Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460710 | XP_003600628.1 | 75.258 | 97 | 20 | 1 | 330 | 426 | 16 | 108 | 1.50e-35 | 146 |
| Msa0460710 | XP_003600628.1 | 86.218 | 312 | 19 | 3 | 67 | 354 | 19 | 330 | 0.0 | 545 |
| Msa0460710 | XP_003600628.1 | 97.872 | 47 | 1 | 0 | 422 | 468 | 326 | 372 | 8.32e-18 | 97.1 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460710 | G7J7Y5 | 75.258 | 97 | 20 | 1 | 330 | 426 | 16 | 108 | 7.14e-36 | 146 |
| Msa0460710 | G7J7Y5 | 86.218 | 312 | 19 | 3 | 67 | 354 | 19 | 330 | 0.0 | 545 |
| Msa0460710 | G7J7Y5 | 97.872 | 47 | 1 | 0 | 422 | 468 | 326 | 372 | 3.97e-18 | 97.1 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0460710 | Msa1125880 | 0.807161 | 5.787415e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0460710 | MtrunA17_Chr3g0109741 | 86.218 | 312 | 19 | 3 | 67 | 354 | 19 | 330 | 0.0 | 545 |
| Msa0460710 | MtrunA17_Chr3g0109741 | 75.258 | 97 | 20 | 1 | 330 | 426 | 16 | 108 | 1.38e-39 | 146 |
| Msa0460710 | MtrunA17_Chr3g0109741 | 97.872 | 47 | 1 | 0 | 422 | 468 | 326 | 372 | 7.65e-22 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 85 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCTAATCCATTGATCAATT+TGG | 0.110400 | 3_3:-58231037 | None:intergenic |
| CTAGTATATGGGAATGTATT+TGG | 0.168299 | 3_3:+58235654 | Msa0460710:three_prime_UTR |
| TGCCAGTACCAATTTGAAAA+TGG | 0.192956 | 3_3:+58230718 | Msa0460710:intron |
| GTTAAACAATTACTAGTATA+TGG | 0.201155 | 3_3:+58235642 | Msa0460710:three_prime_UTR |
| TTTCTTTCTTCAATAAATTC+TGG | 0.230320 | 3_3:+58235444 | Msa0460710:CDS |
| GGAAATAGGTGGATACTTAT+TGG | 0.257232 | 3_3:+58231197 | Msa0460710:intron |
| TCTAATCCATTGATCAATTT+GGG | 0.296377 | 3_3:-58231036 | None:intergenic |
| GCAATAGGTGCAATCTTATA+AGG | 0.310380 | 3_3:-58231516 | None:intergenic |
| CGTCGATGTTTGTGCGAATC+AGG | 0.314673 | 3_3:+58231306 | Msa0460710:CDS |
| ATCATATATTTGCAGCTTCC+AGG | 0.318748 | 3_3:+58231558 | Msa0460710:CDS |
| GTGGACCCACCCAATATAAA+AGG | 0.320502 | 3_3:-58229985 | None:intergenic |
| ATATTGATGGCTTCCACATT+TGG | 0.321977 | 3_3:+58231355 | Msa0460710:CDS |
| TATTGTTACACTGATATTGA+TGG | 0.337549 | 3_3:+58231342 | Msa0460710:CDS |
| GACATAGCTAGTAGCATAAC+TGG | 0.341201 | 3_3:-58235608 | None:intergenic |
| CTGAAGGAGAATTATAATCT+TGG | 0.345889 | 3_3:+58231384 | Msa0460710:CDS |
| TTCTTTCTTCAATAAATTCT+GGG | 0.349156 | 3_3:+58235445 | Msa0460710:CDS |
| AGTTCTTTAAACTCAAATTC+TGG | 0.355576 | 3_3:-58231135 | None:intergenic |
| TATTGATGGCTTCCACATTT+GGG | 0.392642 | 3_3:+58231356 | Msa0460710:CDS |
| CAGCTTCCAGGAGCTGTTGT+TGG | 0.398179 | 3_3:+58231570 | Msa0460710:CDS |
| TTAAACAATTACTAGTATAT+GGG | 0.400269 | 3_3:+58235643 | Msa0460710:three_prime_UTR |
| TTCTTGTAAACCACGTTCTT+CGG | 0.403145 | 3_3:+58229957 | Msa0460710:CDS |
| GCCAGTACCAATTTGAAAAT+GGG | 0.403406 | 3_3:+58230719 | Msa0460710:intron |
| TGAAGGAGAATTATAATCTT+GGG | 0.428469 | 3_3:+58231385 | Msa0460710:CDS |
| ACATCTCCACTTTACTCAAA+TGG | 0.429272 | 3_3:+58231162 | Msa0460710:CDS |
| CAAGGACATGTTATTAGAGT+TGG | 0.429738 | 3_3:+58234780 | Msa0460710:CDS |
| TTTGTGAAGCTTTGTTTGAA+TGG | 0.432989 | 3_3:+58231490 | Msa0460710:CDS |
| GGTGACTGATGGAGAAATAA+TGG | 0.435682 | 3_3:+58235497 | Msa0460710:CDS |
| CCACATTTGGGAACTTCTGA+AGG | 0.442607 | 3_3:+58231368 | Msa0460710:CDS |
| AACGTGGTTTACAAGAAACT+TGG | 0.445374 | 3_3:-58229951 | None:intergenic |
| AAGCTTCACAAAAGTTGTAA+TGG | 0.452754 | 3_3:-58231479 | None:intergenic |
| GCTTGTTCACTATAAGCAAT+AGG | 0.456269 | 3_3:-58231531 | None:intergenic |
| CAACTCTAATAACATGTCCT+TGG | 0.457753 | 3_3:-58230957 | None:intergenic |
| CAACTCTAATAACATGTCCT+TGG | 0.457753 | 3_3:-58234779 | None:intergenic |
| AACTCAAATTCTGGCAGAGA+AGG | 0.463127 | 3_3:-58231126 | None:intergenic |
| TATTACACAACAAAATTCAA+AGG | 0.465680 | 3_3:-58235557 | None:intergenic |
| GGGGCTCACAATGTGCATAA+AGG | 0.469263 | 3_3:+58235465 | Msa0460710:CDS |
| ATGGAGCTGAACTTACCAAT+AGG | 0.470950 | 3_3:+58235516 | Msa0460710:CDS |
| AGAAGCTTAGGGAATGGTTA+AGG | 0.474765 | 3_3:-58230798 | None:intergenic |
| AGGATTGATCACATAGTAGC+AGG | 0.476046 | 3_3:-58234718 | None:intergenic |
| TTGTGAAGCTTTGTTTGAAT+GGG | 0.480469 | 3_3:+58231491 | Msa0460710:CDS |
| AAGGGCTTGATTCTCTTGAA+TGG | 0.482559 | 3_3:+58230856 | Msa0460710:CDS |
| AAGGGCTTGATTCTCTTGAA+TGG | 0.482559 | 3_3:+58234678 | Msa0460710:CDS |
| ATTTGCAGATATTCATATCC+AGG | 0.485030 | 3_3:+58231624 | Msa0460710:CDS |
| AGGATTGAACACATAGTAGC+AGG | 0.485532 | 3_3:-58230896 | None:intergenic |
| TTATAACCAACAACAGCTCC+TGG | 0.485794 | 3_3:-58231576 | None:intergenic |
| AAATCTCCCAAATTGATCAA+TGG | 0.490708 | 3_3:+58231030 | Msa0460710:CDS |
| TCTCATCTGACACTAACAAA+TGG | 0.498663 | 3_3:+58231070 | Msa0460710:CDS |
| ATTACACAACAAAATTCAAA+GGG | 0.499836 | 3_3:-58235556 | None:intergenic |
| ATAACATGTCCTTGGATACA+AGG | 0.509978 | 3_3:-58230949 | None:intergenic |
