AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0092750


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092750 MtrunA17_Chr1g0184951 97.306 297 8 0 1 297 1 297 0.0 605
Msa0092750 MtrunA17_Chr1g0188121 76.667 300 57 3 1 297 1 290 2.03e-159 447
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0092750 AT3G63410.1 76.846 298 57 4 1 297 1 287 9.27e-153 431

Find 77 sgRNAs with CRISPR-Local

Find 256 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGAACTCCACGATACCATTT+TGG 0.111746 1_2:+75506639 None:intergenic
AACCAAACCCATTTCCATTT+TGG 0.136694 1_2:+75507957 None:intergenic
TCGATATACTCTTCTTCTTT+AGG 0.193738 1_2:+75506711 None:intergenic
CAAGAATCAATGCTAAAATT+AGG 0.196925 1_2:-75507889 Msa0092750:CDS
TCGCCGTCATGGCTTGATTA+TGG 0.203458 1_2:-75506619 Msa0092750:CDS
GTTTACGAAGGCAGGGTTTA+AGG 0.206012 1_2:-75506685 Msa0092750:CDS
CGATATACTCTTCTTCTTTA+GGG 0.222755 1_2:+75506712 None:intergenic
TACAATGTTTCTCTTCAAAT+TGG 0.240007 1_2:+75507862 None:intergenic
GTCCTGTCTACCCGACATTT+TGG 0.244718 1_2:-75506770 Msa0092750:CDS
TTGAATTGCAAAACCCAAAA+TGG 0.251263 1_2:-75507971 Msa0092750:CDS
CGCCGTCATGGCTTGATTAT+GGG 0.259408 1_2:-75506618 Msa0092750:CDS
ATCTGGGGATTCTCCTTTGC+AGG 0.267355 1_2:-75506568 Msa0092750:CDS
CGCGTTTCTTCGCAGATGTT+TGG 0.268470 1_2:-75506743 Msa0092750:CDS
TTAAGGATGTCCAGCTAAAA+AGG 0.270534 1_2:-75506668 Msa0092750:CDS
AAGAATCAATGCTAAAATTA+GGG 0.329851 1_2:-75507888 Msa0092750:CDS
TGCAAAACCCAAAATGGAAA+TGG 0.342940 1_2:-75507965 Msa0092750:CDS
GTTGATGTTGGTGGTGGTAC+TGG 0.349346 1_2:-75507641 Msa0092750:CDS
ACTGGTGTTAAGCCTGCATC+TGG 0.356332 1_2:-75506585 Msa0092750:CDS
ACCCAAAATGGAAATGGGTT+TGG 0.363731 1_2:-75507959 Msa0092750:CDS
TGTTTCTCAGCGTTGAATAC+TGG 0.374370 1_2:-75506863 Msa0092750:intron
TTGATGCCACGCTGTGGATC+TGG 0.384823 1_2:+75506840 None:intergenic
GGTACTGGTTTCACTACATT+GGG 0.400200 1_2:-75507626 Msa0092750:CDS
ATAAACCTGGGTTGTGAACT+TGG 0.409316 1_2:+75507806 None:intergenic
AAGGATTGTAAAATTGTTGA+AGG 0.409383 1_2:-75507515 Msa0092750:CDS
AAAGCAAAAGGAACCACTTA+AGG 0.411490 1_2:-75507534 Msa0092750:CDS
ATGTTATAAACCCCGGTCAT+TGG 0.420569 1_2:-75507727 Msa0092750:CDS
AATATGCTTGTTGTTGATGT+TGG 0.423767 1_2:-75507653 Msa0092750:CDS
ATCGAGTGGTTTACGAAGGC+AGG 0.431658 1_2:-75506693 Msa0092750:CDS
ATTATGGGTTGTTCTGTGAC+TGG 0.435412 1_2:-75506603 Msa0092750:CDS
GCAAAACCCAAAATGGAAAT+GGG 0.445634 1_2:-75507964 Msa0092750:CDS
ATGCTTGTTGTTGATGTTGG+TGG 0.461058 1_2:-75507650 Msa0092750:CDS
GGAAATGGGTTTGGTTTCAC+AGG 0.462226 1_2:-75507950 Msa0092750:CDS
