AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0461070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0461070 MtrunA17_Chr3g0110481 95.109 184 9 0 1 184 1 184 2.13e-114 322
Msa0461070 MtrunA17_Chr5g0434691 64.865 148 46 3 1 146 1 144 1.19e-48 157
Msa0461070 MtrunA17_Chr8g0392851 34.272 213 93 8 14 179 28 240 4.98e-16 75.1
Msa0461070 MtrunA17_Chr6g0482691 49.254 67 31 2 14 77 43 109 4.94e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0461070 AT1G14900.1 48.913 184 80 4 11 182 21 202 7.91e-39 132
Msa0461070 AT1G48620.1 50.000 62 31 0 16 77 78 139 5.66e-14 69.7
Msa0461070 AT3G18035.2 46.575 73 39 0 14 86 66 138 7.33e-14 68.9
Msa0461070 AT3G18035.1 46.575 73 39 0 14 86 66 138 7.70e-14 69.3

Find 96 sgRNAs with CRISPR-Local

Find 364 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAAACAATTACACTCTATTT+AGG 0.154977 3_3:+58844216 None:intergenic
TAGAGTGTAATTGTTTAGTT+TGG 0.223116 3_3:-58844210 Msa0461070:three_prime_UTR
CCCCTTCTAGGTGGAGCATT+TGG 0.228265 3_3:+58844589 None:intergenic
GGTCTTCCACGGCCCCTTCT+AGG 0.231385 3_3:+58844577 None:intergenic
AACTCTACTTGTTCTTATTA+AGG 0.246590 3_3:-58846142 Msa0461070:five_prime_UTR
GCCTTCCCTTGTGGAGGCCT+TGG 0.267376 3_3:+58844466 None:intergenic
AATGTTGTGGATTTCATCTT+TGG 0.272357 3_3:+58844319 None:intergenic
CCGGAGGTAGTGGGAGGCCT+AGG 0.290788 3_3:-58844351 Msa0461070:CDS
GGAGGCCTTGGTGGGCCATT+TGG 0.307808 3_3:+58844478 None:intergenic
TGGCGGACGGCCCCTAGGCT+TGG 0.327795 3_3:+58844507 None:intergenic
GAAGGATTAAATGAAGAAAA+TGG 0.328424 3_3:-58844760 Msa0461070:CDS
GGCGGACGGCCCCTAGGCTT+GGG 0.341399 3_3:+58844508 None:intergenic
CCCTTCTAGGTGGAGCATTT+GGG 0.348663 3_3:+58844590 None:intergenic
GGTGGGCCATTTGGATCCTT+TGG 0.352652 3_3:+58844487 None:intergenic
AGAGTGTAATTGTTTAGTTT+GGG 0.355684 3_3:-58844209 Msa0461070:three_prime_UTR
AGGAAGATGTCCCGGCCAAC+TGG 0.370072 3_3:-58844409 Msa0461070:CDS
CTTTGACGGACCATTGCCTT+TGG 0.376697 3_3:-58844383 Msa0461070:CDS
TTCCCTTGTGGAGGCCTTGG+TGG 0.377132 3_3:+58844469 None:intergenic
ACCCAAATGCTCCACCTAGA+AGG 0.393865 3_3:-58844591 Msa0461070:CDS
GCCGTAGGGACCGGAGGTAG+TGG 0.400009 3_3:-58844361 Msa0461070:CDS
TTGCCTTTGGCCGTAGGGAC+CGG 0.418621 3_3:-58844370 Msa0461070:CDS
GTTGTGGATTTCATCTTTGG+AGG 0.419370 3_3:+58844322 None:intergenic
TCCCTTGTGGAGGCCTTGGT+GGG 0.420728 3_3:+58844470 None:intergenic
CGTCAAAGGCTCCAGTTGGC+CGG 0.441170 3_3:+58844398 None:intergenic
GTTGGCCGGGACATCTTCCT+TGG 0.442880 3_3:+58844412 None:intergenic
TAACGCTTAATGATTGATCA+TGG 0.444438 3_3:-58844287 Msa0461070:exon
GTGACTCATGTGAGCTCTGT+TGG 0.445552 3_3:-58844129 Msa0461070:three_prime_UTR
AGGCTTGGGTGGTGAGTACA+TGG 0.445822 3_3:+58844522 None:intergenic
TCCTTTGGCGGACGGCCCCT+AGG 0.449999 3_3:+58844502 None:intergenic
CGGCCAACTGGAGCCTTTGA+CGG 0.450796 3_3:-58844397 Msa0461070:CDS
ACAGTGGTGAGTTAGTCTTT+TGG 0.460190 3_3:-58844636 Msa0461070:CDS
CATTTGGATCCTTTGGCGGA+CGG 0.461482 3_3:+58844494 None:intergenic
GTATGTGGATTCTATGTACT+TGG 0.467423 3_3:+58844717 None:intergenic
GGGCCATTTGGATCCTTTGG+CGG 0.481488 3_3:+58844490 None:intergenic
GTAGTGGGAGGCCTAGGGGT+AGG 0.491357 3_3:-58844345 Msa0461070:CDS
ATCTTCCTTGGCCGACCTCT+AGG 0.492050 3_3:+58844424 None:intergenic
GTCAAAGGCTCCAGTTGGCC+GGG 0.492506 3_3:+58844399 None:intergenic
TGGAGCATTTGGGTCACGCT+TGG 0.494330 3_3:+58844600 None:intergenic
CGGAGGTAGTGGGAGGCCTA+GGG 0.498777 3_3:-58844350 Msa0461070:CDS
GTCGGCCAAGGAAGATGTCC+CGG 0.505815 3_3:-58844417 Msa0461070:CDS
GTCCCTACGGCCAAAGGCAA+TGG 0.508324 3_3:+58844373 None:intergenic
ACTTGCACCTTGCAAGAATG+AGG 0.510068 3_3:-58844660 Msa0461070:CDS
ATCTTTGGAGGCCTACCCCT+AGG 0.510686 3_3:+58844334 None:intergenic
CACTGTCCCTCATTCTTGCA+AGG 0.512464 3_3:+58844653 None:intergenic
CGGTAAGATGGAAGTGAAAG+AGG 0.513286 3_3:+58846037 None:intergenic
CCCAAATGCTCCACCTAGAA+GGG 0.513300 3_3:-58844590 Msa0461070:CDS
GTTAATTTCTGCCAATGTTG+TGG 0.514440 3_3:+58844306 None:intergenic
GGACCATTGCCTTTGGCCGT+AGG 0.515325 3_3:-58844376 Msa0461070:CDS
GTACTCACCACCCAAGCCTA+GGG 0.518365 3_3:-58844518 Msa0461070:CDS
GACCATTGCCTTTGGCCGTA+GGG 0.521053 3_3:-58844375 Msa0461070:CDS
CCGTAGGGACCGGAGGTAGT+GGG 0.528589 3_3:-58844360 Msa0461070:CDS
TAGCCTTGGGTGGTCTTCCA+CGG 0.529106 3_3:+58844566 None:intergenic
ACCAAGGCCTCCACAAGGGA+AGG 0.529643 3_3:-58844467 Msa0461070:CDS
TTGAGGCAATCCACCGTATG+TGG 0.529780 3_3:+58844702 None:intergenic
AGGCGTCTGTAGGGACTGGA+AGG 0.531394 3_3:-58844447 Msa0461070:CDS
AAATTTACCTCACGGTAAGA+TGG 0.532072 3_3:+58846025 None:intergenic
TGTACTCACCACCCAAGCCT+AGG 0.534156 3_3:-58844519 Msa0461070:CDS
GCCTAGGGGCCGTCCGCCAA+AGG 0.534448 3_3:-58844503 Msa0461070:CDS
