Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367610 | XP_024634180.1 | 62.412 | 713 | 150 | 10 | 3 | 604 | 1079 | 1784 | 0.0 | 801 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367610 | A0A396IU65 | 63.905 | 676 | 149 | 11 | 1 | 604 | 1235 | 1887 | 0.0 | 780 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0367610 | Msa0460240 | 0.800008 | 1.762765e-48 | -8.615850e-47 |
| Msa0367610 | Msa1009000 | 0.801367 | 9.310975e-49 | -8.615850e-47 |
| Msa0304990 | Msa0367610 | 0.823881 | 1.090570e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0367610 | MtrunA17_Chr3g0107931 | 63.905 | 676 | 149 | 11 | 1 | 604 | 1235 | 1887 | 0.0 | 780 |
| Msa0367610 | MtrunA17_Chr3g0091861 | 57.320 | 724 | 164 | 10 | 1 | 595 | 1157 | 1864 | 0.0 | 733 |
| Msa0367610 | MtrunA17_Chr3g0108821 | 61.404 | 627 | 189 | 12 | 1 | 604 | 1206 | 1802 | 0.0 | 674 |
| Msa0367610 | MtrunA17_Chr3g0108151 | 56.393 | 610 | 210 | 11 | 3 | 604 | 982 | 1543 | 0.0 | 574 |
| Msa0367610 | MtrunA17_Chr3g0108811 | 57.549 | 563 | 186 | 10 | 62 | 604 | 1401 | 1930 | 0.0 | 566 |
| Msa0367610 | MtrunA17_Chr3g0108811 | 56.164 | 219 | 83 | 4 | 1 | 213 | 1227 | 1438 | 7.50e-62 | 222 |
| Msa0367610 | MtrunA17_Chr3g0108071 | 51.893 | 634 | 212 | 11 | 3 | 574 | 359 | 961 | 0.0 | 542 |
| Msa0367610 | MtrunA17_Chr3g0108171 | 78.492 | 358 | 55 | 1 | 269 | 604 | 1610 | 1967 | 2.81e-175 | 545 |
| Msa0367610 | MtrunA17_Chr3g0108171 | 49.644 | 562 | 153 | 12 | 3 | 448 | 1079 | 1626 | 8.66e-142 | 453 |
| Msa0367610 | MtrunA17_Chr3g0105521 | 48.864 | 616 | 247 | 13 | 24 | 604 | 1023 | 1605 | 3.40e-152 | 477 |
| Msa0367610 | MtrunA17_Chr3g0105521 | 27.919 | 197 | 126 | 5 | 4 | 191 | 638 | 827 | 4.60e-11 | 66.2 |
| Msa0367610 | MtrunA17_Chr3g0108111 | 53.778 | 450 | 138 | 9 | 3 | 388 | 160 | 603 | 4.88e-138 | 415 |
| Msa0367610 | MtrunA17_Chr3g0108091 | 48.263 | 518 | 184 | 9 | 119 | 574 | 3 | 498 | 6.95e-133 | 398 |
| Msa0367610 | MtrunA17_Chr3g0108011 | 67.052 | 346 | 77 | 6 | 1 | 329 | 1244 | 1569 | 9.28e-132 | 423 |
| Msa0367610 | MtrunA17_Chr3g0107261 | 62.162 | 296 | 104 | 2 | 316 | 604 | 105 | 399 | 4.51e-117 | 353 |
| Msa0367610 | MtrunA17_Chr3g0097011 | 65.263 | 285 | 78 | 3 | 320 | 604 | 134 | 397 | 2.23e-115 | 349 |
| Msa0367610 | MtrunA17_Chr3g0091851 | 42.342 | 555 | 236 | 12 | 62 | 604 | 833 | 1315 | 1.72e-103 | 340 |
| Msa0367610 | MtrunA17_Chr3g0107271 | 68.670 | 233 | 65 | 4 | 1 | 229 | 13 | 241 | 1.84e-102 | 310 |
| Msa0367610 | MtrunA17_Chr2g0304131 | 58.889 | 270 | 99 | 2 | 347 | 604 | 46 | 315 | 1.03e-93 | 290 |
| Msa0367610 | MtrunA17_Chr3g0087641 | 56.631 | 279 | 82 | 2 | 309 | 548 | 69 | 347 | 1.32e-93 | 291 |
| Msa0367610 | MtrunA17_Chr3g0105471 | 62.500 | 248 | 79 | 4 | 362 | 604 | 8 | 246 | 7.98e-90 | 278 |
| Msa0367610 | MtrunA17_Chr3g0105591 | 43.527 | 448 | 153 | 14 | 230 | 604 | 15 | 435 | 3.31e-85 | 272 |
| Msa0367610 | MtrunA17_Chr3g0107641 | 71.053 | 190 | 54 | 1 | 415 | 604 | 4 | 192 | 1.06e-81 | 254 |
| Msa0367610 | MtrunA17_Chr3g0097601 | 61.644 | 219 | 82 | 2 | 1 | 218 | 14 | 231 | 2.55e-81 | 256 |
| Msa0367610 | MtrunA17_Chr3g0105551 | 47.644 | 382 | 115 | 9 | 299 | 604 | 1492 | 1864 | 1.80e-78 | 271 |
| Msa0367610 | MtrunA17_Chr3g0105551 | 54.008 | 237 | 97 | 4 | 7 | 236 | 1125 | 1356 | 2.37e-65 | 233 |
| Msa0367610 | MtrunA17_Chr3g0105551 | 28.426 | 197 | 125 | 5 | 4 | 191 | 756 | 945 | 3.87e-12 | 69.7 |
| Msa0367610 | MtrunA17_Chr3g0096701 | 44.855 | 379 | 166 | 13 | 59 | 412 | 39 | 399 | 1.19e-75 | 256 |
| Msa0367610 | MtrunA17_Chr3g0108761 | 65.625 | 192 | 52 | 1 | 413 | 604 | 3 | 180 | 1.47e-74 | 236 |
| Msa0367610 | MtrunA17_Chr3g0105601 | 58.605 | 215 | 77 | 3 | 24 | 231 | 261 | 470 | 2.59e-69 | 233 |
| Msa0367610 | MtrunA17_Chr3g0105481 | 41.266 | 395 | 178 | 10 | 24 | 391 | 1055 | 1422 | 4.06e-68 | 241 |
| Msa0367610 | MtrunA17_Chr3g0105481 | 29.630 | 189 | 124 | 5 | 4 | 191 | 707 | 887 | 3.93e-11 | 66.6 |
| Msa0367610 | MtrunA17_Chr3g0105501 | 57.426 | 202 | 74 | 4 | 31 | 230 | 1 | 192 | 3.61e-65 | 212 |
| Msa0367610 | MtrunA17_Chr3g0096771 | 49.814 | 269 | 96 | 5 | 348 | 604 | 48 | 289 | 1.15e-64 | 214 |
| Msa0367610 | MtrunA17_Chr3g0107081 | 59.551 | 178 | 60 | 3 | 54 | 231 | 29 | 194 | 1.22e-60 | 201 |
| Msa0367610 | MtrunA17_Chr3g0107171 | 65.854 | 164 | 49 | 2 | 443 | 604 | 225 | 383 | 1.68e-60 | 206 |
| Msa0367610 | MtrunA17_Chr7g0223911 | 65.217 | 138 | 41 | 1 | 467 | 604 | 30 | 160 | 7.29e-52 | 175 |
| Msa0367610 | MtrunA17_Chr2g0288311 | 61.146 | 157 | 33 | 3 | 71 | 226 | 30 | 159 | 1.15e-48 | 167 |
| Msa0367610 | MtrunA17_Chr1g0160951 | 35.897 | 273 | 160 | 4 | 1 | 258 | 1005 | 1277 | 2.36e-42 | 164 |
| Msa0367610 | MtrunA17_Chr7g0229711 | 55.128 | 156 | 47 | 3 | 437 | 592 | 7 | 139 | 2.58e-42 | 149 |
| Msa0367610 | MtrunA17_Chr3g0107201 | 34.641 | 306 | 152 | 9 | 136 | 414 | 2 | 286 | 3.65e-33 | 134 |
| Msa0367610 | MtrunA17_Chr3g0112521 | 83.099 | 71 | 12 | 0 | 519 | 589 | 6 | 76 | 6.08e-33 | 121 |
| Msa0367610 | MtrunA17_Chr3g0109131 | 82.895 | 76 | 13 | 0 | 529 | 604 | 97 | 172 | 1.49e-32 | 123 |
| Msa0367610 | MtrunA17_Chr3g0096801 | 49.640 | 139 | 56 | 3 | 136 | 272 | 2 | 128 | 6.70e-32 | 120 |
| Msa0367610 | MtrunA17_Chr5g0439121 | 30.904 | 343 | 197 | 12 | 7 | 331 | 1294 | 1614 | 2.00e-30 | 127 |
| Msa0367610 | MtrunA17_Chr5g0439121 | 31.034 | 174 | 108 | 4 | 7 | 174 | 975 | 1142 | 2.66e-12 | 70.5 |
