AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0000050


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000050 MtrunA17_Chr2g0298801 96.234 1009 28 4 1 999 1 1009 0.0 1998
Msa0000050 MtrunA17_Chr4g0071701 51.334 637 213 21 397 999 247 820 1.24e-174 530
Msa0000050 MtrunA17_Chr4g0071701 62.097 248 54 8 1 212 1 244 3.25e-67 241
Msa0000050 MtrunA17_Chr4g0073021 30.342 1081 546 43 1 957 1 998 2.67e-108 360
Msa0000050 MtrunA17_Chr1g0197121 40.417 527 253 17 1 500 1 493 3.05e-103 342
Msa0000050 MtrunA17_Chr1g0177421 40.607 527 239 17 1 500 1 480 1.74e-100 334
Msa0000050 MtrunA17_Chr5g0430201 30.329 577 297 26 1 530 1 519 2.17e-35 145
Msa0000050 MtrunA17_Chr3g0105051 30.505 554 281 23 1 498 1 506 2.41e-35 145
Msa0000050 MtrunA17_Chr3g0113631 32.854 417 219 14 1 397 1 376 1.13e-33 140
Msa0000050 MtrunA17_Chr4g0061371 30.078 256 144 9 26 280 20 241 1.73e-17 88.2
Msa0000050 MtrunA17_Chr7g0225161 29.388 245 138 8 26 269 20 230 6.50e-16 82.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0000050 AT4G29920.2 41.950 1087 466 40 1 993 1 1016 0.0 649
Msa0000050 AT4G29920.1 41.766 1087 465 40 1 993 1 1013 0.0 642
Msa0000050 AT5G57130.1 41.367 1112 451 48 1 996 1 1027 0.0 618
Msa0000050 AT3G52490.1 40.619 517 236 14 1 496 1 467 2.04e-104 345
Msa0000050 AT5G57710.1 33.293 829 409 31 1 751 1 763 8.99e-98 331
Msa0000050 AT4G30350.1 38.148 540 256 17 1 498 1 504 2.54e-79 278
Msa0000050 AT2G29970.1 26.540 1055 582 46 1 955 1 962 3.00e-50 193
Msa0000050 AT1G07200.2 26.950 872 448 36 1 772 1 783 1.25e-42 169
Msa0000050 AT2G40130.1 31.655 417 232 16 1 397 1 384 1.29e-40 162
Msa0000050 AT2G40130.2 31.655 417 232 16 1 397 1 384 1.48e-40 162
Msa0000050 AT1G74310.1 26.953 256 152 9 26 280 20 241 7.09e-15 80.1
Msa0000050 AT1G74310.2 26.953 256 152 9 26 280 20 241 9.90e-15 79.3

Find 155 sgRNAs with CRISPR-Local

Find 245 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAATTGTTAACTACTTAA+TGG 0.116030 1_1:+702276 Msa0000050:CDS
ATAATTCATCATACCCTTAT+TGG 0.138198 1_1:+700833 Msa0000050:CDS
AAAATGGGATAGTGGGTTTA+TGG 0.183846 1_1:+702231 Msa0000050:CDS
CTTGTCAAATCACTTGAAAT+TGG 0.210696 1_1:-701878 None:intergenic
CTACCTTGGTTTGGCCAATA+AGG 0.218068 1_1:-700847 None:intergenic
AGCACATTCCTTTGATGATT+TGG 0.220493 1_1:-701241 None:intergenic
CAATGAAAAGTTTGTTGTTT+TGG 0.224683 1_1:+701430 Msa0000050:CDS
AACCATTTCTTGAGTTCTTA+TGG 0.228156 1_1:+698422 Msa0000050:CDS
GATATTGAACTTGGTGTATC+TGG 0.233918 1_1:-700880 None:intergenic
TTCTTGAGTTCTTATGGTTA+TGG 0.246625 1_1:+698428 Msa0000050:CDS
CCATTAAGTAGTTAACAATT+TGG 0.247388 1_1:-702276 None:intergenic
TAAGGGTATGATGAATTATA+AGG 0.279485 1_1:-700829 None:intergenic
ATTGCAAAGTTTGGAACTTT+AGG 0.282514 1_1:+701512 Msa0000050:CDS
ACAAGTTTAGAGAGGGTTAA+TGG 0.285676 1_1:+702154 Msa0000050:CDS
AGAAGAATCTGTTGCCTTCA+TGG 0.287597 1_1:+700228 Msa0000050:CDS
CTTGGAGTTGGATTCTCTTA+AGG 0.288171 1_1:+701035 Msa0000050:CDS
CCTGTTCCATCTGGTGGACT+TGG 0.302111 1_1:+699034 Msa0000050:CDS
TATAGTTTATACACTTTGTT+GGG 0.306813 1_1:+702192 Msa0000050:CDS
AAAATCTTCTGAGTCTAATA+AGG 0.315204 1_1:+698505 Msa0000050:CDS
GATTATGTTGTGGAAGAAAT+AGG 0.322451 1_1:+698881 Msa0000050:CDS
GTCATTTCCTTGTTCTTAGC+TGG 0.323821 1_1:-701977 None:intergenic
TCATCAAAATCACCTTGTTT+AGG 0.334064 1_1:+701671 Msa0000050:CDS
TTGGAGTTGGATTCTCTTAA+GGG 0.334465 1_1:+701036 Msa0000050:CDS
GGAACAAGAATGGTAAGATT+TGG 0.338899 1_1:+698924 Msa0000050:CDS
GTTAGTGATTATGTTGCATT+AGG 0.341264 1_1:+698776 Msa0000050:CDS
ATGTTTGAGAAATGGCTAAA+AGG 0.352149 1_1:+702121 Msa0000050:CDS
GATAAGGTGATAGAGGAAAT+TGG 0.356476 1_1:+702070 Msa0000050:CDS
CTAACAACATGTTTGAGAAA+TGG 0.359340 1_1:+702113 Msa0000050:CDS
AGTAGAGTTATGAGAGAAGC+TGG 0.362568 1_1:+698308 Msa0000050:CDS
AAATGGGATAGTGGGTTTAT+GGG 0.369377 1_1:+702232 Msa0000050:CDS
GGCAACAGATTCTTCTGGTC+TGG 0.371234 1_1:-700221 None:intergenic
TACCTTGGTTTGGCCAATAA+GGG 0.372431 1_1:-700846 None:intergenic
TTGGTTGAAAATGCTGATTT+TGG 0.372782 1_1:+701449 Msa0000050:CDS
GAATTTGAGATTGCAAAGTT+TGG 0.378824 1_1:+701503 Msa0000050:CDS
GTTTGAGCTATAAGCTGGTT+TGG 0.382997 1_1:-700920 None:intergenic
CAAGCTGTTCCTGTTCCATC+TGG 0.386300 1_1:+699025 Msa0000050:CDS
GCAATTGCAGAATCAGTGTT+TGG 0.389107 1_1:+701317 Msa0000050:intron
ACTCCAAGGTTGTTGTTACT+TGG 0.405028 1_1:-701020 None:intergenic