AACCAAAATGTCGGGTAGAC+AGG 0.473847 1_2:+75506768 None:intergenic
TTCCTATCAGTAAGTTCAGC+TGG 0.478104 1_2:+75507674 None:intergenic
TGGTACTGGTTTCACTACAT+TGG 0.488035 1_2:-75507627 Msa0092750:CDS
CATATCTTCAGTCCAATGAC+CGG 0.490893 1_2:+75507715 None:intergenic
AGGATTGTAAAATTGTTGAA+GGG 0.496213 1_2:-75507514 Msa0092750:CDS
GTGGCATCAAGGAAGCATAC+AGG 0.498940 1_2:-75506827 Msa0092750:CDS
TTCACAGGTTCAGATTTCAA+TGG 0.502460 1_2:-75507935 Msa0092750:CDS
CTTGTTGTTGATGTTGGTGG+TGG 0.511570 1_2:-75507647 Msa0092750:CDS
AACCAGCTGAACTTACTGAT+AGG 0.522090 1_2:-75507676 Msa0092750:CDS
CTGGTGTTAAGCCTGCATCT+GGG 0.528996 1_2:-75506584 Msa0092750:CDS
AACGCGACAACCAAAATGTC+GGG 0.531908 1_2:+75506760 None:intergenic
GCTTGCTAAAGCAAAGCAAA+AGG 0.534201 1_2:-75507546 Msa0092750:CDS
AAAGGAGAATCCCCAGATGC+AGG 0.539061 1_2:+75506573 None:intergenic
AGATCCACAGCGTGGCATCA+AGG 0.554562 1_2:-75506838 Msa0092750:CDS
TATCGTGGAGTTCGCCGTCA+TGG 0.558525 1_2:-75506630 Msa0092750:CDS
GGATTGTAAAATTGTTGAAG+GGG 0.558559 1_2:-75507513 Msa0092750:CDS
ATATCTTCAGTCCAATGACC+GGG 0.562624 1_2:+75507716 None:intergenic
TGGTGTTAAGCCTGCATCTG+GGG 0.564309 1_2:-75506583 Msa0092750:CDS
AAGATGACAAATACCTGCAA+AGG 0.577073 1_2:+75506555 None:intergenic
GCTGATAGATATGTGTCCGC+TGG 0.579059 1_2:-75507458 Msa0092750:CDS
TCAGCATAATCAGTTCGAAA+GGG 0.581535 1_2:+75507476 None:intergenic
ATCAGCATAATCAGTTCGAA+AGG 0.586784 1_2:+75507475 None:intergenic
TCGAGTGGTTTACGAAGGCA+GGG 0.588098 1_2:-75506692 Msa0092750:CDS
GAATTGAGGTTACCGAGTAG+TGG 0.589175 1_2:+75508157 None:intergenic
CAAGACCAAGTTCACAACCC+AGG 0.594018 1_2:-75507811 Msa0092750:CDS
TTTGCTTTAGCAAGCTGATG+AGG 0.594550 1_2:+75507554 None:intergenic
ATAGATATGTGTCCGCTGGA+AGG 0.594629 1_2:-75507454 Msa0092750:intron
TGGCATCAAGGAAGCATACA+GGG 0.598551 1_2:-75506826 Msa0092750:CDS
AACCCATAATCAAGCCATGA+CGG 0.615385 1_2:+75506616 None:intergenic
AAACGCGACAACCAAAATGT+CGG 0.616259 1_2:+75506759 None:intergenic
TTTAGAGGAGGTCCTTACGA+AGG 0.619192 1_2:+75508407 None:intergenic
AATGACCGGGGTTTATAACA+TGG 0.636109 1_2:+75507729 None:intergenic
GCAGAAGATTGAAACGAAGG+TGG 0.638476 1_2:+75508214 None:intergenic
GCTTCCTTGATGCCACGCTG+TGG 0.644008 1_2:+75506834 None:intergenic
ACTCTCTCTCTACCACTACT+CGG 0.650592 1_2:-75508169 Msa0092750:intron
GTAGTGGTAGAGAGAGAGTG+AGG 0.655128 1_2:+75508173 None:intergenic
TATGACCATGTTATAAACCC+CGG 0.661674 1_2:-75507734 Msa0092750:CDS
ATTGGCCCAAAATGGTATCG+TGG 0.672762 1_2:-75506645 Msa0092750:CDS
GTAGCAGAAGATTGAAACGA+AGG 0.677715 1_2:+75508211 None:intergenic