| Msa0367610 | MtrunA17_Chr5g0439121 | 25.926 | 270 | 177 | 7 | 56 | 310 | 779 | 1040 | 3.06e-12 | 70.1 |
| Msa0367610 | MtrunA17_Chr3g0100241 | 36.413 | 184 | 105 | 4 | 29 | 203 | 10 | 190 | 3.24e-27 | 109 |
| Msa0367610 | MtrunA17_Chr3g0100261 | 37.433 | 187 | 101 | 5 | 29 | 203 | 1026 | 1208 | 9.63e-22 | 100 |
| Msa0367610 | MtrunA17_Chr5g0443761 | 30.942 | 223 | 138 | 4 | 6 | 214 | 866 | 1086 | 9.40e-20 | 94.0 |
| Msa0367610 | MtrunA17_Chr3g0099591 | 33.155 | 187 | 110 | 5 | 27 | 203 | 1018 | 1199 | 1.07e-18 | 90.9 |
| Msa0367610 | MtrunA17_Chr8g0360991 | 31.638 | 177 | 111 | 4 | 43 | 214 | 1037 | 1208 | 1.14e-16 | 84.3 |
| Msa0367610 | MtrunA17_Chr3g0105491 | 52.500 | 80 | 24 | 2 | 532 | 604 | 1 | 73 | 1.09e-15 | 72.0 |
| Msa0367610 | MtrunA17_Chr3g0106021 | 55.224 | 67 | 30 | 0 | 1 | 67 | 314 | 380 | 1.98e-15 | 78.6 |
| Msa0367610 | MtrunA17_Chr3g0108201 | 40.945 | 127 | 61 | 2 | 337 | 449 | 2 | 128 | 5.71e-15 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 95 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTTGGAATTCATTTATT+TGG | 0.203168 | 3_1:-63303228 | Msa0367610:CDS |
| CTCAACAGCCAAATGCTTCT+TGG | 0.237226 | 3_1:+63298637 | None:intergenic |
| AGCATCCTTCAGTTCTTATA+AGG | 0.245963 | 3_1:-63298583 | Msa0367610:CDS |
| TGAAGATTTAAGTTCTTCTT+TGG | 0.267166 | 3_1:-63298690 | Msa0367610:CDS |
| AATACTACAACTTTCAGATT+TGG | 0.284967 | 3_1:+63302795 | None:intergenic |
| GACATCTTGTGAAGCTGTTT+TGG | 0.309055 | 3_1:-63298231 | Msa0367610:CDS |
| AAGAGAAGCAGATGAGTTAG+AGG | 0.331520 | 3_1:-63302859 | Msa0367610:CDS |
| AAATGCAATGCAAAAGCTAT+TGG | 0.331886 | 3_1:-63298345 | Msa0367610:CDS |
| ATACCTTCAGAAGGCTTTGT+AGG | 0.335900 | 3_1:+63298806 | None:intergenic |
| TGCACTAAGGGGCTTTGTTA+TGG | 0.336287 | 3_1:+63299091 | None:intergenic |
| CTAACACATCCAACACACTA+TGG | 0.343716 | 3_1:+63298486 | None:intergenic |
| AGGGGCTTTGTTATGGCAAT+TGG | 0.352471 | 3_1:+63299098 | None:intergenic |
| CAATAATATGCTTCAACTCT+TGG | 0.355524 | 3_1:+63303039 | None:intergenic |
| GCATCCTTCAGTTCTTATAA+GGG | 0.395381 | 3_1:-63298582 | Msa0367610:CDS |
| ATTACAAGTATCGTGGCCTT+TGG | 0.395839 | 3_1:+63302018 | None:intergenic |
| TTCAGAAAGCTCTTCCCATA+TGG | 0.396261 | 3_1:+63302899 | None:intergenic |
| GTCGATGAATGAACAAGAAA+TGG | 0.403893 | 3_1:-63301662 | Msa0367610:CDS |
| CTTTGTAGACATAAAATTTG+AGG | 0.406734 | 3_1:+63302992 | None:intergenic |
| ATGTCTTTCCAGTCTCCATA+TGG | 0.414858 | 3_1:-63302914 | Msa0367610:CDS |
| ACAAAAGATATCTTCTACAT+TGG | 0.415179 | 3_1:+63303283 | None:intergenic |
| CTTCCTTGGTGACATGCTGC+TGG | 0.419517 | 3_1:+63298318 | None:intergenic |
| GCGTAGATTTCCGTTTGATA+AGG | 0.430944 | 3_1:-63298423 | Msa0367610:CDS |
| TAGCTCTGCTAGGCTGTTGT+AGG | 0.434304 | 3_1:+63298526 | None:intergenic |
| ACAGCAAATGAGCTTAGGTT+TGG | 0.434823 | 3_1:-63303243 | Msa0367610:CDS |
| AGTTCTTCTTTGGTTGTCAC+CGG | 0.441432 | 3_1:-63298680 | Msa0367610:CDS |
| ACGGATCTCTTCAACTTCCT+TGG | 0.442746 | 3_1:+63298304 | None:intergenic |
| CATCCAACACACTATGGGTT+TGG | 0.445633 | 3_1:+63298492 | None:intergenic |
| AATCTTCATATATTTGAGAA+TGG | 0.446045 | 3_1:+63298705 | None:intergenic |
| ACAACAACTGTATTTAGCTT+CGG | 0.448267 | 3_1:+63302960 | None:intergenic |
| ATCAACATCTTGTGCACTAA+GGG | 0.457145 | 3_1:+63299079 | None:intergenic |
| TCTAGTCTCCAAGAAGCATT+TGG | 0.461496 | 3_1:-63298645 | Msa0367610:CDS |
| CATCAACATCTTGTGCACTA+AGG | 0.462508 | 3_1:+63299078 | None:intergenic |
| CATAGTGTGTTGGATGTGTT+AGG | 0.467513 | 3_1:-63298485 | Msa0367610:CDS |
| AATGAACAGCAAATGAGCTT+AGG | 0.469406 | 3_1:-63303248 | Msa0367610:CDS |
| AGAGGAAATATTTGTAAGTG+AGG | 0.478016 | 3_1:-63302841 | Msa0367610:CDS |
| GGCTTTGTTATGGCAATTGG+AGG | 0.484652 | 3_1:+63299101 | None:intergenic |
| TCCAACCACTCCTTATCAAA+CGG | 0.488355 | 3_1:+63298413 | None:intergenic |
| TACATTGAGTAGCAGATACA+AGG | 0.497362 | 3_1:-63298555 | Msa0367610:CDS |
| AGCTCTTCCCATATGGAGAC+TGG | 0.505744 | 3_1:+63302906 | None:intergenic |
| GGAAGAGCTTTCTGAACTAA+AGG | 0.506794 | 3_1:-63302892 | Msa0367610:CDS |
| TCCGTTTGATAAGGAGTGGT+TGG | 0.507525 | 3_1:-63298414 | Msa0367610:CDS |
| GTTCTTCTTTGGTTGTCACC+GGG | 0.510523 | 3_1:-63298679 | Msa0367610:CDS |
| TTCAGATATGACCGTGGCTA+CGG | 0.511167 | 3_1:-63302660 | Msa0367610:intron |
| AATGAAGCTCCAGCACCATC+AGG | 0.511908 | 3_1:-63301998 | Msa0367610:CDS |
| GCATATTATTGAAGATGACT+TGG | 0.515902 | 3_1:-63303027 | Msa0367610:CDS |
| TGTTGATGTTAAAATCTGTC+AGG | 0.521157 | 3_1:-63299063 | Msa0367610:CDS |
| GAAAGTAAGCTCAAATATTG+AGG | 0.522263 | 3_1:-63298897 | Msa0367610:CDS |
| GAATTCCTTTCGCATGGCAA+AGG | 0.529925 | 3_1:+63302757 | None:intergenic |
| TCGCATGGCAAAGGCTTGGT+AGG | 0.536718 | 3_1:+63302766 | None:intergenic |
| CCAACACACTATGGGTTTGG+AGG | 0.537807 | 3_1:+63298495 | None:intergenic |
| GAAATTGAATTCCTTTCGCA+TGG | 0.547929 | 3_1:+63302751 | None:intergenic |
| TTCCTTGGTGACATGCTGCT+GGG | 0.548387 | 3_1:+63298319 | None:intergenic |
| GAGGAAATATTTGTAAGTGA+GGG | 0.550814 | 3_1:-63302840 | Msa0367610:CDS |
| AGTAGCACTAATGAGGATCA+AGG | 0.552074 | 3_1:-63299035 | Msa0367610:intron |
| GTGGTTTCAACATCAACAGC+AGG | 0.553569 | 3_1:-63302684 | Msa0367610:CDS |
| TGTCTTTCCAGTCTCCATAT+GGG | 0.554599 | 3_1:-63302913 | Msa0367610:CDS |
| CCTTTCGCATGGCAAAGGCT+TGG | 0.554637 | 3_1:+63302762 | None:intergenic |
| ATGGAGCAACAACGTCCACT+TGG | 0.555353 | 3_1:-63301643 | Msa0367610:CDS |
| GACTAGACTCTCAAGCTCCC+CGG | 0.555603 | 3_1:+63298661 | None:intergenic |
| GGCAATTGGAGGAGAAGCTA+TGG | 0.556480 | 3_1:+63299112 | None:intergenic |
