AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1125880

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125880 MtrunA17_Chr7g0266701 96.498 257 7 2 1 255 1 257 0.0 516
Msa1125880 MtrunA17_Chr2g0321631 48.846 260 112 7 1 250 1 249 3.09e-80 241
Msa1125880 MtrunA17_Chr4g0026141 61.017 177 66 2 2 178 3 176 7.80e-75 228
Msa1125880 MtrunA17_Chr4g0038751 44.186 172 76 6 6 174 17 171 1.60e-42 146
Msa1125880 MtrunA17_Chr5g0417791 39.645 169 94 4 4 172 3 163 6.70e-38 133
Msa1125880 MtrunA17_Chr4g0076731 42.683 164 81 5 2 165 52 202 1.20e-37 137
Msa1125880 MtrunA17_Chr2g0326361 42.262 168 87 5 4 169 14 173 1.93e-36 131
Msa1125880 MtrunA17_Chr4g0042561 39.766 171 95 4 4 174 9 171 3.00e-36 129
Msa1125880 MtrunA17_Chr6g0453131 37.791 172 97 5 1 168 12 177 1.01e-35 130
Msa1125880 MtrunA17_Chr8g0384721 33.778 225 127 9 4 221 7 216 4.24e-35 127
Msa1125880 MtrunA17_Chr6g0481091 42.593 162 83 6 4 165 6 157 6.53e-35 125
Msa1125880 MtrunA17_Chr8g0361731 31.048 248 152 10 4 239 14 254 1.90e-34 127
Msa1125880 MtrunA17_Chr3g0109821 36.453 203 109 8 4 204 6 190 5.97e-34 129
Msa1125880 MtrunA17_Chr8g0359921 39.264 163 89 6 3 165 13 165 9.19e-34 124
Msa1125880 MtrunA17_Chr5g0400461 42.690 171 78 7 3 166 5 162 1.29e-33 124
Msa1125880 MtrunA17_Chr5g0433781 40.964 166 86 6 4 168 6 160 1.59e-33 127
Msa1125880 MtrunA17_Chr2g0318081 37.569 181 93 8 4 182 16 178 1.93e-33 124
Msa1125880 MtrunA17_Chr5g0417001 32.864 213 129 7 6 210 16 222 4.11e-33 124
Msa1125880 MtrunA17_Chr7g0263931 39.286 168 94 4 4 170 11 171 7.72e-33 122
Msa1125880 MtrunA17_Chr4g0018391 33.929 224 119 8 3 224 6 202 8.58e-33 122
Msa1125880 MtrunA17_Chr2g0309891 40.244 164 87 6 3 165 5 158 1.21e-32 122
Msa1125880 MtrunA17_Chr3g0130731 35.227 176 102 5 4 178 7 171 2.25e-32 120
Msa1125880 MtrunA17_Chr6g0453451 39.053 169 93 5 4 172 20 178 2.29e-32 120
Msa1125880 MtrunA17_Chr7g0252971 38.728 173 91 5 3 167 7 172 5.08e-32 120
Msa1125880 MtrunA17_Chr1g0147421 37.427 171 94 5 2 171 25 183 9.99e-32 119
Msa1125880 MtrunA17_Chr5g0398971 27.609 297 160 11 3 253 6 293 3.67e-31 118
Msa1125880 MtrunA17_Chr3g0139331 39.394 165 86 6 2 165 9 160 7.14e-31 117
Msa1125880 MtrunA17_Chr4g0054791 40.361 166 86 6 4 166 6 161 9.14e-31 116
Msa1125880 MtrunA17_Chr4g0047841 35.912 181 91 5 4 165 15 189 1.58e-30 116
Msa1125880 MtrunA17_Chr1g0201021 42.236 161 81 6 6 165 21 170 4.62e-30 117
Msa1125880 MtrunA17_Chr1g0200561 38.509 161 88 4 4 164 19 168 5.56e-30 115
Msa1125880 MtrunA17_Chr2g0318101 33.195 241 111 8 3 236 14 211 6.21e-30 114
Msa1125880 MtrunA17_Chr3g0124761 36.970 165 94 6 4 168 7 161 1.02e-29 112
Msa1125880 MtrunA17_Chr6g0484441 39.024 164 86 6 2 165 3 152 1.19e-29 113
Msa1125880 MtrunA17_Chr3g0128151 38.095 168 88 6 1 165 19 173 1.28e-29 116
Msa1125880 MtrunA17_Chr4g0060931 37.423 163 92 5 3 165 16 168 2.27e-29 113
Msa1125880 MtrunA17_Chr3g0091921 38.889 162 89 4 4 165 16 167 4.91e-29 111
Msa1125880 MtrunA17_Chr1g0183741 35.976 164 89 6 4 166 10 158 6.52e-29 110
Msa1125880 MtrunA17_Chr3g0128111 37.654 162 85 6 7 165 45 193 7.31e-29 109
Msa1125880 MtrunA17_Chr8g0346001 35.263 190 105 6 4 184 15 195 7.40e-29 113
Msa1125880 MtrunA17_Chr4g0056541 35.802 162 93 4 3 164 6 156 9.92e-29 111
Msa1125880 MtrunA17_Chr5g0405211 36.310 168 92 5 1 164 1 157 1.46e-28 111
Msa1125880 MtrunA17_Chr3g0130101 33.014 209 122 6 4 212 7 197 1.56e-28 111
Msa1125880 MtrunA17_Chr5g0428991 38.182 165 90 6 1 164 22 175 1.92e-28 113
Msa1125880 MtrunA17_Chr2g0316971 39.024 164 90 6 3 165 22 176 2.24e-28 111
Msa1125880 MtrunA17_Chr8g0372121 34.731 167 98 4 4 170 6 161 2.74e-28 109
Msa1125880 MtrunA17_Chr1g0197351 41.104 163 90 6 4 165 42 199 1.50e-27 110
Msa1125880 MtrunA17_Chr8g0385991 37.037 162 87 4 4 161 14 164 1.82e-27 105
Msa1125880 MtrunA17_Chr3g0144271 38.788 165 91 6 4 167 23 178 2.39e-27 108
Msa1125880 MtrunA17_Chr8g0345691 37.037 162 87 5 1 161 9 156 2.56e-27 108
Msa1125880 MtrunA17_Chr2g0311661 27.869 244 155 8 2 234 18 251 4.03e-27 106
Msa1125880 MtrunA17_Chr2g0311651 34.225 187 104 7 2 175 19 199 4.48e-27 106
Msa1125880 MtrunA17_Chr2g0309331 36.310 168 97 4 4 171 10 167 6.03e-27 106
Msa1125880 MtrunA17_Chr1g0197361 36.250 160 92 6 6 165 10 159 8.96e-27 108
Msa1125880 MtrunA17_Chr7g0261411 33.750 160 90 5 4 162 10 154 4.62e-26 103
Msa1125880 MtrunA17_Chr7g0217711 42.636 129 67 4 7 135 22 143 8.55e-26 99.8
Msa1125880 MtrunA17_Chr7g0214071 36.310 168 82 7 4 166 15 162 9.43e-26 101
Msa1125880 MtrunA17_Chr3g0092671 34.375 160 95 5 6 165 7 156 1.52e-25 104
Msa1125880 MtrunA17_Chr7g0217721 36.628 172 90 6 7 167 22 185 1.61e-25 102
Msa1125880 MtrunA17_Chr8g0364791 33.962 159 95 5 6 164 8 156 1.78e-25 103
Msa1125880 MtrunA17_Chr6g0461661 34.146 164 98 5 3 165 17 171 2.17e-25 102
Msa1125880 MtrunA17_Chr8g0345711 38.686 137 79 4 2 137 10 142 2.77e-25 98.2
Msa1125880 MtrunA17_Chr8g0384201 33.962 159 95 5 6 164 8 156 3.53e-25 103