GTATATCGAGTGGTTTACGA+AGG 0.686187 1_2:-75506697 Msa0092750:CDS
ATGGCTTCACTAATGCTCAG+TGG 0.694171 1_2:-75508013 Msa0092750:CDS
TATCTTCAGTCCAATGACCG+GGG 0.696574 1_2:+75507717 None:intergenic
AAGAAGAAGAGTATATCGAG+TGG 0.708626 1_2:-75506707 Msa0092750:CDS
GACATCGATATACCTTCCAG+CGG 0.718494 1_2:+75507442 None:intergenic
TACTGGCCAGATCCACAGCG+TGG 0.734186 1_2:-75506846 Msa0092750:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAAAAACAATGT+CGG + chr1_2:75506614-75506633 None:intergenic 10.0%
!! AAAAAAAATAAAAACAATGT+CGG + chr1_2:75506614-75506633 None:intergenic 10.0%
!!! GCTTAGTTTTTTTTTTTTTT+TGG - chr1_2:75507920-75507939 Msa0092750:CDS 15.0%
!!! GCTTAGTTTTTTTTTTTTTT+TGG - chr1_2:75507920-75507939 Msa0092750:CDS 15.0%
!!! TGAATTTTTCACATTAGAAT+GGG + chr1_2:75506910-75506929 None:intergenic 20.0%
!!! GATTTTGTAGATTAATTCAA+TGG - chr1_2:75506953-75506972 Msa0092750:intron 20.0%
!! AAGAATCAATGCTAAAATTA+GGG - chr1_2:75507097-75507116 Msa0092750:intron 20.0%
!! AACCATGCATAATTATTTAA+AGG + chr1_2:75507600-75507619 None:intergenic 20.0%
!! CTATAACAAGAGAAAAATAA+AGG + chr1_2:75507821-75507840 None:intergenic 20.0%
!!! TGAATTTTTCACATTAGAAT+GGG + chr1_2:75506910-75506929 None:intergenic 20.0%
!!! GATTTTGTAGATTAATTCAA+TGG - chr1_2:75506953-75506972 Msa0092750:intron 20.0%
!! AAGAATCAATGCTAAAATTA+GGG - chr1_2:75507097-75507116 Msa0092750:intron 20.0%
!! AACCATGCATAATTATTTAA+AGG + chr1_2:75507600-75507619 None:intergenic 20.0%
!! CTATAACAAGAGAAAAATAA+AGG + chr1_2:75507821-75507840 None:intergenic 20.0%
!!! AAGGTTTTTTTTGTTGTTGA+AGG + chr1_2:75506562-75506581 None:intergenic 25.0%
!!! AAAATCAAGTTTTGAGTATG+TGG - chr1_2:75506679-75506698 Msa0092750:CDS 25.0%
!!! AAAAGTGAATTTGAGTTGAA+AGG + chr1_2:75506872-75506891 None:intergenic 25.0%
!! GTGAATTTTTCACATTAGAA+TGG + chr1_2:75506911-75506930 None:intergenic 25.0%
!!! TAGCATTGATTCTTGTTTTT+GGG + chr1_2:75507091-75507110 None:intergenic 25.0%
!!! TTAGCATTGATTCTTGTTTT+TGG + chr1_2:75507092-75507111 None:intergenic 25.0%
! CAAGAATCAATGCTAAAATT+AGG - chr1_2:75507096-75507115 Msa0092750:intron 25.0%
! TACAATGTTTCTCTTCAAAT+TGG + chr1_2:75507126-75507145 None:intergenic 25.0%
!! TTTTTGTGTTGTATAAACCT+GGG + chr1_2:75507194-75507213 None:intergenic 25.0%
!!! TTTTTTGTGTTGTATAAACC+TGG + chr1_2:75507195-75507214 None:intergenic 25.0%
!!! AACACAAAAAAGAAGCATTT+TGG - chr1_2:75507204-75507223 Msa0092750:intron 25.0%
!!! AAGAAGCATTTTGGTTTTAT+AGG - chr1_2:75507213-75507232 Msa0092750:intron 25.0%
!! ACAATTTTACAATCCTTAAG+TGG + chr1_2:75507467-75507486 None:intergenic 25.0%