| ATAACATGTCCTTGGATACA+AGG | 0.509978 | 3_3:-58234771 | None:intergenic |
| CAAACACTTGCTTCATGCAA+GGG | 0.515637 | 3_3:+58230838 | Msa0460710:CDS |
| CAAACACTTGCTTCATGCAA+GGG | 0.515637 | 3_3:+58234660 | Msa0460710:CDS |
| GCAAACACTTGCTTCATGCA+AGG | 0.515681 | 3_3:+58230837 | Msa0460710:CDS |
| GCAAACACTTGCTTCATGCA+AGG | 0.515681 | 3_3:+58234659 | Msa0460710:CDS |
| GGAAGGGACTTGGTGACTGA+TGG | 0.518508 | 3_3:+58235486 | Msa0460710:CDS |
| CCTTCAGAAGTTCCCAAATG+TGG | 0.519109 | 3_3:-58231368 | None:intergenic |
| TTGAATGGTTACAATTGTCA+TGG | 0.521707 | 3_3:+58234693 | Msa0460710:CDS |
| CTGCGTCTTTCTTTCTAATG+CGG | 0.522560 | 3_3:-58230045 | None:intergenic |
| GCAAAGTTAAATCGATGGAA+TGG | 0.533682 | 3_3:-58231104 | None:intergenic |
| ATTGCACCATTTGAGTAAAG+TGG | 0.537668 | 3_3:-58231168 | None:intergenic |
| CTCACAATGTGCATAAAGGA+AGG | 0.549196 | 3_3:+58235469 | Msa0460710:CDS |
| CAACTGAGAAGCTTAGGGAA+TGG | 0.553318 | 3_3:-58230804 | None:intergenic |
| CAACTGAGAAGCTTAGGGAA+TGG | 0.553318 | 3_3:-58234626 | None:intergenic |
| ATCCCTCTACCTTGTATCCA+AGG | 0.553583 | 3_3:+58230940 | Msa0460710:CDS |
| ATCCCTCTACCTTGTATCCA+AGG | 0.553583 | 3_3:+58234762 | Msa0460710:CDS |
| TTGAATGGTTACAATAGTGA+TGG | 0.554721 | 3_3:+58230871 | Msa0460710:CDS |
| TGTGCATAAAGGAAGGGACT+TGG | 0.559038 | 3_3:+58235476 | Msa0460710:CDS |
| TGACACTAACAAATGGAAGA+AGG | 0.563673 | 3_3:+58231077 | Msa0460710:CDS |
| TCTTTCTTCAATAAATTCTG+GGG | 0.576558 | 3_3:+58235446 | Msa0460710:CDS |
| ACGTGGTTTACAAGAAACTT+GGG | 0.581174 | 3_3:-58229950 | None:intergenic |
| AGAAGGCAAAGTTAAATCGA+TGG | 0.587753 | 3_3:-58231109 | None:intergenic |
| TGTCCTTGGATACAAGGTAG+AGG | 0.596618 | 3_3:-58230943 | None:intergenic |
| TGTCCTTGGATACAAGGTAG+AGG | 0.596618 | 3_3:-58234765 | None:intergenic |
| GGAGATCAGAAAATTCGTTA+CGG | 0.598990 | 3_3:+58230108 | Msa0460710:CDS |
| CGCTGATATAGAACTTGGTG+TGG | 0.599595 | 3_3:-58230004 | None:intergenic |
| GTCCTTGGATACAAGGTAGA+GGG | 0.607514 | 3_3:-58230942 | None:intergenic |
| GTCCTTGGATACAAGGTAGA+GGG | 0.607514 | 3_3:-58234764 | None:intergenic |
| GAGAGACTCGGTGGTGACGT+CGG | 0.621615 | 3_3:+58230087 | Msa0460710:CDS |
| CAGTGTAACAATAGTAAACA+CGG | 0.624585 | 3_3:-58231332 | None:intergenic |
| CGCAAGAAACAAGAGAGACT+CGG | 0.624861 | 3_3:+58230075 | Msa0460710:CDS |
| GGATTGATCACATAGTAGCA+GGG | 0.637389 | 3_3:-58234717 | None:intergenic |
| GGATTGAACACATAGTAGCA+GGG | 0.642112 | 3_3:-58230895 | None:intergenic |
| TCACAATGTGCATAAAGGAA+GGG | 0.671464 | 3_3:+58235470 | Msa0460710:CDS |
| AAAGGAATGTCCGAAGAACG+TGG | 0.698740 | 3_3:-58229967 | None:intergenic |
| AAGAAACAAGAGAGACTCGG+TGG | 0.731413 | 3_3:+58230078 | Msa0460710:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAATTATTTTTTTA+TGG | - | chr3_3:58232715-58232734 | None:intergenic | 0.0% |
| !!! | AAAATAATTTTTTTTTCACA+AGG | + | chr3_3:58232719-58232738 | Msa0460710:intron | 10.0% |
| !!! | AAGAATAATTGTTTTTTTTT+AGG | + | chr3_3:58232749-58232768 | Msa0460710:intron | 10.0% |
| !!! | AGAATAATTGTTTTTTTTTA+GGG | + | chr3_3:58232750-58232769 | Msa0460710:intron | 10.0% |
| !!! | AAAAAAGATTTTTTTTTTGA+AGG | + | chr3_3:58233628-58233647 | Msa0460710:intron | 10.0% |
| !!! | AAAAAGATTTTTTTTTTGAA+GGG | + | chr3_3:58233629-58233648 | Msa0460710:intron | 10.0% |
| !!! | CTTTTTTTTTTTTTTTTTGA+AGG | - | chr3_3:58233680-58233699 | None:intergenic | 10.0% |
| !! | ATATGTAAAATTTAGTGATA+GGG | - | chr3_3:58230151-58230170 | None:intergenic | 15.0% |
| !! | AATATGTAAAATTTAGTGAT+AGG | - | chr3_3:58230152-58230171 | None:intergenic | 15.0% |
| !!! | TAATGATAGTAACAATTTTA+AGG | + | chr3_3:58230990-58231009 | Msa0460710:intron | 15.0% |
| !! | TTAAACAATTACTAGTATAT+GGG | + | chr3_3:58231870-58231889 | Msa0460710:intron | 15.0% |
| !!! | ATTCTTTTGAACAATATATT+TGG | + | chr3_3:58232102-58232121 | Msa0460710:intron | 15.0% |
| !!! | TTTTTTTAAATCACAAATGT+TGG | + | chr3_3:58232174-58232193 | Msa0460710:intron | 15.0% |
| !! | AAAAAATGTTATATTGATGT+TGG | + | chr3_3:58232213-58232232 | Msa0460710:intron | 15.0% |
| !! | AAAATTAAAATTTCTTTCGA+CGG | - | chr3_3:58232869-58232888 | None:intergenic | 15.0% |
| !! | TTTATTTGACATGATTTAAT+TGG | + | chr3_3:58233374-58233393 | Msa0460710:intron | 15.0% |
| !!! | CAATTGTGATTTTTTTTTTT+TGG | - | chr3_3:58233506-58233525 | None:intergenic | 15.0% |
| !!! | AAAGCTTAATCTTTTTTAAA+AGG | - | chr3_3:58233593-58233612 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTGAAGGA+GGG | - | chr3_3:58233676-58233695 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTGAAGG+AGG | - | chr3_3:58233677-58233696 | None:intergenic | 15.0% |
| !! | ATATGTAAAATTTAGTGATA+GGG | - | chr3_3:58230151-58230170 | None:intergenic | 15.0% |
| !! | AATATGTAAAATTTAGTGAT+AGG | - | chr3_3:58230152-58230171 | None:intergenic | 15.0% |
| !!! | TAATGATAGTAACAATTTTA+AGG | + | chr3_3:58230990-58231009 | Msa0460710:intron | 15.0% |