Msa1125880 MtrunA17_Chr5g0442771 35.542 166 93 6 6 164 20 178 4.61e-25 100
Msa1125880 MtrunA17_Chr7g0253011 34.940 166 96 5 3 165 16 172 1.18e-24 100
Msa1125880 MtrunA17_Chr4g0017921 32.850 207 108 7 4 210 8 183 1.24e-24 100
Msa1125880 MtrunA17_Chr2g0312321 31.214 173 103 6 4 176 11 167 1.59e-23 96.7
Msa1125880 MtrunA17_Chr3g0131911 33.728 169 96 6 4 166 14 172 3.18e-23 94.7
Msa1125880 MtrunA17_Chr4g0050701 33.929 168 89 7 4 166 11 161 3.89e-23 93.2
Msa1125880 MtrunA17_Chr8g0345671 36.025 161 86 6 3 161 10 155 7.38e-23 96.3
Msa1125880 MtrunA17_Chr2g0321741 30.472 233 122 8 26 248 14 216 6.25e-21 90.5
Msa1125880 MtrunA17_Chr3g0113001 40.870 115 64 3 58 172 14 124 1.46e-20 88.6
Msa1125880 MtrunA17_Chr8g0345721 31.098 164 83 5 7 142 38 199 4.64e-20 85.5
Msa1125880 MtrunA17_Chr8g0345701 35.333 150 76 6 3 137 6 149 5.29e-19 81.6
Msa1125880 MtrunA17_Chr8g0345731 32.903 155 97 6 2 152 22 173 5.59e-18 79.0
Msa1125880 MtrunA17_Chr3g0113031 40.000 100 58 2 79 178 9 106 1.58e-17 79.7
Msa1125880 MtrunA17_Chr8g0345741 35.156 128 78 4 15 141 2 125 2.45e-17 76.6
Msa1125880 MtrunA17_Chr7g0243371 42.308 78 43 2 60 135 13 90 1.01e-15 71.2
Msa1125880 MtrunA17_Chr3g0130321 28.655 171 100 7 4 166 7 163 2.04e-13 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1125880 AT5G22380.1 45.968 248 118 3 2 249 3 234 1.36e-75 229
Msa1125880 AT3G44350.2 45.850 253 107 6 7 249 8 240 5.73e-72 220
Msa1125880 AT3G44350.1 52.147 163 73 3 2 164 3 160 1.91e-58 183
Msa1125880 AT2G17040.1 43.931 173 75 6 6 174 8 162 6.04e-42 144
Msa1125880 AT4G17980.1 43.114 167 81 7 4 166 6 162 3.27e-39 137
Msa1125880 AT4G17980.2 43.114 167 81 7 4 166 6 162 5.62e-39 137
Msa1125880 AT2G02450.1 44.025 159 76 5 6 164 53 198 1.21e-38 139
Msa1125880 AT2G02450.2 44.025 159 76 5 6 164 53 198 2.01e-38 139
Msa1125880 AT5G08790.1 36.702 188 105 5 3 187 6 182 1.31e-37 134
Msa1125880 AT4G27410.2 38.037 163 89 5 3 165 13 163 4.30e-36 130
Msa1125880 AT1G69490.1 41.615 161 86 4 4 164 9 161 1.21e-35 128
Msa1125880 AT5G63790.1 34.862 218 119 6 3 216 49 247 1.45e-35 129
Msa1125880 AT5G63790.2 34.862 218 119 6 3 216 59 257 1.89e-35 129
Msa1125880 AT5G46590.1 43.293 164 83 6 4 166 6 160 8.72e-35 126
Msa1125880 AT4G27410.3 36.364 176 91 6 3 165 13 180 2.75e-34 125
Msa1125880 AT1G65910.1 44.172 163 79 7 4 165 6 157 4.21e-34 129
Msa1125880 AT3G15500.1 38.272 162 88 5 3 164 13 162 4.22e-34 125
Msa1125880 AT1G26870.1 33.716 261 135 10 2 239 14 259 4.45e-34 127
Msa1125880 AT3G17730.1 41.718 163 85 6 3 165 5 157 4.46e-34 123
Msa1125880 AT1G32510.1 41.176 170 84 6 4 166 6 166 5.05e-34 124
Msa1125880 AT5G17260.1 36.759 253 120 14 3 246 5 226 1.01e-33 127
Msa1125880 AT1G01720.1 35.393 178 103 5 4 181 7 172 9.15e-33 121
Msa1125880 AT1G52890.1 37.267 161 89 5 4 164 14 162 1.01e-32 122
Msa1125880 AT5G46590.2 41.722 151 82 4 4 153 6 151 2.84e-32 119
Msa1125880 AT3G03200.1 44.242 165 75 7 4 164 6 157 1.34e-31 121
Msa1125880 AT1G61110.1 35.429 175 98 5 3 169 15 182 1.60e-31 119
Msa1125880 AT1G33060.2 40.361 166 85 6 1 164 21 174 1.74e-31 122
Msa1125880 AT1G33060.1 40.361 166 85 6 1 164 21 174 1.79e-31 122
Msa1125880 AT5G39820.1 34.361 227 121 9 2 208 18 236 2.00e-31 119
Msa1125880 AT1G34180.3 41.718 163 79 6 6 165 18 167 2.23e-31 120
Msa1125880 AT2G24430.2 38.462 169 91 6 4 171 16 172 2.64e-31 118
Msa1125880 AT2G24430.1 38.462 169 91 6 4 171 16 172 2.64e-31 118
Msa1125880 AT3G04060.1 39.157 166 86 5 3 165 19 172 2.70e-31 118
Msa1125880 AT3G49530.2 31.783 258 156 7 1 253 10 252 3.76e-31 119
Msa1125880 AT4G35580.1 39.024 164 90 5 1 164 6 159 4.23e-31 120
Msa1125880 AT4G35580.3 39.024 164 90 5 1 164 6 159 4.39e-31 120
Msa1125880 AT4G35580.2 39.024 164 90 5 1 164 6 159 4.51e-31 120
Msa1125880 AT1G34180.1 41.718 163 79 6 6 165 18 167 5.48e-31 120
Msa1125880 AT5G62380.2 36.585 164 93 5 1 164 4 156 6.46e-31 117
Msa1125880 AT5G62380.1 36.585 164 93 5 1 164 4 156 6.46e-31 117
Msa1125880 AT3G49530.1 31.783 258 156 7 1 253 10 252 6.89e-31 119
Msa1125880 AT1G77450.1 36.364 165 95 5 4 168 10 164 1.27e-30 114
Msa1125880 AT5G61430.1 38.650 163 90 6 3 165 15 167 1.42e-30 116
Msa1125880 AT5G24590.2 39.634 164 90 5 1 164 10 164 1.46e-30 118
Msa1125880 AT1G71930.2 31.330 233 136 7 1 224 1 218 5.13e-30 114
Msa1125880 AT1G71930.1 31.330 233 136 7 1 224 1 218 5.13e-30 114
Msa1125880 AT2G43000.1 36.000 175 99 5 6 179 20 182 5.53e-30 113
Msa1125880 AT4G36160.1 31.364 220 128 5 3 210 9 217 6.58e-30 115
Msa1125880 AT4G36160.3 31.364 220 128 5 3 210 9 217 6.58e-30 115
Msa1125880 AT1G34180.4 39.766 171 83 6 6 165 18 179 6.80e-30 116
Msa1125880 AT3G18400.1 37.500 168 92 5 2 169 3 157 6.82e-30 114
Msa1125880 AT4G36160.2 31.364 220 128 5 3 210 13 221 7.58e-30 115
Msa1125880 AT3G15510.1 37.791 172 94 5 8 172 21 186 1.14e-29 114
Msa1125880 AT3G10490.1 37.349 166 93 6 3 167 26 181 1.37e-29 111
Msa1125880 AT2G27300.1 41.985 131 70 3 4 134 14 138 1.59e-29 114
Msa1125880 AT1G34180.2 39.766 171 83 6 6 165 18 179 1.77e-29 116