! AAGGATTGTAAAATTGTTGA+AGG - chr1_2:75507470-75507489 Msa0092750:CDS 25.0%
! AGGATTGTAAAATTGTTGAA+GGG - chr1_2:75507471-75507490 Msa0092750:CDS 25.0%
! AAGTGTACATAGATATAAAG+TGG - chr1_2:75507984-75508003 Msa0092750:CDS 25.0%
!!! AAGGTTTTTTTTGTTGTTGA+AGG + chr1_2:75506562-75506581 None:intergenic 25.0%
!!! AAAATCAAGTTTTGAGTATG+TGG - chr1_2:75506679-75506698 Msa0092750:CDS 25.0%
!!! AAAAGTGAATTTGAGTTGAA+AGG + chr1_2:75506872-75506891 None:intergenic 25.0%
!! GTGAATTTTTCACATTAGAA+TGG + chr1_2:75506911-75506930 None:intergenic 25.0%
!!! TAGCATTGATTCTTGTTTTT+GGG + chr1_2:75507091-75507110 None:intergenic 25.0%
!!! TTAGCATTGATTCTTGTTTT+TGG + chr1_2:75507092-75507111 None:intergenic 25.0%
! CAAGAATCAATGCTAAAATT+AGG - chr1_2:75507096-75507115 Msa0092750:intron 25.0%
! TACAATGTTTCTCTTCAAAT+TGG + chr1_2:75507126-75507145 None:intergenic 25.0%
!! TTTTTGTGTTGTATAAACCT+GGG + chr1_2:75507194-75507213 None:intergenic 25.0%
!!! TTTTTTGTGTTGTATAAACC+TGG + chr1_2:75507195-75507214 None:intergenic 25.0%
!!! AACACAAAAAAGAAGCATTT+TGG - chr1_2:75507204-75507223 Msa0092750:intron 25.0%
!!! AAGAAGCATTTTGGTTTTAT+AGG - chr1_2:75507213-75507232 Msa0092750:intron 25.0%
!! ACAATTTTACAATCCTTAAG+TGG + chr1_2:75507467-75507486 None:intergenic 25.0%
! AAGGATTGTAAAATTGTTGA+AGG - chr1_2:75507470-75507489 Msa0092750:CDS 25.0%
! AGGATTGTAAAATTGTTGAA+GGG - chr1_2:75507471-75507490 Msa0092750:CDS 25.0%
! AAGTGTACATAGATATAAAG+TGG - chr1_2:75507984-75508003 Msa0092750:CDS 25.0%
CAACAAAAAAAACCTTCGTA+AGG - chr1_2:75506566-75506585 Msa0092750:CDS 30.0%
!! GAATTTGAGTTGAAAGGAAT+GGG + chr1_2:75506866-75506885 None:intergenic 30.0%
!! TGAATTTGAGTTGAAAGGAA+TGG + chr1_2:75506867-75506886 None:intergenic 30.0%
TTGAATTGCAAAACCCAAAA+TGG - chr1_2:75507014-75507033 Msa0092750:intron 30.0%
!!! AGCATTGATTCTTGTTTTTG+GGG + chr1_2:75507090-75507109 None:intergenic 30.0%
!! AATATGCTTGTTGTTGATGT+TGG - chr1_2:75507332-75507351 Msa0092750:intron 30.0%
GGATTGTAAAATTGTTGAAG+GGG - chr1_2:75507472-75507491 Msa0092750:CDS 30.0%
CGCCTTTAAATAATTATGCA+TGG - chr1_2:75507595-75507614 Msa0092750:CDS 30.0%
TCAAATAAGCCAATCCAAAT+AGG + chr1_2:75507680-75507699 None:intergenic 30.0%
! TGTTTTCGTATAAGCTATCT+TGG + chr1_2:75507793-75507812 None:intergenic 30.0%
!! AAAGTAGATTGCTTTGAAAG+AGG - chr1_2:75508080-75508099 Msa0092750:intron 30.0%
!!! CATACAGGGTTTTGAAATTT+GGG - chr1_2:75508173-75508192 Msa0092750:five_prime_UTR 30.0%
!!! ATACAGGGTTTTGAAATTTG+GGG - chr1_2:75508174-75508193 Msa0092750:five_prime_UTR 30.0%