| !! | TTAAACAATTACTAGTATAT+GGG | + | chr3_3:58231870-58231889 | Msa0460710:intron | 15.0% |
| !!! | TAGCAATAGTTTTACATTTT+AGG | + | chr3_3:58230183-58230202 | Msa0460710:intron | 20.0% |
| !!! | AGCAATAGTTTTACATTTTA+GGG | + | chr3_3:58230184-58230203 | Msa0460710:intron | 20.0% |
| !! | TCTCATCTATACAATTAAAT+AGG | - | chr3_3:58230467-58230486 | None:intergenic | 20.0% |
| !! | AAAATTGTTACTATCATTAG+AGG | - | chr3_3:58230989-58231008 | None:intergenic | 20.0% |
| !!! | AATTTTTTGGAATCATAGAA+TGG | - | chr3_3:58231411-58231430 | None:intergenic | 20.0% |
| !! | ATGATTCCAAAAAATTTAGA+TGG | + | chr3_3:58231415-58231434 | Msa0460710:CDS | 20.0% |
| !!! | TAATCTCCATCTAAATTTTT+TGG | - | chr3_3:58231424-58231443 | None:intergenic | 20.0% |
| !! | TTTCTTTCTTCAATAAATTC+TGG | + | chr3_3:58231669-58231688 | Msa0460710:intron | 20.0% |
| !! | TTCTTTCTTCAATAAATTCT+GGG | + | chr3_3:58231670-58231689 | Msa0460710:intron | 20.0% |
| !! | TACACAAAACAAAATTCAAA+GGG | - | chr3_3:58231784-58231803 | None:intergenic | 20.0% |
| !! | TTACACAAAACAAAATTCAA+AGG | - | chr3_3:58231785-58231804 | None:intergenic | 20.0% |
| !!! | TTTGTTTTGTGTAATAATGA+TGG | + | chr3_3:58231791-58231810 | Msa0460710:intron | 20.0% |
| !! | GTTAAACAATTACTAGTATA+TGG | + | chr3_3:58231869-58231888 | Msa0460710:intron | 20.0% |
| !! | ACCTATATATACATAAAGTT+TGG | + | chr3_3:58231998-58232017 | Msa0460710:intron | 20.0% |
| !! | ACCAAACTTTATGTATATAT+AGG | - | chr3_3:58232002-58232021 | None:intergenic | 20.0% |
| !! | AATAACACTATTAGTATTAC+AGG | + | chr3_3:58232079-58232098 | Msa0460710:intron | 20.0% |
| !!! | TTTATTGTTTTTGTCATTGT+CGG | + | chr3_3:58232259-58232278 | Msa0460710:intron | 20.0% |
| !!! | AGTGACATACATTTTTTTTT+TGG | + | chr3_3:58232487-58232506 | Msa0460710:intron | 20.0% |
| !! | AGATTAATCATATCTGAAAA+TGG | - | chr3_3:58232844-58232863 | None:intergenic | 20.0% |
| !! | ATTTCACATATCATTTCTTA+AGG | - | chr3_3:58233020-58233039 | None:intergenic | 20.0% |
| !! | TAAGTAGTTAAAGACATAAT+AGG | + | chr3_3:58233072-58233091 | Msa0460710:intron | 20.0% |
| !!! | ATAAACTCGTTTTAATAGAA+AGG | + | chr3_3:58233246-58233265 | Msa0460710:intron | 20.0% |
| !! | ATGTAAAAAAATTACAGTGT+CGG | - | chr3_3:58233288-58233307 | None:intergenic | 20.0% |
| !!! | CTTTATAATACCATTTTTGT+AGG | + | chr3_3:58233326-58233345 | Msa0460710:intron | 20.0% |
| !! | AAATGAAAAAACAAAATGGT+GGG | - | chr3_3:58233709-58233728 | None:intergenic | 20.0% |
| !! | AAAATGAAAAAACAAAATGG+TGG | - | chr3_3:58233710-58233729 | None:intergenic | 20.0% |
| !!! | TAGCAATAGTTTTACATTTT+AGG | + | chr3_3:58230183-58230202 | Msa0460710:intron | 20.0% |
| !!! | AGCAATAGTTTTACATTTTA+GGG | + | chr3_3:58230184-58230203 | Msa0460710:intron | 20.0% |
| !!! | TTAAATTATTATTGGTGTTG+AGG | + | chr3_3:58234175-58234194 | Msa0460710:intron | 20.0% |
| !! | TCTCATCTATACAATTAAAT+AGG | - | chr3_3:58230467-58230486 | None:intergenic | 20.0% |
| !! | AAAATTGTTACTATCATTAG+TGG | - | chr3_3:58230989-58231008 | None:intergenic | 20.0% |
| !! | AATTTATAGGATTCATAGAA+TGG | - | chr3_3:58235211-58235230 | None:intergenic | 20.0% |
| !! | ATGAATCCTATAAATTTAGA+TGG | + | chr3_3:58235215-58235234 | Msa0460710:intron | 20.0% |
| !! | TAATCTCCATCTAAATTTAT+AGG | - | chr3_3:58235224-58235243 | None:intergenic | 20.0% |
| !! | TTTCTTTCTTCAATAAATTC+TGG | + | chr3_3:58231669-58231688 | Msa0460710:intron | 20.0% |
| !! | TTCTTTCTTCAATAAATTCT+GGG | + | chr3_3:58231670-58231689 | Msa0460710:intron | 20.0% |
| !! | ATTACACAACAAAATTCAAA+GGG | - | chr3_3:58235559-58235578 | None:intergenic | 20.0% |
| !! | TATTACACAACAAAATTCAA+AGG | - | chr3_3:58235560-58235579 | None:intergenic | 20.0% |
| !!! | ATTTTGTTGTGTAATAATGA+TGG | + | chr3_3:58235564-58235583 | Msa0460710:three_prime_UTR | 20.0% |
| !! | GTTAAACAATTACTAGTATA+TGG | + | chr3_3:58231869-58231888 | Msa0460710:intron | 20.0% |
| ! | GTAATCACATATTTCATTGT+CGG | - | chr3_3:58230279-58230298 | None:intergenic | 25.0% |
| ! | TTTAATTATTATCAGTGTCG+AGG | + | chr3_3:58230316-58230335 | Msa0460710:intron | 25.0% |
| !!! | CATTTTTTCACGTTTAAACT+TGG | + | chr3_3:58230379-58230398 | Msa0460710:intron | 25.0% |
| ! | GTTGATCAGAATGAAAAAAA+AGG | + | chr3_3:58230766-58230785 | Msa0460710:CDS | 25.0% |
| ! | TCTAATCCATTGATCAATTT+GGG | - | chr3_3:58231039-58231058 | None:intergenic | 25.0% |
| ! | TTCTAATCCATTGATCAATT+TGG | - | chr3_3:58231040-58231059 | None:intergenic | 25.0% |
| ! | AGTTCTTTAAACTCAAATTC+TGG | - | chr3_3:58231138-58231157 | None:intergenic | 25.0% |
| !! | TTAGTTCACAATAGTTTTCT+TGG | - | chr3_3:58231233-58231252 | None:intergenic | 25.0% |
| ! | TATTGTTACACTGATATTGA+TGG | + | chr3_3:58231342-58231361 | Msa0460710:CDS | 25.0% |
| ! | TGAAGGAGAATTATAATCTT+GGG | + | chr3_3:58231385-58231404 | Msa0460710:CDS | 25.0% |
| !!! | TAATTTTGACACAGGAAATT+TGG | + | chr3_3:58231596-58231615 | Msa0460710:CDS | 25.0% |