Msa1125880 AT5G22290.1 41.727 139 73 4 6 142 23 155 2.46e-29 113
Msa1125880 AT2G18060.3 37.267 161 90 4 4 164 9 158 3.13e-29 113
Msa1125880 AT2G18060.1 37.267 161 90 4 4 164 9 158 3.13e-29 113
Msa1125880 AT3G10480.1 39.024 164 89 7 3 165 26 179 3.28e-29 114
Msa1125880 AT5G07680.1 36.196 163 94 4 3 165 16 168 3.31e-29 112
Msa1125880 AT5G07680.2 36.196 163 94 4 3 165 2 154 3.38e-29 112
Msa1125880 AT3G10480.2 39.394 165 86 7 3 165 26 178 6.06e-29 114
Msa1125880 AT3G15170.1 39.264 163 89 6 4 165 20 173 7.25e-29 111
Msa1125880 AT1G34190.1 38.509 161 87 6 6 165 18 167 7.66e-29 114
Msa1125880 AT5G66300.1 27.622 286 162 8 3 254 11 285 1.33e-28 110
Msa1125880 AT3G44290.2 34.503 171 94 4 6 176 16 168 1.98e-28 108
Msa1125880 AT3G12910.1 35.227 176 98 5 6 171 23 192 2.62e-28 109
Msa1125880 AT1G62700.1 37.888 161 89 7 4 164 7 156 2.96e-28 111
Msa1125880 AT1G62700.2 37.888 161 89 7 4 164 7 156 2.96e-28 111
Msa1125880 AT3G10490.2 37.805 164 91 6 3 165 26 179 4.90e-28 111
Msa1125880 AT5G18270.2 36.196 163 95 3 3 165 20 173 6.24e-28 109
Msa1125880 AT3G44290.1 34.503 171 94 4 6 176 16 168 9.24e-28 108
Msa1125880 AT5G39610.1 34.409 186 108 6 3 188 19 190 1.18e-27 107
Msa1125880 AT1G76420.1 39.286 168 79 7 4 165 22 172 1.35e-27 108
Msa1125880 AT5G53950.1 38.415 164 89 6 4 165 17 170 1.38e-27 109
Msa1125880 AT5G18270.1 36.196 163 95 3 3 165 20 173 1.38e-27 108
Msa1125880 AT3G04070.2 38.150 173 89 7 4 167 10 173 1.46e-27 108
Msa1125880 AT1G54330.1 36.810 163 90 4 3 165 5 154 1.48e-27 107
Msa1125880 AT1G12260.2 35.185 162 94 6 3 164 6 156 1.86e-27 108
Msa1125880 AT1G32770.1 36.842 171 89 5 4 164 16 177 2.59e-27 108
Msa1125880 AT1G12260.1 35.185 162 94 6 3 164 6 156 3.96e-27 108
Msa1125880 AT1G79580.3 36.905 168 95 5 4 171 17 173 8.87e-27 107
Msa1125880 AT1G79580.5 36.905 168 95 5 4 171 17 173 8.87e-27 107
Msa1125880 AT1G79580.4 36.905 168 95 5 4 171 17 173 8.87e-27 107
Msa1125880 AT1G79580.2 36.905 168 95 5 4 171 17 173 8.87e-27 107
Msa1125880 AT1G79580.1 36.905 168 95 5 4 171 17 173 8.87e-27 107
Msa1125880 AT3G61910.1 31.551 187 116 4 4 182 11 193 2.19e-26 105
Msa1125880 AT5G64060.1 34.545 165 94 6 3 165 5 157 3.59e-26 105
Msa1125880 AT3G04070.1 36.702 188 87 8 4 167 10 189 5.24e-26 104
Msa1125880 AT4G01550.1 38.272 162 85 5 7 166 7 155 9.30e-26 105
Msa1125880 AT2G46770.1 34.078 179 102 5 4 172 16 188 1.70e-25 103
Msa1125880 AT3G10500.1 35.152 165 93 7 3 165 8 160 5.34e-25 103
Msa1125880 AT3G12977.1 33.742 163 97 4 3 165 17 168 6.42e-25 100
Msa1125880 AT3G10480.3 32.143 196 91 7 3 165 26 212 1.28e-24 102
Msa1125880 AT1G33280.1 34.731 167 97 4 4 170 8 162 1.75e-24 99.8
Msa1125880 AT5G04410.1 36.196 163 94 6 3 165 8 160 1.80e-24 102
Msa1125880 AT3G29035.1 35.000 160 94 5 3 162 23 172 2.02e-24 99.8
Msa1125880 AT4G28530.1 30.899 178 95 5 4 166 10 174 3.13e-24 99.8
Msa1125880 AT5G09330.5 33.951 162 95 6 4 164 6 156 4.03e-24 100
Msa1125880 AT5G09330.2 33.951 162 95 6 4 164 6 156 4.03e-24 100
Msa1125880 AT5G09330.4 33.951 162 95 6 4 164 6 156 4.03e-24 100
Msa1125880 AT5G09330.3 33.951 162 95 6 4 164 6 156 4.03e-24 100
Msa1125880 AT5G09330.1 33.951 162 95 6 4 164 6 156 4.03e-24 100
Msa1125880 AT4G10350.1 34.320 169 102 4 4 172 9 168 4.23e-24 99.4
Msa1125880 AT1G32870.2 37.654 162 91 6 4 165 10 161 5.45e-24 100
Msa1125880 AT1G32870.1 37.654 162 91 6 4 165 10 161 6.01e-24 100
Msa1125880 AT5G13180.1 35.366 164 90 6 4 166 14 162 6.62e-24 97.1
Msa1125880 AT2G33480.2 33.742 163 91 5 4 166 15 160 7.10e-24 97.4
Msa1125880 AT1G32870.3 37.654 162 91 6 4 165 46 197 7.36e-24 100
Msa1125880 AT1G56010.2 32.335 167 95 5 4 165 19 172 7.54e-24 98.2
Msa1125880 AT2G33480.1 33.129 163 94 5 4 166 15 162 2.65e-23 95.9
Msa1125880 AT1G52880.1 37.195 164 91 5 8 165 21 178 1.07e-22 95.1
Msa1125880 AT5G04395.1 37.086 151 80 5 3 141 27 174 6.78e-22 90.1
Msa1125880 AT4G01520.1 31.325 166 98 5 5 167 5 157 1.60e-21 91.7
Msa1125880 AT3G55210.1 31.176 170 93 5 4 162 11 167 7.35e-21 89.4
Msa1125880 AT3G56530.1 32.704 159 96 3 4 162 52 199 7.36e-21 90.1
Msa1125880 AT4G01540.3 32.317 164 95 5 7 167 7 157 8.92e-21 90.9
Msa1125880 AT4G01540.4 32.317 164 95 5 7 167 7 157 1.01e-20 90.5
Msa1125880 AT4G01540.2 32.317 164 95 5 7 167 7 157 1.14e-20 90.9
Msa1125880 AT4G01540.1 32.317 164 95 5 7 167 7 157 1.20e-20 90.9
Msa1125880 AT5G61430.2 40.196 102 57 2 64 165 7 104 2.92e-20 87.8
Msa1125880 AT3G04420.2 31.098 164 99 5 1 164 1 150 1.38e-18 83.6
Msa1125880 AT3G04420.1 35.294 136 84 4 1 136 1 132 1.76e-18 84.0
Msa1125880 AT5G64530.2 33.824 136 65 7 3 134 2 116 1.10e-17 78.2
Msa1125880 AT5G64530.1 33.824 136 65 7 3 134 2 116 1.29e-17 78.6
Msa1125880 AT1G56010.1 37.255 102 61 2 64 165 7 105 1.37e-17 80.1
Msa1125880 AT1G01010.1 30.366 191 109 7 7 187 6 182 2.99e-17 80.9
Msa1125880 AT3G12977.2 37.255 102 59 2 64 165 19 115 5.78e-17 77.8
Msa1125880 AT1G02230.1 33.750 160 88 7 5 161 4 148 2.13e-16 78.2
Msa1125880 AT1G02250.1 32.919 161 88 8 5 161 4 148 3.01e-16 77.8