CGCGACGGAATCGAGGTATA+AGG 0.415499 1_1:-700942 None:intergenic
GGAAAGTTGTTTGGTGAAGA+AGG 0.427180 1_1:+698902 Msa0000050:CDS
TCATATATATAAAGTGTTGC+AGG 0.428362 1_1:+701161 Msa0000050:CDS
GTGGTAAAGAGGATAGAAAA+TGG 0.429390 1_1:+702215 Msa0000050:CDS
CATCAAAGGAATGTGCTACT+TGG 0.430549 1_1:+701247 Msa0000050:CDS
CACCATTGATTCTCAAAAGT+TGG 0.432170 1_1:-698998 None:intergenic
TAGTTCAATAGCAGAAGCTT+TGG 0.437063 1_1:+701212 Msa0000050:CDS
TCTTTAACTGAAGGACTAGT+TGG 0.442649 1_1:+698602 Msa0000050:CDS
AACCATAAGAACTCAAGAAA+TGG 0.445877 1_1:-698424 None:intergenic
TGGAGATTTGAAGTGGATAG+TGG 0.446714 1_1:+698820 Msa0000050:CDS
GAAGGATTCAGTGATGAAGT+TGG 0.452059 1_1:+701589 Msa0000050:CDS
GAGGATAGAAAATGGGATAG+TGG 0.454439 1_1:+702223 Msa0000050:CDS
GTATAGTTTATACACTTTGT+TGG 0.454781 1_1:+702191 Msa0000050:CDS
CAAATTCTCAATTGAGTCTA+GGG 0.457600 1_1:-701936 None:intergenic
GTTGGATTCTCTTAAGGGTA+TGG 0.458957 1_1:+701041 Msa0000050:CDS
AACAGAAGGGTCATCAAGAA+TGG 0.461745 1_1:-698285 None:intergenic
GTGATAGAGGAAATTGGTGT+AGG 0.463249 1_1:+702076 Msa0000050:CDS
TGTACAAGATAAGGTGATAG+AGG 0.466717 1_1:+702063 Msa0000050:CDS
AAGATACTACTACCTTGGTT+TGG 0.466919 1_1:-700856 None:intergenic
ATTGACAATACTGCCACCAT+TGG 0.472037 1_1:-701555 None:intergenic
AAAATTTAGTGTACAAGATA+AGG 0.472610 1_1:+702054 Msa0000050:CDS
ACAAATTCTCAATTGAGTCT+AGG 0.473106 1_1:-701937 None:intergenic
GATGGTGATAACTCAAAAGT+TGG 0.473844 1_1:-701641 None:intergenic
TTTGAGGTTGTTTGTTCTGG+TGG 0.473926 1_1:-700765 None:intergenic
GTGGTTGCTGCTGTTGCTGT+TGG 0.474742 1_1:-698223 None:intergenic
TCAAAACCCATCTCCTATGC+TGG 0.480572 1_1:+700103 Msa0000050:CDS
CTGGCAAGATACTACTACCT+TGG 0.481842 1_1:-700861 None:intergenic
AAGGGTATGATGAATTATAA+GGG 0.483177 1_1:-700828 None:intergenic
ATCATTGAAGCTGAACTCAA+TGG 0.484131 1_1:-700980 None:intergenic
AAAGGTGAAGTAGTAGTAGT+TGG 0.486118 1_1:-698104 None:intergenic
ATAAGGTTTGAGCTATAAGC+TGG 0.487817 1_1:-700925 None:intergenic
ATGAAGGCAACAGATTCTTC+TGG 0.489093 1_1:-700226 None:intergenic
GCTGTTCCTGTTCCATCTGG+TGG 0.490790 1_1:+699028 Msa0000050:CDS
AACTATGATTGTTGCTCCAA+TGG 0.491661 1_1:-700789 None:intergenic
CCAAGGATTGAAGAAAATGA+AGG 0.493746 1_1:+701740 Msa0000050:CDS
GAGCTCAAGCTCATCAAAGA+AGG 0.494543 1_1:+698183 Msa0000050:CDS
GTTTGAGTCTTCATTCATCA+AGG 0.497632 1_1:+699056 Msa0000050:CDS
AGGATAGAAAATGGGATAGT+GGG 0.497966 1_1:+702224 Msa0000050:CDS
GATTTGACAAGAGAAACATT+AGG 0.500539 1_1:+701890 Msa0000050:CDS
TTGCAAGGAAATGATTCTGT+TGG 0.502666 1_1:+701276 Msa0000050:CDS
ATGTTATAAGAGTGTTGAAA+AGG 0.504959 1_1:+698750 Msa0000050:CDS
GAAAGTTGTTTGGTGAAGAA+GGG 0.506532 1_1:+698903 Msa0000050:CDS
TCAACTTTAACACTCAAAAG+TGG 0.507140 1_1:-698242 None:intergenic
ATAAGGGTAGATCTTTGCAT+TGG 0.508400 1_1:-700812 None:intergenic
CCAAGTCCACCAGATGGAAC+AGG 0.510866 1_1:-699034 None:intergenic
TCAATCTTGAAGCACTCTCT+AGG 0.512470 1_1:+697906 Msa0000050:CDS
GGTTGATTCCAAATCATCAA+AGG 0.514321 1_1:+701233 Msa0000050:CDS
TGGTAAAGAGGATAGAAAAT+GGG 0.517397 1_1:+702216 Msa0000050:CDS
AGTAACAACAACCTTGGAGT+TGG 0.517705 1_1:+701023 Msa0000050:CDS
TTGATTCCAGCATAGGAGAT+GGG 0.522179 1_1:-700109 None:intergenic
ACTTTGTTGGGGTGGTAAAG+AGG 0.524368 1_1:+702204 Msa0000050:CDS
GAGGAAATTGGTGTAGGGTG+TGG 0.525237 1_1:+702082 Msa0000050:CDS
AGAAGATGAAGACTATGATG+AGG 0.527194 1_1:+701844 Msa0000050:CDS
GATACAGTTTCTTTAACTGA+AGG 0.527453 1_1:+698593 Msa0000050:CDS
TTTGATTCCAGCATAGGAGA+TGG 0.528413 1_1:-700110 None:intergenic
GTTACATGAGGTGTCAAATG+AGG 0.528631 1_1:+698972 Msa0000050:CDS
TGGATAGTGGATGATAATGA+TGG 0.530923 1_1:+698833 Msa0000050:CDS
TATAAGAGTGTTGAAAAGGA+AGG 0.531869 1_1:+698754 Msa0000050:CDS
GCATTTCTTAAAGAAGAAGA+TGG 0.533196 1_1:-697996 None:intergenic
GAAGATGAAGACTATGATGA+GGG 0.534488 1_1:+701845 Msa0000050:CDS
GAAGAAATAGGAAAGTTGTT+TGG 0.534540 1_1:+698893 Msa0000050:CDS
CTTGGAAATTCAACATTCAG+TGG 0.534821 1_1:+701096 Msa0000050:CDS
GACAAAGATGTTTATGTCAA+GGG 0.535057 1_1:+701997 Msa0000050:CDS
GTTTATACACTTTGTTGGGG+TGG 0.536531 1_1:+702196 Msa0000050:CDS
GTTTAGAGAGGGTTAATGGT+GGG 0.538900 1_1:+702158 Msa0000050:CDS
TGACAAAGATGTTTATGTCA+AGG 0.539341 1_1:+701996 Msa0000050:CDS
GATTATGTTGCATTAGGTGT+TGG 0.539481 1_1:+698782 Msa0000050:CDS
GGTGAAGAAGGGAACAAGAA+TGG 0.542309 1_1:+698914 Msa0000050:CDS
AGCTCAAGCTCATCAAAGAA+GGG 0.544619 1_1:+698184 Msa0000050:CDS
CTCATAACTCTACTAACAGA+AGG 0.547154 1_1:-698299 None:intergenic
