AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0463950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463950 MtrunA17_Chr3g0114451 91.824 318 9 1 255 555 1 318 0.0 591
Msa0463950 MtrunA17_Chr3g0114451 85.821 268 20 1 1 250 1 268 2.20e-164 469
Msa0463950 MtrunA17_Chr3g0114461 90.217 184 17 1 373 555 9 192 6.22e-118 346
Msa0463950 MtrunA17_Chr3g0114461 94.118 136 8 0 118 253 9 144 1.68e-89 273
Msa0463950 MtrunA17_Chr3g0106901 54.777 314 121 2 259 555 14 323 3.92e-117 349
Msa0463950 MtrunA17_Chr3g0106901 52.434 267 105 2 5 253 14 276 4.35e-91 282
Msa0463950 MtrunA17_Chr3g0129061 56.825 315 111 3 260 555 14 322 6.11e-117 349
Msa0463950 MtrunA17_Chr3g0129061 54.851 268 95 3 6 253 14 275 3.58e-91 283
Msa0463950 MtrunA17_Chr3g0129051 55.521 317 116 3 258 555 12 322 8.54e-117 348
Msa0463950 MtrunA17_Chr3g0129051 52.128 282 107 4 1 260 9 284 2.49e-92 285
Msa0463950 MtrunA17_Chr5g0438021 56.250 320 119 3 255 555 8 325 2.18e-116 347
Msa0463950 MtrunA17_Chr5g0438021 58.209 268 87 4 6 253 16 278 4.20e-95 293
Msa0463950 MtrunA17_Chr3g0129041 55.096 314 122 2 261 555 9 322 8.36e-113 338
Msa0463950 MtrunA17_Chr3g0129041 53.358 268 99 3 6 253 14 275 1.66e-89 278
Msa0463950 MtrunA17_Chr3g0106921 54.921 315 115 4 261 555 13 320 5.98e-111 333
Msa0463950 MtrunA17_Chr3g0106921 55.224 268 92 4 7 253 13 273 1.25e-89 278
Msa0463950 MtrunA17_Chr7g0244461 55.102 294 115 1 279 555 19 312 3.85e-110 331
Msa0463950 MtrunA17_Chr7g0244461 53.846 247 96 1 25 253 19 265 5.01e-86 269
Msa0463950 MtrunA17_Chr2g0320071 52.548 314 132 1 259 555 4 317 2.65e-109 329
Msa0463950 MtrunA17_Chr2g0320071 51.292 271 113 2 1 253 1 270 2.55e-85 267
Msa0463950 MtrunA17_Chr2g0320101 53.055 311 129 1 262 555 7 317 4.85e-108 326
Msa0463950 MtrunA17_Chr2g0320101 51.292 271 113 2 1 253 1 270 2.75e-84 265
Msa0463950 MtrunA17_Chr5g0432441 53.605 319 120 4 258 555 15 326 5.87e-107 323
Msa0463950 MtrunA17_Chr5g0432441 55.777 251 89 3 25 253 29 279 1.88e-85 268
Msa0463950 MtrunA17_Chr4g0013171 54.012 324 123 6 255 555 1 321 1.27e-106 322
Msa0463950 MtrunA17_Chr4g0013171 52.000 275 107 4 3 257 8 277 1.34e-82 260
Msa0463950 MtrunA17_Chr4g0013201 52.381 294 123 1 279 555 45 338 2.05e-103 315
Msa0463950 MtrunA17_Chr4g0013201 51.613 248 102 1 24 253 44 291 3.70e-85 268
Msa0463950 MtrunA17_Chr2g0320061 51.923 312 132 2 262 555 7 318 1.79e-102 311
Msa0463950 MtrunA17_Chr2g0320061 53.279 244 96 1 25 250 24 267 7.88e-81 256
Msa0463950 MtrunA17_Chr4g0013181 55.479 292 111 3 283 555 62 353 2.56e-102 312
Msa0463950 MtrunA17_Chr4g0013181 54.508 244 91 2 29 252 62 305 5.98e-80 254
Msa0463950 MtrunA17_Chr2g0320091 51.411 319 136 3 255 555 1 318 1.19e-101 309
Msa0463950 MtrunA17_Chr2g0320091 53.629 248 96 2 25 253 24 271 4.47e-79 251
Msa0463950 MtrunA17_Chr3g0107881 49.843 319 136 4 259 555 8 324 2.09e-99 304
Msa0463950 MtrunA17_Chr3g0107881 49.624 266 111 3 5 249 8 271 2.96e-81 257
Msa0463950 MtrunA17_Chr2g0320031 50.962 312 130 3 262 555 13 319 2.68e-99 303
Msa0463950 MtrunA17_Chr2g0320031 47.037 270 125 1 1 252 1 270 1.50e-76 244
Msa0463950 MtrunA17_Chr2g0320051 50.962 312 135 2 262 555 7 318 5.57e-99 303
Msa0463950 MtrunA17_Chr2g0320051 52.459 244 98 1 25 250 24 267 1.45e-78 250
Msa0463950 MtrunA17_Chr7g0244451 49.841 315 134 2 258 555 9 316 6.61e-99 302
Msa0463950 MtrunA17_Chr7g0244451 54.098 244 94 1 25 250 23 266 5.39e-82 259
Msa0463950 MtrunA17_Chr1g0213061 48.726 314 140 5 262 555 9 321 9.79e-99 302
Msa0463950 MtrunA17_Chr1g0213061 51.406 249 100 3 25 253 26 273 2.18e-81 258
Msa0463950 MtrunA17_Chr5g0432331 49.415 342 147 6 237 555 14 352 4.92e-98 301
Msa0463950 MtrunA17_Chr5g0432331 51.626 246 97 3 25 249 55 299 5.87e-76 244
Msa0463950 MtrunA17_Chr5g0432351 49.689 322 137 5 256 555 3 321 3.45e-97 298
Msa0463950 MtrunA17_Chr5g0432351 48.689 267 113 4 4 249 5 268 6.91e-77 246
Msa0463950 MtrunA17_Chr5g0432341 50.314 318 133 5 260 555 7 321 7.26e-97 297
Msa0463950 MtrunA17_Chr5g0432341 49.057 265 111 4 6 249 7 268 1.62e-76 244
Msa0463950 MtrunA17_Chr7g0224371 52.595 289 119 2 284 555 35 322 1.08e-96 297
Msa0463950 MtrunA17_Chr7g0224371 47.925 265 116 3 4 250 12 272 8.17e-75 240
Msa0463950 MtrunA17_Chr8g0372601 52.824 301 117 3 280 555 30 330 8.44e-94 290
Msa0463950 MtrunA17_Chr8g0372601 51.807 249 95 2 26 249 30 278 1.29e-74 240
Msa0463950 MtrunA17_Chr5g0404721 51.852 297 118 3 284 555 34 330 6.72e-93 287
Msa0463950 MtrunA17_Chr5g0404721 50.204 245 97 2 30 249 34 278 4.17e-73 236
Msa0463950 MtrunA17_Chr4g0013191 49.320 294 130 2 281 555 47 340 6.92e-93 288
Msa0463950 MtrunA17_Chr4g0013191 46.333 300 126 6 7 271 17 316 5.14e-76 244
Msa0463950 MtrunA17_Chr4g0043391 49.231 325 137 6 255 555 4 324 1.60e-92 286
Msa0463950 MtrunA17_Chr4g0043391 48.134 268 113 4 7 252 12 275 2.48e-73 236
Msa0463950 MtrunA17_Chr4g0038171 49.211 317 135 5 261 555 9 321 4.36e-92 285
Msa0463950 MtrunA17_Chr4g0038171 48.507 268 112 4 7 252 9 272 1.01e-73 237
Msa0463950 MtrunA17_Chr4g0038151 46.875 320 149 3 257 555 2 321 8.67e-92 284
Msa0463950 MtrunA17_Chr4g0038151 49.004 251 106 3 25 253 24 274 3.95e-72 233
Msa0463950 MtrunA17_Chr4g0038161 47.152 316 142 4 261 555 9 320 1.70e-90 281
Msa0463950 MtrunA17_Chr4g0038161 46.545 275 118 5 1 253 6 273 1.22e-70 229
Msa0463950 MtrunA17_Chr1g0155611 48.675 302 129 3 280 555 46 347 8.53e-89 277
Msa0463950 MtrunA17_Chr1g0155611 48.193 249 104 2 26 249 46 294 4.15e-68 223
Msa0463950 MtrunA17_Chr1g0175561 44.545 330 148 5 253 555 5 326 3.75e-88 275
Msa0463950 MtrunA17_Chr1g0175561 44.891 274 117 4 2 249 8 273 2.49e-68 223
Msa0463950 MtrunA17_Chr7g0258811 44.073 329 150 5 254 555 50 371 4.60e-88 276
Msa0463950 MtrunA17_Chr7g0258811 47.410 251 106 3 25 249 68 318 1.08e-68 226
Msa0463950 MtrunA17_Chr2g0299691 46.224 331 141 6 255 555 35 358 2.59e-85 269
Msa0463950 MtrunA17_Chr2g0299691 48.980 245 98 3 30 249 60 302 4.16e-66 219
Msa0463950 MtrunA17_Chr4g0068621 47.386 306 138 3 273 555 31 336 2.26e-84 265
Msa0463950 MtrunA17_Chr4g0068621 44.000 300 128 4 3 262 6 305 7.89e-73 235
Msa0463950 MtrunA17_Chr4g0070951 46.012 326 142 5 258 555 10 329 2.45e-84 265
Msa0463950 MtrunA17_Chr4g0070951 46.324 272 115 4 2 248 8 273 6.91e-68 222
Msa0463950 MtrunA17_Chr2g0292211 44.688 320 151 4 262 555 22 341 3.23e-83 263
Msa0463950 MtrunA17_Chr2g0292211 46.800 250 108 3 25 249 39 288 3.62e-67 221
Msa0463950 MtrunA17_Chr2g0291751 47.195 303 134 3 279 555 28 330 8.75e-83 262
Msa0463950 MtrunA17_Chr2g0291751 48.400 250 104 2 25 249 28 277 3.18e-67 221
Msa0463950 MtrunA17_Chr2g0292251 44.554 303 142 3 279 555 27 329 1.72e-81 259
Msa0463950 MtrunA17_Chr2g0292251 40.256 313 142 5 25 309 27 322 2.94e-65 216
Msa0463950 MtrunA17_Chr2g0292271 42.296 331 161 4 251 555 4 330 3.70e-80 255
Msa0463950 MtrunA17_Chr2g0292271 41.606 274 133 3 1 249 6 277 4.68e-62 208
Msa0463950 MtrunA17_Chr5g0400331 45.603 307 135 4 280 555 26 331 1.22e-79 253
Msa0463950 MtrunA17_Chr5g0400331 45.455 264 116 2 15 250 15 278 4.12e-66 218
Msa0463950 MtrunA17_Chr2g0292091 43.564 303 145 3 279 555 23 325 1.32e-79 253
Msa0463950 MtrunA17_Chr2g0292091 44.664 253 115 2 22 249 20 272 6.60e-67 220
Msa0463950 MtrunA17_Chr2g0292261 46.078 306 139 4 276 555 25 330 2.37e-79 253
Msa0463950 MtrunA17_Chr2g0292261 46.586 249 108 3 25 248 28 276 2.20e-63 211
Msa0463950 MtrunA17_Chr5g0402571 42.857 322 154 5 259 555 10 326 4.57e-79 251
Msa0463950 MtrunA17_Chr5g0402571 43.798 258 118 4 25 256 26 282 2.10e-62 208
Msa0463950 MtrunA17_Chr2g0292151 44.554 303 142 3 279 555 28 330 4.88e-79 252
Msa0463950 MtrunA17_Chr2g0292151 46.400 250 109 2 25 249 28 277 1.62e-66 219
Msa0463950 MtrunA17_Chr5g0402581 42.320 319 158 4 262 555 9 326 9.76e-79 251
Msa0463950 MtrunA17_Chr5g0402581 40.647 278 132 5 25 270 26 302 6.35e-61 204
Msa0463950 MtrunA17_Chr4g0013721 44.932 296 136 4 284 555 104 396 2.87e-78 252
Msa0463950 MtrunA17_Chr4g0013721 43.426 251 116 3 24 249 98 347 6.21e-60 204
Msa0463950 MtrunA17_Chr2g0292241 44.224 303 143 3 279 555 28 330 6.42e-78 249
Msa0463950 MtrunA17_Chr2g0292241 43.426 251 117 2 25 250 28 278 1.04e-60 204
Msa0463950 MtrunA17_Chr2g0292181 44.224 303 143 3 279 555 37 339 7.58e-78 249
Msa0463950 MtrunA17_Chr2g0292181 44.800 250 113 2 25 249 37 286 5.52e-63 211
Msa0463950 MtrunA17_Chr4g0013821 43.243 296 141 4 284 555 32 324 4.37e-77 247
Msa0463950 MtrunA17_Chr4g0013821 44.444 252 114 3 25 251 27 277 2.21e-63 211
Msa0463950 MtrunA17_Chr2g0292111 43.960 298 141 3 284 555 33 330 5.12e-75 242
Msa0463950 MtrunA17_Chr2g0292111 44.000 250 115 2 25 249 28 277 5.27e-62 207
Msa0463950 MtrunA17_Chr5g0432401 43.218 317 117 6 260 554 10 285 5.20e-75 239
Msa0463950 MtrunA17_Chr5g0432401 41.887 265 89 5 6 249 13 233 4.62e-56 190
Msa0463950 MtrunA17_Chr2g0292291 42.345 307 150 4 276 555 26 332 1.40e-73 238
Msa0463950 MtrunA17_Chr2g0292291 38.585 311 151 5 25 309 29 325 1.41e-59 201
Msa0463950 MtrunA17_Chr2g0292101 40.673 327 167 5 255 555 1 326 3.80e-72 234
Msa0463950 MtrunA17_Chr2g0292101 43.629 259 121 3 16 249 15 273 1.44e-61 206
Msa0463950 MtrunA17_Chr5g0421411 43.617 282 130 6 303 555 4 285 7.26e-69 223
Msa0463950 MtrunA17_Chr5g0421411 45.089 224 97 4 53 250 8 231 1.54e-55 188
Msa0463950 MtrunA17_Chr7g0225221 38.199 322 176 5 255 555 1 320 3.89e-67 220
Msa0463950 MtrunA17_Chr7g0225221 39.286 252 130 4 20 249 19 269 5.91e-52 180
Msa0463950 MtrunA17_Chr1g0188431 41.497 294 149 6 280 555 39 327 5.96e-67 220
Msa0463950 MtrunA17_Chr1g0188431 36.981 265 141 7 5 250 20 277 1.27e-47 169
Msa0463950 MtrunA17_Chr6g0477071 39.375 320 170 8 255 555 28 342 9.02e-67 220