Msa1125880 AT4G10350.2 35.185 108 64 2 65 172 20 121 1.05e-15 75.5
Msa1125880 AT3G10490.4 41.463 82 43 2 84 165 3 79 3.55e-15 74.3
Msa1125880 AT3G10490.3 41.463 82 43 2 84 165 3 79 3.55e-15 74.3
Msa1125880 AT2G18060.2 45.455 77 34 3 88 164 2 70 8.78e-15 72.8
Msa1125880 AT2G43000.2 37.374 99 57 2 81 179 11 104 2.34e-14 70.1
Msa1125880 AT2G33480.3 35.294 102 56 3 67 166 12 105 3.16e-14 70.1
Msa1125880 AT1G02220.1 27.389 157 98 5 5 161 4 144 4.29e-13 68.6
Msa1125880 AT3G04430.1 35.514 107 64 3 10 116 6 107 2.10e-12 64.7
Msa1125880 AT5G14000.2 31.343 134 79 5 4 134 15 138 6.82e-12 62.4
Msa1125880 AT5G22290.2 53.571 56 23 2 89 142 2 56 9.06e-12 63.5
Msa1125880 AT5G14000.1 31.343 134 79 5 4 134 15 138 1.13e-11 62.8

Find 65 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTTCGCAAGTTGAATCTTTC+TGG 0.167753 7_3:-77352106 None:intergenic
GAGCAAGTGGATTGGTTCTT+AGG 0.188696 7_3:+77352269 Msa1125880:CDS
CTCACTTCACTTTCTTGCCT+TGG 0.279048 7_3:-77351288 None:intergenic
AAGAGGATGTTTCATCTAAC+TGG 0.287039 7_3:-77351488 None:intergenic
TCTTCAGATAATCGCATCAT+TGG 0.352302 7_3:+77351381 Msa1125880:CDS
TTGGAAAATGAACGAGTATA+AGG 0.364384 7_3:+77351461 Msa1125880:CDS
TCTGAAGAATAAACATGATT+AGG 0.369085 7_3:-77351366 None:intergenic
TTATGATGCTTTGTTGGATT+GGG 0.384703 7_3:+77352247 Msa1125880:CDS
ATTATGATGCTTTGTTGGAT+TGG 0.386486 7_3:+77352246 Msa1125880:CDS
TGCTGATTATGATGCTTTGT+TGG 0.395773 7_3:+77352241 Msa1125880:CDS
TATCTTCACAATATGCTTGA+AGG 0.404066 7_3:+77350734 Msa1125880:CDS
CATTGGAGTGAAAAGAACTA+TGG 0.407082 7_3:+77351398 Msa1125880:CDS
ATGATGACAAATATTTGTTT+CGG 0.416964 7_3:+77352394 Msa1125880:three_prime_UTR
CCAGTGTTGGTGAGACGCTT+TGG 0.428965 7_3:-77351321 None:intergenic
GTAGTCACATAATATATGTT+TGG 0.435700 7_3:-77352490 None:intergenic
CATAATCAGCAATATCCATT+TGG 0.446503 7_3:-77352229 None:intergenic
GAAATAAGCTCTTCTTCTGT+AGG 0.449332 7_3:-77350707 None:intergenic
TATATTAACGACTGGTATAA+CGG 0.454373 7_3:-77350780 None:intergenic
AGCAAGTGGATTGGTTCTTA+GGG 0.460177 7_3:+77352270 Msa1125880:CDS
TCTATAGAGGAAGAGCTCTC+TGG 0.482763 7_3:-77352170 None:intergenic
TTTATACGTGGGAGTTGTGA+TGG 0.487627 7_3:-77350815 None:intergenic
TAGGGTCGGAGCCATAATAT+AGG 0.495123 7_3:+77352288 Msa1125880:exon
CAAATGGAAAGAAAACTGAT+TGG 0.496748 7_3:+77351442 Msa1125880:CDS
CCAAAGCGTCTCACCAACAC+TGG 0.504150 7_3:+77351321 Msa1125880:CDS
ACATGGGTTGTAACCCTCCT+TGG 0.505741 7_3:-77352065 None:intergenic
AGCTTCTCCAACCTCTTGTG+AGG 0.507371 7_3:-77352204 None:intergenic
GTCTCACCAACACTGGGTAC+TGG 0.511931 7_3:+77351328 Msa1125880:CDS
TTCAAACAAAGTAGCTCCTA+AGG 0.519978 7_3:+77351509 Msa1125880:CDS
GGCTTTCCAGTACCCAGTGT+TGG 0.521942 7_3:-77351334 None:intergenic
AGGAGCTACTTTGTTTGAAG+AGG 0.523871 7_3:-77351505 None:intergenic
TACGTGCAAGATTAAATTTG+TGG 0.528665 7_3:+77352323 Msa1125880:three_prime_UTR
GGTTGGAGAAGCTAGCCAAA+TGG 0.532147 7_3:+77352214 Msa1125880:CDS
AAATAAGCTCTTCTTCTGTA+GGG 0.541701 7_3:-77350706 None:intergenic
TATAGTGGAAGAGCTCCAAA+TGG 0.542069 7_3:+77351426 Msa1125880:CDS
GCTTCTCCAACCTCTTGTGA+GGG 0.545254 7_3:-77352203 None:intergenic
TGGATTGGGAGCAAGTGGAT+TGG 0.559258 7_3:+77352261 Msa1125880:CDS
GGGTTGAACATGGTCTATAG+AGG 0.566952 7_3:-77352183 None:intergenic
TAATCGTATATATTAACGAC+TGG 0.569424 7_3:-77350788 None:intergenic
AGTGGATTGGTTCTTAGGGT+CGG 0.569927 7_3:+77352274 Msa1125880:CDS
TGCAAGATTAAATTTGTGGT+GGG 0.570439 7_3:+77352327 Msa1125880:three_prime_UTR
GTTCAACCCTCACAAGAGGT+TGG 0.570806 7_3:+77352197 Msa1125880:CDS
GTGCAAGATTAAATTTGTGG+TGG 0.572834 7_3:+77352326 Msa1125880:three_prime_UTR
ACTGGGTACTGGAAAGCCAC+TGG 0.577981 7_3:+77351339 Msa1125880:CDS
CCTCTTGTGAGGGTTGAACA+TGG 0.579803 7_3:-77352193 None:intergenic
ACCCATGTTCAAAATGCTCA+AGG 0.588355 7_3:+77352080 Msa1125880:CDS
TGGGTTGTAACCCTCCTTGG+TGG 0.590628 7_3:-77352062 None:intergenic
GTTGTAACCCTCCTTGGTGG+TGG 0.601972 7_3:-77352059 None:intergenic
CCATGTTCAACCCTCACAAG+AGG 0.611064 7_3:+77352193 Msa1125880:CDS
CAAGAAAGTGAAGTGAGAGG+AGG 0.612857 7_3:+77351294 Msa1125880:CDS
TAGACGACCACCACCAAGGA+GGG 0.617242 7_3:+77352052 Msa1125880:CDS
ACATGATGTTCAAATCTCGA+TGG 0.619431 7_3:+77352127 Msa1125880:CDS
CAAAGCGTCTCACCAACACT+GGG 0.625021 7_3:+77351322 Msa1125880:CDS
GGATGTTTCATCTAACTGGA+TGG 0.629602 7_3:-77351484 None:intergenic
TTTGTTGGATTGGGAGCAAG+TGG 0.640642 7_3:+77352256 Msa1125880:CDS
GTAGGGTAGAAACGATAACC+TGG 0.640687 7_3:-77350689 None:intergenic
CCCATGTTCAAAATGCTCAA+GGG 0.648110 7_3:+77352081 Msa1125880:CDS
AGTATGGACAATATGCCACC+AGG 0.650912 7_3:+77350671 Msa1125880:exon
ACAATATCACGTTAACATCG+TGG 0.656016 7_3:-77352451 None:intergenic
AACATGATTAGGAGATCCAG+TGG 0.656277 7_3:-77351355 None:intergenic
GTATGAGAGACACGGAACAA+TGG 0.656880 7_3:+77351253 Msa1125880:CDS
AGAGGCAAGTATGAGAGACA+CGG 0.662506 7_3:+77351245 Msa1125880:CDS
AGGCAAGAAAGTGAAGTGAG+AGG 0.663868 7_3:+77351291 Msa1125880:CDS
TTGATAGACGACCACCACCA+AGG 0.683488 7_3:+77352048 Msa1125880:CDS