GGGAAGGCGTCTGTAGGGAC+TGG 0.536319 3_3:-58844451 Msa0461070:CDS
GGTGGTGAGTACATGGCTCC+TGG 0.537339 3_3:+58844529 None:intergenic
CCACAAGGGAAGGCGTCTGT+AGG 0.543203 3_3:-58844457 Msa0461070:CDS
CACAAGGGAAGGCGTCTGTA+GGG 0.547961 3_3:-58844456 Msa0461070:CDS
CAAAGGCAATGGTCCGTCAA+AGG 0.549632 3_3:+58844384 None:intergenic
GCTCCACCTAGAAGGGGCCG+TGG 0.552086 3_3:-58844583 Msa0461070:CDS
CCTACAGACGCCTTCCCTTG+TGG 0.552449 3_3:+58844457 None:intergenic
GGACGGCCCCTAGGCTTGGG+TGG 0.552983 3_3:+58844511 None:intergenic
CCTCCGGTCCCTACGGCCAA+AGG 0.554576 3_3:+58844367 None:intergenic
CCTAGGCCTCCCACTACCTC+CGG 0.558992 3_3:+58844351 None:intergenic
CGTCCGCCAAAGGATCCAAA+TGG 0.563685 3_3:-58844493 Msa0461070:CDS
CCCACTACCTCCGGTCCCTA+CGG 0.567874 3_3:+58844360 None:intergenic
GAGTGTAATTGTTTAGTTTG+GGG 0.576450 3_3:-58844208 Msa0461070:three_prime_UTR
AAAGATGAAATCCACAACAT+TGG 0.583669 3_3:-58844317 Msa0461070:CDS
CCTTTGGCCGTAGGGACCGG+AGG 0.589623 3_3:-58844367 Msa0461070:CDS
CTTCCACGGCCCCTTCTAGG+TGG 0.590912 3_3:+58844580 None:intergenic
TAGGGACCGGAGGTAGTGGG+AGG 0.595365 3_3:-58844357 Msa0461070:CDS
GGCCCACCAAGGCCTCCACA+AGG 0.600026 3_3:-58844472 Msa0461070:CDS
AAAGACTCTTTAGCCTTGGG+TGG 0.601047 3_3:+58844556 None:intergenic
GGGCCGTGGAAGACCACCCA+AGG 0.607834 3_3:-58844569 Msa0461070:CDS
GAAGGCCTAGAGGTCGGCCA+AGG 0.613892 3_3:-58844429 Msa0461070:CDS
AGTAGTGCCTTGTGTCCTTG+AGG 0.619214 3_3:+58844685 None:intergenic
TTCACTTCCATCTTACCGTG+AGG 0.629029 3_3:-58846032 Msa0461070:intron
GCCCACCAAGGCCTCCACAA+GGG 0.640714 3_3:-58844471 Msa0461070:CDS
GTAGGGACTGGAAGGCCTAG+AGG 0.641550 3_3:-58844439 Msa0461070:CDS
GGTCCGTCAAAGGCTCCAGT+TGG 0.643165 3_3:+58844394 None:intergenic
CTTGCACCTTGCAAGAATGA+GGG 0.643739 3_3:-58844659 Msa0461070:CDS
GGACTGGAAGGCCTAGAGGT+CGG 0.646141 3_3:-58844435 Msa0461070:CDS
ACATACGGTGGATTGCCTCA+AGG 0.646457 3_3:-58844700 Msa0461070:CDS
TGGATTGCCTCAAGGACACA+AGG 0.647970 3_3:-58844692 Msa0461070:CDS
ACAGACGCCTTCCCTTGTGG+AGG 0.649113 3_3:+58844460 None:intergenic
AAGTACATAGAATCCACATA+CGG 0.657762 3_3:-58844715 Msa0461070:CDS
TACATAGAATCCACATACGG+TGG 0.665446 3_3:-58844712 Msa0461070:CDS
CCAAATGCTCCACCTAGAAG+GGG 0.666505 3_3:-58844589 Msa0461070:CDS
GGAGGTAGTGGGAGGCCTAG+GGG 0.670220 3_3:-58844349 Msa0461070:CDS
AGGATCCAAATGGCCCACCA+AGG 0.671712 3_3:-58844483 Msa0461070:CDS
CTTGCAAGAATGAGGGACAG+TGG 0.678671 3_3:-58844652 Msa0461070:CDS
TACTCACCACCCAAGCCTAG+GGG 0.695431 3_3:-58844517 Msa0461070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAAAATATTTAATTAAT+TGG - chr3_3:58844919-58844938 Msa0461070:intron 0.0%
!! ATAAAAATATTTAATTAATT+GGG - chr3_3:58844920-58844939 Msa0461070:intron 0.0%
!! AATAAAAATATTTAATTAAT+TGG - chr3_3:58844919-58844938 Msa0461070:intron 0.0%
!! ATAAAAATATTTAATTAATT+GGG - chr3_3:58844920-58844939 Msa0461070:intron 0.0%
!! TAAAGATATAAACTTAATTA+AGG + chr3_3:58844774-58844793 None:intergenic 10.0%
!! TTATAAATTCATTAAACAAT+AGG + chr3_3:58844957-58844976 None:intergenic 10.0%
!! TGTTTAATGAATTTATAATA+AGG - chr3_3:58844959-58844978 Msa0461070:intron 10.0%
!! AAATATTAGTATTACTTTAA+AGG - chr3_3:58845146-58845165 Msa0461070:intron 10.0%
!! TAAAGATATAAACTTAATTA+AGG + chr3_3:58844774-58844793 None:intergenic 10.0%
!! TTATAAATTCATTAAACAAT+AGG + chr3_3:58844957-58844976 None:intergenic 10.0%
!! TGTTTAATGAATTTATAATA+AGG - chr3_3:58844959-58844978 Msa0461070:intron 10.0%
!! AAATATTAGTATTACTTTAA+AGG - chr3_3:58845146-58845165 Msa0461070:intron 10.0%
!! TAAAATACTAATGAAAAAGA+GGG + chr3_3:58844255-58844274 None:intergenic 15.0%
!! ATAAAATACTAATGAAAAAG+AGG + chr3_3:58844256-58844275 None:intergenic 15.0%
!!! CTAACATAGTTTTATAAAAA+GGG + chr3_3:58844674-58844693 None:intergenic 15.0%
!!! TCTAACATAGTTTTATAAAA+AGG + chr3_3:58844675-58844694 None:intergenic 15.0%
!!! AATTTTTTTTTGTGATGTTT+GGG + chr3_3:58845049-58845068 None:intergenic 15.0%
!!! TAATTTTTTTTTGTGATGTT+TGG + chr3_3:58845050-58845069 None:intergenic 15.0%
!! TTTGAAAATTGTAAAAATTG+TGG - chr3_3:58846141-58846160 Msa0461070:five_prime_UTR 15.0%
!! TAAAATACTAATGAAAAAGA+GGG + chr3_3:58844255-58844274 None:intergenic 15.0%
!! ATAAAATACTAATGAAAAAG+AGG + chr3_3:58844256-58844275 None:intergenic 15.0%
!!! CTAACATAGTTTTATAAAAA+GGG + chr3_3:58844674-58844693 None:intergenic 15.0%
!!! TCTAACATAGTTTTATAAAA+AGG + chr3_3:58844675-58844694 None:intergenic 15.0%
!!! AATTTTTTTTTGTGATGTTT+GGG + chr3_3:58845049-58845068 None:intergenic 15.0%
!!! TAATTTTTTTTTGTGATGTT+TGG + chr3_3:58845050-58845069 None:intergenic 15.0%
!! TTTGAAAATTGTAAAAATTG+TGG - chr3_3:58846141-58846160 Msa0461070:five_prime_UTR 15.0%
!! TAAACATGTGATTAATGAAA+TGG + chr3_3:58844406-58844425 None:intergenic 20.0%