ACAAACAACCTCAAAACCAT+TGG 0.547893 1_1:+700773 Msa0000050:CDS
TAGCAAATTGTAATGCGCTC+AGG 0.548048 1_1:+697843 None:intergenic
ATAATGAAAAGATTTGAAAG+AGG 0.551174 1_1:+698629 Msa0000050:CDS
GTAAAGACAACTCTTGCACT+TGG 0.555155 1_1:+701078 Msa0000050:CDS
TCAACAAAAGATATTGAACT+TGG 0.555816 1_1:-700889 None:intergenic
GATTCTCTTAAGGGTATGGA+AGG 0.560727 1_1:+701045 Msa0000050:CDS
AAACCAAGTAACAACAACCT+TGG 0.563498 1_1:+701017 Msa0000050:CDS
TTAGAGAGGGTTAATGGTGG+GGG 0.564593 1_1:+702160 Msa0000050:CDS
CTAACTGTTTCACATTGCCA+TGG 0.568665 1_1:-701192 None:intergenic
TGATAGAGGAAATTGGTGTA+GGG 0.570147 1_1:+702077 Msa0000050:CDS
CTTCAAGATTGAAGCAGCCT+CGG 0.571682 1_1:-697895 None:intergenic
CAAGGATTGAAGAAAATGAA+GGG 0.573650 1_1:+701741 Msa0000050:CDS
AGTGTAGCAGCAACGTGAAG+AGG 0.575327 1_1:-697963 None:intergenic
TTTAGAGAGGGTTAATGGTG+GGG 0.579670 1_1:+702159 Msa0000050:CDS
TGTCAATGAAGATCAGAAGA+AGG 0.579932 1_1:+701571 Msa0000050:CDS
TGTTGTCCGCGACGGAATCG+AGG 0.580825 1_1:-700949 None:intergenic
AAAATATTCATATTGTCCAA+TGG 0.583934 1_1:+701539 Msa0000050:CDS
TCTATGTTGGAGATTTGAAG+TGG 0.587362 1_1:+698813 Msa0000050:CDS
TGAACTTGACTTGTTTAGCA+AGG 0.587561 1_1:+701709 Msa0000050:CDS
ATGAGTGCATTAGAAAGAGA+AGG 0.588534 1_1:-698146 None:intergenic
ATAGTTTATACACTTTGTTG+GGG 0.593962 1_1:+702193 Msa0000050:CDS
GGTAAAAGAGTCATTTGAGG+AGG 0.594837 1_1:+702018 Msa0000050:CDS
TCAAGAGCTCTACATTGAAG+AGG 0.598089 1_1:-698050 None:intergenic
CTATGAGACTGAAGCCATGA+AGG 0.600566 1_1:-700242 None:intergenic
ACATGCTGTGGTTGAAGCAA+AGG 0.603439 1_1:-698122 None:intergenic
TTACATGAGGTGTCAAATGA+GGG 0.606608 1_1:+698973 Msa0000050:CDS
AGAGATTGTTGATTATGTTG+TGG 0.609416 1_1:+698871 Msa0000050:CDS
AGTTTAGAGAGGGTTAATGG+TGG 0.613323 1_1:+702157 Msa0000050:CDS
CTAGGCTTAGCACGTAGAAG+AGG 0.615440 1_1:+697924 Msa0000050:CDS
CTCAAACCAAGTCCACCAGA+TGG 0.615673 1_1:-699040 None:intergenic
GAAAGAGAAGGAACATGCTG+TGG 0.616344 1_1:-698134 None:intergenic
TAGCACACAAGCACGTCAGA+AGG 0.619056 1_1:+700262 Msa0000050:CDS
CTTAAGAGAATCCAACTCCA+AGG 0.619758 1_1:-701034 None:intergenic
AAGGGTAAAAGAGTCATTTG+AGG 0.622133 1_1:+702015 Msa0000050:CDS
GCTCAAGCTCATCAAAGAAG+GGG 0.624859 1_1:+698185 Msa0000050:CDS
TCAAAGTCCAGCTAAGAACA+AGG 0.627959 1_1:+701970 Msa0000050:CDS
AAATGGTTATGACTAAGAGA+AGG 0.639749 1_1:-698407 None:intergenic
ATATTCATATTGTCCAATGG+TGG 0.641525 1_1:+701542 Msa0000050:CDS
TCATAACTCTACTAACAGAA+GGG 0.643236 1_1:-698298 None:intergenic
TACCCTTATTGGCCAAACCA+AGG 0.646502 1_1:+700844 Msa0000050:CDS
GAAGAGGTGTGATTTGTGCA+TGG 0.654069 1_1:-697947 None:intergenic
TGCATGATTGTTGTCCGCGA+CGG 0.659605 1_1:-700957 None:intergenic
TGTTGCAGGAGAATGTTCCA+TGG 0.660728 1_1:+701175 Msa0000050:CDS
CTCAAGCTCATCAAAGAAGG+GGG 0.661271 1_1:+698186 Msa0000050:CDS
CTAGTTATCAAAGTTACATG+AGG 0.668274 1_1:+698960 Msa0000050:CDS
GCAAGAGACACTAACAGCCG+AGG 0.683106 1_1:+697878 Msa0000050:CDS
CTTATACCTCGATTCCGTCG+CGG 0.713335 1_1:+700943 Msa0000050:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATAATTTTTTTTTTAAATA+TGG + chr1_1:699516-699535 Msa0000050:intron 0.0%
!! TAAAAAAAATACAAAAAAGA+GGG + chr1_1:699446-699465 Msa0000050:intron 10.0%
!! TAAATGATTTAAAAATGATT+TGG - chr1_1:700438-700457 None:intergenic 10.0%
!! ATTTATCAAAACATATATGA+AGG + chr1_1:699158-699177 Msa0000050:intron 15.0%
!! CTAAAAAAAATACAAAAAAG+AGG + chr1_1:699445-699464 Msa0000050:intron 15.0%
!! AATATCATAAAGTAAAAACA+TGG + chr1_1:699799-699818 Msa0000050:intron 15.0%
!! CAATAATACACAAAATATAT+CGG - chr1_1:699988-700007 None:intergenic 15.0%
!!! AGTGTTTATTTGTTTAATTT+TGG + chr1_1:700021-700040 Msa0000050:intron 15.0%
!! ATGTAATTATAATTAAGTGT+TGG - chr1_1:700378-700397 None:intergenic 15.0%
!!! CAATTTAATGTTTTTTTTTC+AGG + chr1_1:700693-700712 Msa0000050:intron 15.0%
!!! TTAACAATTTGGATATTTTT+AGG - chr1_1:702268-702287 None:intergenic 15.0%
!! ATAATGAAAAGATTTGAAAG+AGG + chr1_1:698629-698648 Msa0000050:CDS 20.0%
!!! TAAGAATAAATAGTCCTTTT+TGG + chr1_1:699120-699139 Msa0000050:intron 20.0%
!! GTCTTTCATTAGTAAATTTA+TGG - chr1_1:699265-699284 None:intergenic 20.0%
!!! TTTTGTAATTTTGATACAGT+CGG + chr1_1:699396-699415 Msa0000050:intron 20.0%
!!! TTAATTTGTTTTGCAATTTG+TGG + chr1_1:699587-699606 Msa0000050:intron 20.0%
!!! TTACTTTATGATATTGCTTT+TGG - chr1_1:699794-699813 None:intergenic 20.0%
