AlfalfaGEDB | Msa0465050

M. sativa cultivar zhongmu-4 / Msa0465050

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465050	XP_024634011.2	96.330	109	3	1	1	108	42	150	4.65e-68	211

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465050	A0A396IWG2	96.330	109	3	1	1	108	1	109	1.62e-67	207

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0193200	Msa0465050	0.804357	2.245540e-49	-8.615850e-47
Msa0417130	Msa0465050	0.812690	3.733453e-51	-8.615850e-47
Msa0419300	Msa0465050	0.803095	4.104725e-49	-8.615850e-47
Msa0465050	Msa1120370	0.801756	7.746993e-49	-8.615850e-47
Msa0465050	Msa1180200	0.810667	1.028410e-50	-8.615850e-47
Msa0465050	Msa1245720	0.809266	2.059923e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465050	MtrunA17_Chr3g0116971	96.330	109	3	1	1	108	1	109	3.12e-71	207
Msa0465050	MtrunA17_Chr3g0116951	68.908	119	23	6	1	108	6	121	6.17e-42	135

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 45 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATTACCCACGAAGGAAC+AGG	0.491085	3_3:-65303521	Msa0465050:CDS
AATCGTTGAGAGGGTTGAAG+TGG	0.698905	3_3:-65303625	Msa0465050:CDS
AATGTGGGTGTGGTAGTCAT+TGG	0.581040	3_3:+65303779	None:intergenic
ACAACCCTGAAATCGTTGAG+AGG	0.647655	3_3:-65303635	Msa0465050:CDS
ACAGGTCAAATGGTCACTCA+TGG	0.552434	3_3:-65303503	Msa0465050:CDS
AGTGATCTACGAAGAGGACG+TGG	0.585316	3_3:-65303559	Msa0465050:CDS
ATAGACAACCCTCTTGTTGA+AGG	0.438765	3_3:+65303701	None:intergenic
ATGAACGTGTACCTGAGGTT+AGG	0.543426	3_3:-65303596	Msa0465050:CDS
CAACAAGAGGGTTGTCTATG+AGG	0.468986	3_3:-65303697	Msa0465050:CDS
CAACCCTCTCAACGATTTCA+GGG	0.425008	3_3:+65303631	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CCACATTTCAGAAGTTCGAA+GGG	-	chr3_3:65303511-65303530	Msa0465050:CDS	40.0%
TGAAGGCCATTTCACCATTT+GGG	+	chr3_3:65303559-65303578	None:intergenic	40.0%
TTGAAGGCCATTTCACCATT+TGG	+	chr3_3:65303560-65303579	None:intergenic	40.0%
TGAAATGGCCTTCAACAAGA+GGG	-	chr3_3:65303565-65303584	Msa0465050:CDS	40.0%
ATAGACAACCCTCTTGTTGA+AGG	+	chr3_3:65303576-65303595	None:intergenic	40.0%
TAGATCACTTGACCACCATA+AGG	+	chr3_3:65303704-65303723	None:intergenic	40.0%
GTCACTCATGGAATACATTC+AGG	-	chr3_3:65303783-65303802	Msa0465050:CDS	40.0%
AATGTGGGTGTGGTAGTCAT+TGG	+	chr3_3:65303498-65303517	None:intergenic	45.0%
CCCACATTTCAGAAGTTCGA+AGG	-	chr3_3:65303510-65303529	Msa0465050:CDS	45.0%
GAATACTCTCGCTACCCAAA+TGG	-	chr3_3:65303542-65303561	Msa0465050:CDS	45.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	65303485	65303811	65303485	ID=Msa0465050;Name=Msa0465050
chr3_3	mRNA	65303485	65303811	65303485	ID=Msa0465050-mRNA-1;Parent=Msa0465050;Name=Msa0465050-mRNA-1;_AED=0.27;_eAED=0.27;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|108
chr3_3	exon	65303485	65303811	65303485	ID=Msa0465050-mRNA-1:exon:14543;Parent=Msa0465050-mRNA-1
chr3_3	CDS	65303485	65303811	65303485	ID=Msa0465050-mRNA-1:cds;Parent=Msa0465050-mRNA-1

Gene Sequence	>Msa0465050 ATGATGAGATCCAATGACTACCACACCCACATTTCAGAAGTTCGAAGGGAGCCTAGCGAATACTCTCGCTACCCAAATGGTGAAATGGCCTTCAACAAGAGGGTTGTCTATGAGGAGGATGCGATTGAAGGATCACGCCATGGCCGCCACCACCACAACCCTGAAATCGTTGAGAGGGTTGAAGTGGTGGAATATGAACGTGTACCTGAGGTTAGGCCTTATGGTGGTCAAGTGATCTACGAAGAGGACGTGGATGTTGAGACCAATCAACATTACCCACGAAGGAACAGGTCAAATGGTCACTCATGGAATACATTCAGGCCATAA
Protein sequence	>Msa0465050 MMRSNDYHTHISEVRREPSEYSRYPNGEMAFNKRVVYEEDAIEGSRHGRHHHNPEIVERVEVVEYERVPEVRPYGGQVIYEEDVDVETNQHYPRRNRSNGHSWNTFRP*