunA17_Chr1g0160951 35.897 273 160 4 1 258 1005 1277 3.40e-42 164
Msa0460240 MtrunA17_Chr3g0112521 81.690 71 13 0 519 589 6 76 3.81e-33 121
Msa0460240 MtrunA17_Chr3g0107201 35.821 268 139 8 136 376 2 263 6.06e-33 134
Msa0460240 MtrunA17_Chr3g0109131 82.895 76 13 0 529 604 97 172 6.09e-33 124
Msa0460240 MtrunA17_Chr3g0096801 49.640 139 56 3 136 272 2 128 6.13e-32 120
Msa0460240 MtrunA17_Chr5g0439121 31.195 343 196 12 7 331 1294 1614 1.50e-31 131
Msa0460240 MtrunA17_Chr5g0439121 31.609 174 107 4 7 174 975 1142 2.68e-13 73.6
Msa0460240 MtrunA17_Chr5g0439121 25.926 270 177 7 56 310 779 1040 2.95e-12 70.1
Msa0460240 MtrunA17_Chr3g0100241 40.127 157 85 3 53 203 37 190 4.59e-27 109
Msa0460240 MtrunA17_Chr3g0100261 37.968 187 100 5 29 203 1026 1208 7.44e-23 103
Msa0460240 MtrunA17_Chr5g0443761 31.390 223 137 4 6 214 866 1086 9.05e-21 97.4
Msa0460240 MtrunA17_Chr3g0099591 33.155 187 110 5 27 203 1018 1199 1.63e-18 90.1
Msa0460240 MtrunA17_Chr3g0105491 53.750 80 23 2 532 604 1 73 4.26e-17 76.3
Msa0460240 MtrunA17_Chr8g0360991 32.335 167 103 4 53 214 1047 1208 9.79e-17 84.3
Msa0460240 MtrunA17_Chr3g0106021 56.716 67 29 0 1 67 314 380 1.55e-16 82.0
Msa0460240 MtrunA17_Chr3g0108201 41.732 127 60 2 337 449 2 128 5.14e-15 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 89 sgRNAs with CRISPR-Local

Find 171 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGTTTGGAATTCATTTATT+TGG 0.203168 3_3:-57301108 Msa0460240:CDS
GACATCTTCTGAAGCTGTTT+TGG 0.245236 3_3:-57298225 Msa0460240:CDS
CTCAATAGCCAAATGCTTCT+TGG 0.250513 3_3:+57298631 None:intergenic
TGAAGATTTAAGTTCTTCTT+TGG 0.267166 3_3:-57298684 Msa0460240:CDS
AATACTACAACTTTCAGATT+TGG 0.284967 3_3:+57300675 None:intergenic
AGTTCTTCTTTGGTTGTCAC+TGG 0.314939 3_3:-57298674 Msa0460240:CDS
AGGGGCTTTGTTATGGCAAT+TGG 0.326732 3_3:+57299092 None:intergenic
AAGAGAAGCAGATGAGTTAG+AGG 0.331520 3_3:-57300739 Msa0460240:CDS
AAATGCAATGCAAAAGCTAT+TGG 0.331886 3_3:-57298339 Msa0460240:CDS
ATACCTTCAGAAGGCTTTGT+AGG 0.335900 3_3:+57298800 None:intergenic
TGCACTAAGGGGCTTTGTTA+TGG 0.336287 3_3:+57299085 None:intergenic
CAATAATATGCTTCAACTCT+TGG 0.355524 3_3:+57300919 None:intergenic
GTCGATGAATGAACAAGAAA+TGG 0.393531 3_3:-57299544 Msa0460240:CDS
ATTACAAGTATCGTGGCCTT+TGG 0.395839 3_3:+57299900 None:intergenic
TTCAGAAAGCTCTTCCCATA+TGG 0.396261 3_3:+57300779 None:intergenic
CTTTGTAGACATAAAATTTG+AGG 0.406734 3_3:+57300872 None:intergenic
CATCCAACACACTACGCGTT+TGG 0.406764 3_3:+57298486 None:intergenic
ACGAATATCTTCAACTTCCT+TGG 0.414809 3_3:+57298298 None:intergenic
ATGTCTTTCCAGTCTCCATA+TGG 0.414858 3_3:-57300794 Msa0460240:CDS
ACAAAAGATATCTTCTACAT+TGG 0.415179 3_3:+57301163 None:intergenic
CTTCCTTGGTGACATGCTGC+TGG 0.419517 3_3:+57298312 None:intergenic
ACAGCAAATGAGCTTAGGTT+TGG 0.434823 3_3:-57301123 Msa0460240:CDS
ACAACAACTGTATTTAGCTT+CGG 0.448267 3_3:+57300840 None:intergenic
GTTCTTCTTTGGTTGTCACT+GGG 0.449801 3_3:-57298673 Msa0460240:CDS
ATCAACATCTTGTGCACTAA+GGG 0.457145 3_3:+57299073 None:intergenic
TCTAGTCTCCAAGAAGCATT+TGG 0.461496 3_3:-57298639 Msa0460240:CDS