| !!! | AATTTTGACACAGGAAATTT+GGG | + | chr3_3:58231597-58231616 | Msa0460710:CDS | 25.0% |
| ! | TCTTTCTTCAATAAATTCTG+GGG | + | chr3_3:58231671-58231690 | Msa0460710:intron | 25.0% |
| !! | AACTTTTCAATTTCTCCTAT+TGG | - | chr3_3:58231759-58231778 | None:intergenic | 25.0% |
| !! | CATAAAGCAATTTTTCTTCT+TGG | + | chr3_3:58231970-58231989 | Msa0460710:intron | 25.0% |
| !!! | ATTTGGTGTAGTTTTTTTAC+AGG | + | chr3_3:58232119-58232138 | Msa0460710:intron | 25.0% |
| !! | ATCATACCATTTGATCTTTT+AGG | + | chr3_3:58232546-58232565 | Msa0460710:intron | 25.0% |
| ! | ATCATATCTGAAAATGGTAT+TGG | - | chr3_3:58232838-58232857 | None:intergenic | 25.0% |
| ! | AAACATCATATAATTTGGGA+CGG | - | chr3_3:58232921-58232940 | None:intergenic | 25.0% |
| !! | TCCCAAATTATATGATGTTT+TGG | + | chr3_3:58232921-58232940 | Msa0460710:intron | 25.0% |
| ! | GCCAAAACATCATATAATTT+GGG | - | chr3_3:58232925-58232944 | None:intergenic | 25.0% |
| ! | TGCCAAAACATCATATAATT+TGG | - | chr3_3:58232926-58232945 | None:intergenic | 25.0% |
| ! | TTGTAAAGCGACATATAATT+TGG | + | chr3_3:58233122-58233141 | Msa0460710:intron | 25.0% |
| ! | TGTAAAGCGACATATAATTT+GGG | + | chr3_3:58233123-58233142 | Msa0460710:intron | 25.0% |
| ! | TAGAAATCAACCTACAAAAA+TGG | - | chr3_3:58233339-58233358 | None:intergenic | 25.0% |
| ! | CATGTCAAATAAATATGTGT+AGG | - | chr3_3:58233367-58233386 | None:intergenic | 25.0% |
| ! | AATAGAGATATTTCTTTGCA+CGG | - | chr3_3:58233428-58233447 | None:intergenic | 25.0% |
| !! | AATTTGATGTGTGTTTTCAT+CGG | + | chr3_3:58233544-58233563 | Msa0460710:intron | 25.0% |
| ! | GGGAAAATGAAAAAACAAAA+TGG | - | chr3_3:58233713-58233732 | None:intergenic | 25.0% |
| ! | AAGTGAATTACAAGAAACTT+GGG | - | chr3_3:58233768-58233787 | None:intergenic | 25.0% |
| !! | ATTCACTTGAAAATTTTCGA+AGG | + | chr3_3:58233780-58233799 | Msa0460710:intron | 25.0% |
| !!! | TTAGGACATTCCTTTATTTT+GGG | + | chr3_3:58233832-58233851 | Msa0460710:intron | 25.0% |
| ! | TGTGAATATACGTATGAATT+GGG | - | chr3_3:58234413-58234432 | None:intergenic | 25.0% |
| ! | GTTGATCAGAATGAAAAAAA+AGG | + | chr3_3:58230766-58230785 | Msa0460710:CDS | 25.0% |
| ! | AGTTCTTTAAACTCAAATTC+TGG | - | chr3_3:58231138-58231157 | None:intergenic | 25.0% |
| !! | ATAATGTTTTTCACATTTGG+TGG | - | chr3_3:58235124-58235143 | None:intergenic | 25.0% |
| !! | TGCATAATGTTTTTCACATT+TGG | - | chr3_3:58235127-58235146 | None:intergenic | 25.0% |
| ! | TGAAGGAGAATTATAATCTT+GGG | + | chr3_3:58231385-58231404 | Msa0460710:CDS | 25.0% |
| ! | TCTTTCTTCAATAAATTCTG+GGG | + | chr3_3:58231671-58231690 | Msa0460710:intron | 25.0% |
| !! | AACTTTTCAATTTCTCCTAT+TGG | - | chr3_3:58231759-58231778 | None:intergenic | 25.0% |
| ! | TTCGGACATTCCTTTTATAT+TGG | + | chr3_3:58229975-58229994 | Msa0460710:CDS | 30.0% |
| ! | TCGGACATTCCTTTTATATT+GGG | + | chr3_3:58229976-58229995 | Msa0460710:CDS | 30.0% |
| ! | ACATTCCTTTTATATTGGGT+GGG | + | chr3_3:58229980-58229999 | Msa0460710:CDS | 30.0% |
| !! | AAATTCATTGGAAAGTGTTC+GGG | - | chr3_3:58230527-58230546 | None:intergenic | 30.0% |
| !! | GAAATTCATTGGAAAGTGTT+CGG | - | chr3_3:58230528-58230547 | None:intergenic | 30.0% |
| TGTGAACATACGTATGAATT+GGG | - | chr3_3:58230577-58230596 | None:intergenic | 30.0% | |
| CTAGTTTGAATCTATGAACA+TGG | + | chr3_3:58230645-58230664 | Msa0460710:intron | 30.0% | |
| GATCAGAATGAAAAAAAAGG+TGG | + | chr3_3:58230769-58230788 | Msa0460710:CDS | 30.0% | |
| ! | ATTTTCAACTGAGAAGCTTA+GGG | - | chr3_3:58230812-58230831 | None:intergenic | 30.0% |
| ! | AATTTTCAACTGAGAAGCTT+AGG | - | chr3_3:58230813-58230832 | None:intergenic | 30.0% |
| TTGAATGGTTACAATAGTGA+TGG | + | chr3_3:58230871-58230890 | Msa0460710:CDS | 30.0% | |
| !!! | TTTTAAGGTTGTCCTTATTG+AGG | + | chr3_3:58231005-58231024 | Msa0460710:intron | 30.0% |
| AAATCTCCCAAATTGATCAA+TGG | + | chr3_3:58231030-58231049 | Msa0460710:CDS | 30.0% | |
| !!! | TGCCTAATTTTTTTGAAGAC+TGG | + | chr3_3:58231259-58231278 | Msa0460710:CDS | 30.0% |
| GACCAGTCTTCAAAAAAATT+AGG | - | chr3_3:58231264-58231283 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTGAAGACTGGTCA+TGG | + | chr3_3:58231265-58231284 | Msa0460710:CDS | 30.0% |
| CAGTGTAACAATAGTAAACA+CGG | - | chr3_3:58231335-58231354 | None:intergenic | 30.0% | |
| CTGAAGGAGAATTATAATCT+TGG | + | chr3_3:58231384-58231403 | Msa0460710:CDS | 30.0% | |
| AAGCTTCACAAAAGTTGTAA+TGG | - | chr3_3:58231482-58231501 | None:intergenic | 30.0% | |
| !! | TTTGTGAAGCTTTGTTTGAA+TGG | + | chr3_3:58231490-58231509 | Msa0460710:CDS | 30.0% |
| !! | TTGTGAAGCTTTGTTTGAAT+GGG | + | chr3_3:58231491-58231510 | Msa0460710:CDS | 30.0% |
| !! | GTTGGTTATAATTTTGACAC+AGG | + | chr3_3:58231588-58231607 | Msa0460710:CDS | 30.0% |
| ATTTGCAGATATTCATATCC+AGG | + | chr3_3:58231624-58231643 | Msa0460710:CDS | 30.0% | |
| CTAGTATATGGGAATGTATT+TGG | + | chr3_3:58231881-58231900 | Msa0460710:intron | 30.0% | |
| TCTTGACCTAAAAGATCAAA+TGG | - | chr3_3:58232555-58232574 | None:intergenic | 30.0% | |
