AlfalfaGEDB | Msa0465750

M. sativa cultivar zhongmu-4 / Msa0465750

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004321 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006082 GO:0008150 GO:0008152 GO:0009058 GO:0009694 GO:0009695 GO:0009987 GO:0010817 GO:0016053 GO:0016408 GO:0016740 GO:0016746 GO:0016747 GO:0019752 GO:0032787 GO:0042445 GO:0042446 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046394 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:1901576
PFAM: PF00501.31

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465750	XP_003602077.1	99.492	197	1	0	1	197	366	562	4.44e-139	410

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465750	sp\|Q84P23\|4CLL9_ARATH	74.490	196	50	0	2	197	367	562	5.09e-108	323

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465750	G7J515	99.492	197	1	0	1	197	366	562	2.12e-139	410

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0092750	Msa0465750	0.805303	1.424687e-49	-8.615850e-47
Msa0186750	Msa0465750	0.801096	1.057628e-48	-8.615850e-47
Msa0465750	Msa0510240	0.822983	1.768574e-53	-8.615850e-47
Msa0465750	Msa1086210	0.800807	1.211896e-48	-8.615850e-47
Msa0465750	Msa1354930	0.808313	3.293479e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465750	MtrunA17_Chr3g0116271	99.492	197	1	0	1	197	366	562	4.08e-143	410
Msa0465750	MtrunA17_Chr3g0116251	97.970	197	4	0	1	197	364	560	2.73e-140	402
Msa0465750	MtrunA17_Chr1g0186071	63.636	187	67	1	1	187	365	550	4.52e-88	269
Msa0465750	MtrunA17_Chr1g0157401	61.290	186	72	0	4	189	371	556	3.03e-84	259
Msa0465750	MtrunA17_Chr5g0409771	56.757	185	78	1	3	185	363	547	2.98e-71	225
Msa0465750	MtrunA17_Chr4g0039791	55.676	185	80	1	3	185	369	553	7.67e-70	222
Msa0465750	MtrunA17_Chr2g0327341	54.945	182	81	1	9	189	354	535	2.09e-69	220
Msa0465750	MtrunA17_Chr4g0028411	55.866	179	78	1	9	186	357	535	2.06e-68	218
Msa0465750	MtrunA17_Chr5g0409791	55.208	192	83	2	3	192	376	566	2.50e-68	218
Msa0465750	MtrunA17_Chr1g0197391	58.242	182	75	1	6	186	378	559	9.61e-68	216

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0465750	AT5G63380.1	74.490	196	50	0	2	197	367	562	5.18e-109	323
Msa0465750	AT1G20510.1	62.176	193	71	1	5	197	356	546	6.84e-90	273
Msa0465750	AT1G20500.1	62.162	185	70	0	5	189	362	546	6.38e-84	258
Msa0465750	AT1G20480.1	62.766	188	70	0	1	188	373	560	2.12e-83	257
Msa0465750	AT5G38120.1	59.893	187	72	1	5	191	365	548	2.69e-81	251
Msa0465750	AT4G05160.1	58.101	179	75	0	8	186	359	537	4.56e-73	230
Msa0465750	AT4G19010.1	54.315	197	88	1	3	197	370	566	4.39e-72	228
Msa0465750	AT5G38120.3	60.131	153	58	1	5	157	365	514	6.23e-64	206
Msa0465750	AT3G21240.1	54.237	177	81	0	9	185	370	546	4.22e-61	199
Msa0465750	AT1G65060.1	55.367	177	79	0	9	185	380	556	1.92e-59	195