CATCAACATCTTGTGCACTA+AGG 0.462508 3_3:+57299072 None:intergenic
TTCATTGAGTAGCAGATACA+AGG 0.465388 3_3:-57298549 Msa0460240:CDS
AATGAACAGCAAATGAGCTT+AGG 0.469406 3_3:-57301128 Msa0460240:CDS
GTGTCCCTTAAAAGAATTGA+AGG 0.472724 3_3:+57298572 None:intergenic
GCGTAGTGTGTTGGATGTGT+TGG 0.477062 3_3:-57298480 Msa0460240:CDS
TAGCTCAGATAGGCAGTTGT+AGG 0.477116 3_3:+57298520 None:intergenic
AGAGGAAATATTTGTAAGTG+AGG 0.478016 3_3:-57300721 Msa0460240:CDS
CTACAAGATGTTAGCAGATG+TGG 0.489741 3_3:-57298428 Msa0460240:CDS
CGTAGTGTGTTGGATGTGTT+GGG 0.492588 3_3:-57298479 Msa0460240:CDS
GGAATTTCAATAGCTCAGAT+AGG 0.504758 3_3:+57298510 None:intergenic
AGCTCTTCCCATATGGAGAC+TGG 0.505744 3_3:+57300786 None:intergenic
GGAAGAGCTTTCTGAACTAA+AGG 0.506794 3_3:-57300772 Msa0460240:CDS
TTCAGATATGACCGTGGCTA+CGG 0.511167 3_3:-57300540 Msa0460240:intron
AAATCTTCATCTATTTGAGA+AGG 0.511812 3_3:+57298698 None:intergenic
AATGAAGCTCCAGCACCATC+AGG 0.511908 3_3:-57299880 Msa0460240:CDS
GCATATTATTGAAGATGACT+TGG 0.515902 3_3:-57300907 Msa0460240:CDS
TGTTGATGTTAAAATCTGTC+AGG 0.521157 3_3:-57299057 Msa0460240:CDS
GAAAGTAAGCTCAAATATTG+AGG 0.522263 3_3:-57298891 Msa0460240:CDS
AATCTTCATCTATTTGAGAA+GGG 0.526830 3_3:+57298699 None:intergenic
GAATTCCTTTCGCATGGCAA+AGG 0.529925 3_3:+57300637 None:intergenic
TCGCATGGCAAAGGCTTGGT+AGG 0.536718 3_3:+57300646 None:intergenic
GGCAATTGGATGAGAAGCTA+TGG 0.540875 3_3:+57299106 None:intergenic
TTTGATAAGGAGTGGTTGGA+TGG 0.543229 3_3:-57298404 Msa0460240:CDS
CCAACACACTACGCGTTTGG+AGG 0.544005 3_3:+57298489 None:intergenic
ATGGAACAACAACGTCCACT+TGG 0.544882 3_3:-57299525 Msa0460240:CDS
CCTCCAAACGCGTAGTGTGT+TGG 0.546693 3_3:-57298489 Msa0460240:CDS
GAAATTGAATTCCTTTCGCA+TGG 0.547929 3_3:+57300631 None:intergenic
TTCCTTGGTGACATGCTGCT+GGG 0.548387 3_3:+57298313 None:intergenic
GAGGAAATATTTGTAAGTGA+GGG 0.550814 3_3:-57300720 Msa0460240:CDS
AGTAGCACTAATGAGGATCA+AGG 0.552074 3_3:-57299029 Msa0460240:intron
GTGGTTTCAACATCAACAGC+AGG 0.553569 3_3:-57300564 Msa0460240:CDS
TGTCTTTCCAGTCTCCATAT+GGG 0.554599 3_3:-57300793 Msa0460240:CDS
CCTTTCGCATGGCAAAGGCT+TGG 0.554637 3_3:+57300642 None:intergenic
AACCCGTGTCCTGATGGTGC+TGG 0.558128 3_3:+57299871 None:intergenic
AAATTGAGATGCAGTAGAAG+AGG 0.561173 3_3:+57298823 None:intergenic
GAAGTCAACCCGTGTCCTGA+TGG 0.562022 3_3:+57299865 None:intergenic
TTCTTCTTTGGTTGTCACTG+GGG 0.562722 3_3:-57298672 Msa0460240:CDS
AAGAATAAAATACCTTCAGA+AGG 0.564413 3_3:+57298791 None:intergenic
TTTCCTACAAAGCCTTCTGA+AGG 0.570910 3_3:-57298803 Msa0460240:intron
GGAAACTAGTAGCACTAATG+AGG 0.571990 3_3:-57299036 Msa0460240:CDS
TTGTGCTTTGACAAGTCTCA+AGG 0.577464 3_3:-57301195 Msa0460240:CDS
CAGACACCTTATTATAGAAG+TGG 0.584589 3_3:+57300974 None:intergenic
AATTGAGATGCAGTAGAAGA+GGG 0.592863 3_3:+57298824 None:intergenic
TATAGATTATGAATTGTACA+AGG 0.594273 3_3:-57299959 Msa0460240:intron
CCAAGCCTTTGCCATGCGAA+AGG 0.595394 3_3:-57300642 Msa0460240:CDS
ACTGATTGCATCTCTTGTTG+AGG 0.600546 3_3:+57299697 None:intergenic
GCTGCTTTAAGTGCTCCTCT+CGG 0.608968 3_3:-57298161 Msa0460240:CDS