ATAGACGACCACCACCAAGG+AGG 0.747279 7_3:+77352051 Msa1125880:CDS
GGGTAGAAACGATAACCTGG+TGG 0.760431 7_3:-77350686 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTTAGTTAATTTGTTTTA+CGG + chr7_3:77351726-77351745 Msa1125880:intron 10.0%
!!! TTTGATATTGATTATTTAAT+TGG + chr7_3:77351961-77351980 Msa1125880:intron 10.0%
!!! AATTTAGTTAATTTGTTTTA+CGG + chr7_3:77351726-77351745 Msa1125880:intron 10.0%
!!! TTTGATATTGATTATTTAAT+TGG + chr7_3:77351961-77351980 Msa1125880:intron 10.0%
!! TACTAAAAAAGAAAAAAGTA+TGG + chr7_3:77350655-77350674 Msa1125880:exon 15.0%
!! ATAACTCAAAAAGAAAAAAA+AGG + chr7_3:77351005-77351024 Msa1125880:intron 15.0%
!!! TTTTATTCAAAATACTTAAC+TGG - chr7_3:77351064-77351083 None:intergenic 15.0%
!! ATTTACAATATTGCAATATA+TGG - chr7_3:77351172-77351191 None:intergenic 15.0%
!!! ATTTAGTTAATTTGTTTTAC+GGG + chr7_3:77351727-77351746 Msa1125880:intron 15.0%
!! TACTAAAAAAGAAAAAAGTA+TGG + chr7_3:77350655-77350674 Msa1125880:exon 15.0%
!! ATAACTCAAAAAGAAAAAAA+AGG + chr7_3:77351005-77351024 Msa1125880:intron 15.0%
!!! TTTTATTCAAAATACTTAAC+TGG - chr7_3:77351064-77351083 None:intergenic 15.0%
!! ATTTACAATATTGCAATATA+TGG - chr7_3:77351172-77351191 None:intergenic 15.0%
!!! ATTTAGTTAATTTGTTTTAC+GGG + chr7_3:77351727-77351746 Msa1125880:intron 15.0%
!! AGTTACAATAAGATATTACT+AGG + chr7_3:77350968-77350987 Msa1125880:intron 20.0%
!!! TTGCAATATATGGATTTTTT+CGG - chr7_3:77351162-77351181 None:intergenic 20.0%
!!! CTAACAGACTTTATTTTTTT+AGG - chr7_3:77351566-77351585 None:intergenic 20.0%
!! AATTCAAACCAATATAAATC+AGG - chr7_3:77351609-77351628 None:intergenic 20.0%
!!! TTTAGTTAATTTGTTTTACG+GGG + chr7_3:77351728-77351747 Msa1125880:intron 20.0%
!!! CTATCTTTATTCTTTTTTTG+AGG + chr7_3:77351795-77351814 Msa1125880:intron 20.0%
!!! TTTGTTTTGTTTTGTTTTAC+AGG + chr7_3:77351879-77351898 Msa1125880:intron 20.0%
!!! ATTAACCTTTTGATTAATAC+TGG + chr7_3:77351925-77351944 Msa1125880:intron 20.0%
!!! TCTAATTTTCTCCTATATTA+TGG - chr7_3:77352302-77352321 None:intergenic 20.0%
!! AATGACGAAAAAAAAAATTG+TGG + chr7_3:77352358-77352377 Msa1125880:three_prime_UTR 20.0%
!! ATGATGACAAATATTTGTTT+CGG + chr7_3:77352394-77352413 Msa1125880:three_prime_UTR 20.0%
!! AGTTACAATAAGATATTACT+AGG + chr7_3:77350968-77350987 Msa1125880:intron 20.0%
!!! TTGCAATATATGGATTTTTT+CGG - chr7_3:77351162-77351181 None:intergenic 20.0%
!!! CTAACAGACTTTATTTTTTT+AGG - chr7_3:77351566-77351585 None:intergenic 20.0%
!! AATTCAAACCAATATAAATC+AGG - chr7_3:77351609-77351628 None:intergenic 20.0%
!!! TTTAGTTAATTTGTTTTACG+GGG + chr7_3:77351728-77351747 Msa1125880:intron 20.0%
!!! CTATCTTTATTCTTTTTTTG+AGG + chr7_3:77351795-77351814 Msa1125880:intron 20.0%
!!! TTTGTTTTGTTTTGTTTTAC+AGG + chr7_3:77351879-77351898 Msa1125880:intron 20.0%
!!! ATTAACCTTTTGATTAATAC+TGG + chr7_3:77351925-77351944 Msa1125880:intron 20.0%
!!! TCTAATTTTCTCCTATATTA+TGG - chr7_3:77352302-77352321 None:intergenic 20.0%
!! AATGACGAAAAAAAAAATTG+TGG + chr7_3:77352358-77352377 Msa1125880:three_prime_UTR 20.0%
!! ATGATGACAAATATTTGTTT+CGG + chr7_3:77352394-77352413 Msa1125880:three_prime_UTR 20.0%
! TATATTAACGACTGGTATAA+CGG - chr7_3:77350783-77350802 None:intergenic 25.0%
! TAATCGTATATATTAACGAC+TGG - chr7_3:77350791-77350810 None:intergenic 25.0%
! AATTGATAGATCTCTAACTT+TGG + chr7_3:77350909-77350928 Msa1125880:intron 25.0%
!!! TGCAATATATGGATTTTTTC+GGG - chr7_3:77351161-77351180 None:intergenic 25.0%
!!! TATTGGTTTTCAGAAATTTC+AGG + chr7_3:77351222-77351241 Msa1125880:intron 25.0%
! TCTGAAGAATAAACATGATT+AGG - chr7_3:77351369-77351388 None:intergenic 25.0%
! GTATACAACCTGATTTATAT+TGG + chr7_3:77351598-77351617 Msa1125880:intron 25.0%
!!! TTTTTGAGGTTCATATTAGA+TGG + chr7_3:77351809-77351828 Msa1125880:intron 25.0%
! ATTAGCCAGTATTAATCAAA+AGG - chr7_3:77351933-77351952 None:intergenic 25.0%
! TATTTAATTGGTTGCAGTTA+AGG + chr7_3:77351973-77351992 Msa1125880:intron 25.0%
!!! ACTTTGATTTTTTGTACACT+CGG - chr7_3:77352016-77352035 None:intergenic 25.0%
!! ACAAAAAATCAAAGTGCTTA+AGG + chr7_3:77352021-77352040 Msa1125880:CDS 25.0%
!! CAAAAAATCAAAGTGCTTAA+GGG + chr7_3:77352022-77352041 Msa1125880:CDS 25.0%
! TATATTAACGACTGGTATAA+CGG - chr7_3:77350783-77350802 None:intergenic 25.0%
! TAATCGTATATATTAACGAC+TGG - chr7_3:77350791-77350810 None:intergenic 25.0%
! AATTGATAGATCTCTAACTT+TGG + chr7_3:77350909-77350928 Msa1125880:intron 25.0%
!!! TGCAATATATGGATTTTTTC+GGG - chr7_3:77351161-77351180 None:intergenic 25.0%
!!! TATTGGTTTTCAGAAATTTC+AGG + chr7_3:77351222-77351241 Msa1125880:intron 25.0%
! TCTGAAGAATAAACATGATT+AGG - chr7_3:77351369-77351388 None:intergenic 25.0%
! GTATACAACCTGATTTATAT+TGG + chr7_3:77351598-77351617 Msa1125880:intron 25.0%
!!! TTTTTGAGGTTCATATTAGA+TGG + chr7_3:77351809-77351828 Msa1125880:intron 25.0%
! ATTAGCCAGTATTAATCAAA+AGG - chr7_3:77351933-77351952 None:intergenic 25.0%
! TATTTAATTGGTTGCAGTTA+AGG + chr7_3:77351973-77351992 Msa1125880:intron 25.0%
!!! ACTTTGATTTTTTGTACACT+CGG - chr7_3:77352016-77352035 None:intergenic 25.0%