| TATATGCGATAGATAGACTT+CGG | + | chr3_3:58232612-58232631 | Msa0460710:intron | 30.0% | |
| CTAAACTTCAGTTAAGGAAT+GGG | - | chr3_3:58233733-58233752 | None:intergenic | 30.0% | |
| TCTAAACTTCAGTTAAGGAA+TGG | - | chr3_3:58233734-58233753 | None:intergenic | 30.0% | |
| GTCTATCTAAACTTCAGTTA+AGG | - | chr3_3:58233739-58233758 | None:intergenic | 30.0% | |
| CAAGTGAATTACAAGAAACT+TGG | - | chr3_3:58233769-58233788 | None:intergenic | 30.0% | |
| !! | CTTAGGACATTCCTTTATTT+TGG | + | chr3_3:58233831-58233850 | Msa0460710:intron | 30.0% |
| !!! | CATTTTAGGGTTTGTTAACT+AGG | + | chr3_3:58234054-58234073 | Msa0460710:intron | 30.0% |
| TAACCACATATATCGTTGTT+GGG | - | chr3_3:58234136-58234155 | None:intergenic | 30.0% | |
| CTGTGAATATACGTATGAAT+TGG | - | chr3_3:58234414-58234433 | None:intergenic | 30.0% | |
| CAATTCATACGTATATTCAC+AGG | + | chr3_3:58234412-58234431 | Msa0460710:intron | 30.0% | |
| TGCCAGTATCAATTTGAAAA+TGG | + | chr3_3:58234540-58234559 | Msa0460710:intron | 30.0% | |
| GCCAGTATCAATTTGAAAAT+GGG | + | chr3_3:58234541-58234560 | Msa0460710:intron | 30.0% | |
| ! | ACCCATTTTCAAATTGATAC+TGG | - | chr3_3:58234545-58234564 | None:intergenic | 30.0% |
| GATCAGAATGAAAAAAAAGG+TGG | + | chr3_3:58230769-58230788 | Msa0460710:CDS | 30.0% | |
| ! | ATTTTCAACTGAGAAGCTTA+GGG | - | chr3_3:58230812-58230831 | None:intergenic | 30.0% |
| ! | AATTTTCAACTGAGAAGCTT+AGG | - | chr3_3:58230813-58230832 | None:intergenic | 30.0% |
| TTGAATGGTTACAATTGTCA+TGG | + | chr3_3:58234693-58234712 | Msa0460710:CDS | 30.0% | |
| !!! | TTTTAAGGTTGTGCTTATTG+AGG | + | chr3_3:58234827-58234846 | Msa0460710:intron | 30.0% |
| AAATCTCCCAAATTGATCAA+TGG | + | chr3_3:58231030-58231049 | Msa0460710:CDS | 30.0% | |
| TCTAGTCCATTGATCAATTT+GGG | - | chr3_3:58234861-58234880 | None:intergenic | 30.0% | |
| !!! | TGCCTAATTTTTTTCAAGAC+TGG | + | chr3_3:58235081-58235100 | Msa0460710:intron | 30.0% |
| GACCAGTCTTGAAAAAAATT+AGG | - | chr3_3:58235086-58235105 | None:intergenic | 30.0% | |
| ! | ACATTTGGTGGTTTCAAATT+AGG | - | chr3_3:58235112-58235131 | None:intergenic | 30.0% |
| ATGCATTACACTGATATTGA+TGG | + | chr3_3:58235142-58235161 | Msa0460710:intron | 30.0% | |
| ! | ATATTGATGGTTTCCACATT+TGG | + | chr3_3:58235155-58235174 | Msa0460710:intron | 30.0% |
| ! | TATTGATGGTTTCCACATTT+GGG | + | chr3_3:58235156-58235175 | Msa0460710:intron | 30.0% |
| CTGAAGGAGAATTATAATCT+TGG | + | chr3_3:58231384-58231403 | Msa0460710:CDS | 30.0% | |
| AAGCTTCACAAAAGTTGTAA+TGG | - | chr3_3:58231482-58231501 | None:intergenic | 30.0% | |
| !! | TTTGTGAAGCTTTGTTTGAA+TGG | + | chr3_3:58231490-58231509 | Msa0460710:CDS | 30.0% |
| !! | TTGTGAAGCTTTGTTTGAAT+GGG | + | chr3_3:58231491-58231510 | Msa0460710:CDS | 30.0% |
| ATTTGCAGATATTCATATCC+AGG | + | chr3_3:58231624-58231643 | Msa0460710:CDS | 30.0% | |
| CTAGTATATGGGAATGTATT+TGG | + | chr3_3:58231881-58231900 | Msa0460710:intron | 30.0% | |
| ! | TCATACAGCAATTTTCTTCT+TGG | + | chr3_3:58235737-58235756 | Msa0460710:three_prime_UTR | 30.0% |
| ACGTGGTTTACAAGAAACTT+GGG | - | chr3_3:58229953-58229972 | None:intergenic | 35.0% | |
| AACGTGGTTTACAAGAAACT+TGG | - | chr3_3:58229954-58229973 | None:intergenic | 35.0% | |
| TTCTTGTAAACCACGTTCTT+CGG | + | chr3_3:58229957-58229976 | Msa0460710:CDS | 35.0% | |
| ! | GACATTCCTTTTATATTGGG+TGG | + | chr3_3:58229979-58229998 | Msa0460710:CDS | 35.0% |
| !! | TTTTGCGCTGATATAGAACT+TGG | - | chr3_3:58230012-58230031 | None:intergenic | 35.0% |
| GGAGATCAGAAAATTCGTTA+CGG | + | chr3_3:58230108-58230127 | Msa0460710:CDS | 35.0% | |
| !!! | CATTTTAGGGTTTGTTAACC+AGG | + | chr3_3:58230197-58230216 | Msa0460710:intron | 35.0% |
| TTTGTTAACCAGGTTGCATA+CGG | + | chr3_3:58230207-58230226 | Msa0460710:intron | 35.0% | |
| TTAGGCTTGTGGAAATTCAT+TGG | - | chr3_3:58230539-58230558 | None:intergenic | 35.0% | |
| !! | GGGTTAATTGACTTGACTTT+AGG | - | chr3_3:58230557-58230576 | None:intergenic | 35.0% |
| CTGTGAACATACGTATGAAT+TGG | - | chr3_3:58230578-58230597 | None:intergenic | 35.0% | |
| CAATTCATACGTATGTTCAC+AGG | + | chr3_3:58230576-58230595 | Msa0460710:intron | 35.0% | |
| ! | TGTTTCTCATGATAGCTTTG+TGG | + | chr3_3:58230687-58230706 | Msa0460710:intron | 35.0% |
| TGCCAGTACCAATTTGAAAA+TGG | + | chr3_3:58230718-58230737 | Msa0460710:intron | 35.0% | |
| GCCAGTACCAATTTGAAAAT+GGG | + | chr3_3:58230719-58230738 | Msa0460710:intron | 35.0% | |
| ! | ACCCATTTTCAAATTGGTAC+TGG | - | chr3_3:58230723-58230742 | None:intergenic | 35.0% |
| ! | GAGATGACCCATTTTCAAAT+TGG | - | chr3_3:58230729-58230748 | None:intergenic | 35.0% |
| !! | ATAGTAGAGTGTTTTGTGAG+AGG | - | chr3_3:58230919-58230938 | None:intergenic | 35.0% |
| ATAACATGTCCTTGGATACA+AGG | - | chr3_3:58230952-58230971 | None:intergenic | 35.0% | |
| CAACTCTAATAACATGTCCT+TGG | - | chr3_3:58230960-58230979 | None:intergenic | 35.0% | |