| AACCCGTGTCCTGATGGTGC+TGG | 0.558128 | 3_1:+63301989 | None:intergenic |
| TAACACATCCAACACACTAT+GGG | 0.560461 | 3_1:+63298487 | None:intergenic |
| GAAGTCAACCCGTGTCCTGA+TGG | 0.562022 | 3_1:+63301983 | None:intergenic |
| AAGAATAAAATACCTTCAGA+AGG | 0.564413 | 3_1:+63298797 | None:intergenic |
| TTTCCTACAAAGCCTTCTGA+AGG | 0.570910 | 3_1:-63298809 | Msa0367610:intron |
| GGAAACTAGTAGCACTAATG+AGG | 0.571990 | 3_1:-63299042 | Msa0367610:CDS |
| GTGTCCCTTATAAGAACTGA+AGG | 0.574780 | 3_1:+63298578 | None:intergenic |
| TTGTGCTTTGACAAGTCTCA+AGG | 0.577464 | 3_1:-63303315 | Msa0367610:CDS |
| GATTTCCGTTTGATAAGGAG+TGG | 0.580040 | 3_1:-63298418 | Msa0367610:CDS |
| CAGACACCTTATTATAGAAG+TGG | 0.584589 | 3_1:+63303094 | None:intergenic |
| GGAATTTCAATAGCTCTGCT+AGG | 0.587166 | 3_1:+63298516 | None:intergenic |
| ATTTGTTGAGTTATTACAAG+AGG | 0.589015 | 3_1:-63298447 | Msa0367610:CDS |
| GCTGCTTTAAGTGCTTCTCT+CGG | 0.592741 | 3_1:-63298167 | Msa0367610:CDS |
| TATAGATTATGAATTGTACA+AGG | 0.594273 | 3_1:-63302077 | Msa0367610:intron |
| CCAAGCCTTTGCCATGCGAA+AGG | 0.595394 | 3_1:-63302762 | Msa0367610:CDS |
| ACTGATTGCATCTCTTGTTG+AGG | 0.600546 | 3_1:+63301815 | None:intergenic |
| AATTGAGATGCAATAGAAGA+GGG | 0.603074 | 3_1:+63298830 | None:intergenic |
| TTTGATAAGGAGTGGTTGGA+TGG | 0.604397 | 3_1:-63298410 | Msa0367610:CDS |
| TTCTTCTTTGGTTGTCACCG+GGG | 0.604473 | 3_1:-63298678 | Msa0367610:CDS |
| GAACTGAAGGATGCTTAACA+AGG | 0.605435 | 3_1:+63298591 | None:intergenic |
| GTAGCATCAGTTTGTCCAAG+TGG | 0.614637 | 3_1:+63301628 | None:intergenic |
| CCTCCAAACCCATAGTGTGT+TGG | 0.615763 | 3_1:-63298495 | Msa0367610:CDS |
| TAAAGTGTGTACCGTAGCCA+CGG | 0.619372 | 3_1:+63302649 | None:intergenic |
| AGGACACGGGTTGACTTCAG+AGG | 0.621924 | 3_1:-63301978 | Msa0367610:intron |
| CTCCAGCACCATCAGGACAC+GGG | 0.625045 | 3_1:-63301991 | Msa0367610:CDS |
| AAATTGAGATGCAATAGAAG+AGG | 0.634293 | 3_1:+63298829 | None:intergenic |
| GCTCCAGCACCATCAGGACA+CGG | 0.639857 | 3_1:-63301992 | Msa0367610:CDS |
| CAATTACGTAATGAGTCCAA+AGG | 0.665219 | 3_1:-63302034 | Msa0367610:CDS |
| TTCCCAGCAGCATGTCACCA+AGG | 0.668840 | 3_1:-63298321 | Msa0367610:CDS |
| TGCTGTTGATGTTGAAACCA+CGG | 0.671157 | 3_1:+63302686 | None:intergenic |
| GAGCTTCATTACAAGTATCG+TGG | 0.672204 | 3_1:+63302011 | None:intergenic |
| TCAACATCTTGTGCACTAAG+GGG | 0.681437 | 3_1:+63299080 | None:intergenic |
| ATTCTCAAAGTAAACAACTG+TGG | 0.682081 | 3_1:+63303071 | None:intergenic |
| ACATTGAGTAGCAGATACAA+GGG | 0.694179 | 3_1:-63298554 | Msa0367610:CDS |
| GCAGGCTTCAGATATGACCG+TGG | 0.767418 | 3_1:-63302666 | Msa0367610:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATCTAATAAATTATATCATT+TGG | - | chr3_1:63299016-63299035 | Msa0367610:intron | 10.0% |
| !!! | CTATATTTCTATATAAAATA+TGG | - | chr3_1:63299230-63299249 | Msa0367610:intron | 10.0% |
| !! | ATATTGAATATGTATATATT+TGG | + | chr3_1:63299763-63299782 | None:intergenic | 10.0% |
| !!! | GAGTTTATTATATTTTTATA+CGG | + | chr3_1:63300652-63300671 | None:intergenic | 10.0% |
| !!! | ATTATTTTGGTATTATTAAA+TGG | + | chr3_1:63300859-63300878 | None:intergenic | 10.0% |
| !!! | TTATAAAATATTTGAAATTG+AGG | + | chr3_1:63301453-63301472 | None:intergenic | 10.0% |
| !!! | TATTTTTTAAAAAAGTGAAA+CGG | - | chr3_1:63302186-63302205 | Msa0367610:intron | 10.0% |
| !! | AAATTATATCATTTGGTTAA+AGG | - | chr3_1:63299023-63299042 | Msa0367610:intron | 15.0% |
| !! | AAAAAAAACTTGTATTAAAC+AGG | + | chr3_1:63299107-63299126 | None:intergenic | 15.0% |
| !!! | ATAAGATTTCTAAATTTTCA+CGG | + | chr3_1:63300688-63300707 | None:intergenic | 15.0% |
| !!! | GTTTGAATTTATATTCTTTT+TGG | + | chr3_1:63300835-63300854 | None:intergenic | 15.0% |
| !!! | AATGTAAAACATTTTCAATT+AGG | - | chr3_1:63301041-63301060 | Msa0367610:intron | 15.0% |
| !! | TAAAAATGTTTATCTTCAAA+CGG | + | chr3_1:63303204-63303223 | None:intergenic | 15.0% |
| !!! | TTTTTAATCTTGTAAGGTTT+TGG | + | chr3_1:63298339-63298358 | None:intergenic | 20.0% |
| !!! | ACTTTTTAAGTATGAAAAAG+TGG | - | chr3_1:63299161-63299180 | Msa0367610:intron | 20.0% |
| !!! | CTTTTTAAGTATGAAAAAGT+GGG | - | chr3_1:63299162-63299181 | Msa0367610:intron | 20.0% |
| !! | TTCTATATAAAATATGGAAG+TGG | - | chr3_1:63299236-63299255 | Msa0367610:intron | 20.0% |
| !! | TATAGATTATGAATTGTACA+AGG | - | chr3_1:63299409-63299428 | Msa0367610:intron | 20.0% |
| !!! | CAAATTACTTTTGAATTTGT+TGG | + | chr3_1:63299707-63299726 | None:intergenic | 20.0% |
| !! | CAAATTCAAAAGTAATTTGA+AGG | - | chr3_1:63299708-63299727 | Msa0367610:intron | 20.0% |
| !!! | ATTACATTATTTTCTTGAGA+AGG | + | chr3_1:63299891-63299910 | None:intergenic | 20.0% |
| !! | TATTTAAATCTTTAGTCATC+AGG | + | chr3_1:63300176-63300195 | None:intergenic | 20.0% |
| !! | CTGAAAAAAATAGAAAATGA+AGG | - | chr3_1:63300507-63300526 | Msa0367610:intron | 20.0% |
| !!! | CTATATTTTCTTTAAAGTTG+TGG | + | chr3_1:63300773-63300792 | None:intergenic | 20.0% |
| !!! | TAGATTATTTTCACTAAAGT+TGG | + | chr3_1:63300906-63300925 | None:intergenic | 20.0% |
| !! | CTTTAGTGAAAATAATCTAA+TGG | - | chr3_1:63300907-63300926 | Msa0367610:intron | 20.0% |
| !!! | TTTTGAATTGGATTTGAATT+TGG | + | chr3_1:63301326-63301345 | None:intergenic | 20.0% |
| !!! | ATATTAATTTGTAAGCGATT+TGG | + | chr3_1:63301350-63301369 | None:intergenic | 20.0% |
| !!! | AAATATTTGAAATTGAGGTT+TGG | + | chr3_1:63301448-63301467 | None:intergenic | 20.0% |