!! ACAAAAAATCAAAGTGCTTA+AGG + chr7_3:77352021-77352040 Msa1125880:CDS 25.0%
!! CAAAAAATCAAAGTGCTTAA+GGG + chr7_3:77352022-77352041 Msa1125880:CDS 25.0%
AAATAAGCTCTTCTTCTGTA+GGG - chr7_3:77350709-77350728 None:intergenic 30.0%
TATCTTCACAATATGCTTGA+AGG + chr7_3:77350734-77350753 Msa1125880:CDS 30.0%
TCATGGAAAGATTTATACGT+GGG - chr7_3:77350829-77350848 None:intergenic 30.0%
!! AATGGTTCTTTTTCATTCCA+AGG + chr7_3:77351271-77351290 Msa1125880:CDS 30.0%
! AGAACTATGGTTTTCTATAG+TGG + chr7_3:77351411-77351430 Msa1125880:CDS 30.0%
! CAATCAGTTTTCTTTCCATT+TGG - chr7_3:77351444-77351463 None:intergenic 30.0%
CAAATGGAAAGAAAACTGAT+TGG + chr7_3:77351442-77351461 Msa1125880:CDS 30.0%
TTGGAAAATGAACGAGTATA+AGG + chr7_3:77351461-77351480 Msa1125880:CDS 30.0%
ATATGATATGTACGTACCTT+AGG - chr7_3:77351528-77351547 None:intergenic 30.0%
TATCATATGCATCTTGAACT+AGG + chr7_3:77351540-77351559 Msa1125880:intron 30.0%
ACCTTGAATTTCGTACATAT+TGG + chr7_3:77351644-77351663 Msa1125880:intron 30.0%
ACCAATATGTACGAAATTCA+AGG - chr7_3:77351648-77351667 None:intergenic 30.0%
! TAATAAGGCGTGATTTTCAT+GGG + chr7_3:77351757-77351776 Msa1125880:intron 30.0%
! GTGATTTTCATGGGAAAAAA+TGG + chr7_3:77351766-77351785 Msa1125880:intron 30.0%
TATGATCCACGATATAAAAC+TGG - chr7_3:77351838-77351857 None:intergenic 30.0%
CATAATCAGCAATATCCATT+TGG - chr7_3:77352232-77352251 None:intergenic 30.0%
! ATTATGATGCTTTGTTGGAT+TGG + chr7_3:77352246-77352265 Msa1125880:CDS 30.0%
! TTATGATGCTTTGTTGGATT+GGG + chr7_3:77352247-77352266 Msa1125880:CDS 30.0%
TACGTGCAAGATTAAATTTG+TGG + chr7_3:77352323-77352342 Msa1125880:three_prime_UTR 30.0%
TGCAAGATTAAATTTGTGGT+GGG + chr7_3:77352327-77352346 Msa1125880:three_prime_UTR 30.0%
AAATAAGCTCTTCTTCTGTA+GGG - chr7_3:77350709-77350728 None:intergenic 30.0%
TATCTTCACAATATGCTTGA+AGG + chr7_3:77350734-77350753 Msa1125880:CDS 30.0%
TCATGGAAAGATTTATACGT+GGG - chr7_3:77350829-77350848 None:intergenic 30.0%
!! AATGGTTCTTTTTCATTCCA+AGG + chr7_3:77351271-77351290 Msa1125880:CDS 30.0%
! AGAACTATGGTTTTCTATAG+TGG + chr7_3:77351411-77351430 Msa1125880:CDS 30.0%
! CAATCAGTTTTCTTTCCATT+TGG - chr7_3:77351444-77351463 None:intergenic 30.0%
CAAATGGAAAGAAAACTGAT+TGG + chr7_3:77351442-77351461 Msa1125880:CDS 30.0%
TTGGAAAATGAACGAGTATA+AGG + chr7_3:77351461-77351480 Msa1125880:CDS 30.0%
ATATGATATGTACGTACCTT+AGG - chr7_3:77351528-77351547 None:intergenic 30.0%
TATCATATGCATCTTGAACT+AGG + chr7_3:77351540-77351559 Msa1125880:intron 30.0%
ACCTTGAATTTCGTACATAT+TGG + chr7_3:77351644-77351663 Msa1125880:intron 30.0%
ACCAATATGTACGAAATTCA+AGG - chr7_3:77351648-77351667 None:intergenic 30.0%
! TAATAAGGCGTGATTTTCAT+GGG + chr7_3:77351757-77351776 Msa1125880:intron 30.0%
! GTGATTTTCATGGGAAAAAA+TGG + chr7_3:77351766-77351785 Msa1125880:intron 30.0%
TATGATCCACGATATAAAAC+TGG - chr7_3:77351838-77351857 None:intergenic 30.0%
CATAATCAGCAATATCCATT+TGG - chr7_3:77352232-77352251 None:intergenic 30.0%
! ATTATGATGCTTTGTTGGAT+TGG + chr7_3:77352246-77352265 Msa1125880:CDS 30.0%
! TTATGATGCTTTGTTGGATT+GGG + chr7_3:77352247-77352266 Msa1125880:CDS 30.0%
TACGTGCAAGATTAAATTTG+TGG + chr7_3:77352323-77352342 Msa1125880:three_prime_UTR 30.0%
TGCAAGATTAAATTTGTGGT+GGG + chr7_3:77352327-77352346 Msa1125880:three_prime_UTR 30.0%
GAAATAAGCTCTTCTTCTGT+AGG - chr7_3:77350710-77350729 None:intergenic 35.0%
GTCATGGAAAGATTTATACG+TGG - chr7_3:77350830-77350849 None:intergenic 35.0%
ACAATAACGTAGTCAAGTCA+TGG - chr7_3:77350846-77350865 None:intergenic 35.0%
! GTTTTCAGAAATTTCAGGAG+AGG + chr7_3:77351227-77351246 Msa1125880:intron 35.0%
TCTTCAGATAATCGCATCAT+TGG + chr7_3:77351381-77351400 Msa1125880:CDS 35.0%
CATTGGAGTGAAAAGAACTA+TGG + chr7_3:77351398-77351417 Msa1125880:CDS 35.0%
AAGAGGATGTTTCATCTAAC+TGG - chr7_3:77351491-77351510 None:intergenic 35.0%
TTCAAACAAAGTAGCTCCTA+AGG + chr7_3:77351509-77351528 Msa1125880:CDS 35.0%
TTTACGGGGTCAATCTAATA+AGG + chr7_3:77351742-77351761 Msa1125880:intron 35.0%
! CTAATAAGGCGTGATTTTCA+TGG + chr7_3:77351756-77351775 Msa1125880:intron 35.0%
! TTTTCATGGGAAAAAATGGC+AGG + chr7_3:77351770-77351789 Msa1125880:intron 35.0%
TTTCATGGGAAAAAATGGCA+GGG + chr7_3:77351771-77351790 Msa1125880:intron 35.0%
!! TGGAAACCAGTTTTATATCG+TGG + chr7_3:77351829-77351848 Msa1125880:intron 35.0%
ACATGATGTTCAAATCTCGA+TGG + chr7_3:77352127-77352146 Msa1125880:CDS 35.0%
! TGCTGATTATGATGCTTTGT+TGG + chr7_3:77352241-77352260 Msa1125880:CDS 35.0%
GTGCAAGATTAAATTTGTGG+TGG + chr7_3:77352326-77352345 Msa1125880:three_prime_UTR 35.0%
ACAATATCACGTTAACATCG+TGG - chr7_3:77352454-77352473 None:intergenic 35.0%
GAAATAAGCTCTTCTTCTGT+AGG - chr7_3:77350710-77350729 None:intergenic 35.0%
GTCATGGAAAGATTTATACG+TGG - chr7_3:77350830-77350849 None:intergenic 35.0%
ACAATAACGTAGTCAAGTCA+TGG - chr7_3:77350846-77350865 None:intergenic 35.0%
! GTTTTCAGAAATTTCAGGAG+AGG + chr7_3:77351227-77351246 Msa1125880:intron 35.0%
TCTTCAGATAATCGCATCAT+TGG + chr7_3:77351381-77351400 Msa1125880:CDS 35.0%