!!! CGATATATTTTGTGTATTAT+TGG + chr1_1:699986-700005 Msa0000050:intron 20.0%
!! AAAAGTTTAACATATATGTG+TGG - chr1_1:700414-700433 None:intergenic 20.0%
!! ATGATTAAAATGTTTCAACT+AGG - chr1_1:700563-700582 None:intergenic 20.0%
!! ATCATTAGATCAAAATTAGA+CGG + chr1_1:700578-700597 Msa0000050:intron 20.0%
!!! TGGACAATATGAATATTTTT+TGG - chr1_1:701538-701557 None:intergenic 20.0%
!! AAAATATTCATATTGTCCAA+TGG + chr1_1:701539-701558 Msa0000050:CDS 20.0%
!! AAAATTTAGTGTACAAGATA+AGG + chr1_1:702054-702073 Msa0000050:CDS 20.0%
!! TATAGTTTATACACTTTGTT+GGG + chr1_1:702192-702211 Msa0000050:CDS 20.0%
! TCCTTCTGTTAAAAACAATT+TGG + chr1_1:698340-698359 Msa0000050:CDS 25.0%
!!! TCCAAATTGTTTTTAACAGA+AGG - chr1_1:698344-698363 None:intergenic 25.0%
! AAAATCTTCTGAGTCTAATA+AGG + chr1_1:698505-698524 Msa0000050:CDS 25.0%
!!! TTGTTTTTGATGTTCTTTTG+AGG + chr1_1:698540-698559 Msa0000050:CDS 25.0%
!!! ATGTTATAAGAGTGTTGAAA+AGG + chr1_1:698750-698769 Msa0000050:CDS 25.0%
!! TATAGACTAAAGTACCAAAA+AGG - chr1_1:699137-699156 None:intergenic 25.0%
!!! GTGTATTTTGTTACTTAGTT+TGG + chr1_1:699180-699199 Msa0000050:intron 25.0%
!!! GTTGTTTTTAGTTTCAACTT+AGG + chr1_1:699213-699232 Msa0000050:intron 25.0%
! TTACTAACAAAACACGTTTA+AGG + chr1_1:699369-699388 Msa0000050:intron 25.0%
! ATGATAAGTGTTTATGTGAA+AGG + chr1_1:699564-699583 Msa0000050:intron 25.0%
! TATTTAAGAGAATGAAACGT+TGG - chr1_1:699854-699873 None:intergenic 25.0%
!!! GTTTAATTTTGGATGCTAAT+TGG + chr1_1:700032-700051 Msa0000050:intron 25.0%
!!! ATCAAAGTTTTTCAGTAACA+AGG + chr1_1:700127-700146 Msa0000050:CDS 25.0%
!!! TTGAGCTTCTTTTTCATAAT+TGG - chr1_1:700192-700211 None:intergenic 25.0%
! TTTGTATTCTTGTACATGTT+GGG - chr1_1:700310-700329 None:intergenic 25.0%
!! TTTTGTATTCTTGTACATGT+TGG - chr1_1:700311-700330 None:intergenic 25.0%
!!! ATCTTATGTGATTTTTGACT+TGG + chr1_1:700643-700662 Msa0000050:intron 25.0%
!! AAGGGTATGATGAATTATAA+GGG - chr1_1:700831-700850 None:intergenic 25.0%
!! TAAGGGTATGATGAATTATA+AGG - chr1_1:700832-700851 None:intergenic 25.0%
! ATAATTCATCATACCCTTAT+TGG + chr1_1:700833-700852 Msa0000050:CDS 25.0%
! TCAACAAAAGATATTGAACT+TGG - chr1_1:700892-700911 None:intergenic 25.0%
!!! TCATATATATAAAGTGTTGC+AGG + chr1_1:701161-701180 Msa0000050:CDS 25.0%
! AATGATTCTGTTGGAAAAAA+AGG + chr1_1:701285-701304 Msa0000050:CDS 25.0%
!!! CAATGAAAAGTTTGTTGTTT+TGG + chr1_1:701430-701449 Msa0000050:CDS 25.0%
!! CTTCTTTTATTACCTAAACA+AGG - chr1_1:701686-701705 None:intergenic 25.0%
!!! TTTTTCAAACAAGTTTAGAG+AGG + chr1_1:702146-702165 Msa0000050:CDS 25.0%
!! TTTTCAAACAAGTTTAGAGA+GGG + chr1_1:702147-702166 Msa0000050:CDS 25.0%
! GTATAGTTTATACACTTTGT+TGG + chr1_1:702191-702210 Msa0000050:CDS 25.0%
! ATAGTTTATACACTTTGTTG+GGG + chr1_1:702193-702212 Msa0000050:CDS 25.0%
! CCATTAAGTAGTTAACAATT+TGG - chr1_1:702279-702298 None:intergenic 25.0%
! CCAAATTGTTAACTACTTAA+TGG + chr1_1:702276-702295 Msa0000050:CDS 25.0%
GCATTTCTTAAAGAAGAAGA+TGG - chr1_1:697999-698018 None:intergenic 30.0%
TCAACTTTAACACTCAAAAG+TGG - chr1_1:698245-698264 None:intergenic 30.0%
TCATAACTCTACTAACAGAA+GGG - chr1_1:698301-698320 None:intergenic 30.0%
AAATGGTTATGACTAAGAGA+AGG - chr1_1:698410-698429 None:intergenic 30.0%
AACCATTTCTTGAGTTCTTA+TGG + chr1_1:698422-698441 Msa0000050:CDS 30.0%
AACCATAAGAACTCAAGAAA+TGG - chr1_1:698427-698446 None:intergenic 30.0%
TTCTTGAGTTCTTATGGTTA+TGG + chr1_1:698428-698447 Msa0000050:CDS 30.0%
!! GACTCAGAAGATTTTAAGAA+AGG - chr1_1:698500-698519 None:intergenic 30.0%
AAGAAAAACACTGTGATAGT+TGG + chr1_1:698569-698588 Msa0000050:CDS 30.0%
GATACAGTTTCTTTAACTGA+AGG + chr1_1:698593-698612 Msa0000050:CDS 30.0%
! ACTCATTTTGTGAAGTTTCA+TGG + chr1_1:698677-698696 Msa0000050:CDS 30.0%
!! TATAAGAGTGTTGAAAAGGA+AGG + chr1_1:698754-698773 Msa0000050:CDS 30.0%
GTTAGTGATTATGTTGCATT+AGG + chr1_1:698776-698795 Msa0000050:CDS 30.0%
! AGAGATTGTTGATTATGTTG+TGG + chr1_1:698871-698890 Msa0000050:CDS 30.0%
GATTATGTTGTGGAAGAAAT+AGG + chr1_1:698881-698900 Msa0000050:CDS 30.0%
GAAGAAATAGGAAAGTTGTT+TGG + chr1_1:698893-698912 Msa0000050:CDS 30.0%
CTAGTTATCAAAGTTACATG+AGG + chr1_1:698960-698979 Msa0000050:CDS 30.0%
!! TACCAACTTTTGAGAATCAA+TGG + chr1_1:698996-699015 Msa0000050:CDS 30.0%
AATTGTTGTCAATTGTCGTA+TGG - chr1_1:699328-699347 None:intergenic 30.0%
AATTTGTGGCTAAGTATGTA+CGG + chr1_1:699601-699620 Msa0000050:intron 30.0%