| !! | AAATGTTCAAAATGTTCAAA+GGG | - | chr3_1:63301530-63301549 | Msa0367610:intron | 20.0% |
| !! | TTATAGTATCTATCAAATTG+GGG | + | chr3_1:63301562-63301581 | None:intergenic | 20.0% |
| !! | GTTATAGTATCTATCAAATT+GGG | + | chr3_1:63301563-63301582 | None:intergenic | 20.0% |
| !! | TGTTATAGTATCTATCAAAT+TGG | + | chr3_1:63301564-63301583 | None:intergenic | 20.0% |
| !!! | ATTTGAATTTTGTAGAAAGA+AGG | - | chr3_1:63302337-63302356 | Msa0367610:intron | 20.0% |
| !!! | CTTTAACTTCAAAATGAAAA+GGG | + | chr3_1:63302519-63302538 | None:intergenic | 20.0% |
| !!! | ACTTTAACTTCAAAATGAAA+AGG | + | chr3_1:63302520-63302539 | None:intergenic | 20.0% |
| !! | AATCTTCATATATTTGAGAA+TGG | + | chr3_1:63302784-63302803 | None:intergenic | 20.0% |
| !!! | TTTTGAGAGAATTTTAAATC+AGG | + | chr3_1:63303124-63303143 | None:intergenic | 20.0% |
| !!! | AAACATTTTTAATCAACATG+TGG | - | chr3_1:63303213-63303232 | Msa0367610:CDS | 20.0% |
| ! | ACAAAAGATATCTTCTACAT+TGG | + | chr3_1:63298206-63298225 | None:intergenic | 25.0% |
| !! | AGGTTTGGAATTCATTTATT+TGG | - | chr3_1:63298258-63298277 | Msa0367610:CDS | 25.0% |
| !! | TGGAGAGAAAATGAATTTTT+GGG | + | chr3_1:63298319-63298338 | None:intergenic | 25.0% |
| !! | TTGGAGAGAAAATGAATTTT+TGG | + | chr3_1:63298320-63298339 | None:intergenic | 25.0% |
| !! | GCTTGATTTTTAATCTTGTA+AGG | + | chr3_1:63298345-63298364 | None:intergenic | 25.0% |
| !! | TTTTCTCCACTTCTATAATA+AGG | - | chr3_1:63298386-63298405 | Msa0367610:CDS | 25.0% |
| ! | CTTTGTAGACATAAAATTTG+AGG | + | chr3_1:63298497-63298516 | None:intergenic | 25.0% |
| ! | AATACTACAACTTTCAGATT+TGG | + | chr3_1:63298694-63298713 | None:intergenic | 25.0% |
| !!! | ACAAGTTTTTTTTTTCCTCT+AGG | - | chr3_1:63299114-63299133 | Msa0367610:CDS | 25.0% |
| ! | TATTATGAATCCAATCATCA+AGG | - | chr3_1:63299560-63299579 | Msa0367610:intron | 25.0% |
| !! | ATTTTTGATGCAGAAAGAAA+TGG | - | chr3_1:63299607-63299626 | Msa0367610:intron | 25.0% |
| ! | GAATATGTATATATTTGGAG+AGG | + | chr3_1:63299758-63299777 | None:intergenic | 25.0% |
| ! | AATTCATATGTTCTTACTAC+AGG | - | chr3_1:63299800-63299819 | Msa0367610:intron | 25.0% |
| ! | TAATATAGTACAACCTCATT+GGG | - | chr3_1:63299907-63299926 | Msa0367610:intron | 25.0% |
| !! | ATTTTATGCTATCAGTTGAA+GGG | - | chr3_1:63299985-63300004 | Msa0367610:intron | 25.0% |
| !!! | CTTGGTAATGTTGAAATTAT+AGG | + | chr3_1:63300261-63300280 | None:intergenic | 25.0% |
| ! | GATGATAATAGTTTATGAAC+AGG | + | chr3_1:63300292-63300311 | None:intergenic | 25.0% |
| !!! | AAAATGTCACTTTGAAATTC+TGG | + | chr3_1:63300317-63300336 | None:intergenic | 25.0% |
| !!! | TTCTTTAAAGTTGTGGATTT+GGG | + | chr3_1:63300766-63300785 | None:intergenic | 25.0% |
| !!! | TTTCTTTAAAGTTGTGGATT+TGG | + | chr3_1:63300767-63300786 | None:intergenic | 25.0% |
| !!! | GAATGGTGTTTTGAAAATTA+CGG | + | chr3_1:63301196-63301215 | None:intergenic | 25.0% |
| !! | TATGTTGTGAAATATGGTTT+TGG | + | chr3_1:63301232-63301251 | None:intergenic | 25.0% |
| ! | GCGTAACTTATTTCAAAAAT+AGG | - | chr3_1:63301252-63301271 | Msa0367610:intron | 25.0% |
| !!! | TTTTGGGATATATGTTCTTT+GGG | + | chr3_1:63301381-63301400 | None:intergenic | 25.0% |
| ! | GAAATGTTCAAAATGTTCAA+AGG | - | chr3_1:63301529-63301548 | Msa0367610:intron | 25.0% |
| ! | AACTCAATTAGTGCATATTT+AGG | + | chr3_1:63301807-63301826 | None:intergenic | 25.0% |
| ! | TATGGTTTATGGAAGAAATA+TGG | - | chr3_1:63301989-63302008 | Msa0367610:CDS | 25.0% |
| ! | TTGAAAACGTGTAAAAATGA+GGG | + | chr3_1:63302227-63302246 | None:intergenic | 25.0% |
| !! | TTTTTACACGTTTTCAACTT+AGG | - | chr3_1:63302230-63302249 | Msa0367610:intron | 25.0% |
| !! | TATTGAGGATCAATTTTCTA+AGG | - | chr3_1:63302604-63302623 | Msa0367610:intron | 25.0% |
| ! | AAGAATAAAATACCTTCAGA+AGG | + | chr3_1:63302692-63302711 | None:intergenic | 25.0% |
| ! | TTATTCTTTCCTATACTTTC+AGG | - | chr3_1:63302755-63302774 | Msa0367610:CDS | 25.0% |
| ! | TATTCTTTCCTATACTTTCA+GGG | - | chr3_1:63302756-63302775 | Msa0367610:CDS | 25.0% |
| !! | TGAAGATTTAAGTTCTTCTT+TGG | - | chr3_1:63302796-63302815 | Msa0367610:CDS | 25.0% |
| !! | ATTTGTTGAGTTATTACAAG+AGG | - | chr3_1:63303039-63303058 | Msa0367610:CDS | 25.0% |
| ATTCTCAAAGTAAACAACTG+TGG | + | chr3_1:63298418-63298437 | None:intergenic | 30.0% | |
| CAATAATATGCTTCAACTCT+TGG | + | chr3_1:63298450-63298469 | None:intergenic | 30.0% | |
| GCATATTATTGAAGATGACT+TGG | - | chr3_1:63298459-63298478 | Msa0367610:CDS | 30.0% | |
| ! | ACAACAACTGTATTTAGCTT+CGG | + | chr3_1:63298529-63298548 | None:intergenic | 30.0% |
| AGAGGAAATATTTGTAAGTG+AGG | - | chr3_1:63298645-63298664 | Msa0367610:CDS | 30.0% | |
| GAGGAAATATTTGTAAGTGA+GGG | - | chr3_1:63298646-63298665 | Msa0367610:CDS | 30.0% | |
| ! | TATACTTTTCTTCTAGACCT+TGG | + | chr3_1:63298981-63299000 | None:intergenic | 30.0% |
| ! | TGACAATTTAAAGTCGAAAG+TGG | - | chr3_1:63299319-63299338 | Msa0367610:intron | 30.0% |
| GTAATATAGTACAACCTCAT+TGG | - | chr3_1:63299906-63299925 | Msa0367610:intron | 30.0% | |
| ! | CATTTTATGCTATCAGTTGA+AGG | - | chr3_1:63299984-63300003 | Msa0367610:intron | 30.0% |
| !! | ATTCCTTGTTGTTTCTGAAA+TGG | + | chr3_1:63300049-63300068 | None:intergenic | 30.0% |
| CGAACTAATACCTTATAGTT+CGG | - | chr3_1:63300146-63300165 | Msa0367610:intron | 30.0% | |
| TATGAACAGGATTTACATCT+TGG | + | chr3_1:63300279-63300298 | None:intergenic | 30.0% | |
| ! | TCTTTACGACATTGGAATTT+TGG | + | chr3_1:63300737-63300756 | None:intergenic | 30.0% |
| ! | CTCTTCAAAGTCGATTATTT+TGG | + | chr3_1:63300872-63300891 | None:intergenic | 30.0% |