!!! AAAGAAGTTAGTGAATATTT+TGG + chr3_3:58844702-58844721 None:intergenic 20.0%
!!! AATTTTAGATTAGAAATGTG+TGG - chr3_3:58844840-58844859 Msa0461070:intron 20.0%
!! TCATTAAACAATAGGTTTAT+GGG + chr3_3:58844949-58844968 None:intergenic 20.0%
!! TTCATTAAACAATAGGTTTA+TGG + chr3_3:58844950-58844969 None:intergenic 20.0%
!!! ATTTTTTTTTGTGATGTTTG+GGG + chr3_3:58845048-58845067 None:intergenic 20.0%
!!! CTTTTCAATTTCTAATGAAT+TGG + chr3_3:58845230-58845249 None:intergenic 20.0%
!! TAAACAATTACACTCTATTT+AGG + chr3_3:58846034-58846053 None:intergenic 20.0%
!! TAAACATGTGATTAATGAAA+TGG + chr3_3:58844406-58844425 None:intergenic 20.0%
!!! AAAGAAGTTAGTGAATATTT+TGG + chr3_3:58844702-58844721 None:intergenic 20.0%
!!! AATTTTAGATTAGAAATGTG+TGG - chr3_3:58844840-58844859 Msa0461070:intron 20.0%
!! TCATTAAACAATAGGTTTAT+GGG + chr3_3:58844949-58844968 None:intergenic 20.0%
!! TTCATTAAACAATAGGTTTA+TGG + chr3_3:58844950-58844969 None:intergenic 20.0%
!!! ATTTTTTTTTGTGATGTTTG+GGG + chr3_3:58845048-58845067 None:intergenic 20.0%
!!! CTTTTCAATTTCTAATGAAT+TGG + chr3_3:58845230-58845249 None:intergenic 20.0%
!! TAAACAATTACACTCTATTT+AGG + chr3_3:58846034-58846053 None:intergenic 20.0%
! AACTCTACTTGTTCTTATTA+AGG - chr3_3:58844105-58844124 Msa0461070:three_prime_UTR 25.0%
!! AACTCTTCTATCAACTTTTA+TGG - chr3_3:58844164-58844183 Msa0461070:three_prime_UTR 25.0%
! AGATAAAACTATGTTAGATG+AGG - chr3_3:58844477-58844496 Msa0461070:CDS 25.0%
! GATAAAACTATGTTAGATGA+GGG - chr3_3:58844478-58844497 Msa0461070:CDS 25.0%
! ATAAAACTATGTTAGATGAG+GGG - chr3_3:58844479-58844498 Msa0461070:CDS 25.0%
! CATTAAACAATAGGTTTATG+GGG + chr3_3:58844948-58844967 None:intergenic 25.0%
!! TTACTTTAAAGGTAAATGCT+AGG - chr3_3:58845157-58845176 Msa0461070:intron 25.0%
!! TACTTTAAAGGTAAATGCTA+GGG - chr3_3:58845158-58845177 Msa0461070:intron 25.0%
!! TTTAACTGTGATTAGTTGAT+GGG - chr3_3:58845369-58845388 Msa0461070:intron 25.0%
!!! CATTTTTCAGATGATTTTGA+AGG - chr3_3:58845459-58845478 Msa0461070:intron 25.0%
! GAAGGATTAAATGAAGAAAA+TGG - chr3_3:58845487-58845506 Msa0461070:intron 25.0%
!!! TTTTGATTTTATGTCTTGCA+TGG - chr3_3:58845983-58846002 Msa0461070:intron 25.0%
! TAGAGTGTAATTGTTTAGTT+TGG - chr3_3:58846037-58846056 Msa0461070:CDS 25.0%
!! AGAGTGTAATTGTTTAGTTT+GGG - chr3_3:58846038-58846057 Msa0461070:CDS 25.0%
! AACTCTACTTGTTCTTATTA+AGG - chr3_3:58844105-58844124 Msa0461070:three_prime_UTR 25.0%
!! AACTCTTCTATCAACTTTTA+TGG - chr3_3:58844164-58844183 Msa0461070:three_prime_UTR 25.0%
! AGATAAAACTATGTTAGATG+AGG - chr3_3:58844477-58844496 Msa0461070:CDS 25.0%
! GATAAAACTATGTTAGATGA+GGG - chr3_3:58844478-58844497 Msa0461070:CDS 25.0%
! ATAAAACTATGTTAGATGAG+GGG - chr3_3:58844479-58844498 Msa0461070:CDS 25.0%
! CATTAAACAATAGGTTTATG+GGG + chr3_3:58844948-58844967 None:intergenic 25.0%
!! TTACTTTAAAGGTAAATGCT+AGG - chr3_3:58845157-58845176 Msa0461070:intron 25.0%
!! TACTTTAAAGGTAAATGCTA+GGG - chr3_3:58845158-58845177 Msa0461070:intron 25.0%
!! TTTAACTGTGATTAGTTGAT+GGG - chr3_3:58845369-58845388 Msa0461070:intron 25.0%
!!! CATTTTTCAGATGATTTTGA+AGG - chr3_3:58845459-58845478 Msa0461070:intron 25.0%
! GAAGGATTAAATGAAGAAAA+TGG - chr3_3:58845487-58845506 Msa0461070:intron 25.0%
!!! TTTTGATTTTATGTCTTGCA+TGG - chr3_3:58845983-58846002 Msa0461070:intron 25.0%
! TAGAGTGTAATTGTTTAGTT+TGG - chr3_3:58846037-58846056 Msa0461070:CDS 25.0%
!! AGAGTGTAATTGTTTAGTTT+GGG - chr3_3:58846038-58846057 Msa0461070:CDS 25.0%
! TATTAGTCTATGCTAATGAG+CGG + chr3_3:58844295-58844314 None:intergenic 30.0%
AATATCTGTTCGAGATTTGT+TGG - chr3_3:58844311-58844330 Msa0461070:CDS 30.0%
GTGATTAATGAAATGGTCAA+AGG + chr3_3:58844399-58844418 None:intergenic 30.0%
! GTTTAACTGTGATTAGTTGA+TGG - chr3_3:58845368-58845387 Msa0461070:intron 30.0%
!! ATGATTTTGAAGGCAATAGA+AGG - chr3_3:58845469-58845488 Msa0461070:intron 30.0%
AAGTACATAGAATCCACATA+CGG - chr3_3:58845532-58845551 Msa0461070:intron 30.0%
AATGTTGTGGATTTCATCTT+TGG + chr3_3:58845931-58845950 None:intergenic 30.0%
AAAGATGAAATCCACAACAT+TGG - chr3_3:58845930-58845949 Msa0461070:intron 30.0%
TAACGCTTAATGATTGATCA+TGG - chr3_3:58845960-58845979 Msa0461070:intron 30.0%
!! GAGTGTAATTGTTTAGTTTG+GGG - chr3_3:58846039-58846058 Msa0461070:CDS 30.0%
! TATTAGTCTATGCTAATGAG+CGG + chr3_3:58844295-58844314 None:intergenic 30.0%
AATATCTGTTCGAGATTTGT+TGG - chr3_3:58844311-58844330 Msa0461070:CDS 30.0%
GTGATTAATGAAATGGTCAA+AGG + chr3_3:58844399-58844418 None:intergenic 30.0%
! GTTTAACTGTGATTAGTTGA+TGG - chr3_3:58845368-58845387 Msa0461070:intron 30.0%
!! ATGATTTTGAAGGCAATAGA+AGG - chr3_3:58845469-58845488 Msa0461070:intron 30.0%
AAGTACATAGAATCCACATA+CGG - chr3_3:58845532-58845551 Msa0461070:intron 30.0%