CGATATACTCTTCTTCTTTA+GGG + chr1_2:75508276-75508295 None:intergenic 30.0%
TCGATATACTCTTCTTCTTT+AGG + chr1_2:75508277-75508296 None:intergenic 30.0%
CAACAAAAAAAACCTTCGTA+AGG - chr1_2:75506566-75506585 Msa0092750:CDS 30.0%
!! GAATTTGAGTTGAAAGGAAT+GGG + chr1_2:75506866-75506885 None:intergenic 30.0%
!! TGAATTTGAGTTGAAAGGAA+TGG + chr1_2:75506867-75506886 None:intergenic 30.0%
TTGAATTGCAAAACCCAAAA+TGG - chr1_2:75507014-75507033 Msa0092750:intron 30.0%
!!! AGCATTGATTCTTGTTTTTG+GGG + chr1_2:75507090-75507109 None:intergenic 30.0%
!! AATATGCTTGTTGTTGATGT+TGG - chr1_2:75507332-75507351 Msa0092750:intron 30.0%
GGATTGTAAAATTGTTGAAG+GGG - chr1_2:75507472-75507491 Msa0092750:CDS 30.0%
CGCCTTTAAATAATTATGCA+TGG - chr1_2:75507595-75507614 Msa0092750:CDS 30.0%
TCAAATAAGCCAATCCAAAT+AGG + chr1_2:75507680-75507699 None:intergenic 30.0%
! TGTTTTCGTATAAGCTATCT+TGG + chr1_2:75507793-75507812 None:intergenic 30.0%
!! AAAGTAGATTGCTTTGAAAG+AGG - chr1_2:75508080-75508099 Msa0092750:intron 30.0%
!!! CATACAGGGTTTTGAAATTT+GGG - chr1_2:75508173-75508192 Msa0092750:five_prime_UTR 30.0%
!!! ATACAGGGTTTTGAAATTTG+GGG - chr1_2:75508174-75508193 Msa0092750:five_prime_UTR 30.0%
CGATATACTCTTCTTCTTTA+GGG + chr1_2:75508276-75508295 None:intergenic 30.0%
TCGATATACTCTTCTTCTTT+AGG + chr1_2:75508277-75508296 None:intergenic 30.0%
! GGACCTCCTCTAAAAAAAAT+TGG - chr1_2:75506587-75506606 Msa0092750:CDS 35.0%
!!! GGTCCAATTTTTTTTAGAGG+AGG + chr1_2:75506593-75506612 None:intergenic 35.0%
!!! GTCGGTCCAATTTTTTTTAG+AGG + chr1_2:75506596-75506615 None:intergenic 35.0%
GGAAATTTAGCAGAGAATTG+AGG + chr1_2:75506845-75506864 None:intergenic 35.0%
TGCAAAACCCAAAATGGAAA+TGG - chr1_2:75507020-75507039 Msa0092750:intron 35.0%
GCAAAACCCAAAATGGAAAT+GGG - chr1_2:75507021-75507040 Msa0092750:intron 35.0%
! ACCAAACCCATTTCCATTTT+GGG + chr1_2:75507030-75507049 None:intergenic 35.0%
! AACCAAACCCATTTCCATTT+TGG + chr1_2:75507031-75507050 None:intergenic 35.0%
TTCACAGGTTCAGATTTCAA+TGG - chr1_2:75507050-75507069 Msa0092750:intron 35.0%
TATGACCATGTTATAAACCC+CGG - chr1_2:75507251-75507270 Msa0092750:intron 35.0%
AAAGCAAAAGGAACCACTTA+AGG - chr1_2:75507451-75507470 Msa0092750:intron 35.0%
TCAGCATAATCAGTTCGAAA+GGG + chr1_2:75507512-75507531 None:intergenic 35.0%
ATCAGCATAATCAGTTCGAA+AGG + chr1_2:75507513-75507532 None:intergenic 35.0%
! TGTTCTTCTTGATGACTGTT+AGG - chr1_2:75507653-75507672 Msa0092750:CDS 35.0%
! GTTCTTCTTGATGACTGTTA+GGG - chr1_2:75507654-75507673 Msa0092750:CDS 35.0%
GCTTATTTGAGCTCATTTAC+TGG - chr1_2:75507690-75507709 Msa0092750:CDS 35.0%