CATTGGAGTGAAAAGAACTA+TGG + chr7_3:77351398-77351417 Msa1125880:CDS 35.0%
AAGAGGATGTTTCATCTAAC+TGG - chr7_3:77351491-77351510 None:intergenic 35.0%
TTCAAACAAAGTAGCTCCTA+AGG + chr7_3:77351509-77351528 Msa1125880:CDS 35.0%
TTTACGGGGTCAATCTAATA+AGG + chr7_3:77351742-77351761 Msa1125880:intron 35.0%
! CTAATAAGGCGTGATTTTCA+TGG + chr7_3:77351756-77351775 Msa1125880:intron 35.0%
! TTTTCATGGGAAAAAATGGC+AGG + chr7_3:77351770-77351789 Msa1125880:intron 35.0%
TTTCATGGGAAAAAATGGCA+GGG + chr7_3:77351771-77351790 Msa1125880:intron 35.0%
!! TGGAAACCAGTTTTATATCG+TGG + chr7_3:77351829-77351848 Msa1125880:intron 35.0%
ACATGATGTTCAAATCTCGA+TGG + chr7_3:77352127-77352146 Msa1125880:CDS 35.0%
! TGCTGATTATGATGCTTTGT+TGG + chr7_3:77352241-77352260 Msa1125880:CDS 35.0%
GTGCAAGATTAAATTTGTGG+TGG + chr7_3:77352326-77352345 Msa1125880:three_prime_UTR 35.0%
ACAATATCACGTTAACATCG+TGG - chr7_3:77352454-77352473 None:intergenic 35.0%
TTTATACGTGGGAGTTGTGA+TGG - chr7_3:77350818-77350837 None:intergenic 40.0%
AACATGATTAGGAGATCCAG+TGG - chr7_3:77351358-77351377 None:intergenic 40.0%
! TATAGTGGAAGAGCTCCAAA+TGG + chr7_3:77351426-77351445 Msa1125880:CDS 40.0%
GGATGTTTCATCTAACTGGA+TGG - chr7_3:77351487-77351506 None:intergenic 40.0%
! AGGAGCTACTTTGTTTGAAG+AGG - chr7_3:77351508-77351527 None:intergenic 40.0%
ACCCATGTTCAAAATGCTCA+AGG + chr7_3:77352080-77352099 Msa1125880:CDS 40.0%
! CCCTTGAGCATTTTGAACAT+GGG - chr7_3:77352084-77352103 None:intergenic 40.0%
CCCATGTTCAAAATGCTCAA+GGG + chr7_3:77352081-77352100 Msa1125880:CDS 40.0%
! GTTCGCAAGTTGAATCTTTC+TGG - chr7_3:77352109-77352128 None:intergenic 40.0%
!! AGCAAGTGGATTGGTTCTTA+GGG + chr7_3:77352270-77352289 Msa1125880:CDS 40.0%
TTTATACGTGGGAGTTGTGA+TGG - chr7_3:77350818-77350837 None:intergenic 40.0%
AACATGATTAGGAGATCCAG+TGG - chr7_3:77351358-77351377 None:intergenic 40.0%
! TATAGTGGAAGAGCTCCAAA+TGG + chr7_3:77351426-77351445 Msa1125880:CDS 40.0%
GGATGTTTCATCTAACTGGA+TGG - chr7_3:77351487-77351506 None:intergenic 40.0%
! AGGAGCTACTTTGTTTGAAG+AGG - chr7_3:77351508-77351527 None:intergenic 40.0%
ACCCATGTTCAAAATGCTCA+AGG + chr7_3:77352080-77352099 Msa1125880:CDS 40.0%
! CCCTTGAGCATTTTGAACAT+GGG - chr7_3:77352084-77352103 None:intergenic 40.0%
CCCATGTTCAAAATGCTCAA+GGG + chr7_3:77352081-77352100 Msa1125880:CDS 40.0%
! GTTCGCAAGTTGAATCTTTC+TGG - chr7_3:77352109-77352128 None:intergenic 40.0%
!! AGCAAGTGGATTGGTTCTTA+GGG + chr7_3:77352270-77352289 Msa1125880:CDS 40.0%
AGTATGGACAATATGCCACC+AGG + chr7_3:77350671-77350690 Msa1125880:exon 45.0%
GTAGGGTAGAAACGATAACC+TGG - chr7_3:77350692-77350711 None:intergenic 45.0%
AGAGGCAAGTATGAGAGACA+CGG + chr7_3:77351245-77351264 Msa1125880:CDS 45.0%
GTATGAGAGACACGGAACAA+TGG + chr7_3:77351253-77351272 Msa1125880:CDS 45.0%
CTCACTTCACTTTCTTGCCT+TGG - chr7_3:77351291-77351310 None:intergenic 45.0%
AGGCAAGAAAGTGAAGTGAG+AGG + chr7_3:77351291-77351310 Msa1125880:CDS 45.0%
CAAGAAAGTGAAGTGAGAGG+AGG + chr7_3:77351294-77351313 Msa1125880:CDS 45.0%
! GCCCTTGAGCATTTTGAACA+TGG - chr7_3:77352085-77352104 None:intergenic 45.0%
TCTATAGAGGAAGAGCTCTC+TGG - chr7_3:77352173-77352192 None:intergenic 45.0%
GGGTTGAACATGGTCTATAG+AGG - chr7_3:77352186-77352205 None:intergenic 45.0%
! TTTGTTGGATTGGGAGCAAG+TGG + chr7_3:77352256-77352275 Msa1125880:CDS 45.0%
!! GAGCAAGTGGATTGGTTCTT+AGG + chr7_3:77352269-77352288 Msa1125880:CDS 45.0%
!! AGTGGATTGGTTCTTAGGGT+CGG + chr7_3:77352274-77352293 Msa1125880:CDS 45.0%
TAGGGTCGGAGCCATAATAT+AGG + chr7_3:77352288-77352307 Msa1125880:exon 45.0%
AGTATGGACAATATGCCACC+AGG + chr7_3:77350671-77350690 Msa1125880:exon 45.0%
GTAGGGTAGAAACGATAACC+TGG - chr7_3:77350692-77350711 None:intergenic 45.0%
AGAGGCAAGTATGAGAGACA+CGG + chr7_3:77351245-77351264 Msa1125880:CDS 45.0%
GTATGAGAGACACGGAACAA+TGG + chr7_3:77351253-77351272 Msa1125880:CDS 45.0%
CTCACTTCACTTTCTTGCCT+TGG - chr7_3:77351291-77351310 None:intergenic 45.0%
AGGCAAGAAAGTGAAGTGAG+AGG + chr7_3:77351291-77351310 Msa1125880:CDS 45.0%
CAAGAAAGTGAAGTGAGAGG+AGG + chr7_3:77351294-77351313 Msa1125880:CDS 45.0%
! GCCCTTGAGCATTTTGAACA+TGG - chr7_3:77352085-77352104 None:intergenic 45.0%
TCTATAGAGGAAGAGCTCTC+TGG - chr7_3:77352173-77352192 None:intergenic 45.0%
GGGTTGAACATGGTCTATAG+AGG - chr7_3:77352186-77352205 None:intergenic 45.0%
! TTTGTTGGATTGGGAGCAAG+TGG + chr7_3:77352256-77352275 Msa1125880:CDS 45.0%
!! GAGCAAGTGGATTGGTTCTT+AGG + chr7_3:77352269-77352288 Msa1125880:CDS 45.0%
!! AGTGGATTGGTTCTTAGGGT+CGG + chr7_3:77352274-77352293 Msa1125880:CDS 45.0%
TAGGGTCGGAGCCATAATAT+AGG + chr7_3:77352288-77352307 Msa1125880:exon 45.0%
!!! TTTTTTTCTTATAAAATTAT+TGG + chr7_3:77351205-77351224 Msa1125880:intron 5.0%
!!! TTTTTTTCTTATAAAATTAT+TGG + chr7_3:77351205-77351224 Msa1125880:intron 5.0%
GGGTAGAAACGATAACCTGG+TGG - chr7_3:77350689-77350708 None:intergenic 50.0%
! CAAAGCGTCTCACCAACACT+GGG + chr7_3:77351322-77351341 Msa1125880:CDS 50.0%
TTGATAGACGACCACCACCA+AGG + chr7_3:77352048-77352067 Msa1125880:CDS 50.0%