AATGTTGTGGATTTCATCTT+TGG + chr3_3:58845931-58845950 None:intergenic 30.0%
AAAGATGAAATCCACAACAT+TGG - chr3_3:58845930-58845949 Msa0461070:intron 30.0%
TAACGCTTAATGATTGATCA+TGG - chr3_3:58845960-58845979 Msa0461070:intron 30.0%
!! GAGTGTAATTGTTTAGTTTG+GGG - chr3_3:58846039-58846058 Msa0461070:CDS 30.0%
!!! GTTTTGAAGCTTTACAACCT+CGG + chr3_3:58844147-58844166 None:intergenic 35.0%
! CTATCAACTTTTATGGCTAC+TGG - chr3_3:58844171-58844190 Msa0461070:three_prime_UTR 35.0%
AAATTTACCTCACGGTAAGA+TGG + chr3_3:58844225-58844244 None:intergenic 35.0%
GTTAGCTGAAATTTACCTCA+CGG + chr3_3:58844233-58844252 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr3_3:58844575-58844594 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr3_3:58844574-58844593 Msa0461070:CDS 35.0%
! GTTTTATAAAAAGGGCAACC+CGG + chr3_3:58844666-58844685 None:intergenic 35.0%
AAATGTGTGGAGTTAGAGAA+AGG - chr3_3:58844853-58844872 Msa0461070:intron 35.0%
TACAAACTGAGGTAATCTCA+CGG + chr3_3:58844987-58845006 None:intergenic 35.0%
TGCATTGTTCTTACAAACTG+AGG + chr3_3:58844998-58845017 None:intergenic 35.0%
AACAATGCAGAATACATGCA+AGG - chr3_3:58845009-58845028 Msa0461070:intron 35.0%
!! AGAATGTCTAAAGAGTGTTC+TGG - chr3_3:58845282-58845301 Msa0461070:intron 35.0%
!! GAATGTCTAAAGAGTGTTCT+GGG - chr3_3:58845283-58845302 Msa0461070:intron 35.0%
GTATGTGGATTCTATGTACT+TGG + chr3_3:58845533-58845552 None:intergenic 35.0%
! GAAAAAGACTCTTTAGCCTT+GGG + chr3_3:58845697-58845716 None:intergenic 35.0%
GTTAATTTCTGCCAATGTTG+TGG + chr3_3:58845944-58845963 None:intergenic 35.0%
!!! GTTTTGAAGCTTTACAACCT+CGG + chr3_3:58844147-58844166 None:intergenic 35.0%
! CTATCAACTTTTATGGCTAC+TGG - chr3_3:58844171-58844190 Msa0461070:three_prime_UTR 35.0%
AAATTTACCTCACGGTAAGA+TGG + chr3_3:58844225-58844244 None:intergenic 35.0%
GTTAGCTGAAATTTACCTCA+CGG + chr3_3:58844233-58844252 None:intergenic 35.0%
!!! TTACCCTGTTTTTACACAAG+AGG + chr3_3:58844575-58844594 None:intergenic 35.0%
TCTTGTGTAAAAACAGGGTA+AGG - chr3_3:58844574-58844593 Msa0461070:CDS 35.0%
! GTTTTATAAAAAGGGCAACC+CGG + chr3_3:58844666-58844685 None:intergenic 35.0%
AAATGTGTGGAGTTAGAGAA+AGG - chr3_3:58844853-58844872 Msa0461070:intron 35.0%
TACAAACTGAGGTAATCTCA+CGG + chr3_3:58844987-58845006 None:intergenic 35.0%
TGCATTGTTCTTACAAACTG+AGG + chr3_3:58844998-58845017 None:intergenic 35.0%
AACAATGCAGAATACATGCA+AGG - chr3_3:58845009-58845028 Msa0461070:intron 35.0%
!! AGAATGTCTAAAGAGTGTTC+TGG - chr3_3:58845282-58845301 Msa0461070:intron 35.0%
!! GAATGTCTAAAGAGTGTTCT+GGG - chr3_3:58845283-58845302 Msa0461070:intron 35.0%
GTATGTGGATTCTATGTACT+TGG + chr3_3:58845533-58845552 None:intergenic 35.0%
! GAAAAAGACTCTTTAGCCTT+GGG + chr3_3:58845697-58845716 None:intergenic 35.0%
GTTAATTTCTGCCAATGTTG+TGG + chr3_3:58845944-58845963 None:intergenic 35.0%
! AACTTTTATGGCTACTGGAG+TGG - chr3_3:58844176-58844195 Msa0461070:three_prime_UTR 40.0%
GTTGTTGTCATGTGACTGTA+AGG - chr3_3:58844524-58844543 Msa0461070:CDS 40.0%
ACTGCCTCTTGTGTAAAAAC+AGG - chr3_3:58844568-58844587 Msa0461070:CDS 40.0%
CTGCCTCTTGTGTAAAAACA+GGG - chr3_3:58844569-58844588 Msa0461070:CDS 40.0%
CGTACAATACACCAAATGGT+GGG - chr3_3:58844600-58844619 Msa0461070:CDS 40.0%
ACAAACTGAGGTAATCTCAC+GGG + chr3_3:58844986-58845005 None:intergenic 40.0%
TACATAGAATCCACATACGG+TGG - chr3_3:58845535-58845554 Msa0461070:intron 40.0%
!!! ACAGTGGTGAGTTAGTCTTT+TGG - chr3_3:58845611-58845630 Msa0461070:intron 40.0%
CGAAAAAGACTCTTTAGCCT+TGG + chr3_3:58845698-58845717 None:intergenic 40.0%
GTTGTGGATTTCATCTTTGG+AGG + chr3_3:58845928-58845947 None:intergenic 40.0%
! AACTTTTATGGCTACTGGAG+TGG - chr3_3:58844176-58844195 Msa0461070:three_prime_UTR 40.0%
GTTGTTGTCATGTGACTGTA+AGG - chr3_3:58844524-58844543 Msa0461070:CDS 40.0%
ACTGCCTCTTGTGTAAAAAC+AGG - chr3_3:58844568-58844587 Msa0461070:CDS 40.0%
CTGCCTCTTGTGTAAAAACA+GGG - chr3_3:58844569-58844588 Msa0461070:CDS 40.0%
CGTACAATACACCAAATGGT+GGG - chr3_3:58844600-58844619 Msa0461070:CDS 40.0%
ACAAACTGAGGTAATCTCAC+GGG + chr3_3:58844986-58845005 None:intergenic 40.0%
TACATAGAATCCACATACGG+TGG - chr3_3:58845535-58845554 Msa0461070:intron 40.0%
!!! ACAGTGGTGAGTTAGTCTTT+TGG - chr3_3:58845611-58845630 Msa0461070:intron 40.0%
CGAAAAAGACTCTTTAGCCT+TGG + chr3_3:58845698-58845717 None:intergenic 40.0%
GTTGTGGATTTCATCTTTGG+AGG + chr3_3:58845928-58845947 None:intergenic 40.0%
!!! GTCGTTTTTCTGAAGATCCG+AGG - chr3_3:58844127-58844146 Msa0461070:three_prime_UTR 45.0%
CGGTAAGATGGAAGTGAAAG+AGG + chr3_3:58844213-58844232 None:intergenic 45.0%
TTCACTTCCATCTTACCGTG+AGG - chr3_3:58844215-58844234 Msa0461070:three_prime_UTR 45.0%
TGTTAGATGAGGGGTAACCT+TGG - chr3_3:58844488-58844507 Msa0461070:CDS 45.0%