GTAGCATCAGTTTGTCCAAG+TGG 0.614637 3_3:+57299510 None:intergenic
TAAAGTGTGTACCGTAGCCA+CGG 0.619372 3_3:+57300529 None:intergenic
AGGACACGGGTTGACTTCAG+AGG 0.621924 3_3:-57299860 Msa0460240:intron
CTCCAGCACCATCAGGACAC+GGG 0.625045 3_3:-57299873 Msa0460240:CDS
GAATTGAAGGATGCTTAACA+AGG 0.637134 3_3:+57298585 None:intergenic
GCTCCAGCACCATCAGGACA+CGG 0.639857 3_3:-57299874 Msa0460240:CDS
CAATTACGTAATGAGTCCAA+AGG 0.665219 3_3:-57299916 Msa0460240:CDS
TCATTGAGTAGCAGATACAA+GGG 0.665656 3_3:-57298548 Msa0460240:CDS
TTCCCAGCAGCATGTCACCA+AGG 0.668840 3_3:-57298315 Msa0460240:CDS
TGCTGTTGATGTTGAAACCA+CGG 0.671157 3_3:+57300566 None:intergenic
GAGCTTCATTACAAGTATCG+TGG 0.672204 3_3:+57299893 None:intergenic
TCAACATCTTGTGCACTAAG+GGG 0.681437 3_3:+57299074 None:intergenic
ATTCTCAAAGTAAACAACTG+TGG 0.682081 3_3:+57300951 None:intergenic
AAGATAGTCTAATAGCCGAG+AGG 0.706213 3_3:+57298146 None:intergenic
GTAACTCAACAAATTCAGAG+TGG 0.723822 3_3:+57298450 None:intergenic
GCAGGCTTCAGATATGACCG+TGG 0.767418 3_3:-57300546 Msa0460240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTATATTTCTATATAAAATA+TGG - chr3_3:57299222-57299241 Msa0460240:intron 10.0%
!! ATATTGAATATGTATATATT+TGG + chr3_3:57299755-57299774 None:intergenic 10.0%
!! ATCTAATAAATTATACCATT+TGG - chr3_3:57299007-57299026 Msa0460240:intron 15.0%
!! AAAAAAAACTTGTATTAAAC+AGG + chr3_3:57299098-57299117 None:intergenic 15.0%
!!! TTTTTAATCTTGTAAGGTTT+TGG + chr3_3:57298333-57298352 None:intergenic 20.0%
!! AAATTATACCATTTGGTTAA+AGG - chr3_3:57299014-57299033 Msa0460240:intron 20.0%
!! ATTTATATCCTTTAACCAAA+TGG + chr3_3:57299025-57299044 None:intergenic 20.0%
!!! ACTTTTTAAGTATGAAAAAG+TGG - chr3_3:57299153-57299172 Msa0460240:intron 20.0%
!!! CTTTTTAAGTATGAAAAAGT+GGG - chr3_3:57299154-57299173 Msa0460240:intron 20.0%
!! TTCTATATAAAATATGGAAG+TGG - chr3_3:57299228-57299247 Msa0460240:intron 20.0%
!! TATAGATTATGAATTGTACA+AGG - chr3_3:57299401-57299420 Msa0460240:intron 20.0%
!!! CAAATTACTTTTGAATTTGT+TGG + chr3_3:57299699-57299718 None:intergenic 20.0%
!! CAAATTCAAAAGTAATTTGA+AGG - chr3_3:57299700-57299719 Msa0460240:CDS 20.0%
!!! ATTACATTATTTTCTTGAGA+AGG + chr3_3:57299883-57299902 None:intergenic 20.0%
!!! ATTTGAATTTTGTAGAAAGA+AGG - chr3_3:57300217-57300236 Msa0460240:intron 20.0%
!!! CTTTAACTTCAAAATGAAAA+GGG + chr3_3:57300399-57300418 None:intergenic 20.0%
!!! ACTTTAACTTCAAAATGAAA+AGG + chr3_3:57300400-57300419 None:intergenic 20.0%
! ACAAAAGATATCTTCTACAT+TGG + chr3_3:57298200-57298219 None:intergenic 25.0%
!! AGGTTTGGAATTCATTTATT+TGG - chr3_3:57298252-57298271 Msa0460240:CDS 25.0%
!! TGGAGAGAAAATGAATTTTT+GGG + chr3_3:57298313-57298332 None:intergenic 25.0%
!! TTGGAGAGAAAATGAATTTT+TGG + chr3_3:57298314-57298333 None:intergenic 25.0%
!! GCTTGATTTTTAATCTTGTA+AGG + chr3_3:57298339-57298358 None:intergenic 25.0%
!! TTTTCTCCACTTCTATAATA+AGG - chr3_3:57298380-57298399 Msa0460240:CDS 25.0%
! CTTTGTAGACATAAAATTTG+AGG + chr3_3:57298491-57298510 None:intergenic 25.0%
! AATACTACAACTTTCAGATT+TGG + chr3_3:57298688-57298707 None:intergenic 25.0%