| CAAGGACATGTTATTAGAGT+TGG | + | chr3_3:58230958-58230977 | Msa0460710:intron | 35.0% | |
| TCTCATCTGACACTAACAAA+TGG | + | chr3_3:58231070-58231089 | Msa0460710:CDS | 35.0% | |
| TGACACTAACAAATGGAAGA+AGG | + | chr3_3:58231077-58231096 | Msa0460710:CDS | 35.0% | |
| GCAAAGTTAAATCGATGGAA+TGG | - | chr3_3:58231107-58231126 | None:intergenic | 35.0% | |
| AGAAGGCAAAGTTAAATCGA+TGG | - | chr3_3:58231112-58231131 | None:intergenic | 35.0% | |
| ACATCTCCACTTTACTCAAA+TGG | + | chr3_3:58231162-58231181 | Msa0460710:CDS | 35.0% | |
| ATTGCACCATTTGAGTAAAG+TGG | - | chr3_3:58231171-58231190 | None:intergenic | 35.0% | |
| GGAAATAGGTGGATACTTAT+TGG | + | chr3_3:58231197-58231216 | Msa0460710:intron | 35.0% | |
| ! | ATATTGATGGCTTCCACATT+TGG | + | chr3_3:58231355-58231374 | Msa0460710:CDS | 35.0% |
| ! | TATTGATGGCTTCCACATTT+GGG | + | chr3_3:58231356-58231375 | Msa0460710:CDS | 35.0% |
| AAACATTATGCATGACACTC+TGG | - | chr3_3:58231449-58231468 | None:intergenic | 35.0% | |
| GCAATAGGTGCAATCTTATA+AGG | - | chr3_3:58231519-58231538 | None:intergenic | 35.0% | |
| GCTTGTTCACTATAAGCAAT+AGG | - | chr3_3:58231534-58231553 | None:intergenic | 35.0% | |
| ATCATATATTTGCAGCTTCC+AGG | + | chr3_3:58231558-58231577 | Msa0460710:CDS | 35.0% | |
| CAACAATTGAAGTTCATACC+TGG | - | chr3_3:58231645-58231664 | None:intergenic | 35.0% | |
| TCACAATGTGCATAAAGGAA+GGG | + | chr3_3:58231695-58231714 | Msa0460710:intron | 35.0% | |
| GTCTGATTAGTGTCTATATC+AGG | + | chr3_3:58232020-58232039 | Msa0460710:intron | 35.0% | |
| GGTTATGTAAATGCATTCCT+AGG | + | chr3_3:58232041-58232060 | Msa0460710:intron | 35.0% | |
| TTCAAGAGAATGTAGTTCCT+AGG | - | chr3_3:58232061-58232080 | None:intergenic | 35.0% | |
| ATATAGGCTTAAAGACATCG+TGG | - | chr3_3:58232597-58232616 | None:intergenic | 35.0% | |
| GAAGTCTATCTATCGCATAT+AGG | - | chr3_3:58232613-58232632 | None:intergenic | 35.0% | |
| TTCTTGTAAACCACGTTCTT+AGG | + | chr3_3:58229957-58229976 | Msa0460710:CDS | 35.0% | |
| !!! | GACATTCCTTTATTTTGGGT+GGG | + | chr3_3:58233836-58233855 | Msa0460710:intron | 35.0% |
| !! | TTTTGCGCTGATATAGAACT+TGG | - | chr3_3:58230012-58230031 | None:intergenic | 35.0% |
| GGAGATCAGAAAATTCGTTA+CGG | + | chr3_3:58230108-58230127 | Msa0460710:CDS | 35.0% | |
| GTAACCACATATATCGTTGT+TGG | - | chr3_3:58234137-58234156 | None:intergenic | 35.0% | |
| GGAAATTCATGGAAAGTGAT+CGG | - | chr3_3:58234365-58234384 | None:intergenic | 35.0% | |
| TTTAGGCTTGTGGAAATTCA+TGG | - | chr3_3:58230540-58230559 | None:intergenic | 35.0% | |
| !! | GGGTTAATTGACTTGACTTT+AGG | - | chr3_3:58230557-58230576 | None:intergenic | 35.0% |
| CTAGTTTGAATCAATGAGCA+TGG | + | chr3_3:58234479-58234498 | Msa0460710:intron | 35.0% | |
| ! | GAATTCTCATGATAGCTTTG+TGG | + | chr3_3:58234509-58234528 | Msa0460710:intron | 35.0% |
| ATTTGAAAATGGGTCATCTC+AGG | + | chr3_3:58230729-58230748 | Msa0460710:CDS | 35.0% | |
| !! | ATAGTAGAGTGTTTTGTGAG+AGG | - | chr3_3:58230919-58230938 | None:intergenic | 35.0% |
| ATAACATGTCCTTGGATACA+AGG | - | chr3_3:58230952-58230971 | None:intergenic | 35.0% | |
| CAACTCTAATAACATGTCCT+TGG | - | chr3_3:58230960-58230979 | None:intergenic | 35.0% | |
| CAAGGACATGTTATTAGAGT+TGG | + | chr3_3:58230958-58230977 | Msa0460710:intron | 35.0% | |
| GTCTAGTCCATTGATCAATT+TGG | - | chr3_3:58234862-58234881 | None:intergenic | 35.0% | |
| TCTCATCTGACACTAACAAA+TGG | + | chr3_3:58231070-58231089 | Msa0460710:CDS | 35.0% | |
| TGACACTAACAAATGGAAGA+AGG | + | chr3_3:58231077-58231096 | Msa0460710:CDS | 35.0% | |
| ACATCTCCACTTTACTCAAA+TGG | + | chr3_3:58231162-58231181 | Msa0460710:CDS | 35.0% | |
| ATTGCACCATTTGAGTAAAG+TGG | - | chr3_3:58231171-58231190 | None:intergenic | 35.0% | |
| GGAAATAGGTGGATACTTAT+TGG | + | chr3_3:58231197-58231216 | Msa0460710:intron | 35.0% | |
| ! | TTAGCTCACAGTAGTTTTCT+TGG | - | chr3_3:58235055-58235074 | None:intergenic | 35.0% |
| AAACATTATGCATGACACTC+TGG | - | chr3_3:58231449-58231468 | None:intergenic | 35.0% | |
| GCAATAGGTGCAATCTTATA+AGG | - | chr3_3:58231519-58231538 | None:intergenic | 35.0% | |
| GCTTGTTCACTATAAGCAAT+AGG | - | chr3_3:58231534-58231553 | None:intergenic | 35.0% | |
| CAACAATTGAAGTTCATACC+TGG | - | chr3_3:58231645-58231664 | None:intergenic | 35.0% | |
| TCACAATGTGCATAAAGGAA+GGG | + | chr3_3:58231695-58231714 | Msa0460710:intron | 35.0% | |
| CTGCGTCTTTCTTTCTAATG+CGG | - | chr3_3:58230048-58230067 | None:intergenic | 40.0% | |
| !! | GCTAGGGTTGATGTTCTTAT+CGG | + | chr3_3:58230340-58230359 | Msa0460710:intron | 40.0% |
| ! | TTGACTTGACTTTAGGCTTG+TGG | - | chr3_3:58230550-58230569 | None:intergenic | 40.0% |
| AGAAGCTTAGGGAATGGTTA+AGG | - | chr3_3:58230801-58230820 | None:intergenic | 40.0% | |
| CAAACACTTGCTTCATGCAA+GGG | + | chr3_3:58230838-58230857 | Msa0460710:CDS | 40.0% | |
| AAGGGCTTGATTCTCTTGAA+TGG | + | chr3_3:58230856-58230875 | Msa0460710:CDS | 40.0% | |
| GGATTGAACACATAGTAGCA+GGG | - | chr3_3:58230898-58230917 | None:intergenic | 40.0% | |