TCATGTGACTGTAAGGTCAC+AGG - chr3_3:58844531-58844550 Msa0461070:CDS 45.0%
TTACACAAGAGGCAGTTTCC+AGG + chr3_3:58844564-58844583 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr3_3:58844596-58844615 Msa0461070:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - chr3_3:58844599-58844618 Msa0461070:CDS 45.0%
TGCAGAATACATGCAAGGTC+TGG - chr3_3:58845014-58845033 Msa0461070:intron 45.0%
GCAGAATACATGCAAGGTCT+GGG - chr3_3:58845015-58845034 Msa0461070:intron 45.0%
CAGAATACATGCAAGGTCTG+GGG - chr3_3:58845016-58845035 Msa0461070:intron 45.0%
AAAGGTAAATGCTAGGGCAC+TGG - chr3_3:58845164-58845183 Msa0461070:intron 45.0%
ACTTGCACCTTGCAAGAATG+AGG - chr3_3:58845587-58845606 Msa0461070:intron 45.0%
CTTGCACCTTGCAAGAATGA+GGG - chr3_3:58845588-58845607 Msa0461070:intron 45.0%
!! AAAGACTCTTTAGCCTTGGG+TGG + chr3_3:58845694-58845713 None:intergenic 45.0%
!! GCTAAAGAGTCTTTTTCGCC+AGG - chr3_3:58845700-58845719 Msa0461070:intron 45.0%
!!! GTCGTTTTTCTGAAGATCCG+AGG - chr3_3:58844127-58844146 Msa0461070:three_prime_UTR 45.0%
CGGTAAGATGGAAGTGAAAG+AGG + chr3_3:58844213-58844232 None:intergenic 45.0%
TTCACTTCCATCTTACCGTG+AGG - chr3_3:58844215-58844234 Msa0461070:three_prime_UTR 45.0%
TGTTAGATGAGGGGTAACCT+TGG - chr3_3:58844488-58844507 Msa0461070:CDS 45.0%
TCATGTGACTGTAAGGTCAC+AGG - chr3_3:58844531-58844550 Msa0461070:CDS 45.0%
TTACACAAGAGGCAGTTTCC+AGG + chr3_3:58844564-58844583 None:intergenic 45.0%
GCTGCGTACAATACACCAAA+TGG - chr3_3:58844596-58844615 Msa0461070:CDS 45.0%
GCGTACAATACACCAAATGG+TGG - chr3_3:58844599-58844618 Msa0461070:CDS 45.0%
TGCAGAATACATGCAAGGTC+TGG - chr3_3:58845014-58845033 Msa0461070:intron 45.0%
GCAGAATACATGCAAGGTCT+GGG - chr3_3:58845015-58845034 Msa0461070:intron 45.0%
CAGAATACATGCAAGGTCTG+GGG - chr3_3:58845016-58845035 Msa0461070:intron 45.0%
AAAGGTAAATGCTAGGGCAC+TGG - chr3_3:58845164-58845183 Msa0461070:intron 45.0%
ACTTGCACCTTGCAAGAATG+AGG - chr3_3:58845587-58845606 Msa0461070:intron 45.0%
CTTGCACCTTGCAAGAATGA+GGG - chr3_3:58845588-58845607 Msa0461070:intron 45.0%
!! AAAGACTCTTTAGCCTTGGG+TGG + chr3_3:58845694-58845713 None:intergenic 45.0%
!! GCTAAAGAGTCTTTTTCGCC+AGG - chr3_3:58845700-58845719 Msa0461070:intron 45.0%
!!! TAATTAAATATTTTTATTGT+TGG + chr3_3:58844917-58844936 None:intergenic 5.0%
!! AATATTATTAATTAAAGTAA+GGG + chr3_3:58845325-58845344 None:intergenic 5.0%
!! AAATATTATTAATTAAAGTA+AGG + chr3_3:58845326-58845345 None:intergenic 5.0%
!!! TAATTAAATATTTTTATTGT+TGG + chr3_3:58844917-58844936 None:intergenic 5.0%
!! AATATTATTAATTAAAGTAA+GGG + chr3_3:58845325-58845344 None:intergenic 5.0%
!! AAATATTATTAATTAAAGTA+AGG + chr3_3:58845326-58845345 None:intergenic 5.0%
CAACTTTACCAGTTGCGCCA+AGG + chr3_3:58844508-58844527 None:intergenic 50.0%
AAGGTCACAGGTTCAAGTCC+TGG - chr3_3:58844543-58844562 Msa0461070:CDS 50.0%
!! AAATGCTAGGGCACTGGCTA+AGG - chr3_3:58845170-58845189 Msa0461070:intron 50.0%
TTGAGGCAATCCACCGTATG+TGG + chr3_3:58845548-58845567 None:intergenic 50.0%
!! ACATACGGTGGATTGCCTCA+AGG - chr3_3:58845547-58845566 Msa0461070:intron 50.0%
TGGATTGCCTCAAGGACACA+AGG - chr3_3:58845555-58845574 Msa0461070:intron 50.0%
AGTAGTGCCTTGTGTCCTTG+AGG + chr3_3:58845565-58845584 None:intergenic 50.0%
CACTGTCCCTCATTCTTGCA+AGG + chr3_3:58845597-58845616 None:intergenic 50.0%
CTTGCAAGAATGAGGGACAG+TGG - chr3_3:58845595-58845614 Msa0461070:intron 50.0%
ACCCAAATGCTCCACCTAGA+AGG - chr3_3:58845656-58845675 Msa0461070:intron 50.0%
! CCCTTCTAGGTGGAGCATTT+GGG + chr3_3:58845660-58845679 None:intergenic 50.0%
CCCAAATGCTCCACCTAGAA+GGG - chr3_3:58845657-58845676 Msa0461070:intron 50.0%
CCAAATGCTCCACCTAGAAG+GGG - chr3_3:58845658-58845677 Msa0461070:intron 50.0%
CATTTGGATCCTTTGGCGGA+CGG + chr3_3:58845756-58845775 None:intergenic 50.0%
CAAAGGCAATGGTCCGTCAA+AGG + chr3_3:58845866-58845885 None:intergenic 50.0%
! CTTTGACGGACCATTGCCTT+TGG - chr3_3:58845864-58845883 Msa0461070:intron 50.0%
GTGACTCATGTGAGCTCTGT+TGG - chr3_3:58846118-58846137 Msa0461070:five_prime_UTR 50.0%
CAACTTTACCAGTTGCGCCA+AGG + chr3_3:58844508-58844527 None:intergenic 50.0%
AAGGTCACAGGTTCAAGTCC+TGG - chr3_3:58844543-58844562 Msa0461070:CDS 50.0%
!! AAATGCTAGGGCACTGGCTA+AGG - chr3_3:58845170-58845189 Msa0461070:intron 50.0%
TTGAGGCAATCCACCGTATG+TGG + chr3_3:58845548-58845567 None:intergenic 50.0%
!! ACATACGGTGGATTGCCTCA+AGG - chr3_3:58845547-58845566 Msa0461070:intron 50.0%
TGGATTGCCTCAAGGACACA+AGG - chr3_3:58845555-58845574 Msa0461070:intron 50.0%
AGTAGTGCCTTGTGTCCTTG+AGG + chr3_3:58845565-58845584 None:intergenic 50.0%
CACTGTCCCTCATTCTTGCA+AGG + chr3_3:58845597-58845616 None:intergenic 50.0%