CAAAACCTCTTTAGACATTA+CGG + chr1_1:699732-699751 Msa0000050:intron 30.0%
! TTCACATGATGTTTTGTACA+AGG + chr1_1:699756-699775 Msa0000050:intron 30.0%
AAAAACTTTGATTCCAGCAT+AGG - chr1_1:700119-700138 None:intergenic 30.0%
!! AAAGTTTTTCAGTAACAAGG+AGG + chr1_1:700130-700149 Msa0000050:CDS 30.0%
ACTAGGATACGATAAATGTA+TGG - chr1_1:700546-700565 None:intergenic 30.0%
ATTCTGTTGGAAAAAAAGGT+TGG + chr1_1:701289-701308 Msa0000050:intron 30.0%
! AGTTGAAATGTTTTCTCAGA+TGG + chr1_1:701343-701362 Msa0000050:CDS 30.0%
! CCAACAATCTTTTCAGAAAA+GGG - chr1_1:701398-701417 None:intergenic 30.0%
!! CCTTTTCTGAAAAGATTGTT+GGG + chr1_1:701396-701415 Msa0000050:CDS 30.0%
!!! TTGGTTGAAAATGCTGATTT+TGG + chr1_1:701449-701468 Msa0000050:CDS 30.0%
! AGCAAGCATTTTCCTTAAAA+GGG - chr1_1:701480-701499 None:intergenic 30.0%
! GAATTTGAGATTGCAAAGTT+TGG + chr1_1:701503-701522 Msa0000050:CDS 30.0%
! ATTGCAAAGTTTGGAACTTT+AGG + chr1_1:701512-701531 Msa0000050:CDS 30.0%
ATATTCATATTGTCCAATGG+TGG + chr1_1:701542-701561 Msa0000050:CDS 30.0%
!!! GATTTTGATGATGATGAAGA+TGG - chr1_1:701662-701681 None:intergenic 30.0%
! TCATCAAAATCACCTTGTTT+AGG + chr1_1:701671-701690 Msa0000050:CDS 30.0%
TTAGCAAGGTAAAAATTCCA+AGG + chr1_1:701723-701742 Msa0000050:CDS 30.0%
CAAGGATTGAAGAAAATGAA+GGG + chr1_1:701741-701760 Msa0000050:CDS 30.0%
CTTGTCAAATCACTTGAAAT+TGG - chr1_1:701881-701900 None:intergenic 30.0%
GATTTGACAAGAGAAACATT+AGG + chr1_1:701890-701909 Msa0000050:CDS 30.0%
CAAATTCTCAATTGAGTCTA+GGG - chr1_1:701939-701958 None:intergenic 30.0%
ACAAATTCTCAATTGAGTCT+AGG - chr1_1:701940-701959 None:intergenic 30.0%
TGACAAAGATGTTTATGTCA+AGG + chr1_1:701996-702015 Msa0000050:CDS 30.0%
GACAAAGATGTTTATGTCAA+GGG + chr1_1:701997-702016 Msa0000050:CDS 30.0%
CTAACAACATGTTTGAGAAA+TGG + chr1_1:702113-702132 Msa0000050:CDS 30.0%
ATGTTTGAGAAATGGCTAAA+AGG + chr1_1:702121-702140 Msa0000050:CDS 30.0%
TGGTAAAGAGGATAGAAAAT+GGG + chr1_1:702216-702235 Msa0000050:CDS 30.0%
AAAGGTGAAGTAGTAGTAGT+TGG - chr1_1:698107-698126 None:intergenic 35.0%
ATGAGTGCATTAGAAAGAGA+AGG - chr1_1:698149-698168 None:intergenic 35.0%
CTCATAACTCTACTAACAGA+AGG - chr1_1:698302-698321 None:intergenic 35.0%
! TCTTTAACTGAAGGACTAGT+TGG + chr1_1:698602-698621 Msa0000050:CDS 35.0%
!! TGAGTTGTTTTCATCTCATC+AGG - chr1_1:698662-698681 None:intergenic 35.0%
GATTATGTTGCATTAGGTGT+TGG + chr1_1:698782-698801 Msa0000050:CDS 35.0%
!! GTTGGAGCTATTTTCTATGT+TGG + chr1_1:698800-698819 Msa0000050:CDS 35.0%
TCTATGTTGGAGATTTGAAG+TGG + chr1_1:698813-698832 Msa0000050:CDS 35.0%
!! TGGATAGTGGATGATAATGA+TGG + chr1_1:698833-698852 Msa0000050:CDS 35.0%
! GAAAGTTGTTTGGTGAAGAA+GGG + chr1_1:698903-698922 Msa0000050:CDS 35.0%
GGAACAAGAATGGTAAGATT+TGG + chr1_1:698924-698943 Msa0000050:CDS 35.0%
! TTACATGAGGTGTCAAATGA+GGG + chr1_1:698973-698992 Msa0000050:CDS 35.0%
!! CACCATTGATTCTCAAAAGT+TGG - chr1_1:699001-699020 None:intergenic 35.0%
GTTTGAGTCTTCATTCATCA+AGG + chr1_1:699056-699075 Msa0000050:CDS 35.0%
ATGTCTTCCGTGAATCATTT+CGG + chr1_1:699238-699257 Msa0000050:intron 35.0%
TTATGGTCCGAAATGATTCA+CGG - chr1_1:699248-699267 None:intergenic 35.0%
!! AAAAGCATTGTTGGTTGGTA+AGG + chr1_1:699655-699674 Msa0000050:intron 35.0%
CAAAACAAAGTGAAGCAGAA+AGG - chr1_1:699702-699721 None:intergenic 35.0%
TGAATCCGTAATGTCTAAAG+AGG - chr1_1:699740-699759 None:intergenic 35.0%
ACGCATTAATTAACCTAGAC+CGG - chr1_1:700481-700500 None:intergenic 35.0%
! TTGGCGTATGTTTGAAATAG+TGG + chr1_1:700662-700681 Msa0000050:intron 35.0%
!!! GTTCCACTTTTTGTTCAACT+GGG - chr1_1:700728-700747 None:intergenic 35.0%
!!! TGTTCCACTTTTTGTTCAAC+TGG - chr1_1:700729-700748 None:intergenic 35.0%
ACAAACAACCTCAAAACCAT+TGG + chr1_1:700773-700792 Msa0000050:CDS 35.0%
AACTATGATTGTTGCTCCAA+TGG - chr1_1:700792-700811 None:intergenic 35.0%
ATAAGGGTAGATCTTTGCAT+TGG - chr1_1:700815-700834 None:intergenic 35.0%
AAGATACTACTACCTTGGTT+TGG - chr1_1:700859-700878 None:intergenic 35.0%
!! GATATTGAACTTGGTGTATC+TGG - chr1_1:700883-700902 None:intergenic 35.0%
ATAAGGTTTGAGCTATAAGC+TGG - chr1_1:700928-700947 None:intergenic 35.0%
ATCATTGAAGCTGAACTCAA+TGG - chr1_1:700983-701002 None:intergenic 35.0%
AAACCAAGTAACAACAACCT+TGG + chr1_1:701017-701036 Msa0000050:CDS 35.0%
TTGGAGTTGGATTCTCTTAA+GGG + chr1_1:701036-701055 Msa0000050:CDS 35.0%
CTTGGAAATTCAACATTCAG+TGG + chr1_1:701096-701115 Msa0000050:CDS 35.0%