Msa0463950 MtrunA17_Chr6g0477071 37.643 263 140 7 6 249 34 291 1.49e-46 166
Msa0463950 MtrunA17_Chr3g0114491 84.298 121 19 0 14 134 6 126 7.59e-66 210
Msa0463950 MtrunA17_Chr3g0114491 80.165 121 23 1 269 389 7 126 2.04e-61 199
Msa0463950 MtrunA17_Chr4g0024121 39.130 322 168 5 259 555 8 326 1.49e-65 216
Msa0463950 MtrunA17_Chr4g0024121 38.628 277 137 6 5 253 8 279 1.64e-48 171
Msa0463950 MtrunA17_Chr2g0322861 39.628 323 163 7 259 555 70 386 2.09e-64 215
Msa0463950 MtrunA17_Chr2g0322861 38.376 271 135 7 5 249 70 334 4.95e-49 174
Msa0463950 MtrunA17_Chr1g0204011 38.438 320 162 7 260 555 14 322 4.74e-64 212
Msa0463950 MtrunA17_Chr1g0204011 39.427 279 131 9 6 258 14 280 1.21e-50 176
Msa0463950 MtrunA17_Chr7g0268501 37.538 325 174 6 255 555 1 320 4.74e-63 209
Msa0463950 MtrunA17_Chr7g0268501 36.029 272 149 4 1 249 1 270 4.34e-47 167
Msa0463950 MtrunA17_Chr7g0268521 37.538 325 174 6 255 555 1 320 4.74e-63 209
Msa0463950 MtrunA17_Chr7g0268521 36.029 272 149 4 1 249 1 270 4.34e-47 167
Msa0463950 MtrunA17_Chr1g0157051 38.801 317 158 8 260 551 9 314 2.04e-62 207
Msa0463950 MtrunA17_Chr1g0157051 34.125 337 169 10 6 316 9 318 8.81e-50 174
Msa0463950 MtrunA17_Chr3g0128061 38.111 307 165 3 274 555 20 326 2.82e-62 207
Msa0463950 MtrunA17_Chr3g0128061 37.818 275 142 5 6 253 8 280 2.27e-49 173
Msa0463950 MtrunA17_Chr5g0405991 39.329 328 160 10 255 555 1 316 1.91e-61 205
Msa0463950 MtrunA17_Chr5g0405991 37.319 276 141 9 1 250 1 270 2.32e-45 162
Msa0463950 MtrunA17_Chr7g0254201 37.584 298 159 5 280 555 20 312 3.84e-60 201
Msa0463950 MtrunA17_Chr7g0254201 38.057 247 123 6 25 248 21 260 6.13e-47 166
Msa0463950 MtrunA17_Chr8g0371381 39.274 303 148 8 280 555 26 319 6.48e-60 201
Msa0463950 MtrunA17_Chr8g0371381 37.154 253 130 6 24 250 24 273 4.60e-46 164
Msa0463950 MtrunA17_Chr1g0164891 38.667 300 156 4 284 555 93 392 9.38e-59 200
Msa0463950 MtrunA17_Chr1g0164891 41.365 249 117 5 30 249 93 341 1.97e-50 178
Msa0463950 MtrunA17_Chr1g0194151 36.137 321 177 3 263 555 13 333 7.91e-58 196
Msa0463950 MtrunA17_Chr1g0194151 35.145 276 147 4 6 252 13 285 3.26e-47 167
Msa0463950 MtrunA17_Chr6g0460711 36.120 299 165 5 279 555 20 314 1.27e-57 195
Msa0463950 MtrunA17_Chr6g0460711 36.842 247 129 5 25 248 20 262 2.15e-47 168
Msa0463950 MtrunA17_Chr2g0279041 35.976 328 177 6 256 555 3 325 9.14e-57 193
Msa0463950 MtrunA17_Chr2g0279041 36.296 270 139 6 6 250 10 271 1.51e-44 160
Msa0463950 MtrunA17_Chr1g0148021 37.879 330 174 7 255 555 1 328 1.80e-56 192
Msa0463950 MtrunA17_Chr1g0148021 38.340 253 127 5 25 249 26 277 7.93e-43 155
Msa0463950 MtrunA17_Chr4g0063671 36.928 306 159 5 279 555 20 320 1.72e-55 189
Msa0463950 MtrunA17_Chr4g0063671 37.450 251 127 4 25 250 20 265 6.20e-43 155
Msa0463950 MtrunA17_Chr6g0467251 35.669 314 181 5 257 551 13 324 5.05e-55 189
Msa0463950 MtrunA17_Chr6g0467251 36.604 265 144 6 6 248 14 276 1.79e-43 158
Msa0463950 MtrunA17_Chr2g0296621 38.585 311 157 9 270 555 40 341 6.31e-55 189
Msa0463950 MtrunA17_Chr2g0296621 38.846 260 126 7 16 250 40 291 1.35e-46 166
Msa0463950 MtrunA17_Chr6g0467161 34.650 329 191 6 247 555 12 336 2.80e-54 187
Msa0463950 MtrunA17_Chr6g0467161 35.766 274 147 7 2 250 17 286 8.32e-42 153
Msa0463950 MtrunA17_Chr1g0194271 34.756 328 179 3 263 555 13 340 1.96e-53 184
Msa0463950 MtrunA17_Chr1g0194271 33.922 283 148 4 6 252 13 292 1.37e-43 158
Msa0463950 MtrunA17_Chr7g0254231 36.735 294 164 5 280 555 22 311 2.15e-53 184
Msa0463950 MtrunA17_Chr7g0254231 37.037 243 130 5 25 248 21 259 4.33e-42 153
Msa0463950 MtrunA17_Chr4g0076211 38.514 296 149 7 285 555 46 333 1.93e-52 182
Msa0463950 MtrunA17_Chr4g0076211 38.367 245 118 6 31 250 46 282 4.91e-42 154
Msa0463950 MtrunA17_Chr6g0451571 34.161 322 183 6 259 555 17 334 3.69e-52 181
Msa0463950 MtrunA17_Chr6g0451571 32.721 272 153 6 5 250 17 284 4.24e-38 143
Msa0463950 MtrunA17_Chr4g0046131 36.964 303 162 6 278 551 40 342 7.41e-52 181
Msa0463950 MtrunA17_Chr4g0046131 35.827 254 134 5 24 248 40 293 1.33e-40 150
Msa0463950 MtrunA17_Chr8g0364291 34.462 325 182 6 257 555 5 324 1.42e-50 176
Msa0463950 MtrunA17_Chr8g0364291 33.200 250 140 4 23 245 20 269 6.79e-38 142
Msa0463950 MtrunA17_Chr4g0075241 31.429 315 193 3 264 555 13 327 4.49e-50 175
Msa0463950 MtrunA17_Chr4g0075241 30.970 268 159 4 6 248 9 275 1.91e-38 144
Msa0463950 MtrunA17_Chr4g0053871 35.593 295 168 4 279 551 26 320 8.42e-50 174
Msa0463950 MtrunA17_Chr4g0053871 37.200 250 130 5 25 249 26 273 2.42e-41 151
Msa0463950 MtrunA17_Chr5g0413051 36.893 309 164 9 277 555 70 377 8.89e-50 176
Msa0463950 MtrunA17_Chr5g0413051 35.907 259 134 8 23 250 70 327 2.12e-34 134
Msa0463950 MtrunA17_Chr1g0197411 32.219 329 194 6 254 555 4 330 2.13e-49 174
Msa0463950 MtrunA17_Chr1g0197411 30.072 276 161 6 1 248 7 278 1.14e-34 133
Msa0463950 MtrunA17_Chr5g0401431 35.644 303 168 5 279 554 26 328 4.81e-49 172
Msa0463950 MtrunA17_Chr5g0401431 36.364 253 133 5 25 249 26 278 1.18e-40 150
Msa0463950 MtrunA17_Chr2g0278671 35.065 308 168 6 276 555 20 323 5.82e-47 167
Msa0463950 MtrunA17_Chr2g0278671 35.227 264 140 6 23 259 21 280 4.21e-38 142
Msa0463950 MtrunA17_Chr6g0467121 33.438 320 189 6 255 555 49 363 8.14e-47 168
Msa0463950 MtrunA17_Chr6g0467121 35.165 273 144 8 4 248 44 311 8.07e-37 140
Msa0463950 MtrunA17_Chr4g0072091 35.548 301 170 4 279 555 23 323 2.00e-46 165
Msa0463950 MtrunA17_Chr4g0072091 36.800 250 133 5 25 249 23 272 2.25e-36 138
Msa0463950 MtrunA17_Chr1g0181511 32.781 302 180 4 276 555 23 323 2.61e-46 165
Msa0463950 MtrunA17_Chr1g0181511 31.600 250 147 4 22 248 23 271 3.35e-34 132
Msa0463950 MtrunA17_Chr3g0136751 33.125 320 184 3 262 555 7 322 1.52e-45 163
Msa0463950 MtrunA17_Chr3g0136751 31.481 270 154 3 8 250 7 272 1.43e-30 122
Msa0463950 MtrunA17_Chr1g0181481 32.781 302 180 5 276 555 23 323 1.47e-43 157
Msa0463950 MtrunA17_Chr1g0181481 32.800 250 144 5 22 248 23 271 2.84e-33 129
Msa0463950 MtrunA17_Chr2g0329641 31.661 319 182 6 266 555 24 335 2.36e-43 157
Msa0463950 MtrunA17_Chr2g0329641 30.739 257 143 5 23 249 33 284 4.06e-29 118
Msa0463950 MtrunA17_Chr1g0181431 32.776 299 178 6 279 555 26 323 3.92e-43 156
Msa0463950 MtrunA17_Chr1g0181431 32.000 250 146 5 22 248 23 271 2.99e-33 129
Msa0463950 MtrunA17_Chr2g0316481 31.212 330 172 6 280 554 76 405 6.79e-43 158
Msa0463950 MtrunA17_Chr2g0316481 29.682 283 143 6 21 248 72 353 5.40e-28 116
Msa0463950 MtrunA17_Chr2g0316791 30.606 330 174 6 280 554 76 405 4.61e-42 155
Msa0463950 MtrunA17_Chr2g0316791 28.975 283 145 6 21 248 72 353 5.26e-27 113
Msa0463950 MtrunA17_Chr2g0316831 30.909 330 173 6 280 554 112 441 8.84e-42 155
Msa0463950 MtrunA17_Chr2g0316831 28.975 283 145 6 21 248 108 389 3.25e-27 114
Msa0463950 MtrunA17_Chr2g0316191 30.514 331 174 6 280 554 76 406 2.06e-41 154
Msa0463950 MtrunA17_Chr2g0316191 28.521 284 146 6 21 248 72 354 1.92e-26 111
Msa0463950 MtrunA17_Chr2g0279061 37.308 260 130 6 324 555 12 266 4.97e-41 149
Msa0463950 MtrunA17_Chr2g0279061 36.893 206 100 5 70 250 12 212 4.43e-30 119
Msa0463950 MtrunA17_Chr4g0074851 31.790 324 183 8 260 551 7 324 2.96e-39 146
Msa0463950 MtrunA17_Chr4g0074851 30.496 282 145 8 6 248 7 276 2.67e-26 109
Msa0463950 MtrunA17_Chr2g0311251 31.532 333 166 10 280 554 11 339 2.01e-38 144
Msa0463950 MtrunA17_Chr2g0311251 28.571 287 142 9 21 249 7 288 4.20e-23 100
Msa0463950 MtrunA17_Chr2g0292281 41.053 190 93 5 375 555 37 216 5.90e-37 137
Msa0463950 MtrunA17_Chr2g0292281 34.518 197 98 5 120 309 37 209 5.00e-24 101
Msa0463950 MtrunA17_Chr5g0432321 51.282 117 56 1 129 245 17 132 1.42e-32 121
Msa0463950 MtrunA17_Chr5g0432321 52.137 117 55 1 384 500 17 132 3.10e-32 120
Msa0463950 MtrunA17_Chr4g0004591 26.332 319 151 6 280 554 77 355 7.67e-28 114
Msa0463950 MtrunA17_Chr4g0004591 26.400 250 136 5 26 248 77 305 5.56e-16 79.7
Msa0463950 MtrunA17_Chr2g0316141 30.337 267 148 7 326 554 11 277 2.89e-25 105
Msa0463950 MtrunA17_Chr2g0316181 30.337 267 148 7 326 554 11 277 2.89e-25 105
Msa0463950 MtrunA17_Chr2g0316811 37.126 167 87 2 280 428 50 216 1.04e-24 105
Msa0463950 MtrunA17_Chr2g0316811 35.465 172 91 3 21 173 46 216 3.03e-22 98.2
Msa0463950 MtrunA17_Chr1g0181501 33.511 188 119 4 373 555 3 189 1.28e-23 98.6
Msa0463950 MtrunA17_Chr1g0181501 33.088 136 85 4 118 248 3 137 3.51e-13 68.6
Msa0463950 MtrunA17_Chr3g0104101 40.426 141 72 5 427 555 9 149 3.01e-21 90.5
Msa0463950 MtrunA17_Chr2g0311241 28.829 222 121 5 370 554 208 429 7.91e-20 92.0
Msa0463950 MtrunA17_Chr2g0311241 43.119 109 59 2 280 388 60 165 1.22e-18 88.6
Msa0463950 MtrunA17_Chr2g0311241 41.593 113 63 2 21 133 56 165 3.37e-18 87.4
Msa0463950 MtrunA17_Chr5g0432361 45.161 93 48 2 464 554 17 108 5.25e-19 82.8
Msa0463950 MtrunA17_Chr4g0013811 52.055 73 35 0 374 446 6 78 1.82e-18 80.1
Msa0463950 MtrunA17_Chr4g0013811 49.333 75 38 0 117 191 4 78 1.59e-17 77.4
Msa0463950 MtrunA17_Chr1g0181491 37.838 111 67 2 23 133 9 117 8.92e-15 72.0
Msa0463950 MtrunA17_Chr1g0181491 36.607 112 68 3 277 388 9 117 4.16e-13 67.0
Msa0463950 MtrunA17_Chr4g0037131 29.150 247 114 8 314 537 35 243 3.02e-14 73.6
Msa0463950 MtrunA17_Chr7g0268491 40.964 83 48 1 473 555 16 97 2.20e-12 63.5
Msa0463950 MtrunA17_Chr6g0468731 51.429 70 29 3 319 388 22 86 3.40e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0463950 AT5G05340.1 55.184 299 113 3 277 555 27 324 3.31e-109 329
Msa0463950 AT5G05340.1 56.000 250 88 3 25 253 29 277 3.02e-89 278
Msa0463950 AT5G58400.1 49.848 329 140 4 247 555 2 325 3.24e-100 306
Msa0463950 AT5G58400.1 51.095 274 106 5 2 253 11 278 6.14e-76 243
Msa0463950 AT5G58390.1 51.402 321 131 5 255 555 1 316 2.27e-95 293