CTTGCAAGAATGAGGGACAG+TGG - chr3_3:58845595-58845614 Msa0461070:intron 50.0%
ACCCAAATGCTCCACCTAGA+AGG - chr3_3:58845656-58845675 Msa0461070:intron 50.0%
! CCCTTCTAGGTGGAGCATTT+GGG + chr3_3:58845660-58845679 None:intergenic 50.0%
CCCAAATGCTCCACCTAGAA+GGG - chr3_3:58845657-58845676 Msa0461070:intron 50.0%
CCAAATGCTCCACCTAGAAG+GGG - chr3_3:58845658-58845677 Msa0461070:intron 50.0%
CATTTGGATCCTTTGGCGGA+CGG + chr3_3:58845756-58845775 None:intergenic 50.0%
CAAAGGCAATGGTCCGTCAA+AGG + chr3_3:58845866-58845885 None:intergenic 50.0%
! CTTTGACGGACCATTGCCTT+TGG - chr3_3:58845864-58845883 Msa0461070:intron 50.0%
GTGACTCATGTGAGCTCTGT+TGG - chr3_3:58846118-58846137 Msa0461070:five_prime_UTR 50.0%
! TGGAGCATTTGGGTCACGCT+TGG + chr3_3:58845650-58845669 None:intergenic 55.0%
! CCCCTTCTAGGTGGAGCATT+TGG + chr3_3:58845661-58845680 None:intergenic 55.0%
! TAGCCTTGGGTGGTCTTCCA+CGG + chr3_3:58845684-58845703 None:intergenic 55.0%
AGGCTTGGGTGGTGAGTACA+TGG + chr3_3:58845728-58845747 None:intergenic 55.0%
TGTACTCACCACCCAAGCCT+AGG - chr3_3:58845728-58845747 Msa0461070:intron 55.0%
GTACTCACCACCCAAGCCTA+GGG - chr3_3:58845729-58845748 Msa0461070:intron 55.0%
TACTCACCACCCAAGCCTAG+GGG - chr3_3:58845730-58845749 Msa0461070:intron 55.0%
CGTCCGCCAAAGGATCCAAA+TGG - chr3_3:58845754-58845773 Msa0461070:intron 55.0%
GGGCCATTTGGATCCTTTGG+CGG + chr3_3:58845760-58845779 None:intergenic 55.0%
GGTGGGCCATTTGGATCCTT+TGG + chr3_3:58845763-58845782 None:intergenic 55.0%
AGGATCCAAATGGCCCACCA+AGG - chr3_3:58845764-58845783 Msa0461070:intron 55.0%
!! CACAAGGGAAGGCGTCTGTA+GGG - chr3_3:58845791-58845810 Msa0461070:intron 55.0%
ATCTTCCTTGGCCGACCTCT+AGG + chr3_3:58845826-58845845 None:intergenic 55.0%
GACCATTGCCTTTGGCCGTA+GGG - chr3_3:58845872-58845891 Msa0461070:intron 55.0%
! ATCTTTGGAGGCCTACCCCT+AGG + chr3_3:58845916-58845935 None:intergenic 55.0%
! TGGAGCATTTGGGTCACGCT+TGG + chr3_3:58845650-58845669 None:intergenic 55.0%
! CCCCTTCTAGGTGGAGCATT+TGG + chr3_3:58845661-58845680 None:intergenic 55.0%
! TAGCCTTGGGTGGTCTTCCA+CGG + chr3_3:58845684-58845703 None:intergenic 55.0%
AGGCTTGGGTGGTGAGTACA+TGG + chr3_3:58845728-58845747 None:intergenic 55.0%
TGTACTCACCACCCAAGCCT+AGG - chr3_3:58845728-58845747 Msa0461070:intron 55.0%
GTACTCACCACCCAAGCCTA+GGG - chr3_3:58845729-58845748 Msa0461070:intron 55.0%
TACTCACCACCCAAGCCTAG+GGG - chr3_3:58845730-58845749 Msa0461070:intron 55.0%
CGTCCGCCAAAGGATCCAAA+TGG - chr3_3:58845754-58845773 Msa0461070:intron 55.0%
GGGCCATTTGGATCCTTTGG+CGG + chr3_3:58845760-58845779 None:intergenic 55.0%
GGTGGGCCATTTGGATCCTT+TGG + chr3_3:58845763-58845782 None:intergenic 55.0%
AGGATCCAAATGGCCCACCA+AGG - chr3_3:58845764-58845783 Msa0461070:intron 55.0%
!! CACAAGGGAAGGCGTCTGTA+GGG - chr3_3:58845791-58845810 Msa0461070:intron 55.0%
ATCTTCCTTGGCCGACCTCT+AGG + chr3_3:58845826-58845845 None:intergenic 55.0%
GACCATTGCCTTTGGCCGTA+GGG - chr3_3:58845872-58845891 Msa0461070:intron 55.0%
! ATCTTTGGAGGCCTACCCCT+AGG + chr3_3:58845916-58845935 None:intergenic 55.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr3_3:58844497-58844516 Msa0461070:CDS 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr3_3:58844612-58844631 Msa0461070:CDS 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr3_3:58844639-58844658 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr3_3:58844640-58844659 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr3_3:58844644-58844663 Msa0461070:CDS 60.0%
GGTGGTGAGTACATGGCTCC+TGG + chr3_3:58845721-58845740 None:intergenic 60.0%
TCCCTTGTGGAGGCCTTGGT+GGG + chr3_3:58845780-58845799 None:intergenic 60.0%
TTCCCTTGTGGAGGCCTTGG+TGG + chr3_3:58845781-58845800 None:intergenic 60.0%
ACCAAGGCCTCCACAAGGGA+AGG - chr3_3:58845780-58845799 Msa0461070:intron 60.0%
ACAGACGCCTTCCCTTGTGG+AGG + chr3_3:58845790-58845809 None:intergenic 60.0%
CCTACAGACGCCTTCCCTTG+TGG + chr3_3:58845793-58845812 None:intergenic 60.0%
!! CCACAAGGGAAGGCGTCTGT+AGG - chr3_3:58845790-58845809 Msa0461070:intron 60.0%
AGGCGTCTGTAGGGACTGGA+AGG - chr3_3:58845800-58845819 Msa0461070:intron 60.0%
GTAGGGACTGGAAGGCCTAG+AGG - chr3_3:58845808-58845827 Msa0461070:intron 60.0%
GGACTGGAAGGCCTAGAGGT+CGG - chr3_3:58845812-58845831 Msa0461070:intron 60.0%
GTCGGCCAAGGAAGATGTCC+CGG - chr3_3:58845830-58845849 Msa0461070:intron 60.0%
GTTGGCCGGGACATCTTCCT+TGG + chr3_3:58845838-58845857 None:intergenic 60.0%
AGGAAGATGTCCCGGCCAAC+TGG - chr3_3:58845838-58845857 Msa0461070:intron 60.0%
GTCAAAGGCTCCAGTTGGCC+GGG + chr3_3:58845851-58845870 None:intergenic 60.0%
CGTCAAAGGCTCCAGTTGGC+CGG + chr3_3:58845852-58845871 None:intergenic 60.0%
CGGCCAACTGGAGCCTTTGA+CGG - chr3_3:58845850-58845869 Msa0461070:intron 60.0%