!!! TTCTAGACGAATTTTAAAAG+GGG + chr3_3:57298962-57298981 None:intergenic 25.0%
!!! CTTCTAGACGAATTTTAAAA+GGG + chr3_3:57298963-57298982 None:intergenic 25.0%
!! TCTTCTAGACGAATTTTAAA+AGG + chr3_3:57298964-57298983 None:intergenic 25.0%
!!! CAAGTTTTTTTTTTTCCTCT+AGG - chr3_3:57299106-57299125 Msa0460240:CDS 25.0%
! TATTATGAATCCAATCATCA+AGG - chr3_3:57299552-57299571 Msa0460240:intron 25.0%
!! ATTTTTGATGCAGAAAGAAA+TGG - chr3_3:57299599-57299618 Msa0460240:intron 25.0%
! GAATATGTATATATTTGGAG+AGG + chr3_3:57299750-57299769 None:intergenic 25.0%
! AATTCATATGTTCTTACTAC+AGG - chr3_3:57299792-57299811 Msa0460240:intron 25.0%
!! ATTTTATGCTATCAGTTGAA+GGG - chr3_3:57299977-57299996 Msa0460240:intron 25.0%
! TTGAAAACGTGTAAAAATGA+GGG + chr3_3:57300107-57300126 None:intergenic 25.0%
!! TTTTTACACGTTTTCAACTT+AGG - chr3_3:57300110-57300129 Msa0460240:intron 25.0%
!! TATTGAGGATCAATTTTCTA+AGG - chr3_3:57300484-57300503 Msa0460240:intron 25.0%
! AAGAATAAAATACCTTCAGA+AGG + chr3_3:57300572-57300591 None:intergenic 25.0%
! TTATTCTTTCCTATACTTTC+AGG - chr3_3:57300635-57300654 Msa0460240:CDS 25.0%
! TATTCTTTCCTATACTTTCA+GGG - chr3_3:57300636-57300655 Msa0460240:CDS 25.0%
! AATCTTCATCTATTTGAGAA+GGG + chr3_3:57300664-57300683 None:intergenic 25.0%
! AAATCTTCATCTATTTGAGA+AGG + chr3_3:57300665-57300684 None:intergenic 25.0%
!! TGAAGATTTAAGTTCTTCTT+TGG - chr3_3:57300676-57300695 Msa0460240:CDS 25.0%
!!! TTTTGAGAGAATTGTAAATC+AGG + chr3_3:57301004-57301023 None:intergenic 25.0%
!! ACACATTTTTAATCAACATG+TGG - chr3_3:57301093-57301112 Msa0460240:CDS 25.0%
ATTCTCAAAGTAAACAACTG+TGG + chr3_3:57298412-57298431 None:intergenic 30.0%
CAATAATATGCTTCAACTCT+TGG + chr3_3:57298444-57298463 None:intergenic 30.0%
GCATATTATTGAAGATGACT+TGG - chr3_3:57298453-57298472 Msa0460240:CDS 30.0%
! ACAACAACTGTATTTAGCTT+CGG + chr3_3:57298523-57298542 None:intergenic 30.0%
AGAGGAAATATTTGTAAGTG+AGG - chr3_3:57298639-57298658 Msa0460240:CDS 30.0%
GAGGAAATATTTGTAAGTGA+GGG - chr3_3:57298640-57298659 Msa0460240:CDS 30.0%
! TGACAATTTAAAGTCGAAAG+TGG - chr3_3:57299311-57299330 Msa0460240:intron 30.0%
! CATTTTATGCTATCAGTTGA+AGG - chr3_3:57299976-57299995 Msa0460240:intron 30.0%
!! ATTCCTTGTTGTTTCTGAAA+TGG + chr3_3:57300041-57300060 None:intergenic 30.0%
TGAAAACGTGTAAAAATGAG+GGG + chr3_3:57300106-57300125 None:intergenic 30.0%
GTTGAAAACGTGTAAAAATG+AGG + chr3_3:57300108-57300127 None:intergenic 30.0%
TGTTGATGTTAAAATCTGTC+AGG - chr3_3:57300303-57300322 Msa0460240:intron 30.0%
CATTTAGAGAAACTGACAAA+AGG + chr3_3:57300436-57300455 None:intergenic 30.0%
GAAAGTAAGCTCAAATATTG+AGG - chr3_3:57300469-57300488 Msa0460240:intron 30.0%
ATTCTTTCCTATACTTTCAG+GGG - chr3_3:57300637-57300656 Msa0460240:CDS 30.0%
! AGCATCCTTCAATTCTTTTA+AGG - chr3_3:57300783-57300802 Msa0460240:CDS 30.0%
! GCATCCTTCAATTCTTTTAA+GGG - chr3_3:57300784-57300803 Msa0460240:CDS 30.0%
AAATGCAATGCAAAAGCTAT+TGG - chr3_3:57301021-57301040 Msa0460240:CDS 30.0%
!!! AGCACAAGTTTTAGAAACTA+AGG - chr3_3:57301177-57301196 Msa0460240:CDS 30.0%