| CCTAGTATGTGATTTCAATT+AGG | + | chr3_1:63301148-63301167 | None:intergenic | 30.0% | |
| CCTAATTGAAATCACATACT+AGG | - | chr3_1:63301145-63301164 | Msa0367610:intron | 30.0% | |
| TTGGCATTGTGATTTAAGAA+TGG | + | chr3_1:63301213-63301232 | None:intergenic | 30.0% | |
| TTACGCTATGTTGTGAAATA+TGG | + | chr3_1:63301238-63301257 | None:intergenic | 30.0% | |
| !! | AAGCGATTTGGATTTTGAAT+TGG | + | chr3_1:63301338-63301357 | None:intergenic | 30.0% |
| !!! | GTTTTGGGATATATGTTCTT+TGG | + | chr3_1:63301382-63301401 | None:intergenic | 30.0% |
| !!! | TTTTGAGACATGGAGAAATA+CGG | + | chr3_1:63301404-63301423 | None:intergenic | 30.0% |
| AGTTGATCATTAAGACTTCT+TGG | + | chr3_1:63301850-63301869 | None:intergenic | 30.0% | |
| AATGATCAACTTTCACAGTA+TGG | - | chr3_1:63301859-63301878 | Msa0367610:CDS | 30.0% | |
| GAAGGAAAATGATGTATTGA+AGG | - | chr3_1:63302031-63302050 | Msa0367610:CDS | 30.0% | |
| GAAAATGATGTATTGAAGGA+TGG | - | chr3_1:63302035-63302054 | Msa0367610:CDS | 30.0% | |
| TGAAAACGTGTAAAAATGAG+GGG | + | chr3_1:63302226-63302245 | None:intergenic | 30.0% | |
| GTTGAAAACGTGTAAAAATG+AGG | + | chr3_1:63302228-63302247 | None:intergenic | 30.0% | |
| TGTTGATGTTAAAATCTGTC+AGG | - | chr3_1:63302423-63302442 | Msa0367610:intron | 30.0% | |
| CATTTAGAGAAACTGACAAA+AGG | + | chr3_1:63302556-63302575 | None:intergenic | 30.0% | |
| GAAAGTAAGCTCAAATATTG+AGG | - | chr3_1:63302589-63302608 | Msa0367610:intron | 30.0% | |
| AATTGAGATGCAATAGAAGA+GGG | + | chr3_1:63302659-63302678 | None:intergenic | 30.0% | |
| AAATTGAGATGCAATAGAAG+AGG | + | chr3_1:63302660-63302679 | None:intergenic | 30.0% | |
| ATTCTTTCCTATACTTTCAG+GGG | - | chr3_1:63302757-63302776 | Msa0367610:CDS | 30.0% | |
| AAATGCAATGCAAAAGCTAT+TGG | - | chr3_1:63303141-63303160 | Msa0367610:CDS | 30.0% | |
| !!! | AGCACAAGTTTTAGAAACTA+AGG | - | chr3_1:63303297-63303316 | Msa0367610:CDS | 30.0% |
| AATGAACAGCAAATGAGCTT+AGG | - | chr3_1:63298238-63298257 | Msa0367610:CDS | 35.0% | |
| ! | AATGATGACATGCCTTTTTG+TGG | - | chr3_1:63298291-63298310 | Msa0367610:CDS | 35.0% |
| ! | ATGATGACATGCCTTTTTGT+GGG | - | chr3_1:63298292-63298311 | Msa0367610:CDS | 35.0% |
| !!! | AATTTTTGGGACCCACAAAA+AGG | + | chr3_1:63298306-63298325 | None:intergenic | 35.0% |
| CAGACACCTTATTATAGAAG+TGG | + | chr3_1:63298395-63298414 | None:intergenic | 35.0% | |
| GAAATTGAATTCCTTTCGCA+TGG | + | chr3_1:63298738-63298757 | None:intergenic | 35.0% | |
| ATCATGCTGTAAACTTACCA+AGG | - | chr3_1:63298894-63298913 | Msa0367610:CDS | 35.0% | |
| CTTACCAAGGACTAGATTTA+AGG | - | chr3_1:63298907-63298926 | Msa0367610:CDS | 35.0% | |
| TCATCCTTAAATCTAGTCCT+TGG | + | chr3_1:63298914-63298933 | None:intergenic | 35.0% | |
| TAGACCTTGGTAAGAAAAAG+GGG | + | chr3_1:63298968-63298987 | None:intergenic | 35.0% | |
| CTAGACCTTGGTAAGAAAAA+GGG | + | chr3_1:63298969-63298988 | None:intergenic | 35.0% | |
| TCTAGACCTTGGTAAGAAAA+AGG | + | chr3_1:63298970-63298989 | None:intergenic | 35.0% | |
| ! | AATTGAAGCACCTAAAGTAG+AGG | - | chr3_1:63299054-63299073 | Msa0367610:CDS | 35.0% |
| ATCATGCATACCTCTACTTT+AGG | + | chr3_1:63299067-63299086 | None:intergenic | 35.0% | |
| TATGAAAAAGTGGGATGTTG+CGG | - | chr3_1:63299171-63299190 | Msa0367610:intron | 35.0% | |
| ! | GTCATCTTCAAGTTCAAAGA+TGG | + | chr3_1:63299303-63299322 | None:intergenic | 35.0% |
| CAATTACGTAATGAGTCCAA+AGG | - | chr3_1:63299452-63299471 | Msa0367610:intron | 35.0% | |
| ! | AAATACACTGCCTTGATGAT+TGG | + | chr3_1:63299573-63299592 | None:intergenic | 35.0% |
| ATATCCAAGTGATCTTCACA+TGG | + | chr3_1:63299734-63299753 | None:intergenic | 35.0% | |
| GTCGATGAATGAACAAGAAA+TGG | - | chr3_1:63299824-63299843 | Msa0367610:intron | 35.0% | |
| TTAAGAGCAGCTAACTGTAT+AGG | + | chr3_1:63300078-63300097 | None:intergenic | 35.0% | |
| GTTAGCTGCTCTTAAACATA+AGG | - | chr3_1:63300083-63300102 | Msa0367610:intron | 35.0% | |
| ! | CCGGTCACGATTATATTTTT+GGG | + | chr3_1:63300122-63300141 | None:intergenic | 35.0% |
| CCCAAAAATATAATCGTGAC+CGG | - | chr3_1:63300119-63300138 | Msa0367610:intron | 35.0% | |
| AACAATAGAGACATTCGTCA+AGG | - | chr3_1:63300413-63300432 | Msa0367610:intron | 35.0% | |
| AAATGAAGGAGTAAGTCACA+AGG | - | chr3_1:63300521-63300540 | Msa0367610:intron | 35.0% | |
| ! | ACATGGAGAAATACGGTTTT+GGG | + | chr3_1:63301397-63301416 | None:intergenic | 35.0% |
| !!! | ATGACATGACTTTTGAGACA+TGG | + | chr3_1:63301414-63301433 | None:intergenic | 35.0% |
| TTGATGCTCAGATATGATGT+CGG | + | chr3_1:63301716-63301735 | None:intergenic | 35.0% | |
| !! | ATTTAGGCATGTTTGGTGTT+AGG | + | chr3_1:63301791-63301810 | None:intergenic | 35.0% |
| AGTGCATATTTAGGCATGTT+TGG | + | chr3_1:63301798-63301817 | None:intergenic | 35.0% | |
| TGATCATTAAGACTTCTTGG+AGG | + | chr3_1:63301847-63301866 | None:intergenic | 35.0% | |
| ! | TTGGGTTTGTGGATTAAGAA+AGG | + | chr3_1:63301894-63301913 | None:intergenic | 35.0% |
| AAATTGATCTCACGTGTGTA+TGG | - | chr3_1:63301971-63301990 | Msa0367610:intron | 35.0% | |
| AAGAAGTGGAAACTGAAAGA+GGG | - | chr3_1:63302061-63302080 | Msa0367610:CDS | 35.0% | |
| CTTCGGGAGAAATAAAATGA+GGG | - | chr3_1:63302093-63302112 | Msa0367610:intron | 35.0% | |
| ! | GAGAAATAAAATGAGGGTGT+GGG | - | chr3_1:63302099-63302118 | Msa0367610:intron | 35.0% |
| ! | AGAAATAAAATGAGGGTGTG+GGG | - | chr3_1:63302100-63302119 | Msa0367610:intron | 35.0% |
| ATCAACATCTTGTGCACTAA+GGG | + | chr3_1:63302410-63302429 | None:intergenic | 35.0% | |