GGTCCGTCAAAGGCTCCAGT+TGG + chr3_3:58845856-58845875 None:intergenic 60.0%
GGACCATTGCCTTTGGCCGT+AGG - chr3_3:58845871-58845890 Msa0461070:intron 60.0%
GTCCCTACGGCCAAAGGCAA+TGG + chr3_3:58845877-58845896 None:intergenic 60.0%
TTGCCTTTGGCCGTAGGGAC+CGG - chr3_3:58845877-58845896 Msa0461070:intron 60.0%
AGGGGTAACCTTGGCGCAAC+TGG - chr3_3:58844497-58844516 Msa0461070:CDS 60.0%
! CAAATGGTGGGACCCCTTCC+CGG - chr3_3:58844612-58844631 Msa0461070:CDS 60.0%
CTGAAGCTCCCGCATACGCA+GGG + chr3_3:58844639-58844658 None:intergenic 60.0%
ACTGAAGCTCCCGCATACGC+AGG + chr3_3:58844640-58844659 None:intergenic 60.0%
ATGCGGGAGCTTCAGTGCAC+CGG - chr3_3:58844644-58844663 Msa0461070:CDS 60.0%
GGTGGTGAGTACATGGCTCC+TGG + chr3_3:58845721-58845740 None:intergenic 60.0%
TCCCTTGTGGAGGCCTTGGT+GGG + chr3_3:58845780-58845799 None:intergenic 60.0%
TTCCCTTGTGGAGGCCTTGG+TGG + chr3_3:58845781-58845800 None:intergenic 60.0%
ACCAAGGCCTCCACAAGGGA+AGG - chr3_3:58845780-58845799 Msa0461070:intron 60.0%
ACAGACGCCTTCCCTTGTGG+AGG + chr3_3:58845790-58845809 None:intergenic 60.0%
CCTACAGACGCCTTCCCTTG+TGG + chr3_3:58845793-58845812 None:intergenic 60.0%
!! CCACAAGGGAAGGCGTCTGT+AGG - chr3_3:58845790-58845809 Msa0461070:intron 60.0%
AGGCGTCTGTAGGGACTGGA+AGG - chr3_3:58845800-58845819 Msa0461070:intron 60.0%
GTAGGGACTGGAAGGCCTAG+AGG - chr3_3:58845808-58845827 Msa0461070:intron 60.0%
GGACTGGAAGGCCTAGAGGT+CGG - chr3_3:58845812-58845831 Msa0461070:intron 60.0%
GTCGGCCAAGGAAGATGTCC+CGG - chr3_3:58845830-58845849 Msa0461070:intron 60.0%
GTTGGCCGGGACATCTTCCT+TGG + chr3_3:58845838-58845857 None:intergenic 60.0%
AGGAAGATGTCCCGGCCAAC+TGG - chr3_3:58845838-58845857 Msa0461070:intron 60.0%
GTCAAAGGCTCCAGTTGGCC+GGG + chr3_3:58845851-58845870 None:intergenic 60.0%
CGTCAAAGGCTCCAGTTGGC+CGG + chr3_3:58845852-58845871 None:intergenic 60.0%
CGGCCAACTGGAGCCTTTGA+CGG - chr3_3:58845850-58845869 Msa0461070:intron 60.0%
GGTCCGTCAAAGGCTCCAGT+TGG + chr3_3:58845856-58845875 None:intergenic 60.0%
GGACCATTGCCTTTGGCCGT+AGG - chr3_3:58845871-58845890 Msa0461070:intron 60.0%
GTCCCTACGGCCAAAGGCAA+TGG + chr3_3:58845877-58845896 None:intergenic 60.0%
TTGCCTTTGGCCGTAGGGAC+CGG - chr3_3:58845877-58845896 Msa0461070:intron 60.0%
CGGGAAGGGGTCCCACCATT+TGG + chr3_3:58844614-58844633 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr3_3:58844627-58844646 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr3_3:58844628-58844647 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr3_3:58844627-58844646 Msa0461070:CDS 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr3_3:58844628-58844647 Msa0461070:CDS 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr3_3:58844645-58844664 Msa0461070:CDS 65.0%
CTTCCACGGCCCCTTCTAGG+TGG + chr3_3:58845670-58845689 None:intergenic 65.0%
GGTCTTCCACGGCCCCTTCT+AGG + chr3_3:58845673-58845692 None:intergenic 65.0%
! GGAGGCCTTGGTGGGCCATT+TGG + chr3_3:58845772-58845791 None:intergenic 65.0%
GCCCACCAAGGCCTCCACAA+GGG - chr3_3:58845776-58845795 Msa0461070:intron 65.0%
GCCTTCCCTTGTGGAGGCCT+TGG + chr3_3:58845784-58845803 None:intergenic 65.0%
!! GGGAAGGCGTCTGTAGGGAC+TGG - chr3_3:58845796-58845815 Msa0461070:intron 65.0%
GAAGGCCTAGAGGTCGGCCA+AGG - chr3_3:58845818-58845837 Msa0461070:intron 65.0%
CCCACTACCTCCGGTCCCTA+CGG + chr3_3:58845890-58845909 None:intergenic 65.0%
CCGTAGGGACCGGAGGTAGT+GGG - chr3_3:58845887-58845906 Msa0461070:intron 65.0%
!! TAGGGACCGGAGGTAGTGGG+AGG - chr3_3:58845890-58845909 Msa0461070:intron 65.0%
CCTAGGCCTCCCACTACCTC+CGG + chr3_3:58845899-58845918 None:intergenic 65.0%
!! CGGAGGTAGTGGGAGGCCTA+GGG - chr3_3:58845897-58845916 Msa0461070:intron 65.0%
!! GGAGGTAGTGGGAGGCCTAG+GGG - chr3_3:58845898-58845917 Msa0461070:intron 65.0%
! GTAGTGGGAGGCCTAGGGGT+AGG - chr3_3:58845902-58845921 Msa0461070:intron 65.0%
CGGGAAGGGGTCCCACCATT+TGG + chr3_3:58844614-58844633 None:intergenic 65.0%
CATACGCAGGGTCCGGGAAG+GGG + chr3_3:58844627-58844646 None:intergenic 65.0%
GCATACGCAGGGTCCGGGAA+GGG + chr3_3:58844628-58844647 None:intergenic 65.0%
CTTCCCGGACCCTGCGTATG+CGG - chr3_3:58844627-58844646 Msa0461070:CDS 65.0%
TTCCCGGACCCTGCGTATGC+GGG - chr3_3:58844628-58844647 Msa0461070:CDS 65.0%
TGCGGGAGCTTCAGTGCACC+GGG - chr3_3:58844645-58844664 Msa0461070:CDS 65.0%
CTTCCACGGCCCCTTCTAGG+TGG + chr3_3:58845670-58845689 None:intergenic 65.0%
GGTCTTCCACGGCCCCTTCT+AGG + chr3_3:58845673-58845692 None:intergenic 65.0%
! GGAGGCCTTGGTGGGCCATT+TGG + chr3_3:58845772-58845791 None:intergenic 65.0%
GCCCACCAAGGCCTCCACAA+GGG - chr3_3:58845776-58845795 Msa0461070:intron 65.0%
GCCTTCCCTTGTGGAGGCCT+TGG + chr3_3:58845784-58845803 None:intergenic 65.0%
!! GGGAAGGCGTCTGTAGGGAC+TGG - chr3_3:58845796-58845815 Msa0461070:intron 65.0%