AAAAAAACTAAGCCACTGCT+TGG + chr1_2:75507913-75507932 None:intergenic 35.0%
TGCAAATACACCTCTTTCAA+AGG + chr1_2:75508013-75508032 None:intergenic 35.0%
!!! GCATACAGGGTTTTGAAATT+TGG - chr1_2:75508172-75508191 Msa0092750:five_prime_UTR 35.0%
!!! TACAGGGTTTTGAAATTTGG+GGG - chr1_2:75508175-75508194 Msa0092750:five_prime_UTR 35.0%
! AAGAAGAAGAGTATATCGAG+TGG - chr1_2:75508278-75508297 Msa0092750:five_prime_UTR 35.0%
TTAAGGATGTCCAGCTAAAA+AGG - chr1_2:75508317-75508336 Msa0092750:five_prime_UTR 35.0%
!! TAAAAAGGATTGGCCCAAAA+TGG - chr1_2:75508332-75508351 Msa0092750:five_prime_UTR 35.0%
AAGATGACAAATACCTGCAA+AGG + chr1_2:75508433-75508452 None:intergenic 35.0%
! GGACCTCCTCTAAAAAAAAT+TGG - chr1_2:75506587-75506606 Msa0092750:CDS 35.0%
!!! GGTCCAATTTTTTTTAGAGG+AGG + chr1_2:75506593-75506612 None:intergenic 35.0%
!!! GTCGGTCCAATTTTTTTTAG+AGG + chr1_2:75506596-75506615 None:intergenic 35.0%
GGAAATTTAGCAGAGAATTG+AGG + chr1_2:75506845-75506864 None:intergenic 35.0%
TGCAAAACCCAAAATGGAAA+TGG - chr1_2:75507020-75507039 Msa0092750:intron 35.0%
GCAAAACCCAAAATGGAAAT+GGG - chr1_2:75507021-75507040 Msa0092750:intron 35.0%
! ACCAAACCCATTTCCATTTT+GGG + chr1_2:75507030-75507049 None:intergenic 35.0%
! AACCAAACCCATTTCCATTT+TGG + chr1_2:75507031-75507050 None:intergenic 35.0%
TTCACAGGTTCAGATTTCAA+TGG - chr1_2:75507050-75507069 Msa0092750:intron 35.0%
TATGACCATGTTATAAACCC+CGG - chr1_2:75507251-75507270 Msa0092750:intron 35.0%
AAAGCAAAAGGAACCACTTA+AGG - chr1_2:75507451-75507470 Msa0092750:intron 35.0%
TCAGCATAATCAGTTCGAAA+GGG + chr1_2:75507512-75507531 None:intergenic 35.0%
ATCAGCATAATCAGTTCGAA+AGG + chr1_2:75507513-75507532 None:intergenic 35.0%
! TGTTCTTCTTGATGACTGTT+AGG - chr1_2:75507653-75507672 Msa0092750:CDS 35.0%
! GTTCTTCTTGATGACTGTTA+GGG - chr1_2:75507654-75507673 Msa0092750:CDS 35.0%
GCTTATTTGAGCTCATTTAC+TGG - chr1_2:75507690-75507709 Msa0092750:CDS 35.0%
AAAAAAACTAAGCCACTGCT+TGG + chr1_2:75507913-75507932 None:intergenic 35.0%
TGCAAATACACCTCTTTCAA+AGG + chr1_2:75508013-75508032 None:intergenic 35.0%
!!! GCATACAGGGTTTTGAAATT+TGG - chr1_2:75508172-75508191 Msa0092750:five_prime_UTR 35.0%
!!! TACAGGGTTTTGAAATTTGG+GGG - chr1_2:75508175-75508194 Msa0092750:five_prime_UTR 35.0%
! AAGAAGAAGAGTATATCGAG+TGG - chr1_2:75508278-75508297 Msa0092750:five_prime_UTR 35.0%
TTAAGGATGTCCAGCTAAAA+AGG - chr1_2:75508317-75508336 Msa0092750:five_prime_UTR 35.0%
!! TAAAAAGGATTGGCCCAAAA+TGG - chr1_2:75508332-75508351 Msa0092750:five_prime_UTR 35.0%
AAGATGACAAATACCTGCAA+AGG + chr1_2:75508433-75508452 None:intergenic 35.0%