| TAGAGAAACTGACAAAAGGT+GGG | + | chr3_1:63302552-63302571 | None:intergenic | 35.0% | |
| TTAGAGAAACTGACAAAAGG+TGG | + | chr3_1:63302553-63302572 | None:intergenic | 35.0% | |
| AGCATCCTTCAGTTCTTATA+AGG | - | chr3_1:63302903-63302922 | Msa0367610:CDS | 35.0% | |
| GCATCCTTCAGTTCTTATAA+GGG | - | chr3_1:63302904-63302923 | Msa0367610:CDS | 35.0% | |
| TACATTGAGTAGCAGATACA+AGG | - | chr3_1:63302931-63302950 | Msa0367610:CDS | 35.0% | |
| ACATTGAGTAGCAGATACAA+GGG | - | chr3_1:63302932-63302951 | Msa0367610:CDS | 35.0% | |
| TAACACATCCAACACACTAT+GGG | + | chr3_1:63303002-63303021 | None:intergenic | 35.0% | |
| TTGTGCTTTGACAAGTCTCA+AGG | - | chr3_1:63298171-63298190 | Msa0367610:CDS | 40.0% | |
| ACAGCAAATGAGCTTAGGTT+TGG | - | chr3_1:63298243-63298262 | Msa0367610:CDS | 40.0% | |
| ATGTCTTTCCAGTCTCCATA+TGG | - | chr3_1:63298572-63298591 | Msa0367610:CDS | 40.0% | |
| TGTCTTTCCAGTCTCCATAT+GGG | - | chr3_1:63298573-63298592 | Msa0367610:CDS | 40.0% | |
| TTCAGAAAGCTCTTCCCATA+TGG | + | chr3_1:63298590-63298609 | None:intergenic | 40.0% | |
| GGAAGAGCTTTCTGAACTAA+AGG | - | chr3_1:63298594-63298613 | Msa0367610:CDS | 40.0% | |
| AAGAGAAGCAGATGAGTTAG+AGG | - | chr3_1:63298627-63298646 | Msa0367610:CDS | 40.0% | |
| GAATTGTCAAAAACTCTCCG+TGG | - | chr3_1:63298783-63298802 | Msa0367610:intron | 40.0% | |
| TGCTGTTGATGTTGAAACCA+CGG | + | chr3_1:63298803-63298822 | None:intergenic | 40.0% | |
| ! | TTCACCCCTTTTTCTTACCA+AGG | - | chr3_1:63298961-63298980 | Msa0367610:intron | 40.0% |
| GTATGCATGATAAGAGCTTG+TGG | - | chr3_1:63299076-63299095 | Msa0367610:CDS | 40.0% | |
| CTCTAGGTCAAGTAGTTTAG+CGG | - | chr3_1:63299130-63299149 | Msa0367610:CDS | 40.0% | |
| ATGAAAAAGTGGGATGTTGC+GGG | - | chr3_1:63299172-63299191 | Msa0367610:intron | 40.0% | |
| ! | ATTACAAGTATCGTGGCCTT+TGG | + | chr3_1:63299471-63299490 | None:intergenic | 40.0% |
| ! | GAGCTTCATTACAAGTATCG+TGG | + | chr3_1:63299478-63299497 | None:intergenic | 40.0% |
| ACTGATTGCATCTCTTGTTG+AGG | + | chr3_1:63299674-63299693 | None:intergenic | 40.0% | |
| !! | TTAGCTTTACATGCCCAATG+AGG | + | chr3_1:63299923-63299942 | None:intergenic | 40.0% |
| CGACCATTTCAGAAACAACA+AGG | - | chr3_1:63300043-63300062 | Msa0367610:intron | 40.0% | |
| ! | GCCGGTCACGATTATATTTT+TGG | + | chr3_1:63300123-63300142 | None:intergenic | 40.0% |
| GTCAAGTATCTGCAGCTATT+TGG | + | chr3_1:63300378-63300397 | None:intergenic | 40.0% | |
| TTTCAGATTTCCAAGCAGCT+AGG | + | chr3_1:63300493-63300512 | None:intergenic | 40.0% | |
| AAGGGAAACACACAACACAA+GGG | - | chr3_1:63300576-63300595 | Msa0367610:intron | 40.0% | |
| GGTTCACTTCTTTACGACAT+TGG | + | chr3_1:63300745-63300764 | None:intergenic | 40.0% | |
| GAAAAGAGCTATCCGTTAGA+TGG | + | chr3_1:63301004-63301023 | None:intergenic | 40.0% | |
| GGTTATAATGACGACAACCT+AGG | + | chr3_1:63301175-63301194 | None:intergenic | 40.0% | |
| ! | GACATGGAGAAATACGGTTT+TGG | + | chr3_1:63301398-63301417 | None:intergenic | 40.0% |
| TCGTCATCAACTCACAGTTA+TGG | - | chr3_1:63301638-63301657 | Msa0367610:CDS | 40.0% | |
| TTCATATGCTTCTTCAGGAG+TGG | + | chr3_1:63301689-63301708 | None:intergenic | 40.0% | |
| GATGCTTCATATGCTTCTTC+AGG | + | chr3_1:63301694-63301713 | None:intergenic | 40.0% | |
| !!! | GGATTTTGAGTTTGGGTTTG+TGG | + | chr3_1:63301905-63301924 | None:intergenic | 40.0% |
| !!! | TTGGGTGGGATTTTGAGTTT+GGG | + | chr3_1:63301912-63301931 | None:intergenic | 40.0% |
| TCTCACGTGTGTATGGTTTA+TGG | - | chr3_1:63301978-63301997 | Msa0367610:intron | 40.0% | |
| TTGAAGGATGGTAGAAGAAG+TGG | - | chr3_1:63302047-63302066 | Msa0367610:CDS | 40.0% | |
| GAAGAAGTGGAAACTGAAAG+AGG | - | chr3_1:63302060-63302079 | Msa0367610:CDS | 40.0% | |
| AAAGAGGGATGTAGAAGCTT+CGG | - | chr3_1:63302076-63302095 | Msa0367610:intron | 40.0% | |
| GCTTCGGGAGAAATAAAATG+AGG | - | chr3_1:63302092-63302111 | Msa0367610:intron | 40.0% | |
| GGAGAAATAAAATGAGGGTG+TGG | - | chr3_1:63302098-63302117 | Msa0367610:intron | 40.0% | |
| TCAACATCTTGTGCACTAAG+GGG | + | chr3_1:63302409-63302428 | None:intergenic | 40.0% | |
| CATCAACATCTTGTGCACTA+AGG | + | chr3_1:63302411-63302430 | None:intergenic | 40.0% | |
| GGAAACTAGTAGCACTAATG+AGG | - | chr3_1:63302444-63302463 | Msa0367610:intron | 40.0% | |
| AGTAGCACTAATGAGGATCA+AGG | - | chr3_1:63302451-63302470 | Msa0367610:intron | 40.0% | |
| TTTCCTACAAAGCCTTCTGA+AGG | - | chr3_1:63302677-63302696 | Msa0367610:CDS | 40.0% | |
| ! | ATACCTTCAGAAGGCTTTGT+AGG | + | chr3_1:63302683-63302702 | None:intergenic | 40.0% |
| AGTTCTTCTTTGGTTGTCAC+CGG | - | chr3_1:63302806-63302825 | Msa0367610:CDS | 40.0% | |
| !! | TCTAGTCTCCAAGAAGCATT+TGG | - | chr3_1:63302841-63302860 | Msa0367610:CDS | 40.0% |
| GAACTGAAGGATGCTTAACA+AGG | + | chr3_1:63302898-63302917 | None:intergenic | 40.0% | |
| GTGTCCCTTATAAGAACTGA+AGG | + | chr3_1:63302911-63302930 | None:intergenic | 40.0% | |
| ! | GGAATTTCAATAGCTCTGCT+AGG | + | chr3_1:63302973-63302992 | None:intergenic | 40.0% |
| CTAACACATCCAACACACTA+TGG | + | chr3_1:63303003-63303022 | None:intergenic | 40.0% | |
| CATAGTGTGTTGGATGTGTT+AGG | - | chr3_1:63303001-63303020 | Msa0367610:CDS | 40.0% | |
| GCGTAGATTTCCGTTTGATA+AGG | - | chr3_1:63303063-63303082 | Msa0367610:CDS | 40.0% | |
| GATTTCCGTTTGATAAGGAG+TGG | - | chr3_1:63303068-63303087 | Msa0367610:CDS | 40.0% | |
| TCCAACCACTCCTTATCAAA+CGG | + | chr3_1:63303076-63303095 | None:intergenic | 40.0% | |
| TTTGATAAGGAGTGGTTGGA+TGG | - | chr3_1:63303076-63303095 | Msa0367610:CDS | 40.0% | |