Msa0463950 AT5G58390.1 51.311 267 105 4 7 252 6 268 1.56e-73 237
Msa0463950 AT5G06720.1 49.068 322 137 5 260 555 13 333 2.70e-95 294
Msa0463950 AT5G06720.1 45.333 300 129 5 5 271 13 310 1.25e-73 238
Msa0463950 AT2G18140.1 46.386 332 151 4 251 555 4 335 3.20e-94 291
Msa0463950 AT2G18140.1 44.815 270 124 2 6 250 15 284 1.72e-71 232
Msa0463950 AT2G18150.1 45.946 333 152 4 251 555 4 336 7.90e-94 290
Msa0463950 AT2G18150.1 46.825 252 109 2 23 249 33 284 2.79e-70 229
Msa0463950 AT4G36430.1 49.007 302 129 3 279 555 29 330 1.05e-93 290
Msa0463950 AT4G36430.1 47.154 246 105 2 30 250 34 279 8.63e-70 228
Msa0463950 AT4G08770.1 49.836 305 125 4 279 555 23 327 1.95e-91 285
Msa0463950 AT4G08770.1 50.397 252 99 4 25 250 23 274 9.29e-72 233
Msa0463950 AT3G32980.1 49.216 319 130 6 265 555 20 334 9.20e-91 283
Msa0463950 AT3G32980.1 49.248 266 105 5 11 250 20 281 2.59e-72 235
Msa0463950 AT5G06730.1 44.582 323 152 5 259 555 13 334 8.34e-90 281
Msa0463950 AT5G06730.1 43.750 272 126 4 3 249 12 281 9.98e-71 231
Msa0463950 AT2G38380.1 46.154 312 141 4 271 555 22 333 1.06e-88 278
Msa0463950 AT2G38380.1 47.619 252 106 3 25 250 30 281 3.81e-68 224
Msa0463950 AT2G38390.1 45.141 319 148 4 264 555 15 333 1.80e-88 277
Msa0463950 AT2G38390.1 45.318 267 120 3 10 250 15 281 1.15e-69 228
Msa0463950 AT3G49110.1 46.605 324 145 5 260 555 13 336 1.45e-87 275
Msa0463950 AT3G49110.1 50.000 252 100 4 25 250 32 283 6.07e-71 231
Msa0463950 AT4G08780.1 47.213 305 133 4 279 555 23 327 2.58e-86 271
Msa0463950 AT4G08780.1 47.619 252 106 3 25 250 23 274 1.21e-68 225
Msa0463950 AT5G66390.1 47.651 298 131 3 283 555 36 333 1.97e-85 268
Msa0463950 AT5G66390.1 46.988 249 107 2 26 249 33 281 4.98e-68 223
Msa0463950 AT3G49120.1 48.525 305 129 5 279 555 31 335 5.13e-85 268
Msa0463950 AT3G49120.1 49.206 252 102 4 25 250 31 282 1.87e-68 225
Msa0463950 AT3G50990.1 47.841 301 132 3 280 555 41 341 7.00e-85 267
Msa0463950 AT3G50990.1 46.565 262 112 4 26 259 41 302 1.83e-66 219
Msa0463950 AT1G44970.1 49.833 299 124 3 283 555 48 346 1.24e-84 267
Msa0463950 AT1G44970.1 48.031 254 105 3 26 252 45 298 1.09e-64 215
Msa0463950 AT1G14550.1 45.283 318 153 5 259 555 4 321 7.27e-83 261
Msa0463950 AT1G14550.1 43.123 269 129 4 4 252 8 272 1.57e-63 211
Msa0463950 AT1G14540.1 43.038 316 157 4 259 555 4 315 1.40e-82 260
Msa0463950 AT1G14540.1 42.751 269 131 3 3 252 2 266 2.44e-66 218
Msa0463950 AT2G22420.1 44.595 296 137 4 284 555 27 319 2.48e-80 255
Msa0463950 AT2G22420.1 42.279 272 122 4 4 250 10 271 1.62e-63 211
Msa0463950 AT5G19890.1 45.603 307 133 6 277 555 27 327 4.43e-79 252
Msa0463950 AT5G19890.1 47.431 253 104 4 23 250 27 275 2.29e-66 219
Msa0463950 AT4G16270.1 46.801 297 131 4 284 555 54 348 4.30e-78 250
Msa0463950 AT4G16270.1 44.528 265 110 3 21 248 33 297 3.62e-63 211
Msa0463950 AT2G35380.1 44.037 327 153 3 259 555 9 335 3.15e-77 247
Msa0463950 AT2G35380.1 46.324 272 118 3 5 248 9 280 9.61e-65 214
Msa0463950 AT1G49570.1 45.085 295 135 4 284 551 52 346 1.34e-73 238
Msa0463950 AT1G49570.1 46.154 247 105 4 30 248 52 298 2.91e-61 206
Msa0463950 AT1G68850.1 40.541 333 159 9 261 555 4 335 4.24e-71 231
Msa0463950 AT1G68850.1 41.502 253 119 5 26 250 30 281 1.16e-56 193
Msa0463950 AT5G19880.1 40.196 306 154 4 279 555 24 329 9.64e-70 228
Msa0463950 AT5G19880.1 40.157 254 124 3 25 250 24 277 4.91e-52 181
Msa0463950 AT4G33420.1 41.892 296 149 6 278 555 35 325 2.85e-66 218
Msa0463950 AT4G33420.1 41.393 244 119 6 26 250 37 275 2.21e-49 174
Msa0463950 AT4G33420.2 41.892 296 149 6 278 555 82 372 1.06e-65 218
Msa0463950 AT4G33420.2 41.393 244 119 6 26 250 84 322 7.53e-49 174
Msa0463950 AT3G03670.1 38.438 320 164 4 260 555 11 321 3.67e-65 215
Msa0463950 AT3G03670.1 38.462 247 126 3 25 246 22 267 8.11e-49 172
Msa0463950 AT2G41480.1 35.629 334 180 6 251 555 1 328 4.21e-62 207
Msa0463950 AT2G41480.1 35.273 275 147 5 1 250 5 273 6.04e-46 164
Msa0463950 AT5G51890.1 39.009 323 162 9 259 555 9 322 1.76e-61 206
Msa0463950 AT5G51890.1 38.971 272 132 8 5 249 9 273 7.35e-49 172
Msa0463950 AT5G17820.1 36.890 328 165 7 252 555 4 313 3.32e-61 204
Msa0463950 AT5G17820.1 36.145 249 124 6 25 248 23 261 4.29e-42 154
Msa0463950 AT1G71695.1 37.500 312 172 6 262 551 25 335 4.15e-61 206
Msa0463950 AT1G71695.1 36.992 246 132 5 26 249 44 288 1.75e-47 169
Msa0463950 AT5G42180.1 39.404 302 152 8 278 554 21 316 1.51e-60 203
Msa0463950 AT5G42180.1 36.765 272 138 8 6 251 8 271 9.42e-45 161
Msa0463950 AT5G15180.1 36.196 326 179 6 255 555 8 329 3.37e-60 202
Msa0463950 AT5G15180.1 34.657 277 148 6 1 250 8 278 3.87e-44 159
Msa0463950 AT5G17820.2 37.195 328 164 7 252 555 57 366 3.81e-60 203
Msa0463950 AT5G17820.2 36.546 249 123 6 25 248 76 314 3.18e-41 152
Msa0463950 AT3G21770.1 39.474 304 152 8 276 551 25 324 3.61e-59 200
Msa0463950 AT3G21770.1 37.698 252 125 7 25 248 28 275 4.21e-45 162
Msa0463950 AT4G11290.1 37.383 321 173 5 261 555 8 326 6.63e-59 199
Msa0463950 AT4G11290.1 35.821 268 144 4 7 248 8 273 1.10e-45 164
Msa0463950 AT3G01190.1 38.750 320 161 8 261 555 12 321 9.04e-59 198
Msa0463950 AT3G01190.1 37.175 269 134 7 7 250 12 270 1.46e-44 160
Msa0463950 AT5G64120.1 34.259 324 185 5 255 555 10 328 1.37e-58 198
Msa0463950 AT5G64120.1 34.586 266 145 5 8 249 17 277 1.12e-43 158
Msa0463950 AT5G40150.1 37.209 301 168 4 276 555 28 328 2.27e-58 197
Msa0463950 AT5G40150.1 35.458 251 140 4 22 250 28 278 8.55e-46 164
Msa0463950 AT1G05240.1 37.458 299 157 5 280 551 26 321 1.82e-57 195
Msa0463950 AT1G05240.1 36.400 250 131 4 26 250 26 272 1.39e-45 163
Msa0463950 AT1G05250.1 37.458 299 157 5 280 551 26 321 1.82e-57 195
Msa0463950 AT1G05250.1 36.400 250 131 4 26 250 26 272 1.39e-45 163
Msa0463950 AT1G05260.1 37.049 305 164 5 277 555 23 325 3.06e-56 192
Msa0463950 AT1G05260.1 36.800 250 130 4 25 248 25 272 1.19e-44 161
Msa0463950 AT4G26010.1 36.306 314 170 7 260 555 8 309 5.13e-56 191
Msa0463950 AT4G26010.1 33.206 262 144 7 6 248 8 257 1.60e-38 144
Msa0463950 AT4G26010.2 36.306 314 170 7 260 555 36 337 9.97e-56 191
Msa0463950 AT4G26010.2 33.206 262 144 7 6 248 36 285 3.30e-38 144
Msa0463950 AT2G35380.2 43.902 246 108 3 340 555 2 247 3.57e-54 184
Msa0463950 AT2G35380.2 46.597 191 74 3 86 248 2 192 3.60e-42 152
Msa0463950 AT5G14130.1 34.268 321 177 6 260 555 19 330 6.40e-54 186
Msa0463950 AT5G14130.1 34.926 272 145 6 5 250 15 280 5.56e-44 159
Msa0463950 AT5G14130.2 34.268 321 177 6 260 555 60 371 2.22e-53 186
Msa0463950 AT5G14130.2 34.926 272 145 6 5 250 56 321 1.41e-43 159
Msa0463950 AT4G37530.1 36.513 304 166 5 279 555 26 329 4.23e-53 184
Msa0463950 AT4G37530.1 36.759 253 132 5 25 249 26 278 6.21e-43 156
Msa0463950 AT1G24110.1 34.356 326 185 5 255 555 1 322 9.06e-53 182
Msa0463950 AT1G24110.1 32.117 274 156 5 1 248 1 270 2.98e-39 146
Msa0463950 AT3G28200.1 34.667 300 176 4 276 555 17 316 2.73e-52 181
Msa0463950 AT3G28200.1 33.200 250 146 4 22 250 17 266 2.04e-41 152
Msa0463950 AT4G30170.1 35.333 300 171 3 279 555 26 325 2.77e-51 179
Msa0463950 AT4G30170.1 37.349 249 132 5 25 249 26 274 1.96e-40 149
Msa0463950 AT2G18980.1 35.220 318 177 4 261 555 12 323 4.74e-51 178
Msa0463950 AT2G18980.1 36.029 272 136 6 7 250 12 273 1.10e-40 150
Msa0463950 AT5G39580.1 36.486 296 159 6 284 555 29 319 5.36e-51 178
Msa0463950 AT5G39580.1 34.201 269 145 7 6 249 7 268 7.08e-37 139
Msa0463950 AT4G33870.1 31.977 344 172 6 270 553 58 399 1.08e-50 179
Msa0463950 AT4G33870.1 29.932 294 143 6 16 248 58 349 5.31e-35 136
Msa0463950 AT1G30870.1 37.294 303 155 8 280 555 51 345 1.92e-50 177
Msa0463950 AT1G30870.1 37.600 250 123 5 24 248 49 290 6.45e-42 154
Msa0463950 AT5G47000.1 33.125 320 189 6 259 555 13 330 3.42e-50 176
Msa0463950 AT5G47000.1 33.582 268 152 6 5 248 13 278 5.52e-38 143
Msa0463950 AT1G34510.1 32.698 315 182 7 259 555 7 309 1.11e-49 174
Msa0463950 AT1G34510.1 31.618 272 154 7 1 253 4 262 1.01e-35 136
Msa0463950 AT4G37520.2 35.216 301 171 5 279 555 26 326 1.21e-49 174
Msa0463950 AT4G37520.2 36.400 250 134 5 25 249 26 275 2.20e-41 152
Msa0463950 AT2G39040.1 35.556 315 172 5 271 555 37 350 1.22e-49 175
Msa0463950 AT2G39040.1 33.969 262 144 3 17 249 37 298 2.24e-36 139
Msa0463950 AT5G67400.1 33.739 329 190 5 255 555 1 329 1.54e-49 174
Msa0463950 AT5G67400.1 35.357 280 151 5 3 252 2 281 1.12e-41 153
Msa0463950 AT4G37520.1 34.868 304 171 5 279 555 26 329 4.28e-49 173
Msa0463950 AT4G37520.1 35.968 253 134 5 25 249 26 278 7.14e-41 150
Msa0463950 AT4G25980.1 34.426 305 167 6 280 555 26 326 7.04e-48 169
Msa0463950 AT4G25980.1 33.600 250 137 5 26 250 26 271 7.96e-37 139
Msa0463950 AT2G34060.1 35.191 341 181 10 251 552 4 343 9.01e-48 170
Msa0463950 AT2G34060.1 37.891 256 128 7 24 249 40 294 2.05e-38 144
Msa0463950 AT1G77100.1 35.667 300 167 6 279 555 23 319 9.64e-48 169
Msa0463950 AT1G77100.1 33.808 281 158 7 1 258 1 276 1.27e-37 141
Msa0463950 AT5G64100.1 33.333 339 180 8 255 555 1 331 7.69e-47 167
Msa0463950 AT5G64100.1 34.146 246 129 6 30 250 41 278 1.15e-34 134
Msa0463950 AT3G49960.1 33.739 329 190 7 255 555 1 329 1.90e-46 166
Msa0463950 AT3G49960.1 36.719 256 134 6 25 252 26 281 1.44e-39 147
Msa0463950 AT4G21960.1 35.110 319 172 8 262 551 11 323 2.20e-46 166
Msa0463950 AT4G21960.1 32.472 271 147 8 8 248 11 275 1.71e-29 119
Msa0463950 AT5G64110.1 34.663 326 179 7 258 555 11 330 3.92e-46 165
Msa0463950 AT5G64110.1 36.032 247 127 5 28 249 36 276 1.01e-36 139
Msa0463950 AT4G31760.1 33.735 332 183 6 255 555 1 326 1.57e-45 163
Msa0463950 AT4G31760.1 34.661 251 133 4 26 249 29 275 6.63e-33 129
Msa0463950 AT4G37530.2 36.759 253 132 5 25 249 26 278 1.47e-43 157
Msa0463950 AT4G37530.2 37.154 253 132 5 279 504 26 278 1.76e-43 156