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Find 62 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGGAGCTTTGGTTGCG+AGG	0.553296	3_3:+66202454	Msa0465750:CDS
AAGATAGTTGACCCTGTTAC+TGG	0.325199	3_3:+66202409	Msa0465750:CDS
AAGCAACATCACTGCAGCTC+AGG	0.475913	3_3:+66203387	Msa0465750:CDS
ACACGTCGTATCTTCTTGTA+CGG	0.603152	3_3:-66203758	None:intergenic
ACCTTTATCAGCTATTCTTT+TGG	0.288642	3_3:+66204031	Msa0465750:three_prime_UTR
ACTGCAGCATCAGCAATTTC+AGG	0.286327	3_3:-66203140	None:intergenic
ACTGGGGAGTCATTATCTCC+TGG	0.514409	3_3:+66202427	Msa0465750:CDS
AGACATTGGATTCAGAGGGA+TGG	0.601070	3_3:+66202903	Msa0465750:CDS
AGATAGTTGACCCTGTTACT+GGG	0.529008	3_3:+66202410	Msa0465750:CDS
AGATGCAGGGCAAATTCCAA+TGG	0.641785	3_3:+66203342	Msa0465750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTAACATTATGCAAATGCAA+TGG	-	chr3_3:66202527-66202546	None:intergenic	30.0%
CATTGCATTTGCATAATGTT+AGG	+	chr3_3:66202525-66202544	Msa0465750:intron	30.0%
TCATGAACATAGCAAATCTT+TGG	-	chr3_3:66202573-66202592	None:intergenic	30.0%
GTCAAAATAACAAAGATCAC+CGG	-	chr3_3:66202936-66202955	None:intergenic	30.0%
GATCAAATACAAAGCTTATC+AGG	+	chr3_3:66202997-66203016	Msa0465750:CDS	30.0%
TTAAAGCAGTAGATACATAC+GGG	-	chr3_3:66203169-66203188	None:intergenic	30.0%
TACATGACTGTCTAATAAGA+AGG	+	chr3_3:66203272-66203291	Msa0465750:intron	30.0%
CAAGAGTTAAGAAAATCCAA+CGG	-	chr3_3:66203476-66203495	None:intergenic	30.0%
ATCATGTTCATTATTGTTGC+AGG	+	chr3_3:66203730-66203749	Msa0465750:intron	30.0%
CTAACATTATGCAAATGCAA+TGG	-	chr3_3:66202527-66202546	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	66202302	66204126	66202302	ID=Msa0465750;Name=Msa0465750
chr3_3	mRNA	66202302	66204126	66202302	ID=Msa0465750-mRNA-1;Parent=Msa0465750;Name=Msa0465750-mRNA-1;_AED=0.03;_eAED=0.03;_QI=41\|1\|1\|1\|1\|1\|5\|249\|197
chr3_3	exon	66202302	66202493	66202302	ID=Msa0465750-mRNA-1:exon:14939;Parent=Msa0465750-mRNA-1
chr3_3	exon	66202873	66203018	66202873	ID=Msa0465750-mRNA-1:exon:14940;Parent=Msa0465750-mRNA-1
chr3_3	exon	66203101	66203168	66203101	ID=Msa0465750-mRNA-1:exon:14941;Parent=Msa0465750-mRNA-1
chr3_3	exon	66203330	66203432	66203330	ID=Msa0465750-mRNA-1:exon:14942;Parent=Msa0465750-mRNA-1
chr3_3	exon	66203752	66204126	66203752	ID=Msa0465750-mRNA-1:exon:14943;Parent=Msa0465750-mRNA-1
chr3_3	five_prime_UTR	66202302	66202342	66202302	ID=Msa0465750-mRNA-1:five_prime_utr;Parent=Msa0465750-mRNA-1
chr3_3	CDS	66202343	66202493	66202343	ID=Msa0465750-mRNA-1:cds;Parent=Msa0465750-mRNA-1
chr3_3	CDS	66202873	66203018	66202873	ID=Msa0465750-mRNA-1:cds;Parent=Msa0465750-mRNA-1
chr3_3	CDS	66203101	66203168	66203101	ID=Msa0465750-mRNA-1:cds;Parent=Msa0465750-mRNA-1
chr3_3	CDS	66203330	66203432	66203330	ID=Msa0465750-mRNA-1:cds;Parent=Msa0465750-mRNA-1
chr3_3	CDS	66203752	66203877	66203752	ID=Msa0465750-mRNA-1:cds;Parent=Msa0465750-mRNA-1
chr3_3	three_prime_UTR	66203878	66204126	66203878	ID=Msa0465750-mRNA-1:three_prime_utr;Parent=Msa0465750-mRNA-1

Gene Sequence

>Msa0465750

ATGATAGGTTTTGATGAAGCTAAGCGCCACGGTTCTGTGGGTCGACTAGCAGAAAATATGGAAGCTAAGATAGTTGACCCTGTTACTGGGGAGTCATTATCTCCTGGCCAGAAAGGGGAGCTTTGGTTGCGAGGACCAACAATCATGAAAGGTTATGTAGGAGATGACAAGGCGACTGTTGAGACATTGGATTCAGAGGGATGGCTGAAGACCGGTGATCTTTGTTATTTTGACTCAGATGGTTATCTGTTCATTGTAGATAGACTGAAGGAATTGATCAAATACAAAGCTTATCAGGTTCCCCCAGCTGAATTAGAGCACATACTTCATACCAATCCTGAAATTGCTGATGCTGCAGTAGTCCCGTATCCTGATGAAGATGCAGGGCAAATTCCAATGGCTTTTGTGGTAAGAAAGCCAGGAAGCAACATCACTGCAGCTCAGGTCATGGACTATGTTGCGAAGCAGGTGACACCGTACAAGAAGATACGACGTGTTTCTTTTATCAACTCTATTCCAAAATCTCCAGCTGGCAAAATTTTAAGAAGAGAATTAGTTGATATTGCTCTAACTAGTGGTTCATCTAAATTGTGA

Protein sequence

>Msa0465750

MIGFDEAKRHGSVGRLAENMEAKIVDPVTGESLSPGQKGELWLRGPTIMKGYVGDDKATVETLDSEGWLKTGDLCYFDSDGYLFIVDRLKELIKYKAYQVPPAELEHILHTNPEIADAAVVPYPDEDAGQIPMAFVVRKPGSNITAAQVMDYVAKQVTPYKKIRRVSFINSIPKSPAGKILRRELVDIALTSGSSKL*