GTAGCAGAAGATTGAAACGA+AGG + chr1_2:75506777-75506796 None:intergenic 40.0%
! ACCCAAAATGGAAATGGGTT+TGG - chr1_2:75507026-75507045 Msa0092750:intron 40.0%
ATAAACCTGGGTTGTGAACT+TGG + chr1_2:75507182-75507201 None:intergenic 40.0%
AATGACCGGGGTTTATAACA+TGG + chr1_2:75507259-75507278 None:intergenic 40.0%
ATGTTATAAACCCCGGTCAT+TGG - chr1_2:75507258-75507277 Msa0092750:intron 40.0%
ATATCTTCAGTCCAATGACC+GGG + chr1_2:75507272-75507291 None:intergenic 40.0%
CATATCTTCAGTCCAATGAC+CGG + chr1_2:75507273-75507292 None:intergenic 40.0%
AACCAGCTGAACTTACTGAT+AGG - chr1_2:75507309-75507328 Msa0092750:intron 40.0%
TTCCTATCAGTAAGTTCAGC+TGG + chr1_2:75507314-75507333 None:intergenic 40.0%
!! ATGCTTGTTGTTGATGTTGG+TGG - chr1_2:75507335-75507354 Msa0092750:intron 40.0%
!! TGGTACTGGTTTCACTACAT+TGG - chr1_2:75507358-75507377 Msa0092750:intron 40.0%
!! GGTACTGGTTTCACTACATT+GGG - chr1_2:75507359-75507378 Msa0092750:intron 40.0%
TTTGCTTTAGCAAGCTGATG+AGG + chr1_2:75507434-75507453 None:intergenic 40.0%
! GCTTGCTAAAGCAAAGCAAA+AGG - chr1_2:75507439-75507458 Msa0092750:intron 40.0%
! TAAAGGCGTATGAAACAGCA+TGG + chr1_2:75507583-75507602 None:intergenic 40.0%
CAGCTACAAGATTGCAACAA+AGG + chr1_2:75507955-75507974 None:intergenic 40.0%
! AAAGTGGCTTCCTTTGAAAG+AGG - chr1_2:75508000-75508019 Msa0092750:CDS 40.0%
! TGTTTCTCAGCGTTGAATAC+TGG - chr1_2:75508122-75508141 Msa0092750:intron 40.0%
AAACGCGACAACCAAAATGT+CGG + chr1_2:75508229-75508248 None:intergenic 40.0%
GTATATCGAGTGGTTTACGA+AGG - chr1_2:75508288-75508307 Msa0092750:five_prime_UTR 40.0%
GATGTCCAGCTAAAAAGGAT+TGG - chr1_2:75508322-75508341 Msa0092750:five_prime_UTR 40.0%
! GAACTCCACGATACCATTTT+GGG + chr1_2:75508348-75508367 None:intergenic 40.0%
AACCCATAATCAAGCCATGA+CGG + chr1_2:75508372-75508391 None:intergenic 40.0%
! ATTATGGGTTGTTCTGTGAC+TGG - chr1_2:75508382-75508401 Msa0092750:five_prime_UTR 40.0%
GTAGCAGAAGATTGAAACGA+AGG + chr1_2:75506777-75506796 None:intergenic 40.0%
! ACCCAAAATGGAAATGGGTT+TGG - chr1_2:75507026-75507045 Msa0092750:intron 40.0%
ATAAACCTGGGTTGTGAACT+TGG + chr1_2:75507182-75507201 None:intergenic 40.0%
AATGACCGGGGTTTATAACA+TGG + chr1_2:75507259-75507278 None:intergenic 40.0%
ATGTTATAAACCCCGGTCAT+TGG - chr1_2:75507258-75507277 Msa0092750:intron 40.0%
ATATCTTCAGTCCAATGACC+GGG + chr1_2:75507272-75507291 None:intergenic 40.0%
CATATCTTCAGTCCAATGAC+CGG + chr1_2:75507273-75507292 None:intergenic 40.0%
AACCAGCTGAACTTACTGAT+AGG - chr1_2:75507309-75507328 Msa0092750:intron 40.0%