Msa0463950 AT4G17690.1 33.221 298 176 5 280 555 26 322 1.65e-43 158
Msa0463950 AT4G17690.1 33.603 247 140 5 26 249 26 271 4.89e-33 129
Msa0463950 AT2G37130.1 33.333 300 176 5 279 555 29 327 2.93e-43 157
Msa0463950 AT2G37130.1 32.669 251 144 5 22 248 26 275 2.12e-31 124
Msa0463950 AT2G24800.1 33.981 309 163 5 279 555 30 329 3.73e-43 157
Msa0463950 AT2G24800.1 34.884 258 126 5 25 249 30 278 6.79e-33 129
Msa0463950 AT2G37130.2 33.446 296 173 5 283 555 2 296 4.19e-43 156
Msa0463950 AT2G37130.2 32.377 244 140 5 29 248 2 244 5.61e-30 119
Msa0463950 AT3G17070.1 30.838 334 201 6 251 555 7 339 9.76e-41 150
Msa0463950 AT3G17070.1 32.130 277 157 7 2 248 12 287 5.12e-31 124
Msa0463950 AT5G22410.1 33.443 305 163 10 279 552 27 322 2.60e-40 149
Msa0463950 AT5G22410.1 33.858 254 135 7 22 248 26 273 6.16e-35 134
Msa0463950 AT5G24070.1 31.548 336 185 10 259 555 6 335 3.45e-38 144
Msa0463950 AT5G24070.1 31.071 280 152 10 6 250 12 285 1.19e-26 111
Msa0463950 AT2G43480.1 29.063 320 190 6 267 555 22 335 8.51e-38 142
Msa0463950 AT2G43480.1 26.552 290 166 7 1 249 1 284 2.52e-25 107
Msa0463950 AT3G17070.2 32.184 261 148 6 322 555 18 276 1.47e-31 124
Msa0463950 AT3G17070.2 31.579 209 113 6 68 248 18 224 3.98e-20 91.3
Msa0463950 AT4G25980.2 38.690 168 82 4 280 430 71 234 6.14e-27 110
Msa0463950 AT4G25980.2 35.714 168 86 4 26 175 71 234 2.82e-23 100
Msa0463950 AT5G39580.2 34.518 197 103 5 284 463 29 216 2.35e-26 108
Msa0463950 AT5G39580.2 31.674 221 122 6 6 208 7 216 1.28e-24 103
Msa0463950 AT2G24800.2 34.731 167 87 2 25 173 30 192 5.15e-19 87.0
Msa0463950 AT2G24800.2 34.132 167 89 2 279 428 30 192 1.13e-18 86.3

Find 127 sgRNAs with CRISPR-Local

Find 432 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACATTGTCATTTCCACTTC+TGG 0.104036 3_3:+63509195 None:intergenic
AACATTGTCGTTTCCACTTC+TGG 0.115473 3_3:+63504786 None:intergenic
GAGGACTTGGTGGCTCTTTC+AGG 0.143018 3_3:-63509467 Msa0463950:intron
AAGGACTTGGTGGCTCTTTC+AGG 0.146777 3_3:-63505051 Msa0463950:intron
AAATTCTCAATTTCCTAATT+AGG 0.159366 3_3:+63504234 None:intergenic
CAAGAATTTACTAGCTAAAA+AGG 0.215677 3_3:-63504713 Msa0463950:CDS
CCCTTGATTACAACCTAATT+AGG 0.219088 3_3:-63504247 Msa0463950:three_prime_UTR
TATGCGAGTTTCTTTCTTAA+TGG 0.222413 3_3:+63506030 None:intergenic
CAAGAATTTACTAGCTAAAA+AGG 0.225103 3_3:-63509122 Msa0463950:CDS
GACCAAGAGTTGTTCAATAT+TGG 0.252796 3_3:-63509085 Msa0463950:CDS
CTAGTAAATTCTTGAAGTAT+AGG 0.325478 3_3:+63504722 None:intergenic
CTAGTAAATTCTTGAAGTAT+AGG 0.325478 3_3:+63509131 None:intergenic
GGGTGCTGGAATTGAGTTAT+TGG 0.333191 3_3:+63509544 None:intergenic
GAGAGTGCTTAGATTCATAA+AGG 0.342825 3_3:+63505107 None:intergenic
GGGTGCAGGAATTGAGTTAT+TGG 0.349043 3_3:+63505128 None:intergenic
GATGATACAAGCAGTTTCAT+AGG 0.354533 3_3:-63505839 Msa0463950:CDS
GTGTGATGCATCAATACTTT+TGG 0.369922 3_3:-63505861 Msa0463950:CDS
TTCACTATAGACAACAGTTC+CGG 0.373371 3_3:+63510542 None:intergenic
TCCTAATTAGGTTGTAATCA+AGG 0.375001 3_3:+63504246 None:intergenic
TGGAAGCTCTACTGATAATC+TGG 0.379903 3_3:-63504659 Msa0463950:CDS
TACAGCTAGGAGGCCCTTCA+TGG 0.385396 3_3:-63505200 Msa0463950:intron
ACATTGTCATTTCCACTTCT+GGG 0.391311 3_3:+63509196 None:intergenic
ACATTGTCGTTTCCACTTCT+GGG 0.395378 3_3:+63504787 None:intergenic
TACAGCTAGGAGGCCCTTCA+TGG 0.398807 3_3:-63509616 Msa0463950:intron
AGTCCTTAGCTGAGAGGCCT+TGG 0.400121 3_3:+63505067 None:intergenic
TAATGGCATTTATGACTCCT+TGG 0.408894 3_3:+63506047 None:intergenic
CCAGCACCCTTTCTCAATCT+AGG 0.413027 3_3:-63509530 Msa0463950:CDS
GATGATACAAGCAGTTTCAT+AGG 0.416762 3_3:-63510315 Msa0463950:CDS
CCCTTCATGGGATGTAGGCT+TGG 0.421379 3_3:-63509603 Msa0463950:CDS
TTCCAATATTGAACAACTCT+TGG 0.421834 3_3:+63509083 None:intergenic
AGGGCTCTCAGTTGAGGACT+TGG 0.425051 3_3:-63509480 Msa0463950:CDS
TCAGCACAGGACACAACTCC+TGG 0.428583 3_3:+63505731 None:intergenic
TCCTCTAGCTGAATTATTGT+TGG 0.430062 3_3:+63510275 None:intergenic
GGGATTCAATCACAGCTAGT+AGG 0.433896 3_3:-63505158 Msa0463950:CDS
GGGATTCAATCACAGCTAGT+AGG 0.433896 3_3:-63509574 Msa0463950:CDS
CCCTTCATGGAATGTAGGCT+TGG 0.437782 3_3:-63505187 Msa0463950:CDS
CAAAATGAGTCGGTGTTTGA+TGG 0.444016 3_3:+63504749 None:intergenic
TCACTATAGACAACAGTTCC+GGG 0.444339 3_3:+63510543 None:intergenic
GGGATGTAGGCTTGGGAAGA+AGG 0.448719 3_3:-63509595 Msa0463950:CDS
GAGAGCACCTAGATTGAGAA+AGG 0.455148 3_3:+63509523 None:intergenic
CCTAATTAGGTTGTAATCAA+GGG 0.455422 3_3:+63504247 None:intergenic
TGAACAACTCTTGGTCTGAA+TGG 0.456022 3_3:+63509092 None:intergenic
TGTTCTCTATATAGCTTACA+TGG 0.456264 3_3:-63506194 Msa0463950:intron
TTCACTATAGACAACAGTTC+CGG 0.457196 3_3:+63506070 None:intergenic
CAGCAACAAGAACAAATAAG+AGG 0.458381 3_3:+63506158 None:intergenic
GGAATGTAGGCTTGGGAAGA+AGG 0.468250 3_3:-63505179 Msa0463950:CDS
TTGTCCATTGCTTCCTGTGA+GGG 0.470094 3_3:+63504558 None:intergenic
TAAAGCCTTTGCCAAGGGTA+TGG 0.475959 3_3:-63504602 Msa0463950:CDS
AAGCAACAAGAACAATTAAG+AGG 0.476569 3_3:+63510630 None:intergenic
ATATCAGGTGCACATACAAT+TGG 0.478538 3_3:-63509307 Msa0463950:intron
AGAGTGCTTAGATTCATAAA+GGG 0.480504 3_3:+63505108 None:intergenic
GGTTCTTCTCCATTCAGATC+AGG 0.483284 3_3:-63504692 Msa0463950:CDS
CCTTCATGGGATGTAGGCTT+GGG 0.484592 3_3:-63509602 Msa0463950:CDS
TGAATAGCTCCTGATCTGAA+TGG 0.484938 3_3:+63504683 None:intergenic
GCTCTCAGTTGAGGACTTGG+TGG 0.486682 3_3:-63509477 Msa0463950:CDS
TAAGAGCATTTACGACTCCT+TGG 0.486870 3_3:+63510519 None:intergenic
GCTAACAATAATTCAGCTAG+AGG 0.490703 3_3:-63505800 Msa0463950:CDS
ATAACAGGTGCACATACAAT+TGG 0.496578 3_3:-63504898 Msa0463950:intron
CCTTCATGGAATGTAGGCTT+GGG 0.499877 3_3:-63505186 Msa0463950:CDS
CTTCTACTGCAGCAGCTGTC+CGG 0.501343 3_3:-63506089 Msa0463950:CDS
CCTCTCAGCTAAGGACTTGG+TGG 0.509614 3_3:-63505061 Msa0463950:CDS
CAAAACAAGTGCCCCAGAAG+TGG 0.514491 3_3:-63504799 Msa0463950:CDS
CAAAACAAGTGCCCCAGAAG+TGG 0.514491 3_3:-63509208 Msa0463950:CDS
GGAGGCCCTTCATGGGATGT+AGG 0.516630 3_3:-63509608 Msa0463950:CDS
AGGCCTCTCAGCTAAGGACT+TGG 0.517418 3_3:-63505064 Msa0463950:CDS
TCAGATCAGGAGCTATTCAA+TGG 0.519217 3_3:-63504679 Msa0463950:CDS
TTGTAGAGACTTTCTATACA+AGG 0.526476 3_3:+63504819 None:intergenic
CTTAGATTCATAAAGGGTGC+AGG 0.528162 3_3:+63505114 None:intergenic
CTTCTACTGCAGCAGCTGCC+CGG 0.529821 3_3:-63510561 Msa0463950:CDS
GGAGGCCCTTCATGGAATGT+AGG 0.532058 3_3:-63505192 Msa0463950:CDS
CCCAAGCCTACATTCCATGA+AGG 0.533028 3_3:+63505186 None:intergenic
AGTCCTCAACTGAGAGCCCT+TGG 0.538010 3_3:+63509483 None:intergenic
CCCAAGCCTACATCCCATGA+AGG 0.538878 3_3:+63509602 None:intergenic
GGGGCATGATTTCTCCACAC+TGG 0.540613 3_3:+63510227 None:intergenic
AGTCGGTGTTTGATGGTCGA+GGG 0.544407 3_3:+63504756 None:intergenic
GGATGTAGGCTTGGGAAGAA+GGG 0.547053 3_3:-63509594 Msa0463950:CDS
TCTATACAAGGGGTCGACAT+TGG 0.551386 3_3:+63504831 None:intergenic
GTTCTCTATAGCTTCTTACA+TGG 0.554349 3_3:-63510666 None:intergenic
CATTGTCGTTTCCACTTCTG+GGG 0.558904 3_3:+63504788 None:intergenic
TGTCCATTGCTTCCTGTGAG+GGG 0.559457 3_3:+63504559 None:intergenic
TTTGACCATACCCTTGGCAA+AGG 0.562288 3_3:+63504597 None:intergenic
CATTGTCATTTCCACTTCTG+GGG 0.563012 3_3:+63509197 None:intergenic
GGATTCAATCACAGCTAGTA+GGG 0.564451 3_3:-63505157 Msa0463950:CDS
GGATTCAATCACAGCTAGTA+GGG 0.564451 3_3:-63509573 Msa0463950:CDS
GAGTCGGTGTTTGATGGTCG+AGG 0.565121 3_3:+63504755 None:intergenic
CCTAGATTGAGAAAGGGTGC+TGG 0.565170 3_3:+63509530 None:intergenic
TCACGTTTACAAAGCAGTCA+TGG 0.565557 3_3:+63505981 None:intergenic
GATAGTGTAATTAATTGTGA+GGG 0.568742 3_3:-63504284 Msa0463950:three_prime_UTR
AAACCCCTCACAGGAAGCAA+TGG 0.570558 3_3:-63504562 Msa0463950:CDS
AGATAGTGTAATTAATTGTG+AGG 0.576546 3_3:-63504285 Msa0463950:three_prime_UTR
TAACCAAGGCCTCTCAGCTA+AGG 0.582422 3_3:-63505070 Msa0463950:CDS
TTGTAGAGACTTTCTAAACA+AGG 0.582654 3_3:+63509228 None:intergenic
AGTAGCATCAAACCCCTCAC+AGG 0.582667 3_3:-63504571 Msa0463950:CDS
TGTAGAGACTTTCTATACAA+GGG 0.584213 3_3:+63504820 None:intergenic
TGTAGAGACTTTCTAAACAA+GGG 0.584213 3_3:+63509229 None:intergenic
AGTCGGTGTTTGATAGTCGA+GGG 0.584764 3_3:+63509165 None:intergenic
GAATGTAGGCTTGGGAAGAA+GGG 0.585276 3_3:-63505178 Msa0463950:CDS
CTGCTGCAGTAGAAGTCTGT+AGG 0.587539 3_3:+63506097 None:intergenic
AGAGCACCTAGATTGAGAAA+GGG 0.588529 3_3:+63509524 None:intergenic
CTGTGACGCATCGATTCTGT+TGG 0.589559 3_3:-63510337 Msa0463950:CDS
ACAGCTAGGAGGCCCTTCAT+GGG 0.592407 3_3:-63509615 Msa0463950:intron
TAACCAAGGGCTCTCAGTTG+AGG 0.592954 3_3:-63509486 Msa0463950:CDS
GTAGAGACTTTCTATACAAG+GGG 0.593968 3_3:+63504821 None:intergenic
GTAGAGACTTTCTAAACAAG+GGG 0.593968 3_3:+63509230 None:intergenic
GCCAACAATAATTCAGCTAG+AGG 0.597481 3_3:-63510276 Msa0463950:CDS
CCAAGCCTACATTCCATGAA+GGG 0.598974 3_3:+63505187 None:intergenic
TGTTGGAATTTACAGCTAGG+AGG 0.611020 3_3:-63505210 Msa0463950:intron
TGTTGGAATTTACAGCTAGG+AGG 0.611020 3_3:-63509626 Msa0463950:intron
TTTGTCCATTGCTTCCTGTG+AGG 0.611149 3_3:+63504557 None:intergenic
CCAAGCCTACATCCCATGAA+GGG 0.612588 3_3:+63509603 None:intergenic
TCACATTTACAAAGCAGTCG+TGG 0.627284 3_3:+63510453 None:intergenic
TCTGCAATATCTGAAGCAGA+TGG 0.628991 3_3:-63510605 Msa0463950:CDS
CAGCACAGGACACAACTCCT+GGG 0.631159 3_3:+63505732 None:intergenic
GTCGGTGTTTGATGGTCGAG+GGG 0.631377 3_3:+63504757 None:intergenic
CTAACAATAATTCAGCTAGA+GGG 0.637728 3_3:-63505799 Msa0463950:CDS
CCACCAAGTCCTTAGCTGAG+AGG 0.638173 3_3:+63505061 None:intergenic
TCTAAACAAGGGGTCAACGT+TGG 0.638866 3_3:+63509240 None:intergenic
GAGTCGGTGTTTGATAGTCG+AGG 0.639212 3_3:+63509164 None:intergenic
TATAGGTTATCAAAATGAGT+CGG 0.643577 3_3:+63504739 None:intergenic
GTCGGTGTTTGATAGTCGAG+GGG 0.646321 3_3:+63509166 None:intergenic