AATGAACAGCAAATGAGCTT+AGG - chr3_3:57298232-57298251 Msa0460240:CDS 35.0%
! ACAAAAAGGCATGTCATCAT+TGG + chr3_3:57298286-57298305 None:intergenic 35.0%
! AATGATGACATGCCTTTTTG+TGG - chr3_3:57298285-57298304 Msa0460240:CDS 35.0%
! ATGATGACATGCCTTTTTGT+GGG - chr3_3:57298286-57298305 Msa0460240:CDS 35.0%
!!! AATTTTTGGGACCCACAAAA+AGG + chr3_3:57298300-57298319 None:intergenic 35.0%
CAGACACCTTATTATAGAAG+TGG + chr3_3:57298389-57298408 None:intergenic 35.0%
GAAATTGAATTCCTTTCGCA+TGG + chr3_3:57298732-57298751 None:intergenic 35.0%
ATCATGCTGTAAACTTACCA+AGG - chr3_3:57298888-57298907 Msa0460240:CDS 35.0%
CTTACCAAGGACTAGATTTA+AGG - chr3_3:57298901-57298920 Msa0460240:CDS 35.0%
TCATCCTTAAATCTAGTCCT+TGG + chr3_3:57298908-57298927 None:intergenic 35.0%
! AATTGAAGCACCTAAAGTAG+AGG - chr3_3:57299045-57299064 Msa0460240:CDS 35.0%
ATCATGCATACCTCTACTTT+AGG + chr3_3:57299058-57299077 None:intergenic 35.0%
TATGAAAAAGTGGGATGTTG+CGG - chr3_3:57299163-57299182 Msa0460240:intron 35.0%
! GTCATCTTCAAGTTCAAAGA+TGG + chr3_3:57299295-57299314 None:intergenic 35.0%
CAATTACGTAATGAGTCCAA+AGG - chr3_3:57299444-57299463 Msa0460240:intron 35.0%
! AAATACACTGCCTTGATGAT+TGG + chr3_3:57299565-57299584 None:intergenic 35.0%
ATATCCAAGTGATCTTCACA+TGG + chr3_3:57299726-57299745 None:intergenic 35.0%
GTCGATGAATGAACAAGAAA+TGG - chr3_3:57299816-57299835 Msa0460240:intron 35.0%
!! TTAGCTTTACATGCACAATG+AGG + chr3_3:57299915-57299934 None:intergenic 35.0%
TTAAGAGCAGCTAACTGTAT+AGG + chr3_3:57300070-57300089 None:intergenic 35.0%
GTTAGCTGCTCTTAAACATA+AGG - chr3_3:57300075-57300094 Msa0460240:intron 35.0%
ATCAACATCTTGTGCACTAA+GGG + chr3_3:57300290-57300309 None:intergenic 35.0%
TAGAGAAACTGACAAAAGGT+GGG + chr3_3:57300432-57300451 None:intergenic 35.0%
TTAGAGAAACTGACAAAAGG+TGG + chr3_3:57300433-57300452 None:intergenic 35.0%
AATTGAGATGCAGTAGAAGA+GGG + chr3_3:57300539-57300558 None:intergenic 35.0%
AAATTGAGATGCAGTAGAAG+AGG + chr3_3:57300540-57300559 None:intergenic 35.0%
GAATTGAAGGATGCTTAACA+AGG + chr3_3:57300778-57300797 None:intergenic 35.0%
GTGTCCCTTAAAAGAATTGA+AGG + chr3_3:57300791-57300810 None:intergenic 35.0%
TTCATTGAGTAGCAGATACA+AGG - chr3_3:57300811-57300830 Msa0460240:CDS 35.0%
TCATTGAGTAGCAGATACAA+GGG - chr3_3:57300812-57300831 Msa0460240:CDS 35.0%
GGAATTTCAATAGCTCAGAT+AGG + chr3_3:57300853-57300872 None:intergenic 35.0%
GTAACTCAACAAATTCAGAG+TGG + chr3_3:57300913-57300932 None:intergenic 35.0%
!!! TAGCAGATGTGGTTTTGATA+AGG - chr3_3:57300943-57300962 Msa0460240:CDS 35.0%
ACGAATATCTTCAACTTCCT+TGG + chr3_3:57301065-57301084 None:intergenic 35.0%
TTGTGCTTTGACAAGTCTCA+AGG - chr3_3:57298165-57298184 Msa0460240:CDS 40.0%
ACAGCAAATGAGCTTAGGTT+TGG - chr3_3:57298237-57298256 Msa0460240:CDS 40.0%
ATGTCTTTCCAGTCTCCATA+TGG - chr3_3:57298566-57298585 Msa0460240:CDS 40.0%
TGTCTTTCCAGTCTCCATAT+GGG - chr3_3:57298567-57298586 Msa0460240:CDS 40.0%
TTCAGAAAGCTCTTCCCATA+TGG + chr3_3:57298584-57298603 None:intergenic 40.0%
GGAAGAGCTTTCTGAACTAA+AGG - chr3_3:57298588-57298607 Msa0460240:CDS 40.0%
AAGAGAAGCAGATGAGTTAG+AGG - chr3_3:57298621-57298640 Msa0460240:CDS 40.0%