| ! | GACATCTTGTGAAGCTGTTT+TGG | - | chr3_1:63303255-63303274 | Msa0367610:CDS | 40.0% |
| GAATTCCTTTCGCATGGCAA+AGG | + | chr3_1:63298732-63298751 | None:intergenic | 45.0% | |
| GTGGTTTCAACATCAACAGC+AGG | - | chr3_1:63298802-63298821 | Msa0367610:intron | 45.0% | |
| TTCAGATATGACCGTGGCTA+CGG | - | chr3_1:63298826-63298845 | Msa0367610:CDS | 45.0% | |
| TAAAGTGTGTACCGTAGCCA+CGG | + | chr3_1:63298840-63298859 | None:intergenic | 45.0% | |
| TGCATGATAAGAGCTTGTGG+AGG | - | chr3_1:63299079-63299098 | Msa0367610:CDS | 45.0% | |
| GCATGATAAGAGCTTGTGGA+GGG | - | chr3_1:63299080-63299099 | Msa0367610:CDS | 45.0% | |
| CGCTAAACTACTTGACCTAG+AGG | + | chr3_1:63299132-63299151 | None:intergenic | 45.0% | |
| AGCTCAGTACATCTGTTTGC+AGG | + | chr3_1:63299212-63299231 | None:intergenic | 45.0% | |
| AAGGCCATGTGAAGATCACT+TGG | - | chr3_1:63299727-63299746 | Msa0367610:intron | 45.0% | |
| GTAGCATCAGTTTGTCCAAG+TGG | + | chr3_1:63299861-63299880 | None:intergenic | 45.0% | |
| ! | TAAGGTATTAGTTCGTGCGC+CGG | + | chr3_1:63300141-63300160 | None:intergenic | 45.0% |
| ATCAGGCTTGCCGAACTATA+AGG | + | chr3_1:63300159-63300178 | None:intergenic | 45.0% | |
| GCCTACCAAAATGAGTGATG+CGG | - | chr3_1:63300438-63300457 | Msa0367610:intron | 45.0% | |
| ! | TTCAGCCGCATCACTCATTT+TGG | + | chr3_1:63300446-63300465 | None:intergenic | 45.0% |
| AACAACCACCACCACTAGAA+GGG | - | chr3_1:63300558-63300577 | Msa0367610:intron | 45.0% | |
| GTTGTGTGTTTCCCTTCTAG+TGG | + | chr3_1:63300572-63300591 | None:intergenic | 45.0% | |
| GAAGGGAAACACACAACACA+AGG | - | chr3_1:63300575-63300594 | Msa0367610:intron | 45.0% | |
| CTAATGGTGGCCTTTCCATA+GGG | - | chr3_1:63300972-63300991 | Msa0367610:intron | 45.0% | |
| TAATGGTGGCCTTTCCATAG+GGG | - | chr3_1:63300973-63300992 | Msa0367610:intron | 45.0% | |
| GGTAGAGTTACTCCGTTAGA+TGG | + | chr3_1:63301127-63301146 | None:intergenic | 45.0% | |
| ATCACATACTAGGTGCACCT+AGG | - | chr3_1:63301155-63301174 | Msa0367610:intron | 45.0% | |
| !!! | CTTGGGTGGGATTTTGAGTT+TGG | + | chr3_1:63301913-63301932 | None:intergenic | 45.0% |
| CAACTCTCACAAGTGCTCTT+GGG | + | chr3_1:63301930-63301949 | None:intergenic | 45.0% | |
| TCAACTCTCACAAGTGCTCT+TGG | + | chr3_1:63301931-63301950 | None:intergenic | 45.0% | |
| TGGTACGTTGAAAGAGAGAG+AGG | - | chr3_1:63302009-63302028 | Msa0367610:CDS | 45.0% | |
| ACGTTGAAAGAGAGAGAGGA+AGG | - | chr3_1:63302013-63302032 | Msa0367610:CDS | 45.0% | |
| AAGAGGGATGTAGAAGCTTC+GGG | - | chr3_1:63302077-63302096 | Msa0367610:intron | 45.0% | |
| ! | TAAAATGAGGGTGTGGGGTT+AGG | - | chr3_1:63302105-63302124 | Msa0367610:intron | 45.0% |
| !! | GGCTTTGTTATGGCAATTGG+AGG | + | chr3_1:63302388-63302407 | None:intergenic | 45.0% |
| !! | AGGGGCTTTGTTATGGCAAT+TGG | + | chr3_1:63302391-63302410 | None:intergenic | 45.0% |
| !! | TGCACTAAGGGGCTTTGTTA+TGG | + | chr3_1:63302398-63302417 | None:intergenic | 45.0% |
| ! | GAATGGTCCCCTGAAAGTAT+AGG | + | chr3_1:63302767-63302786 | None:intergenic | 45.0% |
| GTTCTTCTTTGGTTGTCACC+GGG | - | chr3_1:63302807-63302826 | Msa0367610:CDS | 45.0% | |
| TTCTTCTTTGGTTGTCACCG+GGG | - | chr3_1:63302808-63302827 | Msa0367610:CDS | 45.0% | |
| CTCAACAGCCAAATGCTTCT+TGG | + | chr3_1:63302852-63302871 | None:intergenic | 45.0% | |
| CATCCAACACACTATGGGTT+TGG | + | chr3_1:63302997-63303016 | None:intergenic | 45.0% | |
| TCCGTTTGATAAGGAGTGGT+TGG | - | chr3_1:63303072-63303091 | Msa0367610:CDS | 45.0% | |
| ACGGATCTCTTCAACTTCCT+TGG | + | chr3_1:63303185-63303204 | None:intergenic | 45.0% | |
| ! | GCTGCTTTAAGTGCTTCTCT+CGG | - | chr3_1:63303319-63303338 | Msa0367610:CDS | 45.0% |
| !!! | TATGAATTTTTATTTTTTAT+AGG | + | chr3_1:63302301-63302320 | None:intergenic | 5.0% |
| AGCTCTTCCCATATGGAGAC+TGG | + | chr3_1:63298583-63298602 | None:intergenic | 50.0% | |
| AAAGTGGGATGTTGCGGGTT+CGG | - | chr3_1:63299177-63299196 | Msa0367610:intron | 50.0% | |
| CATCTGTTTGCAGGAGAGCA+GGG | + | chr3_1:63299203-63299222 | None:intergenic | 50.0% | |
| ACATCTGTTTGCAGGAGAGC+AGG | + | chr3_1:63299204-63299223 | None:intergenic | 50.0% | |
| AATGAAGCTCCAGCACCATC+AGG | - | chr3_1:63299488-63299507 | Msa0367610:intron | 50.0% | |
| ATGGAGCAACAACGTCCACT+TGG | - | chr3_1:63299843-63299862 | Msa0367610:intron | 50.0% | |
| !! | GCCGCATCACTCATTTTGGT+AGG | + | chr3_1:63300442-63300461 | None:intergenic | 50.0% |
| ATGAGTGATGCGGCTGAACT+TGG | - | chr3_1:63300448-63300467 | Msa0367610:intron | 50.0% | |
| TGAGTGATGCGGCTGAACTT+GGG | - | chr3_1:63300449-63300468 | Msa0367610:intron | 50.0% | |
| CAACAACCACCACCACTAGA+AGG | - | chr3_1:63300557-63300576 | Msa0367610:intron | 50.0% | |
| TGTTTCCCTTCTAGTGGTGG+TGG | + | chr3_1:63300566-63300585 | None:intergenic | 50.0% | |
| GTGTGTTTCCCTTCTAGTGG+TGG | + | chr3_1:63300569-63300588 | None:intergenic | 50.0% | |
| TGATAGCCCTCTCCTCCTAA+TGG | - | chr3_1:63300956-63300975 | Msa0367610:intron | 50.0% | |
| ATGGAAAGGCCACCATTAGG+AGG | + | chr3_1:63300971-63300990 | None:intergenic | 50.0% | |
| CCTATGGAAAGGCCACCATT+AGG | + | chr3_1:63300974-63300993 | None:intergenic | 50.0% | |
| CCTAATGGTGGCCTTTCCAT+AGG | - | chr3_1:63300971-63300990 | Msa0367610:intron | 50.0% | |
| AGGAGAGGGCTATCAACAAG+AGG | + | chr3_1:63301074-63301093 | None:intergenic | 50.0% | |
| TGATAGCCCTCTCCTCCTAA+TGG | - | chr3_1:63300956-63300975 | Msa0367610:intron | 50.0% | |
| CTAATGGCGGCCTATCCATA+GGG | - | chr3_1:63301095-63301114 | Msa0367610:intron | 50.0% | |