ATTAAGAAAGAAACTCGCAT+AGG 0.651906 3_3:-63506028 Msa0463950:CDS
TATAGGTTATCGAAATGAGT+CGG 0.655911 3_3:+63509148 None:intergenic
TGTGGAGAAATCATGCCCCA+AGG 0.668608 3_3:-63510223 Msa0463950:intron
CTGTTGTCTATAGTGAACCA+AGG 0.680644 3_3:-63506064 Msa0463950:CDS
CTGTTGTCTATAGTGAACCA+AGG 0.680644 3_3:-63510536 Msa0463950:CDS
TGATGACATCAAAGCCAATG+TGG 0.696124 3_3:-63505765 Msa0463950:CDS
TGATGATATCAAAGCCAGTG+TGG 0.742684 3_3:-63510241 Msa0463950:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGTTAAAAAATATAACA+AGG - chr3_3:63504778-63504797 Msa0463950:CDS 10.0%
!!! TTCAAATAAACATAATTTTT+AGG - chr3_3:63504876-63504895 Msa0463950:CDS 10.0%
!! AGATTTAATTAATCTATAAA+GGG - chr3_3:63505174-63505193 Msa0463950:CDS 10.0%
!! ATGAATATGATTATATTATA+TGG + chr3_3:63507784-63507803 None:intergenic 10.0%
!! TGAATATAATAATAAACTAA+AGG + chr3_3:63508182-63508201 None:intergenic 10.0%
!!! TGGTTTATTTTATTTATAAA+GGG - chr3_3:63509590-63509609 Msa0463950:CDS 10.0%
!!! ACACATTTTAAATATTTATG+TGG - chr3_3:63504741-63504760 Msa0463950:CDS 15.0%
!! AATTAAATCTCTCTAATTAA+GGG + chr3_3:63505164-63505183 None:intergenic 15.0%
!! TAATTAAATCTCTCTAATTA+AGG + chr3_3:63505165-63505184 None:intergenic 15.0%
!! GAGATTTAATTAATCTATAA+AGG - chr3_3:63505173-63505192 Msa0463950:CDS 15.0%
!! AAAAATGATACAATATCATT+AGG + chr3_3:63506000-63506019 None:intergenic 15.0%
!!! ATATTGTATCATTTTTCATT+AGG - chr3_3:63506004-63506023 Msa0463950:CDS 15.0%
!! TAAGCAATATATATACTAAA+GGG - chr3_3:63506079-63506098 Msa0463950:CDS 15.0%
!! AATATGATTATATTATATGG+AGG + chr3_3:63507781-63507800 None:intergenic 15.0%
!!! GTGGTTTATTTTATTTATAA+AGG - chr3_3:63509589-63509608 Msa0463950:CDS 15.0%
!! TTTATTTATAAAGGGTTATA+TGG - chr3_3:63509598-63509617 Msa0463950:CDS 15.0%
!! AAAAAAGATACAATATCATT+AGG + chr3_3:63510406-63510425 None:intergenic 15.0%
!!! ATATTGTATCTTTTTTCATT+AGG - chr3_3:63510410-63510429 Msa0463950:intron 15.0%
!!! TCGTAGTTAATTTTGTTTTA+TGG + chr3_3:63504824-63504843 None:intergenic 20.0%
!! AATTATGTTTATTTGAACAC+TGG + chr3_3:63504873-63504892 None:intergenic 20.0%
!! GATGTTTAATGAATATAACA+AGG + chr3_3:63505018-63505037 None:intergenic 20.0%
!! TTAATCTATAAAGGGTTAAA+TGG - chr3_3:63505182-63505201 Msa0463950:CDS 20.0%
!!! AATCATGATAAAGCATTAAT+AGG + chr3_3:63505403-63505422 None:intergenic 20.0%
!! GTAAGCAATATATATACTAA+AGG - chr3_3:63506078-63506097 Msa0463950:CDS 20.0%
!! AAGCAATATATATACTAAAG+GGG - chr3_3:63506080-63506099 Msa0463950:CDS 20.0%
!! TAGGATCAATACTAAAAAAT+GGG + chr3_3:63506563-63506582 None:intergenic 20.0%
!! TTAGGATCAATACTAAAAAA+TGG + chr3_3:63506564-63506583 None:intergenic 20.0%
!! AAATTCTCAATTTCCTAATT+AGG + chr3_3:63507384-63507403 None:intergenic 20.0%
!! AAGATGTAAAAGTTTAACAA+AGG - chr3_3:63507455-63507474 Msa0463950:intron 20.0%
!! AGATGTAAAAGTTTAACAAA+GGG - chr3_3:63507456-63507475 Msa0463950:intron 20.0%
!!! TTTTGCTTTTATTATCCTAT+AGG + chr3_3:63507934-63507953 None:intergenic 20.0%
!! AATCAATATCATATTGTGAT+AGG + chr3_3:63508039-63508058 None:intergenic 20.0%
!!! AATATACCACAAGTTTTTTT+TGG - chr3_3:63508440-63508459 Msa0463950:intron 20.0%
!! TACGTAAAAGTAATTCAAAT+TGG - chr3_3:63508522-63508541 Msa0463950:intron 20.0%
!! AAGTAATTCAAATTGGATAT+TGG - chr3_3:63508529-63508548 Msa0463950:intron 20.0%
!! AACACAAAAATGAACAAAAT+TGG + chr3_3:63508622-63508641 None:intergenic 20.0%
!! TAGTTAACAAATATAACAGA+AGG - chr3_3:63509225-63509244 Msa0463950:CDS 20.0%
!! ATTTGAACACTTAAAAGTTA+TGG + chr3_3:63509299-63509318 None:intergenic 20.0%
!! GTATATTTGAATACAAATTG+TGG + chr3_3:63509339-63509358 None:intergenic 20.0%
!! TTTGTATTCAAATATACATC+TGG - chr3_3:63509342-63509361 Msa0463950:intron 20.0%
!! TATGGTATCATTATTCTATT+GGG + chr3_3:63509552-63509571 None:intergenic 20.0%
!!! AATCATGATAAAGCATTAAT+AGG + chr3_3:63505403-63505422 None:intergenic 20.0%
!!! AGAATTTTTGAATAAAGTTG+TGG + chr3_3:63509847-63509866 None:intergenic 20.0%
!! ATTCAAAAATTCTCAGAATA+TGG - chr3_3:63509854-63509873 Msa0463950:intron 20.0%
!!! CATAATTTTGAAAATGTAGA+TGG + chr3_3:63510383-63510402 None:intergenic 20.0%
!! GGTAAATAAATGTAAAAACA+TGG - chr3_3:63510431-63510450 Msa0463950:intron 20.0%
!! AAATTCTCAATTTCCTAATT+AGG + chr3_3:63507384-63507403 None:intergenic 20.0%
! CTTAAAAAAGAAACTCGAAT+AGG - chr3_3:63504332-63504351 Msa0463950:three_prime_UTR 25.0%
! ATTTAACGCAATGATCATTA+AGG - chr3_3:63504471-63504490 Msa0463950:three_prime_UTR 25.0%
! TTTAACGCAATGATCATTAA+GGG - chr3_3:63504472-63504491 Msa0463950:three_prime_UTR 25.0%
! AAATATACACTTGAAATTCG+TGG - chr3_3:63504955-63504974 Msa0463950:intron 25.0%
!! AAAACAAATTTTGCTAACCA+AGG - chr3_3:63505332-63505351 Msa0463950:intron 25.0%
!! AAACAAATTTTGCTAACCAA+GGG - chr3_3:63505333-63505352 Msa0463950:intron 25.0%
! AGAATTCTTGAATAAAGTTG+TGG + chr3_3:63505431-63505450 None:intergenic 25.0%
! AACTTTATTCAAGAATTCTC+TGG - chr3_3:63505432-63505451 Msa0463950:intron 25.0%
! TTGAGTATATCTTCAATATC+AGG - chr3_3:63505510-63505529 Msa0463950:intron 25.0%
! CTAGTAAATTCTTGAAGTAT+AGG + chr3_3:63505704-63505723 None:intergenic 25.0%
! CAAGAATTTACTAGCTAAAA+AGG - chr3_3:63505710-63505729 Msa0463950:intron 25.0%
!! ATTACTCACTAATTTTCAGT+TGG + chr3_3:63505916-63505935 None:intergenic 25.0%
! TTTACAATTTATCTGCATTC+AGG - chr3_3:63506488-63506507 Msa0463950:intron 25.0%
! TTACAATTTATCTGCATTCA+GGG - chr3_3:63506489-63506508 Msa0463950:intron 25.0%
! AGGATCAATACTAAAAAATG+GGG + chr3_3:63506562-63506581 None:intergenic 25.0%
! TTGCATACATTATCAATCTT+AGG + chr3_3:63506582-63506601 None:intergenic 25.0%
!!! ATTGAGAATTTTGAAGAGTA+TGG - chr3_3:63507393-63507412 Msa0463950:intron 25.0%
! ACAATCAATTAATGCATGTA+TGG - chr3_3:63507432-63507451 Msa0463950:intron 25.0%
!! TGGTTAGTTAAAGACAATTT+GGG - chr3_3:63507479-63507498 Msa0463950:intron 25.0%
! TTAAGAAGGATTAGACAATA+AGG - chr3_3:63507726-63507745 Msa0463950:intron 25.0%
!!! TAGCGACATTATTTTTTTGT+CGG - chr3_3:63508256-63508275 Msa0463950:intron 25.0%
! TTAAGGAAAAAAAACAATGC+TGG + chr3_3:63508352-63508371 None:intergenic 25.0%
!!! ACTATGCTAGTCTTTTTTTA+AGG + chr3_3:63508369-63508388 None:intergenic 25.0%
! TAATCACCAAAAAAAACTTG+TGG + chr3_3:63508449-63508468 None:intergenic 25.0%
! ATCAAATGATTAAAGTTGTG+TGG + chr3_3:63508477-63508496 None:intergenic 25.0%
! TATAGTACTAGTATACATGA+AGG + chr3_3:63508587-63508606 None:intergenic 25.0%
! TACTAGTACTATAAAAGAGA+AGG - chr3_3:63508594-63508613 Msa0463950:intron 25.0%
! TAATGATCATTGCGTTAAAT+GGG + chr3_3:63504471-63504490 None:intergenic 25.0%
! TTAATGATCATTGCGTTAAA+TGG + chr3_3:63504472-63504491 None:intergenic 25.0%
! ATTTAACGCAATGATCATTA+AGG - chr3_3:63504471-63504490 Msa0463950:three_prime_UTR 25.0%
! TTTAACGCAATGATCATTAA+GGG - chr3_3:63504472-63504491 Msa0463950:three_prime_UTR 25.0%
! AACAAAATTCAACAACAACT+TGG - chr3_3:63509184-63509203 Msa0463950:CDS 25.0%
! GTATGGTATCATTATTCTAT+TGG + chr3_3:63509553-63509572 None:intergenic 25.0%
!! AAAACAAATTTTGCTAACCA+AGG - chr3_3:63505332-63505351 Msa0463950:intron 25.0%
! AAGCATTAATAGGAATACTA+TGG + chr3_3:63505393-63505412 None:intergenic 25.0%
! TTGACTATATCTTGAATAAC+AGG - chr3_3:63509919-63509938 Msa0463950:intron 25.0%
! TATAGGTTATCAAAATGAGT+CGG + chr3_3:63510096-63510115 None:intergenic 25.0%
! CTAGTAAATTCTTGAAGTAT+AGG + chr3_3:63505704-63505723 None:intergenic 25.0%
! CAAGAATTTACTAGCTAAAA+AGG - chr3_3:63505710-63505729 Msa0463950:intron 25.0%
! ATAAATGTAAAAACATGGCA+AGG - chr3_3:63510436-63510455 Msa0463950:intron 25.0%
! AGATAGTGTAATTAATTGTG+AGG - chr3_3:63510547-63510566 Msa0463950:CDS 25.0%
! GATAGTGTAATTAATTGTGA+GGG - chr3_3:63510548-63510567 Msa0463950:CDS 25.0%
!! TAGGAAATTGAGAATTTTGA+AGG - chr3_3:63507387-63507406 Msa0463950:intron 25.0%
!! AGGAAATTGAGAATTTTGAA+GGG - chr3_3:63507388-63507407 Msa0463950:intron 25.0%
AAGCAACAAGAACAATTAAG+AGG + chr3_3:63504205-63504224 None:intergenic 30.0%
GTTCACATCAATATAGTAGA+TGG - chr3_3:63504715-63504734 Msa0463950:CDS 30.0%
AATTTAAATGGTTACTGCAG+TGG + chr3_3:63505058-63505077 None:intergenic 30.0%
! TAAGGGCATAGTATCATATT+GGG + chr3_3:63505147-63505166 None:intergenic 30.0%
! TTAAGGGCATAGTATCATAT+TGG + chr3_3:63505148-63505167 None:intergenic 30.0%
ATAAAGGGTTAAATGGTTGT+TGG - chr3_3:63505189-63505208 Msa0463950:CDS 30.0%
TGTAGAGACTTTCTAAACAA+GGG + chr3_3:63505606-63505625 None:intergenic 30.0%
TTGTAGAGACTTTCTAAACA+AGG + chr3_3:63505607-63505626 None:intergenic 30.0%
TATAGGTTATCGAAATGAGT+CGG + chr3_3:63505687-63505706 None:intergenic 30.0%
TTCCAATATTGAACAACTCT+TGG + chr3_3:63505752-63505771 None:intergenic 30.0%
TGGAAGTTCTACTAATAATC+TGG - chr3_3:63505767-63505786 Msa0463950:CDS 30.0%
GTTCTACTAATAATCTGGTA+AGG - chr3_3:63505772-63505791 Msa0463950:CDS 30.0%
AGGCAAATAAATGCAAAACA+TGG - chr3_3:63506024-63506043 Msa0463950:CDS 30.0%
CAAGATATTCATTTATAGCG+AGG - chr3_3:63506047-63506066 Msa0463950:CDS 30.0%
ACTAACAGAGTTTACATTCA+GGG + chr3_3:63507184-63507203 None:intergenic 30.0%
TTGCAATTTATCTGCATTCA+GGG + chr3_3:63507000-63507019 None:intergenic 30.0%
TTTGCAATTTATCTGCATTC+AGG + chr3_3:63506999-63507018 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + chr3_3:63506971-63506990 None:intergenic 30.0%
TCCTCTAATAAAGTCACAAT+CGG + chr3_3:63506654-63506673 None:intergenic 30.0%
TGACTTTATTAGAGGAGATA+AGG - chr3_3:63506658-63506677 Msa0463950:intron 30.0%
TGAAGATTCAAAGCAACAAA+TGG - chr3_3:63506775-63506794 Msa0463950:intron 30.0%
GAAGATTCAAAGCAACAAAT+GGG - chr3_3:63506776-63506795 Msa0463950:intron 30.0%
AAGATTCAAAGCAACAAATG+GGG - chr3_3:63506777-63506796 Msa0463950:intron 30.0%
TTGCAATTACTCTTCATTCA+TGG + chr3_3:63506850-63506869 None:intergenic 30.0%
ACTAATGAAGTTTGCATTCA+GGG - chr3_3:63506939-63506958 Msa0463950:intron 30.0%