TGGTTCAGATCAGAAAAAGA+TGG + chr1_1:701116-701135 Msa0000050:CDS 35.0%
TAGTTCAATAGCAGAAGCTT+TGG + chr1_1:701212-701231 Msa0000050:CDS 35.0%
! GGTTGATTCCAAATCATCAA+AGG + chr1_1:701233-701252 Msa0000050:CDS 35.0%
! AGCACATTCCTTTGATGATT+TGG - chr1_1:701244-701263 None:intergenic 35.0%
TTGCAAGGAAATGATTCTGT+TGG + chr1_1:701276-701295 Msa0000050:CDS 35.0%
!! CCCTTTTCTGAAAAGATTGT+TGG + chr1_1:701395-701414 Msa0000050:CDS 35.0%
! CCCAACAATCTTTTCAGAAA+AGG - chr1_1:701399-701418 None:intergenic 35.0%
!! ATTTTGGTGACACCCTTTTA+AGG + chr1_1:701465-701484 Msa0000050:CDS 35.0%
! CAGCAAGCATTTTCCTTAAA+AGG - chr1_1:701481-701500 None:intergenic 35.0%
TGTCAATGAAGATCAGAAGA+AGG + chr1_1:701571-701590 Msa0000050:CDS 35.0%
GATGGTGATAACTCAAAAGT+TGG - chr1_1:701644-701663 None:intergenic 35.0%
!! TGAACTTGACTTGTTTAGCA+AGG + chr1_1:701709-701728 Msa0000050:CDS 35.0%
! CCTTCATTTTCTTCAATCCT+TGG - chr1_1:701743-701762 None:intergenic 35.0%
CCAAGGATTGAAGAAAATGA+AGG + chr1_1:701740-701759 Msa0000050:CDS 35.0%
AGAAGATGAAGACTATGATG+AGG + chr1_1:701844-701863 Msa0000050:CDS 35.0%
GAAGATGAAGACTATGATGA+GGG + chr1_1:701845-701864 Msa0000050:CDS 35.0%
AAGGGTAAAAGAGTCATTTG+AGG + chr1_1:702015-702034 Msa0000050:CDS 35.0%
! AGTCATTTGAGGAGGTTTTT+GGG + chr1_1:702026-702045 Msa0000050:CDS 35.0%
TGTACAAGATAAGGTGATAG+AGG + chr1_1:702063-702082 Msa0000050:CDS 35.0%
GATAAGGTGATAGAGGAAAT+TGG + chr1_1:702070-702089 Msa0000050:CDS 35.0%
TGATAGAGGAAATTGGTGTA+GGG + chr1_1:702077-702096 Msa0000050:CDS 35.0%
ACAAGTTTAGAGAGGGTTAA+TGG + chr1_1:702154-702173 Msa0000050:CDS 35.0%
GTGGTAAAGAGGATAGAAAA+TGG + chr1_1:702215-702234 Msa0000050:CDS 35.0%
AGGATAGAAAATGGGATAGT+GGG + chr1_1:702224-702243 Msa0000050:CDS 35.0%
!! AAAATGGGATAGTGGGTTTA+TGG + chr1_1:702231-702250 Msa0000050:CDS 35.0%
!! AAATGGGATAGTGGGTTTAT+GGG + chr1_1:702232-702251 Msa0000050:CDS 35.0%
! TCAATCTTGAAGCACTCTCT+AGG + chr1_1:697906-697925 Msa0000050:CDS 40.0%
TCAAGAGCTCTACATTGAAG+AGG - chr1_1:698053-698072 None:intergenic 40.0%
AGCTCAAGCTCATCAAAGAA+GGG + chr1_1:698184-698203 Msa0000050:CDS 40.0%
AACAGAAGGGTCATCAAGAA+TGG - chr1_1:698288-698307 None:intergenic 40.0%
AGTAGAGTTATGAGAGAAGC+TGG + chr1_1:698308-698327 Msa0000050:CDS 40.0%
! TGGAGATTTGAAGTGGATAG+TGG + chr1_1:698820-698839 Msa0000050:CDS 40.0%
! GGAAAGTTGTTTGGTGAAGA+AGG + chr1_1:698902-698921 Msa0000050:CDS 40.0%
! GTTACATGAGGTGTCAAATG+AGG + chr1_1:698972-698991 Msa0000050:CDS 40.0%
GCTAAGTATGTACGGTATTC+TGG + chr1_1:699609-699628 Msa0000050:intron 40.0%
GTACGGTATTCTGGACTATA+TGG + chr1_1:699618-699637 Msa0000050:intron 40.0%
ATTCTGGACTATATGGCAGA+AGG + chr1_1:699625-699644 Msa0000050:intron 40.0%
!! CTGTGAAAAGCATTGTTGGT+TGG + chr1_1:699650-699669 Msa0000050:intron 40.0%
!! CATTGTTGGTTGGTAAGGTA+AGG + chr1_1:699660-699679 Msa0000050:intron 40.0%
TTGATTCCAGCATAGGAGAT+GGG - chr1_1:700112-700131 None:intergenic 40.0%
TTTGATTCCAGCATAGGAGA+TGG - chr1_1:700113-700132 None:intergenic 40.0%
ATGAAGGCAACAGATTCTTC+TGG - chr1_1:700229-700248 None:intergenic 40.0%
AGAAGAATCTGTTGCCTTCA+TGG + chr1_1:700228-700247 Msa0000050:CDS 40.0%
!! ACCGTTGATTTGAGATCAAC+CGG + chr1_1:700459-700478 Msa0000050:intron 40.0%
ACCGGTTGATCTCAAATCAA+CGG - chr1_1:700463-700482 None:intergenic 40.0%
TGACCCAGTTGAACAAAAAG+TGG + chr1_1:700722-700741 Msa0000050:CDS 40.0%
! TTTGAGGTTGTTTGTTCTGG+TGG - chr1_1:700768-700787 None:intergenic 40.0%
!!! GGTTTTGAGGTTGTTTGTTC+TGG - chr1_1:700771-700790 None:intergenic 40.0%
!! TTGTTGCTCCAATGGTTTTG+AGG - chr1_1:700784-700803 None:intergenic 40.0%
!! TACCTTGGTTTGGCCAATAA+GGG - chr1_1:700849-700868 None:intergenic 40.0%
GTTTGAGCTATAAGCTGGTT+TGG - chr1_1:700923-700942 None:intergenic 40.0%
! ACTCCAAGGTTGTTGTTACT+TGG - chr1_1:701023-701042 None:intergenic 40.0%
AGTAACAACAACCTTGGAGT+TGG + chr1_1:701023-701042 Msa0000050:CDS 40.0%
CTTAAGAGAATCCAACTCCA+AGG - chr1_1:701037-701056 None:intergenic 40.0%
CTTGGAGTTGGATTCTCTTA+AGG + chr1_1:701035-701054 Msa0000050:CDS 40.0%
GTTGGATTCTCTTAAGGGTA+TGG + chr1_1:701041-701060 Msa0000050:CDS 40.0%
! GATTCTCTTAAGGGTATGGA+AGG + chr1_1:701045-701064 Msa0000050:CDS 40.0%
GTAAAGACAACTCTTGCACT+TGG + chr1_1:701078-701097 Msa0000050:CDS 40.0%
CTAACTGTTTCACATTGCCA+TGG - chr1_1:701195-701214 None:intergenic 40.0%
! CATCAAAGGAATGTGCTACT+TGG + chr1_1:701247-701266 Msa0000050:CDS 40.0%