| TAATGGCGGCCTATCCATAG+GGG | - | chr3_1:63301096-63301115 | Msa0367610:intron | 50.0% | |
| TCTCACAAGTGCTCTTGGGT+GGG | + | chr3_1:63301926-63301945 | None:intergenic | 50.0% | |
| GGCAATTGGAGGAGAAGCTA+TGG | + | chr3_1:63302377-63302396 | None:intergenic | 50.0% | |
| ! | TAGCTCTGCTAGGCTGTTGT+AGG | + | chr3_1:63302963-63302982 | None:intergenic | 50.0% |
| CCAACACACTATGGGTTTGG+AGG | + | chr3_1:63302994-63303013 | None:intergenic | 50.0% | |
| CCTCCAAACCCATAGTGTGT+TGG | - | chr3_1:63302991-63303010 | Msa0367610:CDS | 50.0% | |
| ! | TTCCTTGGTGACATGCTGCT+GGG | + | chr3_1:63303170-63303189 | None:intergenic | 50.0% |
| ! | TCGCATGGCAAAGGCTTGGT+AGG | + | chr3_1:63298723-63298742 | None:intergenic | 55.0% |
| CCTTTCGCATGGCAAAGGCT+TGG | + | chr3_1:63298727-63298746 | None:intergenic | 55.0% | |
| CCAAGCCTTTGCCATGCGAA+AGG | - | chr3_1:63298724-63298743 | Msa0367610:intron | 55.0% | |
| GCAGGCTTCAGATATGACCG+TGG | - | chr3_1:63298820-63298839 | Msa0367610:CDS | 55.0% | |
| GAAGTCAACCCGTGTCCTGA+TGG | + | chr3_1:63299506-63299525 | None:intergenic | 55.0% | |
| ! | AGGACACGGGTTGACTTCAG+AGG | - | chr3_1:63299508-63299527 | Msa0367610:intron | 55.0% |
| CAGCTCTCTACCTAGCTGCT+TGG | - | chr3_1:63300480-63300499 | Msa0367610:intron | 55.0% | |
| GGAGAGGGCTATCAACGAGA+TGG | + | chr3_1:63300950-63300969 | None:intergenic | 55.0% | |
| TAGCCCTCTCCTCCTAATGG+TGG | - | chr3_1:63300959-63300978 | Msa0367610:intron | 55.0% | |
| AGGCCACCATTAGGAGGAGA+GGG | + | chr3_1:63300965-63300984 | None:intergenic | 55.0% | |
| AAGGCCACCATTAGGAGGAG+AGG | + | chr3_1:63300966-63300985 | None:intergenic | 55.0% | |
| ATAGGGGCGGCTCCATCTAA+CGG | - | chr3_1:63300989-63301008 | Msa0367610:intron | 55.0% | |
| TAGCCCTCTCCTCCTAATGG+CGG | - | chr3_1:63300959-63300978 | Msa0367610:intron | 55.0% | |
| ATGGATAGGCCGCCATTAGG+AGG | + | chr3_1:63301094-63301113 | None:intergenic | 55.0% | |
| CCTATGGATAGGCCGCCATT+AGG | + | chr3_1:63301097-63301116 | None:intergenic | 55.0% | |
| CCTAATGGCGGCCTATCCAT+AGG | - | chr3_1:63301094-63301113 | Msa0367610:intron | 55.0% | |
| ATAGGGGCGGCTCCATCTAA+CGG | - | chr3_1:63300989-63301008 | Msa0367610:intron | 55.0% | |
| CTCTCACAAGTGCTCTTGGG+TGG | + | chr3_1:63301927-63301946 | None:intergenic | 55.0% | |
| ! | AATGAGGGTGTGGGGTTAGG+TGG | - | chr3_1:63302108-63302127 | Msa0367610:intron | 55.0% |
| GACTAGACTCTCAAGCTCCC+CGG | + | chr3_1:63302828-63302847 | None:intergenic | 55.0% | |
| TTCCCAGCAGCATGTCACCA+AGG | - | chr3_1:63303165-63303184 | Msa0367610:CDS | 55.0% | |
| ! | CTTCCTTGGTGACATGCTGC+TGG | + | chr3_1:63303171-63303190 | None:intergenic | 55.0% |
| GCTCCAGCACCATCAGGACA+CGG | - | chr3_1:63299494-63299513 | Msa0367610:intron | 60.0% | |
| CTCCAGCACCATCAGGACAC+GGG | - | chr3_1:63299495-63299514 | Msa0367610:intron | 60.0% | |
| ! | AACCCGTGTCCTGATGGTGC+TGG | + | chr3_1:63299500-63299519 | None:intergenic | 60.0% |
| TGGTGGCCTTTCCATAGGGG+CGG | - | chr3_1:63300976-63300995 | Msa0367610:intron | 60.0% | |
| ATGGAGCCGCCCCTATGGAA+AGG | + | chr3_1:63300985-63301004 | None:intergenic | 60.0% | |
| GTTAGATGGAGCCGCCCCTA+TGG | + | chr3_1:63300990-63301009 | None:intergenic | 60.0% | |
| AGGCCGCCATTAGGAGGAGA+GGG | + | chr3_1:63301088-63301107 | None:intergenic | 60.0% | |
| TAGGCCGCCATTAGGAGGAG+AGG | + | chr3_1:63301089-63301108 | None:intergenic | 60.0% | |
| ATGGAGCCGCCCCTATGGAT+AGG | + | chr3_1:63301108-63301127 | None:intergenic | 60.0% | |
| GTTAGATGGAGCCGCCCCTA+TGG | + | chr3_1:63300990-63301009 | None:intergenic | 60.0% | |
| TGGCGGCCTATCCATAGGGG+CGG | - | chr3_1:63301099-63301118 | Msa0367610:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 63298160 | 63303348 | 63298160 | ID=Msa0367610;Name=Msa0367610 |
| chr3_1 | mRNA | 63298160 | 63303348 | 63298160 | ID=Msa0367610-mRNA-1;Parent=Msa0367610;Name=Msa0367610-mRNA-1;_AED=0.11;_eAED=0.12;_QI=0|0.33|0.14|1|1|1|7|0|604 |
| chr3_1 | exon | 63302661 | 63303348 | 63302661 | ID=Msa0367610-mRNA-1:exon:12479;Parent=Msa0367610-mRNA-1 |
| chr3_1 | exon | 63301979 | 63302094 | 63301979 | ID=Msa0367610-mRNA-1:exon:12478;Parent=Msa0367610-mRNA-1 |
| chr3_1 | exon | 63301790 | 63301888 | 63301790 | ID=Msa0367610-mRNA-1:exon:12477;Parent=Msa0367610-mRNA-1 |
| chr3_1 | exon | 63301603 | 63301686 | 63301603 | ID=Msa0367610-mRNA-1:exon:12476;Parent=Msa0367610-mRNA-1 |
| chr3_1 | exon | 63299036 | 63299156 | 63299036 | ID=Msa0367610-mRNA-1:exon:12475;Parent=Msa0367610-mRNA-1 |
| chr3_1 | exon | 63298810 | 63298944 | 63298810 | ID=Msa0367610-mRNA-1:exon:12474;Parent=Msa0367610-mRNA-1 |
| chr3_1 | exon | 63298160 | 63298731 | 63298160 | ID=Msa0367610-mRNA-1:exon:12473;Parent=Msa0367610-mRNA-1 |
| chr3_1 | CDS | 63302661 | 63303348 | 63302661 | ID=Msa0367610-mRNA-1:cds;Parent=Msa0367610-mRNA-1 |
| chr3_1 | CDS | 63301979 | 63302094 | 63301979 | ID=Msa0367610-mRNA-1:cds;Parent=Msa0367610-mRNA-1 |
| chr3_1 | CDS | 63301790 | 63301888 | 63301790 | ID=Msa0367610-mRNA-1:cds;Parent=Msa0367610-mRNA-1 |
| chr3_1 | CDS | 63301603 | 63301686 | 63301603 | ID=Msa0367610-mRNA-1:cds;Parent=Msa0367610-mRNA-1 |
| chr3_1 | CDS | 63299036 | 63299156 | 63299036 | ID=Msa0367610-mRNA-1:cds;Parent=Msa0367610-mRNA-1 |
| chr3_1 | CDS | 63298810 | 63298944 | 63298810 | ID=Msa0367610-mRNA-1:cds;Parent=Msa0367610-mRNA-1 |
| chr3_1 | CDS | 63298160 | 63298731 | 63298160 | ID=Msa0367610-mRNA-1:cds;Parent=Msa0367610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