| AGGATTGAACACATAGTAGC+AGG | - | chr3_3:58230899-58230918 | None:intergenic | 40.0% | |
| ! | TGGGAGATTTTGCCTCAATA+AGG | - | chr3_3:58231020-58231039 | None:intergenic | 40.0% |
| AACTCAAATTCTGGCAGAGA+AGG | - | chr3_3:58231129-58231148 | None:intergenic | 40.0% | |
| ACTCAAATGGTGCAATCCAT+TGG | + | chr3_3:58231175-58231194 | Msa0460710:intron | 40.0% | |
| CTCAAATGGTGCAATCCATT+GGG | + | chr3_3:58231176-58231195 | Msa0460710:intron | 40.0% | |
| AGTATCCACCTATTTCCCAA+TGG | - | chr3_3:58231194-58231213 | None:intergenic | 40.0% | |
| TTATAACCAACAACAGCTCC+TGG | - | chr3_3:58231579-58231598 | None:intergenic | 40.0% | |
| CTCACAATGTGCATAAAGGA+AGG | + | chr3_3:58231694-58231713 | Msa0460710:intron | 40.0% | |
| GGTGACTGATGGAGAAATAA+TGG | + | chr3_3:58231722-58231741 | Msa0460710:intron | 40.0% | |
| ATGGAGCTGAACTTACCAAT+AGG | + | chr3_3:58231741-58231760 | Msa0460710:intron | 40.0% | |
| GACATAGCTAGTAGCATAAC+TGG | - | chr3_3:58231838-58231857 | None:intergenic | 40.0% | |
| ! | TTGATGTGTGTTTTCATCGG+TGG | + | chr3_3:58233547-58233566 | Msa0460710:intron | 40.0% |
| AAAGGAATGTCCTAAGAACG+TGG | - | chr3_3:58233827-58233846 | None:intergenic | 40.0% | |
| !!! | GGACATTCCTTTATTTTGGG+TGG | + | chr3_3:58233835-58233854 | Msa0460710:intron | 40.0% |
| !! | GCTGATATAGAACTTGGTGT+GGG | - | chr3_3:58230006-58230025 | None:intergenic | 40.0% |
| CTGCGTCTTTCTTTCTAATG+CGG | - | chr3_3:58230048-58230067 | None:intergenic | 40.0% | |
| TTGCATACCGATACTTCTGA+TGG | + | chr3_3:58234077-58234096 | Msa0460710:intron | 40.0% | |
| GATCCCAACAACGATATATG+TGG | + | chr3_3:58234130-58234149 | Msa0460710:intron | 40.0% | |
| !! | ATTATTGGTGTTGAGGTGCT+AGG | + | chr3_3:58234182-58234201 | Msa0460710:intron | 40.0% |
| !! | TTATTGGTGTTGAGGTGCTA+GGG | + | chr3_3:58234183-58234202 | Msa0460710:intron | 40.0% |
| ! | TAGGGTTGATCTTCGTAACT+TGG | + | chr3_3:58234201-58234220 | Msa0460710:intron | 40.0% |
| ! | TTGACTTGACTTTAGGCTTG+TGG | - | chr3_3:58230550-58230569 | None:intergenic | 40.0% |
| CAAACACTTGCTTCATGCAA+GGG | + | chr3_3:58230838-58230857 | Msa0460710:CDS | 40.0% | |
| AAGGGCTTGATTCTCTTGAA+TGG | + | chr3_3:58230856-58230875 | Msa0460710:CDS | 40.0% | |
| GGATTGATCACATAGTAGCA+GGG | - | chr3_3:58234720-58234739 | None:intergenic | 40.0% | |
| AGGATTGATCACATAGTAGC+AGG | - | chr3_3:58234721-58234740 | None:intergenic | 40.0% | |
| AACTCAAATTCTGGCAGAGA+AGG | - | chr3_3:58231129-58231148 | None:intergenic | 40.0% | |
| ACTCAAATGGTGCAATCCAT+TGG | + | chr3_3:58231175-58231194 | Msa0460710:intron | 40.0% | |
| CTCAAATGGTGCAATCCATT+GGG | + | chr3_3:58231176-58231195 | Msa0460710:intron | 40.0% | |
| AGTATCCACCTATTTCCCAA+TGG | - | chr3_3:58231194-58231213 | None:intergenic | 40.0% | |
| CTCACAATGTGCATAAAGGA+AGG | + | chr3_3:58231694-58231713 | Msa0460710:intron | 40.0% | |
| GGTGACTGATGGAGAAATAA+TGG | + | chr3_3:58231722-58231741 | Msa0460710:intron | 40.0% | |
| ATGGAGCTGAACTTACCAAT+AGG | + | chr3_3:58231741-58231760 | Msa0460710:intron | 40.0% | |
| GACATAGCTAGTAGCATAAC+TGG | - | chr3_3:58231838-58231857 | None:intergenic | 40.0% | |
| AAAGGAATGTCCGAAGAACG+TGG | - | chr3_3:58229970-58229989 | None:intergenic | 45.0% | |
| GTGGACCCACCCAATATAAA+AGG | - | chr3_3:58229988-58230007 | None:intergenic | 45.0% | |
| ! | CGCTGATATAGAACTTGGTG+TGG | - | chr3_3:58230007-58230026 | None:intergenic | 45.0% |
| CGCAAGAAACAAGAGAGACT+CGG | + | chr3_3:58230075-58230094 | Msa0460710:CDS | 45.0% | |
| AAGAAACAAGAGAGACTCGG+TGG | + | chr3_3:58230078-58230097 | Msa0460710:CDS | 45.0% | |
| ! | ATTATCAGTGTCGAGGTGCT+AGG | + | chr3_3:58230323-58230342 | Msa0460710:intron | 45.0% |
| ! | TTATCAGTGTCGAGGTGCTA+GGG | + | chr3_3:58230324-58230343 | Msa0460710:intron | 45.0% |
| CAACTGAGAAGCTTAGGGAA+TGG | - | chr3_3:58230807-58230826 | None:intergenic | 45.0% | |
| GCAAACACTTGCTTCATGCA+AGG | + | chr3_3:58230837-58230856 | Msa0460710:CDS | 45.0% | |
| ATCCCTCTACCTTGTATCCA+AGG | + | chr3_3:58230940-58230959 | Msa0460710:CDS | 45.0% | |
| GTCCTTGGATACAAGGTAGA+GGG | - | chr3_3:58230945-58230964 | None:intergenic | 45.0% | |
| TGTCCTTGGATACAAGGTAG+AGG | - | chr3_3:58230946-58230965 | None:intergenic | 45.0% | |
| GGTGCAATCCATTGGGAAAT+AGG | + | chr3_3:58231183-58231202 | Msa0460710:intron | 45.0% | |
| GCAATCCATTGGGAAATAGG+TGG | + | chr3_3:58231186-58231205 | Msa0460710:intron | 45.0% | |
| CCTTCAGAAGTTCCCAAATG+TGG | - | chr3_3:58231371-58231390 | None:intergenic | 45.0% | |
| CCACATTTGGGAACTTCTGA+AGG | + | chr3_3:58231368-58231387 | Msa0460710:CDS | 45.0% | |
| TGTGCATAAAGGAAGGGACT+TGG | + | chr3_3:58231701-58231720 | Msa0460710:intron | 45.0% | |
| TTAAAACGAGCGCACTCTCA+AGG | + | chr3_3:58232805-58232824 | Msa0460710:intron | 45.0% | |
| ACGGAGTGAGTATAAGGGTA+TGG | - | chr3_3:58232902-58232921 | None:intergenic | 45.0% | |
| TTGGGACGGAGTGAGTATAA+GGG | - | chr3_3:58232907-58232926 | None:intergenic | 45.0% | |