ACTAACAAAGTCTACATTCA+GGG - chr3_3:63506971-63506990 Msa0463950:intron 30.0%
TTTGCAATTTATCTGCATTC+AGG - chr3_3:63506999-63507018 Msa0463950:intron 30.0%
TTGCAATTTATCTGCATTCA+GGG - chr3_3:63507000-63507019 Msa0463950:intron 30.0%
ACTAACAGAGTTTACATTCA+GGG - chr3_3:63507184-63507203 Msa0463950:intron 30.0%
! CTTGAGACTTTTAGTATATG+GGG + chr3_3:63507286-63507305 None:intergenic 30.0%
! GCTTGAGACTTTTAGTATAT+GGG + chr3_3:63507287-63507306 None:intergenic 30.0%
! AGCTTGAGACTTTTAGTATA+TGG + chr3_3:63507288-63507307 None:intergenic 30.0%
AGATAGTGTAATTAATTGCC+AGG - chr3_3:63507331-63507350 Msa0463950:intron 30.0%
GATAGTGTAATTAATTGCCA+GGG - chr3_3:63507332-63507351 Msa0463950:intron 30.0%
! CCTAATTAGGTTGTAATCAA+GGG + chr3_3:63507371-63507390 None:intergenic 30.0%
! TCCTAATTAGGTTGTAATCA+AGG + chr3_3:63507372-63507391 None:intergenic 30.0%
TGTAAAAGTTTAACAAAGGG+TGG - chr3_3:63507459-63507478 Msa0463950:intron 30.0%
! GTGGTTAGTTAAAGACAATT+TGG - chr3_3:63507478-63507497 Msa0463950:intron 30.0%
! GGTTAGTTAAAGACAATTTG+GGG - chr3_3:63507480-63507499 Msa0463950:intron 30.0%
GTTAGTTAAAGACAATTTGG+GGG - chr3_3:63507481-63507500 Msa0463950:intron 30.0%
TTAGTTAAAGACAATTTGGG+GGG - chr3_3:63507482-63507501 Msa0463950:intron 30.0%
TCATTAGCCATTGAAATCAA+CGG - chr3_3:63507543-63507562 Msa0463950:intron 30.0%
!!! ATTTTGAGCGTAAAAGCATT+TGG + chr3_3:63507672-63507691 None:intergenic 30.0%
! AAAATCTAGGGTTAGTGTTA+TGG - chr3_3:63507687-63507706 Msa0463950:intron 30.0%
AGGATTAGACAATAAGGATA+AGG - chr3_3:63507732-63507751 Msa0463950:intron 30.0%
TATTATATGGAGGAGAAAGT+TGG + chr3_3:63507771-63507790 None:intergenic 30.0%
TATAGGAATTCTTAGTAGAG+TGG + chr3_3:63507917-63507936 None:intergenic 30.0%
ACTCTACTAAGAATTCCTAT+AGG - chr3_3:63507916-63507935 Msa0463950:intron 30.0%
! AATTAGGCTCTCTTTTGTAA+GGG + chr3_3:63508004-63508023 None:intergenic 30.0%
! TAATTAGGCTCTCTTTTGTA+AGG + chr3_3:63508005-63508024 None:intergenic 30.0%
TAGGAACATTGGAGTTAATT+AGG + chr3_3:63508020-63508039 None:intergenic 30.0%
TCATATTGTGATAGGAACAT+TGG + chr3_3:63508031-63508050 None:intergenic 30.0%
!! CTAATAGGTGTACTTTTTAG+CGG - chr3_3:63508105-63508124 Msa0463950:intron 30.0%
!!! AGCGACATTATTTTTTTGTC+GGG - chr3_3:63508257-63508276 Msa0463950:intron 30.0%
!!! TATGCCACAAGTCTTTTTTT+TGG - chr3_3:63508288-63508307 Msa0463950:intron 30.0%
ATCACCAAAAAAAAGACTTG+TGG + chr3_3:63508295-63508314 None:intergenic 30.0%
!!! TAGTAGCAGCATTTTTTTGT+CGG - chr3_3:63508410-63508429 Msa0463950:intron 30.0%
CATTTGATATAAGACTAGCA+TGG - chr3_3:63508489-63508508 Msa0463950:intron 30.0%
TGTTCTCTATATAGCTTACA+TGG - chr3_3:63508638-63508657 Msa0463950:intron 30.0%
TATGCGAGTTTCTTTCTTAA+TGG + chr3_3:63508805-63508824 None:intergenic 30.0%
ATTAAGAAAGAAACTCGCAT+AGG - chr3_3:63508804-63508823 Msa0463950:intron 30.0%
TTAACGCAATGATCATTAAG+GGG - chr3_3:63504473-63504492 Msa0463950:three_prime_UTR 30.0%
CTAACAATAATTCAGCTAGA+GGG - chr3_3:63509033-63509052 Msa0463950:intron 30.0%
AATAATCTAGATGGCTAACA+TGG + chr3_3:63509466-63509485 None:intergenic 30.0%
AAGTTCCACAATAATCTAGA+TGG + chr3_3:63509475-63509494 None:intergenic 30.0%
AATAAACCACTCTAATGAAG+AGG + chr3_3:63509579-63509598 None:intergenic 30.0%
ATAAAGGGTTATATGGTTGT+TGG - chr3_3:63509605-63509624 Msa0463950:CDS 30.0%
! AGAGTGCTTAGATTCATAAA+GGG + chr3_3:63509727-63509746 None:intergenic 30.0%
TGTAGAGACTTTCTATACAA+GGG + chr3_3:63510015-63510034 None:intergenic 30.0%
TTGTAGAGACTTTCTATACA+AGG + chr3_3:63510016-63510035 None:intergenic 30.0%
!!! ATTTTTTAAAGCCTTTGCCA+AGG - chr3_3:63510224-63510243 Msa0463950:CDS 30.0%
!!! TTTTTTAAAGCCTTTGCCAA+GGG - chr3_3:63510225-63510244 Msa0463950:CDS 30.0%
!! TCAGTTGATTTTTCTGCAAT+TGG + chr3_3:63510307-63510326 None:intergenic 30.0%
! CCTAATTAGGTTGTAATCAA+GGG + chr3_3:63507371-63507390 None:intergenic 30.0%
! TCCTAATTAGGTTGTAATCA+AGG + chr3_3:63507372-63507391 None:intergenic 30.0%
TTCACTATAGACAACAGTTC+CGG + chr3_3:63504293-63504312 None:intergenic 35.0%
ATCCTCTGCTTTACTTAAGT+TGG - chr3_3:63504444-63504463 Msa0463950:three_prime_UTR 35.0%
GATGATACAAGCAGTTTCAT+AGG - chr3_3:63504517-63504536 Msa0463950:exon 35.0%
TCCTCTAGCTGAATTATTGT+TGG + chr3_3:63504560-63504579 None:intergenic 35.0%
ATATCAGGTGCACATACAAT+TGG - chr3_3:63505525-63505544 Msa0463950:intron 35.0%
GTAGAGACTTTCTAAACAAG+GGG + chr3_3:63505605-63505624 None:intergenic 35.0%
! ACATTGTCATTTCCACTTCT+GGG + chr3_3:63505639-63505658 None:intergenic 35.0%
GACCAAGAGTTGTTCAATAT+TGG - chr3_3:63505747-63505766 Msa0463950:CDS 35.0%
!!! ATTTTTTAAAGCCTTTGCCG+AGG - chr3_3:63505818-63505837 Msa0463950:CDS 35.0%
!!! TTTTTTAAAGCCTTTGCCGA+GGG - chr3_3:63505819-63505838 Msa0463950:CDS 35.0%
TTGAAGTTTCTCTGCATTCA+GGG + chr3_3:63507213-63507232 None:intergenic 35.0%
! TTTGAAGTTTCTCTGCATTC+AGG + chr3_3:63507212-63507231 None:intergenic 35.0%
GACTAACAGAGTTTACATTC+AGG + chr3_3:63507183-63507202 None:intergenic 35.0%
AACAGACCTATTTAACGTCA+GGG + chr3_3:63507152-63507171 None:intergenic 35.0%
TAACAGACCTATTTAACGTC+AGG + chr3_3:63507151-63507170 None:intergenic 35.0%
GACTAACAAAGTCTACATTC+AGG + chr3_3:63506970-63506989 None:intergenic 35.0%
ACTAACGAAGTTTGCATTCA+GGG + chr3_3:63506400-63506419 None:intergenic 35.0%
ATTGTAAAACAGTCCCTACA+TGG + chr3_3:63506476-63506495 None:intergenic 35.0%
TGTATGCAACAATACTTGTG+AGG - chr3_3:63506593-63506612 Msa0463950:intron 35.0%
GTATGCAACAATACTTGTGA+GGG - chr3_3:63506594-63506613 Msa0463950:intron 35.0%
TATGCAACAATACTTGTGAG+GGG - chr3_3:63506595-63506614 Msa0463950:intron 35.0%
ACCGATTGTGACTTTATTAG+AGG - chr3_3:63506650-63506669 Msa0463950:intron 35.0%
TTATGTTGGCCAACTTCAAT+CGG + chr3_3:63506713-63506732 None:intergenic 35.0%
ACTAACAGAGTCTACATTCA+GGG - chr3_3:63506907-63506926 Msa0463950:intron 35.0%
GACTAATGAAGTTTGCATTC+AGG - chr3_3:63506938-63506957 Msa0463950:intron 35.0%
GACTAACAAAGTCTACATTC+AGG - chr3_3:63506970-63506989 Msa0463950:intron 35.0%
TAACAGACCTATTTAACGTC+AGG - chr3_3:63507151-63507170 Msa0463950:intron 35.0%
AACAGACCTATTTAACGTCA+GGG - chr3_3:63507152-63507171 Msa0463950:intron 35.0%
GACTAACAGAGTTTACATTC+AGG - chr3_3:63507183-63507202 Msa0463950:intron 35.0%
! TTTGAAGTTTCTCTGCATTC+AGG - chr3_3:63507212-63507231 Msa0463950:intron 35.0%
TTGAAGTTTCTCTGCATTCA+GGG - chr3_3:63507213-63507232 Msa0463950:intron 35.0%
CCCTTGATTACAACCTAATT+AGG - chr3_3:63507368-63507387 Msa0463950:intron 35.0%
! TTTGAAGAGTATGGAATGCA+TGG - chr3_3:63507402-63507421 Msa0463950:intron 35.0%
! TTGAAGAGTATGGAATGCAT+GGG - chr3_3:63507403-63507422 Msa0463950:intron 35.0%
!! ATCTCATCCGTTGATTTCAA+TGG + chr3_3:63507553-63507572 None:intergenic 35.0%
ACCCAAAGTAAGTAGGTTTA+GGG - chr3_3:63507581-63507600 Msa0463950:intron 35.0%
TCCCTAAACCTACTTACTTT+GGG + chr3_3:63507585-63507604 None:intergenic 35.0%
ATCCCTAAACCTACTTACTT+TGG + chr3_3:63507586-63507605 None:intergenic 35.0%
! TGCTTTTACGCTCAAAATCT+AGG - chr3_3:63507674-63507693 Msa0463950:intron 35.0%
! GCTTTTACGCTCAAAATCTA+GGG - chr3_3:63507675-63507694 Msa0463950:intron 35.0%
! AGGGTTAGTGTTATGGAATT+AGG - chr3_3:63507694-63507713 Msa0463950:intron 35.0%
! GGGTTAGTGTTATGGAATTA+GGG - chr3_3:63507695-63507714 Msa0463950:intron 35.0%
TTAGGGTAGCAATGTTAAGA+AGG - chr3_3:63507712-63507731 Msa0463950:intron 35.0%
AAGGATAAGGATGACAAACA+AGG - chr3_3:63507745-63507764 Msa0463950:intron 35.0%
GAGGATGAGTTTATACTTGA+AGG + chr3_3:63507834-63507853 None:intergenic 35.0%
TTTGAACAATCTAAGCGTAG+AGG + chr3_3:63507853-63507872 None:intergenic 35.0%
TGAACAATCTCTTAGTAGAG+TGG + chr3_3:63507884-63507903 None:intergenic 35.0%
AATTCTTAGTAGAGTGGTGA+AGG + chr3_3:63507911-63507930 None:intergenic 35.0%
ACCTATTAGTGCCTATCATT+GGG + chr3_3:63508094-63508113 None:intergenic 35.0%
!!! AGTAGCAGCATTTTTTTGTC+GGG - chr3_3:63508411-63508430 Msa0463950:intron 35.0%
GTATACATGAAGGATAGAGT+TGG + chr3_3:63508577-63508596 None:intergenic 35.0%
CAGCAACAAGAACAAATAAG+AGG + chr3_3:63508677-63508696 None:intergenic 35.0%
! GTCTGTAGGTAACTTCTTTT+TGG + chr3_3:63508724-63508743 None:intergenic 35.0%
TTCACTATAGACAACAGTTC+CGG + chr3_3:63504293-63504312 None:intergenic 35.0%
TAATGGCATTTATGACTCCT+TGG + chr3_3:63508788-63508807 None:intergenic 35.0%
AATGGGACCAAATTAAGTGA+AGG + chr3_3:63508930-63508949 None:intergenic 35.0%
! GTGTGATGCATCAATACTTT+TGG - chr3_3:63508971-63508990 Msa0463950:intron 35.0%
GATGATACAAGCAGTTTCAT+AGG - chr3_3:63504517-63504536 Msa0463950:exon 35.0%
GCTAACAATAATTCAGCTAG+AGG - chr3_3:63509032-63509051 Msa0463950:intron 35.0%
TCGTCGTTAATTGTGTTAAG+TGG - chr3_3:63509368-63509387 Msa0463950:intron 35.0%
CGTTAATTGTGTTAAGTGGA+TGG - chr3_3:63509372-63509391 Msa0463950:intron 35.0%
TAAGTGGATGGTTAATGAAC+TGG - chr3_3:63509384-63509403 Msa0463950:intron 35.0%
GGTTAATTGAGTTTAGTGGA+TGG + chr3_3:63509432-63509451 None:intergenic 35.0%
ACGTGGTTAATTGAGTTTAG+TGG + chr3_3:63509436-63509455 None:intergenic 35.0%
GTTAGCCATCTAGATTATTG+TGG - chr3_3:63509467-63509486 Msa0463950:intron 35.0%
CTCTAATGAAGAGGATAGTA+TGG + chr3_3:63509570-63509589 None:intergenic 35.0%
TACTATCCTCTTCATTAGAG+TGG - chr3_3:63509570-63509589 Msa0463950:CDS 35.0%
!! GAGAGTGCTTAGATTCATAA+AGG + chr3_3:63509728-63509747 None:intergenic 35.0%
ATAACAGGTGCACATACAAT+TGG - chr3_3:63509934-63509953 Msa0463950:intron 35.0%
GTAGAGACTTTCTATACAAG+GGG + chr3_3:63510014-63510033 None:intergenic 35.0%
CCCTTGATTACAACCTAATT+AGG - chr3_3:63507368-63507387 Msa0463950:intron 35.0%
! TCTGCAATATCTGAAGCAGA+TGG - chr3_3:63504227-63504246 Msa0463950:three_prime_UTR 40.0%
GCAGATGGCAAAAATGAGTT+AGG - chr3_3:63504242-63504261 Msa0463950:three_prime_UTR 40.0%
TCACTATAGACAACAGTTCC+GGG + chr3_3:63504292-63504311 None:intergenic 40.0%