!!! GCTACTTGGTTGTTTTTGCA+AGG + chr1_1:701261-701280 Msa0000050:CDS 40.0%
GCAATTGCAGAATCAGTGTT+TGG + chr1_1:701317-701336 Msa0000050:intron 40.0%
ATTGACAATACTGCCACCAT+TGG - chr1_1:701558-701577 None:intergenic 40.0%
GAAGGATTCAGTGATGAAGT+TGG + chr1_1:701589-701608 Msa0000050:CDS 40.0%
TCAAAGTCCAGCTAAGAACA+AGG + chr1_1:701970-701989 Msa0000050:CDS 40.0%
GTCATTTCCTTGTTCTTAGC+TGG - chr1_1:701980-701999 None:intergenic 40.0%
GGTAAAAGAGTCATTTGAGG+AGG + chr1_1:702018-702037 Msa0000050:CDS 40.0%
! GAGTCATTTGAGGAGGTTTT+TGG + chr1_1:702025-702044 Msa0000050:CDS 40.0%
GTGATAGAGGAAATTGGTGT+AGG + chr1_1:702076-702095 Msa0000050:CDS 40.0%
AGTTTAGAGAGGGTTAATGG+TGG + chr1_1:702157-702176 Msa0000050:CDS 40.0%
GTTTAGAGAGGGTTAATGGT+GGG + chr1_1:702158-702177 Msa0000050:CDS 40.0%
TTTAGAGAGGGTTAATGGTG+GGG + chr1_1:702159-702178 Msa0000050:CDS 40.0%
! GTTAATGGTGGGGGTAAAAA+TGG + chr1_1:702169-702188 Msa0000050:CDS 40.0%
GTTTATACACTTTGTTGGGG+TGG + chr1_1:702196-702215 Msa0000050:CDS 40.0%
GAGGATAGAAAATGGGATAG+TGG + chr1_1:702223-702242 Msa0000050:CDS 40.0%
CTTCAAGATTGAAGCAGCCT+CGG - chr1_1:697898-697917 None:intergenic 45.0%
! GAAGAGGTGTGATTTGTGCA+TGG - chr1_1:697950-697969 None:intergenic 45.0%
ACATGCTGTGGTTGAAGCAA+AGG - chr1_1:698125-698144 None:intergenic 45.0%
GAAAGAGAAGGAACATGCTG+TGG - chr1_1:698137-698156 None:intergenic 45.0%
GAGCTCAAGCTCATCAAAGA+AGG + chr1_1:698183-698202 Msa0000050:CDS 45.0%
GCTCAAGCTCATCAAAGAAG+GGG + chr1_1:698185-698204 Msa0000050:CDS 45.0%
CTCAAGCTCATCAAAGAAGG+GGG + chr1_1:698186-698205 Msa0000050:CDS 45.0%
GGTGAAGAAGGGAACAAGAA+TGG + chr1_1:698914-698933 Msa0000050:CDS 45.0%
!! GGCACTGTGAAAAGCATTGT+TGG + chr1_1:699646-699665 Msa0000050:intron 45.0%
TCAAAACCCATCTCCTATGC+TGG + chr1_1:700103-700122 Msa0000050:CDS 45.0%
CTATGAGACTGAAGCCATGA+AGG - chr1_1:700245-700264 None:intergenic 45.0%
! GATTTGAGATCAACCGGTCT+AGG + chr1_1:700465-700484 Msa0000050:intron 45.0%
TACCCTTATTGGCCAAACCA+AGG + chr1_1:700844-700863 Msa0000050:CDS 45.0%
!! CTACCTTGGTTTGGCCAATA+AGG - chr1_1:700850-700869 None:intergenic 45.0%
CTGGCAAGATACTACTACCT+TGG - chr1_1:700864-700883 None:intergenic 45.0%
TGTTGCAGGAGAATGTTCCA+TGG + chr1_1:701175-701194 Msa0000050:CDS 45.0%
TTAGAGAGGGTTAATGGTGG+GGG + chr1_1:702160-702179 Msa0000050:CDS 45.0%
ACTTTGTTGGGGTGGTAAAG+AGG + chr1_1:702204-702223 Msa0000050:CDS 45.0%
CTAGGCTTAGCACGTAGAAG+AGG + chr1_1:697924-697943 Msa0000050:CDS 50.0%
AGTGTAGCAGCAACGTGAAG+AGG - chr1_1:697966-697985 None:intergenic 50.0%
CAAGCTGTTCCTGTTCCATC+TGG + chr1_1:699025-699044 Msa0000050:CDS 50.0%
CTCAAACCAAGTCCACCAGA+TGG - chr1_1:699043-699062 None:intergenic 50.0%
GGCAACAGATTCTTCTGGTC+TGG - chr1_1:700224-700243 None:intergenic 50.0%
TAGCACACAAGCACGTCAGA+AGG + chr1_1:700262-700281 Msa0000050:CDS 50.0%
CTTATACCTCGATTCCGTCG+CGG + chr1_1:700943-700962 Msa0000050:CDS 50.0%
TGCATGATTGTTGTCCGCGA+CGG - chr1_1:700960-700979 None:intergenic 50.0%
GAGGAAATTGGTGTAGGGTG+TGG + chr1_1:702082-702101 Msa0000050:CDS 50.0%
GCAAGAGACACTAACAGCCG+AGG + chr1_1:697878-697897 Msa0000050:CDS 55.0%
GTGGTTGCTGCTGTTGCTGT+TGG - chr1_1:698226-698245 None:intergenic 55.0%
GCTGTTCCTGTTCCATCTGG+TGG + chr1_1:699028-699047 Msa0000050:CDS 55.0%
CCAAGTCCACCAGATGGAAC+AGG - chr1_1:699037-699056 None:intergenic 55.0%
!! CCTGTTCCATCTGGTGGACT+TGG + chr1_1:699034-699053 Msa0000050:CDS 55.0%
CGCGACGGAATCGAGGTATA+AGG - chr1_1:700945-700964 None:intergenic 55.0%
TGTTGTCCGCGACGGAATCG+AGG - chr1_1:700952-700971 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 697845 702303 697845 ID=Msa0000050;Name=Msa0000050
chr1_1 mRNA 697845 702303 697845 ID=Msa0000050-mRNA-1;Parent=Msa0000050;Name=Msa0000050-mRNA-1;_AED=0.02;_eAED=0.02;_QI=10|0.66|0.5|1|1|1|4|0|999
chr1_1 exon 697845 699077 697845 ID=Msa0000050-mRNA-1:exon:18;Parent=Msa0000050-mRNA-1
chr1_1 exon 700076 700283 700076 ID=Msa0000050-mRNA-1:exon:19;Parent=Msa0000050-mRNA-1
chr1_1 exon 700715 701306 700715 ID=Msa0000050-mRNA-1:exon:20;Parent=Msa0000050-mRNA-1
chr1_1 exon 701327 702303 701327 ID=Msa0000050-mRNA-1:exon:21;Parent=Msa0000050-mRNA-1
chr1_1 five_prime_UTR 697845 697854 697845 ID=Msa0000050-mRNA-1:five_prime_utr;Parent=Msa0000050-mRNA-1
chr1_1 CDS 697855 699077 697855 ID=Msa0000050-mRNA-1:cds;Parent=Msa0000050-mRNA-1
chr1_1 CDS 700076 700283 700076 ID=Msa0000050-mRNA-1:cds;Parent=Msa0000050-mRNA-1