GAATTGTCAAAAACTCTCCG+TGG - chr3_3:57298777-57298796 Msa0460240:intron 40.0%
TGCTGTTGATGTTGAAACCA+CGG + chr3_3:57298797-57298816 None:intergenic 40.0%
GTATGCATGATAAGAGCTTG+TGG - chr3_3:57299067-57299086 Msa0460240:CDS 40.0%
CTCTAGGTCAAGTAGTTTAG+CGG - chr3_3:57299122-57299141 Msa0460240:CDS 40.0%
ATGAAAAAGTGGGATGTTGC+GGG - chr3_3:57299164-57299183 Msa0460240:intron 40.0%
! ATTACAAGTATCGTGGCCTT+TGG + chr3_3:57299463-57299482 None:intergenic 40.0%
! GAGCTTCATTACAAGTATCG+TGG + chr3_3:57299470-57299489 None:intergenic 40.0%
ACTGATTGCATCTCTTGTTG+AGG + chr3_3:57299666-57299685 None:intergenic 40.0%
CGACCATTTCAGAAACAACA+AGG - chr3_3:57300035-57300054 Msa0460240:intron 40.0%
TCAACATCTTGTGCACTAAG+GGG + chr3_3:57300289-57300308 None:intergenic 40.0%
CATCAACATCTTGTGCACTA+AGG + chr3_3:57300291-57300310 None:intergenic 40.0%
GGAAACTAGTAGCACTAATG+AGG - chr3_3:57300324-57300343 Msa0460240:intron 40.0%
AGTAGCACTAATGAGGATCA+AGG - chr3_3:57300331-57300350 Msa0460240:intron 40.0%
TTTCCTACAAAGCCTTCTGA+AGG - chr3_3:57300557-57300576 Msa0460240:CDS 40.0%
! ATACCTTCAGAAGGCTTTGT+AGG + chr3_3:57300563-57300582 None:intergenic 40.0%
AGTTCTTCTTTGGTTGTCAC+TGG - chr3_3:57300686-57300705 Msa0460240:CDS 40.0%
GTTCTTCTTTGGTTGTCACT+GGG - chr3_3:57300687-57300706 Msa0460240:CDS 40.0%
TTCTTCTTTGGTTGTCACTG+GGG - chr3_3:57300688-57300707 Msa0460240:CDS 40.0%
!! TCTAGTCTCCAAGAAGCATT+TGG - chr3_3:57300721-57300740 Msa0460240:CDS 40.0%
CTCAATAGCCAAATGCTTCT+TGG + chr3_3:57300732-57300751 None:intergenic 40.0%
CTACAAGATGTTAGCAGATG+TGG - chr3_3:57300932-57300951 Msa0460240:CDS 40.0%
!!! GATGTGGTTTTGATAAGGAG+TGG - chr3_3:57300948-57300967 Msa0460240:CDS 40.0%
!!! TGGTTTTGATAAGGAGTGGT+TGG - chr3_3:57300952-57300971 Msa0460240:CDS 40.0%
TTTGATAAGGAGTGGTTGGA+TGG - chr3_3:57300956-57300975 Msa0460240:CDS 40.0%
!!! GACATCTTCTGAAGCTGTTT+TGG - chr3_3:57301135-57301154 Msa0460240:CDS 40.0%
GAATTCCTTTCGCATGGCAA+AGG + chr3_3:57298726-57298745 None:intergenic 45.0%
GTGGTTTCAACATCAACAGC+AGG - chr3_3:57298796-57298815 Msa0460240:intron 45.0%
TTCAGATATGACCGTGGCTA+CGG - chr3_3:57298820-57298839 Msa0460240:CDS 45.0%
TAAAGTGTGTACCGTAGCCA+CGG + chr3_3:57298834-57298853 None:intergenic 45.0%
TGCATGATAAGAGCTTGTGG+AGG - chr3_3:57299070-57299089 Msa0460240:CDS 45.0%
GCATGATAAGAGCTTGTGGA+GGG - chr3_3:57299071-57299090 Msa0460240:CDS 45.0%
CGCTAAACTACTTGACCTAG+AGG + chr3_3:57299124-57299143 None:intergenic 45.0%
AGCTCAGTACATCTGTTTGC+AGG + chr3_3:57299204-57299223 None:intergenic 45.0%
AAGGCCATGTGAAGATCACT+TGG - chr3_3:57299719-57299738 Msa0460240:CDS 45.0%
ATGGAACAACAACGTCCACT+TGG - chr3_3:57299835-57299854 Msa0460240:intron 45.0%
GTAGCATCAGTTTGTCCAAG+TGG + chr3_3:57299853-57299872 None:intergenic 45.0%
GCTTTACATGCACAATGAGG+TGG + chr3_3:57299912-57299931 None:intergenic 45.0%
GGCAATTGGATGAGAAGCTA+TGG + chr3_3:57300257-57300276 None:intergenic 45.0%
!! AGGGGCTTTGTTATGGCAAT+TGG + chr3_3:57300271-57300290 None:intergenic 45.0%
!! TGCACTAAGGGGCTTTGTTA+TGG + chr3_3:57300278-57300297 None:intergenic 45.0%