CTGTTGTCTATAGTGAACCA+AGG - chr3_3:63504296-63504315 Msa0463950:three_prime_UTR 40.0%
!! TAAGAGCATTTACGACTCCT+TGG + chr3_3:63504316-63504335 None:intergenic 40.0%
TCACATTTACAAAGCAGTCG+TGG + chr3_3:63504382-63504401 None:intergenic 40.0%
AGCCAACTTAAGTAAAGCAG+AGG + chr3_3:63504449-63504468 None:intergenic 40.0%
GCCAACAATAATTCAGCTAG+AGG - chr3_3:63504556-63504575 Msa0463950:CDS 40.0%
TGATGATATCAAAGCCAGTG+TGG - chr3_3:63504591-63504610 Msa0463950:CDS 40.0%
ATTTGAACACTGGAAAGTCG+TGG + chr3_3:63504863-63504882 None:intergenic 40.0%
GGTTAATTGTGTTGAACGAG+AGG - chr3_3:63504976-63504995 Msa0463950:intron 40.0%
GGTTGTTGGAATTTACAGCT+AGG - chr3_3:63505203-63505222 Msa0463950:intron 40.0%
TGTTGGAATTTACAGCTAGG+AGG - chr3_3:63505206-63505225 Msa0463950:intron 40.0%
GGATTCAATCACAGCTAGTA+GGG - chr3_3:63505259-63505278 Msa0463950:intron 40.0%
! AGAGCACCTAGATTGAGAAA+GGG + chr3_3:63505311-63505330 None:intergenic 40.0%
! CATTGTCATTTCCACTTCTG+GGG + chr3_3:63505638-63505657 None:intergenic 40.0%
! CACATTGTCATTTCCACTTC+TGG + chr3_3:63505640-63505659 None:intergenic 40.0%
TGAACAACTCTTGGTCTGAA+TGG + chr3_3:63505743-63505762 None:intergenic 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr3_3:63506106-63506125 Msa0463950:CDS 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - chr3_3:63506107-63506126 Msa0463950:CDS 40.0%
TTTCGTCCCTGACGTTAAAT+AGG - chr3_3:63506205-63506224 Msa0463950:intron 40.0%
TGATAACTGCCACGTAAGAT+TGG - chr3_3:63506264-63506283 Msa0463950:intron 40.0%
GATAACTGCCACGTAAGATT+GGG - chr3_3:63506265-63506284 Msa0463950:intron 40.0%
ATAACTGCCACGTAAGATTG+GGG - chr3_3:63506266-63506285 Msa0463950:intron 40.0%
ACTAATTCCCCAATCTTACG+TGG + chr3_3:63506276-63506295 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG - chr3_3:63506107-63506126 Msa0463950:CDS 40.0%
GACTAACGAAGTTTGCATTC+AGG + chr3_3:63506401-63506420 None:intergenic 40.0%
ACTAACGGAGTCTACATTCA+GGG + chr3_3:63506432-63506451 None:intergenic 40.0%
TCAGGGACTAAAGTGACTAA+CGG + chr3_3:63506537-63506556 None:intergenic 40.0%
TCCCTGAAATTGACCATGTA+GGG - chr3_3:63506460-63506479 Msa0463950:intron 40.0%
TCCCTACATGGTCAATTTCA+GGG + chr3_3:63506464-63506483 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + chr3_3:63506107-63506126 None:intergenic 40.0%
GACATCAAACCGATTGAAGT+TGG - chr3_3:63506701-63506720 Msa0463950:intron 40.0%
TTGAAGTTGGCCAACATAAG+TGG - chr3_3:63506714-63506733 Msa0463950:intron 40.0%
TGAAGTTGGCCAACATAAGT+GGG - chr3_3:63506715-63506734 Msa0463950:intron 40.0%
GATTGTTGCATTGGACATAG+AGG + chr3_3:63506741-63506760 None:intergenic 40.0%
TCCAATGCAACAATCTAAGC+TGG - chr3_3:63506746-63506765 Msa0463950:intron 40.0%
TCCAGCTTAGATTGTTGCAT+TGG + chr3_3:63506750-63506769 None:intergenic 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr3_3:63506106-63506125 Msa0463950:CDS 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG - chr3_3:63506107-63506126 Msa0463950:CDS 40.0%
ATTGCAAAACAGTCACTGCA+TGG - chr3_3:63506863-63506882 Msa0463950:intron 40.0%
TCACTGCATGGTCAATTTCA+GGG - chr3_3:63506875-63506894 Msa0463950:intron 40.0%
GACTAACAGAGTCTACATTC+AGG - chr3_3:63506906-63506925 Msa0463950:intron 40.0%
TGACGAATATCTTCCGATTC+AGG - chr3_3:63507030-63507049 Msa0463950:intron 40.0%
GACGAATATCTTCCGATTCA+GGG - chr3_3:63507031-63507050 Msa0463950:intron 40.0%
! AGTCACTTTAGTCCCTGAAT+CGG + chr3_3:63506107-63506126 None:intergenic 40.0%
TTTCGTCCCTGACGTTAAAT+AGG + chr3_3:63506205-63506224 None:intergenic 40.0%
! AGTCACTTTAGTCCCTGAAT+GGG + chr3_3:63506107-63506126 None:intergenic 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG + chr3_3:63506106-63506125 None:intergenic 40.0%
AGGGAAAAGTTGTTTAACCC+TGG + chr3_3:63507352-63507371 None:intergenic 40.0%
AATCAACGGATGAGATGCAT+TGG - chr3_3:63507557-63507576 Msa0463950:intron 40.0%
CACCCAAAGTAAGTAGGTTT+AGG - chr3_3:63507580-63507599 Msa0463950:intron 40.0%
AGGTTTAGGGATTGCAATCA+AGG - chr3_3:63507594-63507613 Msa0463950:intron 40.0%
ATCTCTTAGTAGAGTGGTGA+AGG + chr3_3:63507878-63507897 None:intergenic 40.0%
! ATCATTGGGTTCCTTTTGCA+TGG + chr3_3:63508080-63508099 None:intergenic 40.0%
TGCAAAAGGAACCCAATGAT+AGG - chr3_3:63508080-63508099 Msa0463950:intron 40.0%
ACCCAATGATAGGCACTAAT+AGG - chr3_3:63508090-63508109 Msa0463950:intron 40.0%
CACCTATTAGTGCCTATCAT+TGG + chr3_3:63508095-63508114 None:intergenic 40.0%
CTGTTGTCTATAGTGAACCA+AGG - chr3_3:63504296-63504315 Msa0463950:three_prime_UTR 40.0%
TCACGTTTACAAAGCAGTCA+TGG + chr3_3:63508854-63508873 None:intergenic 40.0%
GGACCAAATTAAGTGAAGGA+GGG + chr3_3:63508926-63508945 None:intergenic 40.0%
TGATGACATCAAAGCCAATG+TGG - chr3_3:63509067-63509086 Msa0463950:intron 40.0%
GGTTGTTGGAATTTACAGCT+AGG - chr3_3:63505203-63505222 Msa0463950:intron 40.0%
TGTTGGAATTTACAGCTAGG+AGG - chr3_3:63505206-63505225 Msa0463950:intron 40.0%
GGATTCAATCACAGCTAGTA+GGG - chr3_3:63505259-63505278 Msa0463950:intron 40.0%
! CTTAGATTCATAAAGGGTGC+AGG + chr3_3:63509721-63509740 None:intergenic 40.0%
! ACATTGTCGTTTCCACTTCT+GGG + chr3_3:63510048-63510067 None:intergenic 40.0%
! AACATTGTCGTTTCCACTTC+TGG + chr3_3:63510049-63510068 None:intergenic 40.0%
! CAAAATGAGTCGGTGTTTGA+TGG + chr3_3:63510086-63510105 None:intergenic 40.0%
TGAATAGCTCCTGATCTGAA+TGG + chr3_3:63510152-63510171 None:intergenic 40.0%
TCAGATCAGGAGCTATTCAA+TGG - chr3_3:63510153-63510172 Msa0463950:intron 40.0%
TGGAAGCTCTACTGATAATC+TGG - chr3_3:63510173-63510192 Msa0463950:intron 40.0%
!! ACTCATTTTGACCATACCCT+TGG + chr3_3:63510244-63510263 None:intergenic 40.0%
! ATGCGCTGATATTCTTGCTC+TGG - chr3_3:63504639-63504658 Msa0463950:CDS 45.0%
GGGATTCAATCACAGCTAGT+AGG - chr3_3:63505258-63505277 Msa0463950:intron 45.0%
!! GGGTGCTGGAATTGAGTTAT+TGG + chr3_3:63505291-63505310 None:intergenic 45.0%
!! GAGAGCACCTAGATTGAGAA+AGG + chr3_3:63505312-63505331 None:intergenic 45.0%
TCTAAACAAGGGGTCAACGT+TGG + chr3_3:63505595-63505614 None:intergenic 45.0%
! AGTCGGTGTTTGATAGTCGA+GGG + chr3_3:63505670-63505689 None:intergenic 45.0%
!! ACTCATTTTGACCATGCCCT+CGG + chr3_3:63505838-63505857 None:intergenic 45.0%
AGTAGCATCAAACCCCTTAC+AGG - chr3_3:63505855-63505874 Msa0463950:CDS 45.0%
AAACCCCTTACAGGAAGCAA+TGG - chr3_3:63505864-63505883 Msa0463950:CDS 45.0%
TGTCCATTGCTTCCTGTAAG+GGG + chr3_3:63505870-63505889 None:intergenic 45.0%
CTGTCCATTGCTTCCTGTAA+GGG + chr3_3:63505871-63505890 None:intergenic 45.0%
TCTGTCCATTGCTTCCTGTA+AGG + chr3_3:63505872-63505891 None:intergenic 45.0%
TAGGTCTGTTAACGATGACG+TGG - chr3_3:63506224-63506243 Msa0463950:intron 45.0%
GACGAATCTCTTCCGATTCA+GGG + chr3_3:63506308-63506327 None:intergenic 45.0%
TGACGAATCTCTTCCGATTC+AGG + chr3_3:63506309-63506328 None:intergenic 45.0%
GACTAACGGAGTCTACATTC+AGG + chr3_3:63506433-63506452 None:intergenic 45.0%
GTCCCTGAAATTGACCATGT+AGG - chr3_3:63506459-63506478 Msa0463950:intron 45.0%
GTCCCTACATGGTCAATTTC+AGG + chr3_3:63506465-63506484 None:intergenic 45.0%
! AAGTCACAATCGGTTTCGCT+CGG + chr3_3:63506644-63506663 None:intergenic 45.0%
ACATAGAGGCCCACTTATGT+TGG + chr3_3:63506727-63506746 None:intergenic 45.0%
GATGATTCCTCTCCCATTCA+GGG + chr3_3:63506819-63506838 None:intergenic 45.0%
TGATGATTCCTCTCCCATTC+AGG + chr3_3:63506820-63506839 None:intergenic 45.0%
GTCACTGCATGGTCAATTTC+AGG - chr3_3:63506874-63506893 Msa0463950:intron 45.0%
CTTGGCAAAACGTAAACACG+TGG + chr3_3:63507077-63507096 None:intergenic 45.0%
TGCCAAGTCACAATCTTACG+TGG - chr3_3:63507090-63507109 Msa0463950:intron 45.0%
TGCCACGTAAGATTGTGACT+TGG + chr3_3:63507095-63507114 None:intergenic 45.0%
TAGGTCTGTTAACGATGACG+TGG + chr3_3:63506224-63506243 None:intergenic 45.0%
CATTGGCACCCAAAGTAAGT+AGG - chr3_3:63507574-63507593 Msa0463950:intron 45.0%
! TATTGATTGAGCCCTTGTCG+AGG - chr3_3:63508051-63508070 Msa0463950:intron 45.0%
TTGCATGGATTCCTCGACAA+GGG + chr3_3:63508065-63508084 None:intergenic 45.0%
TTTGCATGGATTCCTCGACA+AGG + chr3_3:63508066-63508085 None:intergenic 45.0%
TGTCGAGGAATCCATGCAAA+AGG - chr3_3:63508066-63508085 Msa0463950:intron 45.0%
GTGCCCTCCTTCACTTAATT+TGG - chr3_3:63508920-63508939 Msa0463950:intron 45.0%
GGGACCAAATTAAGTGAAGG+AGG + chr3_3:63508927-63508946 None:intergenic 45.0%
!!! TGGGCATGCTTTTTCCACAT+TGG + chr3_3:63509084-63509103 None:intergenic 45.0%
! AATGTGGAAAAAGCATGCCC+AGG - chr3_3:63509083-63509102 Msa0463950:CDS 45.0%
CAGGGTAAGAATATCAGCAC+AGG + chr3_3:63509117-63509136 None:intergenic 45.0%
! CTGTGCTGATATTCTTACCC+TGG - chr3_3:63509115-63509134 Msa0463950:CDS 45.0%
TCACATGAACAACAGAGTCC+CGG + chr3_3:63509145-63509164 None:intergenic 45.0%
GCTAACATGGTTCACATACG+TGG + chr3_3:63509453-63509472 None:intergenic 45.0%
CCAAGCCTACATTCCATGAA+GGG + chr3_3:63509648-63509667 None:intergenic 45.0%
CCTTCATGGAATGTAGGCTT+GGG - chr3_3:63509646-63509665 Msa0463950:intron 45.0%
GAATGTAGGCTTGGGAAGAA+GGG - chr3_3:63509654-63509673 Msa0463950:intron 45.0%
GGGATTCAATCACAGCTAGT+AGG - chr3_3:63505258-63505277 Msa0463950:intron 45.0%
GGGTGCAGGAATTGAGTTAT+TGG + chr3_3:63509707-63509726 None:intergenic 45.0%
TCTATACAAGGGGTCGACAT+TGG + chr3_3:63510004-63510023 None:intergenic 45.0%
! CATTGTCGTTTCCACTTCTG+GGG + chr3_3:63510047-63510066 None:intergenic 45.0%
GGTTCTTCTCCATTCAGATC+AGG - chr3_3:63510140-63510159 Msa0463950:intron 45.0%
TAAAGCCTTTGCCAAGGGTA+TGG - chr3_3:63510230-63510249 Msa0463950:CDS 45.0%
TTTGACCATACCCTTGGCAA+AGG + chr3_3:63510238-63510257 None:intergenic 45.0%
TTGTCCATTGCTTCCTGTGA+GGG + chr3_3:63510277-63510296 None:intergenic 45.0%
TTTGTCCATTGCTTCCTGTG+AGG + chr3_3:63510278-63510297 None:intergenic 45.0%
!! AAATTCAATAATAATTTAAA+TGG + chr3_3:63505070-63505089 None:intergenic 5.0%