chr1_1 CDS 700715 701306 700715 ID=Msa0000050-mRNA-1:cds;Parent=Msa0000050-mRNA-1
chr1_1 CDS 701327 702303 701327 ID=Msa0000050-mRNA-1:cds;Parent=Msa0000050-mRNA-1
Gene Sequence

>Msa0000050

ATGCGCTCAGGAGCTTATACATTGCAAGAGACACTAACAGCCGAGGCTGCTTCAATCTTGAAGCACTCTCTAGGCTTAGCACGTAGAAGAGGCCATGCACAAATCACACCTCTTCACGTTGCTGCTACACTTTTGAGTTTACCATCTTCTTCTTTAAGAAATGCATGTCTCAAATCTCAACAACAAAATAATCATCCTCTTCAATGTAGAGCTCTTGAACTTTGCTTCAATGTTGCTCTTAATAGACTTCCAACTACTACTACTTCACCTTTGCTTCAACCACAGCATGTTCCTTCTCTTTCTAATGCACTCATTGCTGCTCTTAAAAGAGCTCAAGCTCATCAAAGAAGGGGGTGTATTGAGCAAAACCAACAGCAACAGCAGCAACCACTTTTGAGTGTTAAAGTTGAACTTGATCAGCTTATTCTTTCCATTCTTGATGACCCTTCTGTTAGTAGAGTTATGAGAGAAGCTGGTTTTTCTAGTCCTTCTGTTAAAAACAATTTGGAAAACTCTTCAACTTTATTAAACTCTTCTGTTTTTCATTCTTCACCTTCTCTTAGTCATAACCATTTCTTGAGTTCTTATGGTTATGGTTCTGTTCTCTTTTCTTCACAGAAGAAAGAACAAGTAGTATATCATCCTTTCTTAAAATCTTCTGAGTCTAATAAGGAAGATATTAATCTTGTTTTTGATGTTCTTTTGAGGAAGAAGAAGAAAAACACTGTGATAGTTGGTGATACAGTTTCTTTAACTGAAGGACTAGTTGGTGAAATAATGAAAAGATTTGAAAGAGGTGAAGTACCTGATGAGATGAAAACAACTCATTTTGTGAAGTTTCATGGACTTAGTTCAGTTTCTTTGAAGTATATGAAAAAAGAAGAAGTTGAAATGAATGTTATAAGAGTGTTGAAAAGGAAGGTTAGTGATTATGTTGCATTAGGTGTTGGAGCTATTTTCTATGTTGGAGATTTGAAGTGGATAGTGGATGATAATGATGGAAGTTTGAATGAAAAAGAGATTGTTGATTATGTTGTGGAAGAAATAGGAAAGTTGTTTGGTGAAGAAGGGAACAAGAATGGTAAGATTTGGCTTGTTGCAACATCTAGTTATCAAAGTTACATGAGGTGTCAAATGAGGGTACCAACTTTTGAGAATCAATGGTGTCTTCAAGCTGTTCCTGTTCCATCTGGTGGACTTGGTTTGAGTCTTCATTCATCAAGTGTGCATGATTCAAAAATGAGCATCTCTCAAAACCCATCTCCTATGCTGGAATCAAAGTTTTTCAGTAACAAGGAGGAACATGAGAAGCTTAATTGCTGTGAAGAGTGTGTCTCCAATTATGAAAAAGAAGCTCAATTGTTCAAACCAGACCAGAAGAATCTGTTGCCTTCATGGCTTCAGTCTCATAGCACACAAGCACGTCAGAAGGATGAATTGACCCAGTTGAACAAAAAGTGGAACAGATTGTGTCAATGTCTCCACCAGAACAAACAACCTCAAAACCATTGGAGCAACAATCATAGTTCCAATGCAAAGATCTACCCTTATAATTCATCATACCCTTATTGGCCAAACCAAGGTAGTAGTATCTTGCCAGATACACCAAGTTCAATATCTTTTGTTGATTCTGCAACCAAACCAGCTTATAGCTCAAACCTTATACCTCGATTCCGTCGCGGACAACAATCATGCACCATTGAGTTCAGCTTCAATGATGAAAAAGCACAGAAAAACCAAGTAACAACAACCTTGGAGTTGGATTCTCTTAAGGGTATGGAAGGTACTAAAGAAGTAAAGACAACTCTTGCACTTGGAAATTCAACATTCAGTGGTTCAGATCAGAAAAAGATGGAAAATTTAACACTGCAAAGAGATCATATATATAAAGTGTTGCAGGAGAATGTTCCATGGCAATGTGAAACAGTTAGTTCAATAGCAGAAGCTTTGGTTGATTCCAAATCATCAAAGGAATGTGCTACTTGGTTGTTTTTGCAAGGAAATGATTCTGTTGGAAAAAAAGAATCAGTGTTTGGATCAGTTGAAATGTTTTCTCAGATGGATATGATGAAGAGAGAGAATGCAGAGACACCCTTTTCTGAAAAGATTGTTGGGCTATTGAAAAACAATGAAAAGTTTGTTGTTTTGGTTGAAAATGCTGATTTTGGTGACACCCTTTTAAGGAAAATGCTTGCTGATGAATTTGAGATTGCAAAGTTTGGAACTTTAGGCCAAAAAATATTCATATTGTCCAATGGTGGCAGTATTGTCAATGAAGATCAGAAGAAGGATTCAGTGATGAAGTTGGTTTTGAAGATTAGTGAAACTGAGAAAAAACCAACTTTTGAGTTATCACCATCTTCATCATCATCAAAATCACCTTGTTTAGGTAATAAAAGAAGTGCTGAACTTGACTTGTTTAGCAAGGTAAAAATTCCAAGGATTGAAGAAAATGAAGGGAACAAGAAGATAGAATTTTCATTTTCAAGACAATCAAGCTTCAACAACACTCTTGATTTGAATATGAAAGCTGATGAAGAAGAAGATGAAGACTATGATGAGGGAGAAAATAGTCCAATTTCAAGTGATTTGACAAGAGAAACATTAGGAGAACATTTGATCTCAAATGAGTCCCTAGACTCAATTGAGAATTTGTTTGAGTTCAATCAAAGTCCAGCTAAGAACAAGGAAATGACAAAGATGTTTATGTCAAGGGTAAAAGAGTCATTTGAGGAGGTTTTTGGGAATGTAAAATTTAGTGTACAAGATAAGGTGATAGAGGAAATTGGTGTAGGGTGTGGTTCTTTTACTAACAACATGTTTGAGAAATGGCTAAAAGGCATTTTTCAAACAAGTTTAGAGAGGGTTAATGGTGGGGGTAAAAATGGTATAGTTTATACACTTTGTTGGGGTGGTAAAGAGGATAGAAAATGGGATAGTGGGTTTATGGGTTCATGTTTGCCTAAAAATATCCAAATTGTTAACTACTTAATGGATTGA

Protein sequence

>Msa0000050

MRSGAYTLQETLTAEAASILKHSLGLARRRGHAQITPLHVAATLLSLPSSSLRNACLKSQQQNNHPLQCRALELCFNVALNRLPTTTTSPLLQPQHVPSLSNALIAALKRAQAHQRRGCIEQNQQQQQQPLLSVKVELDQLILSILDDPSVSRVMREAGFSSPSVKNNLENSSTLLNSSVFHSSPSLSHNHFLSSYGYGSVLFSSQKKEQVVYHPFLKSSESNKEDINLVFDVLLRKKKKNTVIVGDTVSLTEGLVGEIMKRFERGEVPDEMKTTHFVKFHGLSSVSLKYMKKEEVEMNVIRVLKRKVSDYVALGVGAIFYVGDLKWIVDDNDGSLNEKEIVDYVVEEIGKLFGEEGNKNGKIWLVATSSYQSYMRCQMRVPTFENQWCLQAVPVPSGGLGLSLHSSSVHDSKMSISQNPSPMLESKFFSNKEEHEKLNCCEECVSNYEKEAQLFKPDQKNLLPSWLQSHSTQARQKDELTQLNKKWNRLCQCLHQNKQPQNHWSNNHSSNAKIYPYNSSYPYWPNQGSSILPDTPSSISFVDSATKPAYSSNLIPRFRRGQQSCTIEFSFNDEKAQKNQVTTTLELDSLKGMEGTKEVKTTLALGNSTFSGSDQKKMENLTLQRDHIYKVLQENVPWQCETVSSIAEALVDSKSSKECATWLFLQGNDSVGKKESVFGSVEMFSQMDMMKRENAETPFSEKIVGLLKNNEKFVVLVENADFGDTLLRKMLADEFEIAKFGTLGQKIFILSNGGSIVNEDQKKDSVMKLVLKISETEKKPTFELSPSSSSSKSPCLGNKRSAELDLFSKVKIPRIEENEGNKKIEFSFSRQSSFNNTLDLNMKADEEEDEDYDEGENSPISSDLTRETLGEHLISNESLDSIENLFEFNQSPAKNKEMTKMFMSRVKESFEEVFGNVKFSVQDKVIEEIGVGCGSFTNNMFEKWLKGIFQTSLERVNGGGKNGIVYTLCWGGKEDRKWDSGFMGSCLPKNIQIVNYLMD*