GAAGGCCTAGAGGTCGGCCA+AGG - chr3_3:58845818-58845837 Msa0461070:intron 65.0%
CCCACTACCTCCGGTCCCTA+CGG + chr3_3:58845890-58845909 None:intergenic 65.0%
CCGTAGGGACCGGAGGTAGT+GGG - chr3_3:58845887-58845906 Msa0461070:intron 65.0%
!! TAGGGACCGGAGGTAGTGGG+AGG - chr3_3:58845890-58845909 Msa0461070:intron 65.0%
CCTAGGCCTCCCACTACCTC+CGG + chr3_3:58845899-58845918 None:intergenic 65.0%
!! CGGAGGTAGTGGGAGGCCTA+GGG - chr3_3:58845897-58845916 Msa0461070:intron 65.0%
!! GGAGGTAGTGGGAGGCCTAG+GGG - chr3_3:58845898-58845917 Msa0461070:intron 65.0%
! GTAGTGGGAGGCCTAGGGGT+AGG - chr3_3:58845902-58845921 Msa0461070:intron 65.0%
CGCATACGCAGGGTCCGGGA+AGG + chr3_3:58844629-58844648 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr3_3:58844633-58844652 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr3_3:58844634-58844653 None:intergenic 70.0%
GCTCCACCTAGAAGGGGCCG+TGG - chr3_3:58845664-58845683 Msa0461070:intron 70.0%
GGGCCGTGGAAGACCACCCA+AGG - chr3_3:58845678-58845697 Msa0461070:intron 70.0%
! TCCTTTGGCGGACGGCCCCT+AGG + chr3_3:58845748-58845767 None:intergenic 70.0%
GGCCCACCAAGGCCTCCACA+AGG - chr3_3:58845775-58845794 Msa0461070:intron 70.0%
CCTCCGGTCCCTACGGCCAA+AGG + chr3_3:58845883-58845902 None:intergenic 70.0%
CCTTTGGCCGTAGGGACCGG+AGG - chr3_3:58845880-58845899 Msa0461070:intron 70.0%
GCCGTAGGGACCGGAGGTAG+TGG - chr3_3:58845886-58845905 Msa0461070:intron 70.0%
!! CCGGAGGTAGTGGGAGGCCT+AGG - chr3_3:58845896-58845915 Msa0461070:intron 70.0%
CGCATACGCAGGGTCCGGGA+AGG + chr3_3:58844629-58844648 None:intergenic 70.0%
CTCCCGCATACGCAGGGTCC+GGG + chr3_3:58844633-58844652 None:intergenic 70.0%
GCTCCCGCATACGCAGGGTC+CGG + chr3_3:58844634-58844653 None:intergenic 70.0%
GCTCCACCTAGAAGGGGCCG+TGG - chr3_3:58845664-58845683 Msa0461070:intron 70.0%
GGGCCGTGGAAGACCACCCA+AGG - chr3_3:58845678-58845697 Msa0461070:intron 70.0%
! TCCTTTGGCGGACGGCCCCT+AGG + chr3_3:58845748-58845767 None:intergenic 70.0%
GGCCCACCAAGGCCTCCACA+AGG - chr3_3:58845775-58845794 Msa0461070:intron 70.0%
CCTCCGGTCCCTACGGCCAA+AGG + chr3_3:58845883-58845902 None:intergenic 70.0%
CCTTTGGCCGTAGGGACCGG+AGG - chr3_3:58845880-58845899 Msa0461070:intron 70.0%
GCCGTAGGGACCGGAGGTAG+TGG - chr3_3:58845886-58845905 Msa0461070:intron 70.0%
!! CCGGAGGTAGTGGGAGGCCT+AGG - chr3_3:58845896-58845915 Msa0461070:intron 70.0%
GGACGGCCCCTAGGCTTGGG+TGG + chr3_3:58845739-58845758 None:intergenic 75.0%
GGCGGACGGCCCCTAGGCTT+GGG + chr3_3:58845742-58845761 None:intergenic 75.0%
! TGGCGGACGGCCCCTAGGCT+TGG + chr3_3:58845743-58845762 None:intergenic 75.0%
GCCTAGGGGCCGTCCGCCAA+AGG - chr3_3:58845744-58845763 Msa0461070:intron 75.0%
GGACGGCCCCTAGGCTTGGG+TGG + chr3_3:58845739-58845758 None:intergenic 75.0%
GGCGGACGGCCCCTAGGCTT+GGG + chr3_3:58845742-58845761 None:intergenic 75.0%
! TGGCGGACGGCCCCTAGGCT+TGG + chr3_3:58845743-58845762 None:intergenic 75.0%
GCCTAGGGGCCGTCCGCCAA+AGG - chr3_3:58845744-58845763 Msa0461070:intron 75.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 58844078 58846191 58844078 ID=Msa0461070;Name=Msa0461070
chr3_3 mRNA 58844078 58846191 58844078 ID=Msa0461070-mRNA-1;Parent=Msa0461070;Name=Msa0461070-mRNA-1;_AED=0.02;_eAED=0.02;_QI=105|1|1|1|1|1|2|222|184
chr3_3 exon 58844078 58844800 58844078 ID=Msa0461070-mRNA-1:exon:12261;Parent=Msa0461070-mRNA-1
chr3_3 exon 58846033 58846191 58846033 ID=Msa0461070-mRNA-1:exon:12260;Parent=Msa0461070-mRNA-1
chr3_3 five_prime_UTR 58846087 58846191 58846087 ID=Msa0461070-mRNA-1:five_prime_utr;Parent=Msa0461070-mRNA-1
chr3_3 CDS 58846033 58846086 58846033 ID=Msa0461070-mRNA-1:cds;Parent=Msa0461070-mRNA-1
chr3_3 CDS 58844300 58844800 58844300 ID=Msa0461070-mRNA-1:cds;Parent=Msa0461070-mRNA-1
chr3_3 three_prime_UTR 58844078 58844299 58844078 ID=Msa0461070-mRNA-1:three_prime_utr;Parent=Msa0461070-mRNA-1
Gene Sequence

>Msa0461070

ATGGCTACTGGAGTGGTTATTAATAAACCTCTTTCACTTCCATCTTACCGTGAGATGATTTTGAAGGCAATAGAAGGATTAAATGAAGAAAATGGTTCAAATAAATCATCAATTTCCAAGTACATAGAATCCACATACGGTGGATTGCCTCAAGGACACAAGGCACTACTCAACTTGCACCTTGCAAGAATGAGGGACAGTGGTGAGTTAGTCTTTTGGAAAAACAACTACACCAAGCGTGACCCAAATGCTCCACCTAGAAGGGGCCGTGGAAGACCACCCAAGGCTAAAGAGTCTTTTTCGCCAGGAGCCATGTACTCACCACCCAAGCCTAGGGGCCGTCCGCCAAAGGATCCAAATGGCCCACCAAGGCCTCCACAAGGGAAGGCGTCTGTAGGGACTGGAAGGCCTAGAGGTCGGCCAAGGAAGATGTCCCGGCCAACTGGAGCCTTTGACGGACCATTGCCTTTGGCCGTAGGGACCGGAGGTAGTGGGAGGCCTAGGGGTAGGCCTCCAAAGATGAAATCCACAACATTGGCAGAAATTAACGCTTAA
Protein sequence

>Msa0461070

MATGVVINKPLSLPSYREMILKAIEGLNEENGSNKSSISKYIESTYGGLPQGHKALLNLHLARMRDSGELVFWKNNYTKRDPNAPPRRGRGRPPKAKESFSPGAMYSPPKPRGRPPKDPNGPPRPPQGKASVGTGRPRGRPRKMSRPTGAFDGPLPLAVGTGGSGRPRGRPPKMKSTTLAEINA*