!! TAAAAAAATCTATAATTATA+TGG - chr3_3:63507805-63507824 Msa0463950:intron 5.0%
!! AAAAAAATCTATAATTATAT+GGG - chr3_3:63507806-63507825 Msa0463950:intron 5.0%
!! CTGTGACGCATCGATTCTGT+TGG - chr3_3:63504495-63504514 Msa0463950:three_prime_UTR 50.0%
TGTGGAGAAATCATGCCCCA+AGG - chr3_3:63504609-63504628 Msa0463950:CDS 50.0%
TCAGCGCATGACACAACCTT+GGG + chr3_3:63504628-63504647 None:intergenic 50.0%
ATCAGCGCATGACACAACCT+TGG + chr3_3:63504629-63504648 None:intergenic 50.0%
CCAAGCCTACATCCCATGAA+GGG + chr3_3:63505232-63505251 None:intergenic 50.0%
CCTTCATGGGATGTAGGCTT+GGG - chr3_3:63505230-63505249 Msa0463950:intron 50.0%
GGATGTAGGCTTGGGAAGAA+GGG - chr3_3:63505238-63505257 Msa0463950:intron 50.0%
! CCTAGATTGAGAAAGGGTGC+TGG + chr3_3:63505305-63505324 None:intergenic 50.0%
CCAGCACCCTTTCTCAATCT+AGG - chr3_3:63505302-63505321 Msa0463950:intron 50.0%
TAACCAAGGGCTCTCAGTTG+AGG - chr3_3:63505346-63505365 Msa0463950:intron 50.0%
CAAAACAAGTGCCCCAGAAG+TGG - chr3_3:63505624-63505643 Msa0463950:intron 50.0%
! GTCGGTGTTTGATAGTCGAG+GGG + chr3_3:63505669-63505688 None:intergenic 50.0%
! GAGTCGGTGTTTGATAGTCG+AGG + chr3_3:63505671-63505690 None:intergenic 50.0%
GACGAATCGCTTCCCATTCA+GGG + chr3_3:63507244-63507263 None:intergenic 50.0%
TGACGAATCGCTTCCCATTC+AGG + chr3_3:63507243-63507262 None:intergenic 50.0%
GTCTGTTAACGATGACGTGG+CGG - chr3_3:63506227-63506246 Msa0463950:intron 50.0%
TGACGACTCTCTTCCGATTC+AGG - chr3_3:63506519-63506538 Msa0463950:intron 50.0%
GACGACTCTCTTCCGATTCA+GGG - chr3_3:63506520-63506539 Msa0463950:intron 50.0%
CTTTAGTCCCTGAATGGGAG+AGG - chr3_3:63506809-63506828 Msa0463950:intron 50.0%
GTCTGTTAACGATGACGTGG+CGG + chr3_3:63506227-63506246 None:intergenic 50.0%
TGACGAATCGCTTCCCATTC+AGG - chr3_3:63507243-63507262 Msa0463950:intron 50.0%
GACGAATCGCTTCCCATTCA+GGG - chr3_3:63507244-63507263 Msa0463950:intron 50.0%
CTGCTGCAGTAGAAGTCTGT+AGG + chr3_3:63504266-63504285 None:intergenic 50.0%
ATATTCTTACCCTGGCTGCC+CGG - chr3_3:63509123-63509142 Msa0463950:CDS 50.0%
CACATGAACAACAGAGTCCC+GGG + chr3_3:63509144-63509163 None:intergenic 50.0%
CCCTTCATGGAATGTAGGCT+TGG - chr3_3:63509645-63509664 Msa0463950:intron 50.0%
CCCAAGCCTACATTCCATGA+AGG + chr3_3:63509649-63509668 None:intergenic 50.0%
GGAATGTAGGCTTGGGAAGA+AGG - chr3_3:63509653-63509672 Msa0463950:intron 50.0%
TAACCAAGGCCTCTCAGCTA+AGG - chr3_3:63509762-63509781 Msa0463950:intron 50.0%
!! AAGGACTTGGTGGCTCTTTC+AGG - chr3_3:63509781-63509800 Msa0463950:intron 50.0%
CAAAACAAGTGCCCCAGAAG+TGG - chr3_3:63505624-63505643 Msa0463950:intron 50.0%
! AGTCGGTGTTTGATGGTCGA+GGG + chr3_3:63510079-63510098 None:intergenic 50.0%
AGTAGCATCAAACCCCTCAC+AGG - chr3_3:63510261-63510280 Msa0463950:CDS 50.0%
AAACCCCTCACAGGAAGCAA+TGG - chr3_3:63510270-63510289 Msa0463950:CDS 50.0%
TGTCCATTGCTTCCTGTGAG+GGG + chr3_3:63510276-63510295 None:intergenic 50.0%
GGGGCATGATTTCTCCACAC+TGG + chr3_3:63504608-63504627 None:intergenic 55.0%
CAGCGCATGACACAACCTTG+GGG + chr3_3:63504627-63504646 None:intergenic 55.0%
TACAGCTAGGAGGCCCTTCA+TGG - chr3_3:63505216-63505235 Msa0463950:intron 55.0%
ACAGCTAGGAGGCCCTTCAT+GGG - chr3_3:63505217-63505236 Msa0463950:intron 55.0%
CCCTTCATGGGATGTAGGCT+TGG - chr3_3:63505229-63505248 Msa0463950:intron 55.0%
CCCAAGCCTACATCCCATGA+AGG + chr3_3:63505233-63505252 None:intergenic 55.0%
GGGATGTAGGCTTGGGAAGA+AGG - chr3_3:63505237-63505256 Msa0463950:intron 55.0%
AGTCCTCAACTGAGAGCCCT+TGG + chr3_3:63505352-63505371 None:intergenic 55.0%
AGGGCTCTCAGTTGAGGACT+TGG - chr3_3:63505352-63505371 Msa0463950:intron 55.0%
GCTCTCAGTTGAGGACTTGG+TGG - chr3_3:63505355-63505374 Msa0463950:intron 55.0%
!! GAGGACTTGGTGGCTCTTTC+AGG - chr3_3:63505365-63505384 Msa0463950:intron 55.0%
TAAAGCCTTTGCCGAGGGCA+TGG - chr3_3:63505824-63505843 Msa0463950:CDS 55.0%
TTTGACCATGCCCTCGGCAA+AGG + chr3_3:63505832-63505851 None:intergenic 55.0%
CTTCTACTGCAGCAGCTGTC+CGG - chr3_3:63508743-63508762 Msa0463950:intron 55.0%
CAGCACAGGACACAACTCCT+GGG + chr3_3:63509103-63509122 None:intergenic 55.0%
TCAGCACAGGACACAACTCC+TGG + chr3_3:63509104-63509123 None:intergenic 55.0%
TATTCTTACCCTGGCTGCCC+GGG - chr3_3:63509124-63509143 Msa0463950:CDS 55.0%
TACAGCTAGGAGGCCCTTCA+TGG - chr3_3:63505216-63505235 Msa0463950:intron 55.0%
GGAGGCCCTTCATGGAATGT+AGG - chr3_3:63509640-63509659 Msa0463950:intron 55.0%
AGTCCTTAGCTGAGAGGCCT+TGG + chr3_3:63509768-63509787 None:intergenic 55.0%
AGGCCTCTCAGCTAAGGACT+TGG - chr3_3:63509768-63509787 Msa0463950:intron 55.0%
CCACCAAGTCCTTAGCTGAG+AGG + chr3_3:63509774-63509793 None:intergenic 55.0%
CCTCTCAGCTAAGGACTTGG+TGG - chr3_3:63509771-63509790 Msa0463950:intron 55.0%
! GTCGGTGTTTGATGGTCGAG+GGG + chr3_3:63510078-63510097 None:intergenic 55.0%
! GAGTCGGTGTTTGATGGTCG+AGG + chr3_3:63510080-63510099 None:intergenic 55.0%
CTTCTACTGCAGCAGCTGCC+CGG - chr3_3:63504271-63504290 Msa0463950:three_prime_UTR 60.0%
TGCTCTGGCTGCTCGAGACT+CGG - chr3_3:63504654-63504673 Msa0463950:CDS 60.0%
GGAGGCCCTTCATGGGATGT+AGG - chr3_3:63505224-63505243 Msa0463950:intron 60.0%
CGATGACGTGGCGGCTGATG+TGG - chr3_3:63506236-63506255 Msa0463950:intron 65.0%
CGATGACGTGGCGGCTGATG+TGG + chr3_3:63506236-63506255 None:intergenic 65.0%
AACAGAGTCCCGGGCAGCCA+GGG + chr3_3:63509135-63509154 None:intergenic 65.0%
CAACAGAGTCCCGGGCAGCC+AGG + chr3_3:63509136-63509155 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 63504177 63510677 63504177 ID=Msa0463950;Name=Msa0463950
chr3_3 mRNA 63504177 63510677 63504177 ID=Msa0463950-mRNA-1;Parent=Msa0463950;Name=Msa0463950-mRNA-1;_AED=0.16;_eAED=0.16;_QI=8|0.28|0.25|1|0.71|0.62|8|351|555
chr3_3 exon 63504177 63504913 63504177 ID=Msa0463950-mRNA-1:exon:13894;Parent=Msa0463950-mRNA-1
chr3_3 exon 63505052 63505217 63505052 ID=Msa0463950-mRNA-1:exon:13893;Parent=Msa0463950-mRNA-1
chr3_3 exon 63505745 63505885 63505745 ID=Msa0463950-mRNA-1:exon:13892;Parent=Msa0463950-mRNA-1
chr3_3 exon 63505985 63506202 63505985 ID=Msa0463950-mRNA-1:exon:13891;Parent=Msa0463950-mRNA-1
chr3_3 exon 63509083 63509322 63509083 ID=Msa0463950-mRNA-1:exon:13890;Parent=Msa0463950-mRNA-1
chr3_3 exon 63509468 63509633 63509468 ID=Msa0463950-mRNA-1:exon:13889;Parent=Msa0463950-mRNA-1
chr3_3 exon 63510224 63510361 63510224 ID=Msa0463950-mRNA-1:exon:13888;Parent=Msa0463950-mRNA-1
chr3_3 exon 63510457 63510677 63510457 ID=Msa0463950-mRNA-1:exon:13887;Parent=Msa0463950-mRNA-1
chr3_3 five_prime_UTR 63510670 63510677 63510670 ID=Msa0463950-mRNA-1:five_prime_utr;Parent=Msa0463950-mRNA-1
chr3_3 CDS 63510457 63510669 63510457 ID=Msa0463950-mRNA-1:cds;Parent=Msa0463950-mRNA-1
chr3_3 CDS 63510224 63510361 63510224 ID=Msa0463950-mRNA-1:cds;Parent=Msa0463950-mRNA-1
chr3_3 CDS 63509468 63509633 63509468 ID=Msa0463950-mRNA-1:cds;Parent=Msa0463950-mRNA-1
chr3_3 CDS 63509083 63509322 63509083 ID=Msa0463950-mRNA-1:cds;Parent=Msa0463950-mRNA-1
chr3_3 CDS 63505985 63506202 63505985 ID=Msa0463950-mRNA-1:cds;Parent=Msa0463950-mRNA-1
chr3_3 CDS 63505745 63505885 63505745 ID=Msa0463950-mRNA-1:cds;Parent=Msa0463950-mRNA-1
chr3_3 CDS 63505052 63505217 63505052 ID=Msa0463950-mRNA-1:cds;Parent=Msa0463950-mRNA-1
chr3_3 CDS 63504528 63504913 63504528 ID=Msa0463950-mRNA-1:cds;Parent=Msa0463950-mRNA-1
chr3_3 three_prime_UTR 63504177 63504527 63504177 ID=Msa0463950-mRNA-1:three_prime_utr;Parent=Msa0463950-mRNA-1
Gene Sequence

>Msa0463950

ATGGCAGCTTACTACTTCCTCTTAATTGTTCTTGTTGCTTCTTCTGCAATATCTGAAGCAGATGGCAAAAATGAGTTAGGTACAGACTTCTACTGCAGCAGCTGCCCGGAACTGTTGTCTATAGTGAACCAAGGAGTCGTAAATGCTCTTAAAAAAGAAACTCGAATAGGAGCTTCTTTACTTCGATTGCATTTCCACGACTGCTTTGTAAATGGCTGTGACGCATCGATTCTGTTGGATGATACAAGCAGTTTCATAGGAGAAAAAACAGCAGCAGCCAACAATAATTCAGCTAGAGGATTCAACGTGATTGATGATATCAAAGCCAGTGTGGAGAAATCATGCCCCAAGCTAGGAGGCCCTTCATGGGATGTAGGCTTGGGAAGAAGGGATTCAATCACAGCTAGTAGGGCTGATGCCAATAACTCAATTCCAGCACCCTTTCTCAATCTAGGTGCTCTCAAAACAAATTTTGCTAACCAAGGGCTCTCAGTTGAGGACTTGGTGGCTCTTTCAGGTGCACATACAATTGGTCTCGCTCGATGTGTACAATTTCGAGCACACATCTACAATGACTCCAACGTTGACCCCTTGTTTAGAAAGTCTCTACAAAACAAGTGCCCCAGAAGTGGAAATGACAATGTGCTCGAACCCCTCGACTATCAAACACCGACTCATTTCGATAACCTATACTTCAAGAATTTACTAGCTAAAAAGGCTCTTCTCCATTCAGACCAAGAGTTGTTCAATATTGGAACTTACATGGCTTCTTACTACTTCCTCTTATTTGTTCTTGTTGCTGCTTCTGCAATATCTGAAGCAGATGCCAAAAAGAAGTTACCTACAGACTTCTACTGCAGCAGCTGTCCGGAACTGTTGTCTATAGTGAACCAAGGAGTCATAAATGCCATTAAGAAAGAAACTCGCATAGGAGCTTCTTTACTTCGATTGCATTTCCATGACTGCTTTGTAAACGGGTGTGATGCATCAATACTTTTGGATGATACAAGCAGTTTCATAGGAGAAAAAACAGCAGCAGCTAACAATAATTCAGCTAGAGGGTTCAACGTGATTGATGACATCAAAGCCAATGTGGAAAAAGCATGCCCAGGAGTTCTAGGAGGCCCTTCATGGAATGTAGGCTTGGGAAGAAGGGATTCAATCACAGCTAGTAGGGCTGATGCCAATAACTCAATTCCTGCACCCTTTATGAATCTAAGCACTCTCAAAACAAATTTTGCTAACCAAGGCCTCTCAGCTAAGGACTTGGTGGCTCTTTCAGGTGCACATACAATTGGTCTAGCTAGATGTGTACAATTTCGAGCACATATCTACAATGACTCCAATGTCGACCCCTTGTATAGAAAGTCTCTACAAAACAAGTGCCCCAGAAGTGGAAACGACAATGTTCTCGAACCCCTCGACCATCAAACACCGACTCATTTTGATAACCTATACTTCAAGAATTTACTAGCTAAAAAGGTTCTTCTCCATTCAGATCAGGAGCTATTCAATGGAAGCTCTACTGATAATCTGGTAAAGAAATATGCTACTGATAATGCTAAATTTTTTAAAGCCTTTGCCAAGGGTATGGTCAAAATGAGTAGCATCAAACCCCTCACAGGAAGCAATGGACAAATCAGAACCAATTGCAGAAAAATCAACTGA
Protein sequence

>Msa0463950

MAAYYFLLIVLVASSAISEADGKNELGTDFYCSSCPELLSIVNQGVVNALKKETRIGASLLRLHFHDCFVNGCDASILLDDTSSFIGEKTAAANNNSARGFNVIDDIKASVEKSCPKLGGPSWDVGLGRRDSITASRADANNSIPAPFLNLGALKTNFANQGLSVEDLVALSGAHTIGLARCVQFRAHIYNDSNVDPLFRKSLQNKCPRSGNDNVLEPLDYQTPTHFDNLYFKNLLAKKALLHSDQELFNIGTYMASYYFLLFVLVAASAISEADAKKKLPTDFYCSSCPELLSIVNQGVINAIKKETRIGASLLRLHFHDCFVNGCDASILLDDTSSFIGEKTAAANNNSARGFNVIDDIKANVEKACPGVLGGPSWNVGLGRRDSITASRADANNSIPAPFMNLSTLKTNFANQGLSAKDLVALSGAHTIGLARCVQFRAHIYNDSNVDPLYRKSLQNKCPRSGNDNVLEPLDHQTPTHFDNLYFKNLLAKKVLLHSDQELFNGSSTDNLVKKYATDNAKFFKAFAKGMVKMSSIKPLTGSNGQIRTNCRKIN*