! ACATGGGTTGTAACCCTCCT+TGG - chr7_3:77352068-77352087 None:intergenic 50.0%
CCTCTTGTGAGGGTTGAACA+TGG - chr7_3:77352196-77352215 None:intergenic 50.0%
CCATGTTCAACCCTCACAAG+AGG + chr7_3:77352193-77352212 Msa1125880:CDS 50.0%
GTTCAACCCTCACAAGAGGT+TGG + chr7_3:77352197-77352216 Msa1125880:CDS 50.0%
GCTTCTCCAACCTCTTGTGA+GGG - chr7_3:77352206-77352225 None:intergenic 50.0%
AGCTTCTCCAACCTCTTGTG+AGG - chr7_3:77352207-77352226 None:intergenic 50.0%
GGTTGGAGAAGCTAGCCAAA+TGG + chr7_3:77352214-77352233 Msa1125880:CDS 50.0%
! TGGATTGGGAGCAAGTGGAT+TGG + chr7_3:77352261-77352280 Msa1125880:CDS 50.0%
GGGTAGAAACGATAACCTGG+TGG - chr7_3:77350689-77350708 None:intergenic 50.0%
! CAAAGCGTCTCACCAACACT+GGG + chr7_3:77351322-77351341 Msa1125880:CDS 50.0%
TTGATAGACGACCACCACCA+AGG + chr7_3:77352048-77352067 Msa1125880:CDS 50.0%
! ACATGGGTTGTAACCCTCCT+TGG - chr7_3:77352068-77352087 None:intergenic 50.0%
CCTCTTGTGAGGGTTGAACA+TGG - chr7_3:77352196-77352215 None:intergenic 50.0%
CCATGTTCAACCCTCACAAG+AGG + chr7_3:77352193-77352212 Msa1125880:CDS 50.0%
GTTCAACCCTCACAAGAGGT+TGG + chr7_3:77352197-77352216 Msa1125880:CDS 50.0%
GCTTCTCCAACCTCTTGTGA+GGG - chr7_3:77352206-77352225 None:intergenic 50.0%
AGCTTCTCCAACCTCTTGTG+AGG - chr7_3:77352207-77352226 None:intergenic 50.0%
GGTTGGAGAAGCTAGCCAAA+TGG + chr7_3:77352214-77352233 Msa1125880:CDS 50.0%
! TGGATTGGGAGCAAGTGGAT+TGG + chr7_3:77352261-77352280 Msa1125880:CDS 50.0%
!! CCAGTGTTGGTGAGACGCTT+TGG - chr7_3:77351324-77351343 None:intergenic 55.0%
! CCAAAGCGTCTCACCAACAC+TGG + chr7_3:77351321-77351340 Msa1125880:CDS 55.0%
GTCTCACCAACACTGGGTAC+TGG + chr7_3:77351328-77351347 Msa1125880:CDS 55.0%
GGCTTTCCAGTACCCAGTGT+TGG - chr7_3:77351337-77351356 None:intergenic 55.0%
!! ACTGGGTACTGGAAAGCCAC+TGG + chr7_3:77351339-77351358 Msa1125880:CDS 55.0%
ATAGACGACCACCACCAAGG+AGG + chr7_3:77352051-77352070 Msa1125880:CDS 55.0%
TAGACGACCACCACCAAGGA+GGG + chr7_3:77352052-77352071 Msa1125880:CDS 55.0%
GTTGTAACCCTCCTTGGTGG+TGG - chr7_3:77352062-77352081 None:intergenic 55.0%
TGGGTTGTAACCCTCCTTGG+TGG - chr7_3:77352065-77352084 None:intergenic 55.0%
!! CCAGTGTTGGTGAGACGCTT+TGG - chr7_3:77351324-77351343 None:intergenic 55.0%
! CCAAAGCGTCTCACCAACAC+TGG + chr7_3:77351321-77351340 Msa1125880:CDS 55.0%
GTCTCACCAACACTGGGTAC+TGG + chr7_3:77351328-77351347 Msa1125880:CDS 55.0%
GGCTTTCCAGTACCCAGTGT+TGG - chr7_3:77351337-77351356 None:intergenic 55.0%
!! ACTGGGTACTGGAAAGCCAC+TGG + chr7_3:77351339-77351358 Msa1125880:CDS 55.0%
ATAGACGACCACCACCAAGG+AGG + chr7_3:77352051-77352070 Msa1125880:CDS 55.0%
TAGACGACCACCACCAAGGA+GGG + chr7_3:77352052-77352071 Msa1125880:CDS 55.0%
GTTGTAACCCTCCTTGGTGG+TGG - chr7_3:77352062-77352081 None:intergenic 55.0%
TGGGTTGTAACCCTCCTTGG+TGG - chr7_3:77352065-77352084 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 77350653 77352507 77350653 ID=Msa1125880;Name=Msa1125880
chr7_3 mRNA 77350653 77352507 77350653 ID=Msa1125880-mRNA-1;Parent=Msa1125880;Name=Msa1125880-mRNA-1;_AED=0.03;_eAED=0.03;_QI=21|1|0.66|1|1|1|3|203|255
chr7_3 exon 77350653 77350830 77350653 ID=Msa1125880-mRNA-1:exon:21274;Parent=Msa1125880-mRNA-1
chr7_3 exon 77351235 77351530 77351235 ID=Msa1125880-mRNA-1:exon:21275;Parent=Msa1125880-mRNA-1
chr7_3 exon 77351990 77352507 77351990 ID=Msa1125880-mRNA-1:exon:21276;Parent=Msa1125880-mRNA-1
chr7_3 five_prime_UTR 77350653 77350673 77350653 ID=Msa1125880-mRNA-1:five_prime_utr;Parent=Msa1125880-mRNA-1
chr7_3 CDS 77350674 77350830 77350674 ID=Msa1125880-mRNA-1:cds;Parent=Msa1125880-mRNA-1
chr7_3 CDS 77351235 77351530 77351235 ID=Msa1125880-mRNA-1:cds;Parent=Msa1125880-mRNA-1
chr7_3 CDS 77351990 77352304 77351990 ID=Msa1125880-mRNA-1:cds;Parent=Msa1125880-mRNA-1
chr7_3 three_prime_UTR 77352305 77352507 77352305 ID=Msa1125880-mRNA-1:three_prime_utr;Parent=Msa1125880-mRNA-1
Gene Sequence

>Msa1125880

ATGGACAATATGCCACCAGGTTATCGTTTCTACCCTACAGAAGAAGAGCTTATTTCGTTCTATCTTCACAATATGCTTGAAGGAGAGAAAGAATACACGATTCGTACCGTTATACCAGTCGTTAATATATACGATTACAATCCATCACAACTCCCACAAATTTCAGGAGAGGCAAGTATGAGAGACACGGAACAATGGTTCTTTTTCATTCCAAGGCAAGAAAGTGAAGTGAGAGGAGGAAGACCAAAGCGTCTCACCAACACTGGGTACTGGAAAGCCACTGGATCTCCTAATCATGTTTATTCTTCAGATAATCGCATCATTGGAGTGAAAAGAACTATGGTTTTCTATAGTGGAAGAGCTCCAAATGGAAAGAAAACTGATTGGAAAATGAACGAGTATAAGGCCATCCAGTTAGATGAAACATCCTCTTCAAACAAAGTAGCTCCTAAGTTAAGGCAAGAATTCAGTTTATGCCGAGTGTACAAAAAATCAAAGTGCTTAAGGGCATTTGATAGACGACCACCACCAAGGAGGGTTACAACCCATGTTCAAAATGCTCAAGGGCACCAGAAAGATTCAACTTGCGAACATGATGTTCAAATCTCGATGGACATAAGTGCAACAAACTCACCAGAGAGCTCTTCCTCTATAGACCATGTTCAACCCTCACAAGAGGTTGGAGAAGCTAGCCAAATGGATATTGCTGATTATGATGCTTTGTTGGATTGGGAGCAAGTGGATTGGTTCTTAGGGTCGGAGCCATAA
Protein sequence

>Msa1125880

MDNMPPGYRFYPTEEELISFYLHNMLEGEKEYTIRTVIPVVNIYDYNPSQLPQISGEASMRDTEQWFFFIPRQESEVRGGRPKRLTNTGYWKATGSPNHVYSSDNRIIGVKRTMVFYSGRAPNGKKTDWKMNEYKAIQLDETSSSNKVAPKLRQEFSLCRVYKKSKCLRAFDRRPPPRRVTTHVQNAQGHQKDSTCEHDVQISMDISATNSPESSSSIDHVQPSQEVGEASQMDIADYDALLDWEQVDWFLGSEP*