| ! | TTTGGGACGGAGTGAGTATA+AGG | - | chr3_3:58232908-58232927 | None:intergenic | 45.0% |
| ! | CGCTGATATAGAACTTGGTG+TGG | - | chr3_3:58230007-58230026 | None:intergenic | 45.0% |
| ! | GCACGTTCCATCAGAAGTAT+CGG | - | chr3_3:58234087-58234106 | None:intergenic | 45.0% |
| CAACTGAGAAGCTTAGGGAA+TGG | - | chr3_3:58230807-58230826 | None:intergenic | 45.0% | |
| GCAAACACTTGCTTCATGCA+AGG | + | chr3_3:58230837-58230856 | Msa0460710:CDS | 45.0% | |
| ATCCCTCTACCTTGTATCCA+AGG | + | chr3_3:58230940-58230959 | Msa0460710:CDS | 45.0% | |
| GTCCTTGGATACAAGGTAGA+GGG | - | chr3_3:58230945-58230964 | None:intergenic | 45.0% | |
| TGTCCTTGGATACAAGGTAG+AGG | - | chr3_3:58230946-58230965 | None:intergenic | 45.0% | |
| GGTGCAATCCATTGGGAAAT+AGG | + | chr3_3:58231183-58231202 | Msa0460710:intron | 45.0% | |
| GCAATCCATTGGGAAATAGG+TGG | + | chr3_3:58231186-58231205 | Msa0460710:intron | 45.0% | |
| CCTTCAGAAGTTCCCAAATG+TGG | - | chr3_3:58231371-58231390 | None:intergenic | 45.0% | |
| CCACATTTGGGAACTTCTGA+AGG | + | chr3_3:58231368-58231387 | Msa0460710:CDS | 45.0% | |
| ATATTTGCAGCTTCCAGCAC+AGG | + | chr3_3:58235363-58235382 | Msa0460710:intron | 45.0% | |
| AGCTTCCAGCACAGGAAATT+TGG | + | chr3_3:58235371-58235390 | Msa0460710:intron | 45.0% | |
| GCTTCCAGCACAGGAAATTT+GGG | + | chr3_3:58235372-58235391 | Msa0460710:intron | 45.0% | |
| TGATCCCAAATTTCCTGTGC+TGG | - | chr3_3:58235379-58235398 | None:intergenic | 45.0% | |
| TGTGCATAAAGGAAGGGACT+TGG | + | chr3_3:58231701-58231720 | Msa0460710:intron | 45.0% | |
| !!! | ATCATTTTTTAAATTATTAT+TGG | + | chr3_3:58234167-58234186 | Msa0460710:intron | 5.0% |
| !! | AGAAGTGTCCGTATGCAACC+TGG | - | chr3_3:58230218-58230237 | None:intergenic | 50.0% |
| CGTCGATGTTTGTGCGAATC+AGG | + | chr3_3:58231306-58231325 | Msa0460710:CDS | 50.0% | |
| GGGGCTCACAATGTGCATAA+AGG | + | chr3_3:58231690-58231709 | Msa0460710:intron | 50.0% | |
| AGGTCAAGACGTTACCTCGA+CGG | + | chr3_3:58232566-58232585 | Msa0460710:intron | 50.0% | |
| GTGGGTCCCACCCAAAATAA+AGG | - | chr3_3:58233845-58233864 | None:intergenic | 50.0% | |
| CGCAAGAAGCAAGAGAGACT+CGG | + | chr3_3:58233932-58233951 | Msa0460710:intron | 50.0% | |
| AAGAAGCAAGAGAGACTCGG+TGG | + | chr3_3:58233935-58233954 | Msa0460710:intron | 50.0% | |
| GGGGCTCACAATGTGCATAA+AGG | + | chr3_3:58231690-58231709 | Msa0460710:intron | 50.0% | |
| CAGCTTCCAGGAGCTGTTGT+TGG | + | chr3_3:58231570-58231589 | Msa0460710:CDS | 55.0% | |
| !! | GGAAGGGACTTGGTGACTGA+TGG | + | chr3_3:58231711-58231730 | Msa0460710:intron | 55.0% |
| ACATCGTGGCATAACCGTCG+AGG | - | chr3_3:58232583-58232602 | None:intergenic | 55.0% | |
| !! | GGAAGGGACTTGGTGACTGA+TGG | + | chr3_3:58231711-58231730 | Msa0460710:intron | 55.0% |
| !! | GAGAGACTCGGTGGTGACGT+CGG | + | chr3_3:58230087-58230106 | Msa0460710:CDS | 60.0% |
| !! | GAGAGACTCGGTGGTGACGT+CGG | + | chr3_3:58230087-58230106 | Msa0460710:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 58229941 | 58235766 | 58229941 | ID=Msa0460710;Name=Msa0460710 |
| chr3_3 | mRNA | 58229941 | 58235766 | 58229941 | ID=Msa0460710-mRNA-1;Parent=Msa0460710;Name=Msa0460710-mRNA-1;_AED=0.23;_eAED=0.23;_QI=0|0|0.14|1|0|0|7|203|468 |
| chr3_3 | exon | 58229941 | 58230138 | 58229941 | ID=Msa0460710-mRNA-1:exon:12084;Parent=Msa0460710-mRNA-1 |
| chr3_3 | exon | 58230724 | 58230966 | 58230724 | ID=Msa0460710-mRNA-1:exon:12085;Parent=Msa0460710-mRNA-1 |
| chr3_3 | exon | 58231012 | 58231183 | 58231012 | ID=Msa0460710-mRNA-1:exon:12086;Parent=Msa0460710-mRNA-1 |
| chr3_3 | exon | 58231205 | 58231443 | 58231205 | ID=Msa0460710-mRNA-1:exon:12087;Parent=Msa0460710-mRNA-1 |
| chr3_3 | exon | 58231450 | 58231645 | 58231450 | ID=Msa0460710-mRNA-1:exon:12088;Parent=Msa0460710-mRNA-1 |
| chr3_3 | exon | 58234586 | 58234801 | 58234586 | ID=Msa0460710-mRNA-1:exon:12089;Parent=Msa0460710-mRNA-1 |
| chr3_3 | exon | 58235421 | 58235766 | 58235421 | ID=Msa0460710-mRNA-1:exon:12090;Parent=Msa0460710-mRNA-1 |
| chr3_3 | CDS | 58229941 | 58230138 | 58229941 | ID=Msa0460710-mRNA-1:cds;Parent=Msa0460710-mRNA-1 |
| chr3_3 | CDS | 58230724 | 58230966 | 58230724 | ID=Msa0460710-mRNA-1:cds;Parent=Msa0460710-mRNA-1 |
| chr3_3 | CDS | 58231012 | 58231183 | 58231012 | ID=Msa0460710-mRNA-1:cds;Parent=Msa0460710-mRNA-1 |
| chr3_3 | CDS | 58231205 | 58231443 | 58231205 | ID=Msa0460710-mRNA-1:cds;Parent=Msa0460710-mRNA-1 |
| chr3_3 | CDS | 58231450 | 58231645 | 58231450 | ID=Msa0460710-mRNA-1:cds;Parent=Msa0460710-mRNA-1 |
| chr3_3 | CDS | 58234586 | 58234801 | 58234586 | ID=Msa0460710-mRNA-1:cds;Parent=Msa0460710-mRNA-1 |
| chr3_3 | CDS | 58235421 | 58235563 | 58235421 | ID=Msa0460710-mRNA-1:cds;Parent=Msa0460710-mRNA-1 |
| chr3_3 | three_prime_UTR | 58235564 | 58235766 | 58235564 | ID=Msa0460710-mRNA-1:three_prime_utr;Parent=Msa0460710-mRNA-1 |
| Gene Sequence |
| Protein sequence |