TAGCTCAGATAGGCAGTTGT+AGG + chr3_3:57300843-57300862 None:intergenic 45.0%
CGTAGTGTGTTGGATGTGTT+GGG - chr3_3:57300881-57300900 Msa0460240:CDS 45.0%
!!! TATGAATTTTTATTTTTTAT+AGG + chr3_3:57300181-57300200 None:intergenic 5.0%
AGCTCTTCCCATATGGAGAC+TGG + chr3_3:57298577-57298596 None:intergenic 50.0%
AAAGTGGGATGTTGCGGGTT+CGG - chr3_3:57299169-57299188 Msa0460240:intron 50.0%
CATCTGTTTGCAGGAGAGCA+GGG + chr3_3:57299195-57299214 None:intergenic 50.0%
ACATCTGTTTGCAGGAGAGC+AGG + chr3_3:57299196-57299215 None:intergenic 50.0%
AATGAAGCTCCAGCACCATC+AGG - chr3_3:57299480-57299499 Msa0460240:intron 50.0%
! GAAGGGTCCCCTGAAAGTAT+AGG + chr3_3:57300647-57300666 None:intergenic 50.0%
CATCCAACACACTACGCGTT+TGG + chr3_3:57300877-57300896 None:intergenic 50.0%
GCGTAGTGTGTTGGATGTGT+TGG - chr3_3:57300880-57300899 Msa0460240:CDS 50.0%
! TTCCTTGGTGACATGCTGCT+GGG + chr3_3:57301050-57301069 None:intergenic 50.0%
! GCTGCTTTAAGTGCTCCTCT+CGG - chr3_3:57301199-57301218 Msa0460240:CDS 50.0%
! TCGCATGGCAAAGGCTTGGT+AGG + chr3_3:57298717-57298736 None:intergenic 55.0%
CCTTTCGCATGGCAAAGGCT+TGG + chr3_3:57298721-57298740 None:intergenic 55.0%
CCAAGCCTTTGCCATGCGAA+AGG - chr3_3:57298718-57298737 Msa0460240:intron 55.0%
GCAGGCTTCAGATATGACCG+TGG - chr3_3:57298814-57298833 Msa0460240:CDS 55.0%
GAAGTCAACCCGTGTCCTGA+TGG + chr3_3:57299498-57299517 None:intergenic 55.0%
! AGGACACGGGTTGACTTCAG+AGG - chr3_3:57299500-57299519 Msa0460240:CDS 55.0%
CCAACACACTACGCGTTTGG+AGG + chr3_3:57300874-57300893 None:intergenic 55.0%
CCTCCAAACGCGTAGTGTGT+TGG - chr3_3:57300871-57300890 Msa0460240:CDS 55.0%
TTCCCAGCAGCATGTCACCA+AGG - chr3_3:57301045-57301064 Msa0460240:CDS 55.0%
! CTTCCTTGGTGACATGCTGC+TGG + chr3_3:57301051-57301070 None:intergenic 55.0%
GCTCCAGCACCATCAGGACA+CGG - chr3_3:57299486-57299505 Msa0460240:CDS 60.0%
CTCCAGCACCATCAGGACAC+GGG - chr3_3:57299487-57299506 Msa0460240:CDS 60.0%
! AACCCGTGTCCTGATGGTGC+TGG + chr3_3:57299492-57299511 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 57298154 57301228 57298154 ID=Msa0460240;Name=Msa0460240
chr3_3 mRNA 57298154 57301228 57298154 ID=Msa0460240-mRNA-1;Parent=Msa0460240;Name=Msa0460240-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0|0|1|1|1|7|0|604
chr3_3 exon 57300541 57301228 57300541 ID=Msa0460240-mRNA-1:exon:11662;Parent=Msa0460240-mRNA-1
chr3_3 exon 57299861 57299976 57299861 ID=Msa0460240-mRNA-1:exon:11661;Parent=Msa0460240-mRNA-1
chr3_3 exon 57299672 57299770 57299672 ID=Msa0460240-mRNA-1:exon:11660;Parent=Msa0460240-mRNA-1
chr3_3 exon 57299485 57299568 57299485 ID=Msa0460240-mRNA-1:exon:11659;Parent=Msa0460240-mRNA-1
chr3_3 exon 57299030 57299150 57299030 ID=Msa0460240-mRNA-1:exon:11658;Parent=Msa0460240-mRNA-1
chr3_3 exon 57298804 57298938 57298804 ID=Msa0460240-mRNA-1:exon:11657;Parent=Msa0460240-mRNA-1
chr3_3 exon 57298154 57298725 57298154 ID=Msa0460240-mRNA-1:exon:11656;Parent=Msa0460240-mRNA-1
chr3_3 CDS 57300541 57301228 57300541 ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1
chr3_3 CDS 57299861 57299976 57299861 ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1
chr3_3 CDS 57299672 57299770 57299672 ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1
chr3_3 CDS 57299485 57299568 57299485 ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1
chr3_3 CDS 57299030 57299150 57299030 ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1
chr3_3 CDS 57298804 57298938 57298804 ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1
chr3_3 CDS 57298154 57298725 57298154 ID=Msa0460240-mRNA-1:cds;Parent=Msa0460240-mRNA-1
Gene Sequence

>Msa0460240

ATGAAACATTTTTGTGCTTTGACAAGTCTCAAGGTAGATAACTCCAATGTAGAAGATATCTTTTGTCTGAATGAAATAAATGAACAGCAAATGAGCTTAGGTTTGGAATTCATTTATTTGGATGTTCTACCAATGATGACATGCCTTTTTGTGGGTCCCAAAAATTCATTTTCTCTCCAAAACCTTACAAGATTAAAAATCAAGCGATGTGAAAAATTGAAAATTGTTTTCTCCACTTCTATAATAAGGTGTCTGCCACAGTTGTTTACTTTGAGAATTGAAGAATGCCAAGAGTTGAAGCATATTATTGAAGATGACTTGGAGAATAAAAAATCCTCAAATTTTATGTCTACAAAGACATGCTTTCCGAAGCTAAATACAGTTGTTGTAGCAAAGTGCAACAAGTTGAAATATGTCTTTCCAGTCTCCATATGGGAAGAGCTTTCTGAACTAAAGGCTCTAATGATAAGAGAAGCAGATGAGTTAGAGGAAATATTTGTAAGTGAGGGTGATGATGATAAAGTAAATATTCCAAATCTGAAAGTTGTAGTATTTGTCAACCTACCAAGCCTTTGCCATGCGAAAGGAATTCAATTTCAAGCTGTAAAACATCATTTCGTACAGAATTGTCAAAAACTCTCCGTGGTTTCAACATCAACAGCAGGCTTCAGATATGACCGTGGCTACGATTATGAATTGTACAAGGATACGATGAAGCTAGTCAAGCAATTACGTAATGAGTCCAAAGGCCACGATACTTGTAATGAAGCTCCAGCACCATCAGGACACGGGTTGACTTCAGAGAAAGAAATGGAACAAACACTAGAGACAAAGCATGAATTTGTTGAAAATGTTCCTCAACAAGAGATGCAATCAGTAGCAATAATACCAACAAATTCAAAAGAGTCGATGAATGAACAAGAAATGGAACAACAACGTCCACTTGGACAAACTGATGCTACTGTCAAACCTTCTCAAGAAAATAATAAAGAAGGTGATGAAGAAAGAGCCATAGCTTCTCATCCAATTGCCATAACAAAGCCCCTTAGTGCACAAGATGTTGATGTTAAAATCTGTCAGGAAACTAGTAGCACTAATGAGGATCAAGTTTCTCTAAATGATGAAGTTGTCATGAAAGTAAGCTCAAATATTGAGGATCAATTTTCTAAGGATGATGACATATTAGTTTCAAAATCAAGACCCTCTTCTACTGCATCTCAATTTCCTACAAAGCCTTCTGAAGGGGACCCTTCTCAAATAGATGAAGATTTAAGTTCTTCTTTGGTTGTCACTGGGGAGCTTGAGAGTCTAGTCTCCAAGAAGCATTTGGCTATTGAGAACTTGTCTTTGTTGACTGATTTCCTTGTTAAGCATCCTTCAATTCTTTTAAGGGACACTTCATTGAGTAGCAGATACAAGGGTTATGCCTACAACTGCCTATCTGAGCTATTGAAATTCCTCCAAACGCGTAGTGTGTTGGATGTGTTGGGTTCAAGCCACTCTGAATTTGTTGAGTTACTACAAGATGTTAGCAGATGTGGTTTTGATAAGGAGTGGTTGGATGGTGTTGAAAAGCGCGCTTTGTTTCCTGATTTACAATTCTCTCAAAATGCAATGCAAAAGCTATTGGATTCCCAGCAGCATGTCACCAAGGAAGTTGAAGATATTCGTTTGAAGATACACATTTTTAATCAACATGTGGATGATCTTAAGCATCAATTGACATCTTCTGAAGCTGTTTTGGAGACAATCATTCAACAGAAAGCACAAGTTTTAGAAACTAAGGCTGCTTTAAGTGCTCCTCTCGGCTATTAG

Protein sequence

>Msa0460240

MKHFCALTSLKVDNSNVEDIFCLNEINEQQMSLGLEFIYLDVLPMMTCLFVGPKNSFSLQNLTRLKIKRCEKLKIVFSTSIIRCLPQLFTLRIEECQELKHIIEDDLENKKSSNFMSTKTCFPKLNTVVVAKCNKLKYVFPVSIWEELSELKALMIREADELEEIFVSEGDDDKVNIPNLKVVVFVNLPSLCHAKGIQFQAVKHHFVQNCQKLSVVSTSTAGFRYDRGYDYELYKDTMKLVKQLRNESKGHDTCNEAPAPSGHGLTSEKEMEQTLETKHEFVENVPQQEMQSVAIIPTNSKESMNEQEMEQQRPLGQTDATVKPSQENNKEGDEERAIASHPIAITKPLSAQDVDVKICQETSSTNEDQVSLNDEVVMKVSSNIEDQFSKDDDILVSKSRPSSTASQFPTKPSEGDPSQIDEDLSSSLVVTGELESLVSKKHLAIENLSLLTDFLVKHPSILLRDTSLSSRYKGYAYNCLSELLKFLQTRSVLDVLGSSHSEFVELLQDVSRCGFDKEWLDGVEKRALFPDLQFSQNAMQKLLDSQQHVTKEVEDIRLKIHIFNQHVDDLKHQLTSSEAVLETIIQQKAQVLETKAALSAPLGY*