TTCCTATCAGTAAGTTCAGC+TGG + chr1_2:75507314-75507333 None:intergenic 40.0%
!! ATGCTTGTTGTTGATGTTGG+TGG - chr1_2:75507335-75507354 Msa0092750:intron 40.0%
!! TGGTACTGGTTTCACTACAT+TGG - chr1_2:75507358-75507377 Msa0092750:intron 40.0%
!! GGTACTGGTTTCACTACATT+GGG - chr1_2:75507359-75507378 Msa0092750:intron 40.0%
TTTGCTTTAGCAAGCTGATG+AGG + chr1_2:75507434-75507453 None:intergenic 40.0%
! GCTTGCTAAAGCAAAGCAAA+AGG - chr1_2:75507439-75507458 Msa0092750:intron 40.0%
! TAAAGGCGTATGAAACAGCA+TGG + chr1_2:75507583-75507602 None:intergenic 40.0%
CAGCTACAAGATTGCAACAA+AGG + chr1_2:75507955-75507974 None:intergenic 40.0%
! AAAGTGGCTTCCTTTGAAAG+AGG - chr1_2:75508000-75508019 Msa0092750:CDS 40.0%
! TGTTTCTCAGCGTTGAATAC+TGG - chr1_2:75508122-75508141 Msa0092750:intron 40.0%
AAACGCGACAACCAAAATGT+CGG + chr1_2:75508229-75508248 None:intergenic 40.0%
GTATATCGAGTGGTTTACGA+AGG - chr1_2:75508288-75508307 Msa0092750:five_prime_UTR 40.0%
GATGTCCAGCTAAAAAGGAT+TGG - chr1_2:75508322-75508341 Msa0092750:five_prime_UTR 40.0%
! GAACTCCACGATACCATTTT+GGG + chr1_2:75508348-75508367 None:intergenic 40.0%
AACCCATAATCAAGCCATGA+CGG + chr1_2:75508372-75508391 None:intergenic 40.0%
! ATTATGGGTTGTTCTGTGAC+TGG - chr1_2:75508382-75508401 Msa0092750:five_prime_UTR 40.0%
TTTAGAGGAGGTCCTTACGA+AGG + chr1_2:75506581-75506600 None:intergenic 45.0%
GCAGAAGATTGAAACGAAGG+TGG + chr1_2:75506774-75506793 None:intergenic 45.0%
ACTCTCTCTCTACCACTACT+CGG - chr1_2:75506816-75506835 Msa0092750:CDS 45.0%
GAATTGAGGTTACCGAGTAG+TGG + chr1_2:75506831-75506850 None:intergenic 45.0%
ATGGCTTCACTAATGCTCAG+TGG - chr1_2:75506972-75506991 Msa0092750:intron 45.0%
! GGAAATGGGTTTGGTTTCAC+AGG - chr1_2:75507035-75507054 Msa0092750:intron 45.0%
TATCTTCAGTCCAATGACCG+GGG + chr1_2:75507271-75507290 None:intergenic 45.0%
!! CTTGTTGTTGATGTTGGTGG+TGG - chr1_2:75507338-75507357 Msa0092750:intron 45.0%
ATAGATATGTGTCCGCTGGA+AGG - chr1_2:75507531-75507550 Msa0092750:CDS 45.0%
GACATCGATATACCTTCCAG+CGG + chr1_2:75507546-75507565 None:intergenic 45.0%
GATGACTGTTAGGGCCTATT+TGG - chr1_2:75507663-75507682 Msa0092750:CDS 45.0%
CTGTTAGGGCCTATTTGGAT+TGG - chr1_2:75507668-75507687 Msa0092750:CDS 45.0%
TAAGCTGTTTAGCCAAGCAG+TGG - chr1_2:75507898-75507917 Msa0092750:CDS 45.0%
! TGGCATCAAGGAAGCATACA+GGG - chr1_2:75508159-75508178 Msa0092750:intron 45.0%
GGGGGCAAAGCATGTTTAAT+TGG - chr1_2:75508193-75508212 Msa0092750:five_prime_UTR 45.0%
AACCAAAATGTCGGGTAGAC+AGG + chr1_2:75508220-75508239 None:intergenic 45.0%
AACGCGACAACCAAAATGTC+GGG + chr1_2:75508228-75508247 None:intergenic 45.0%
GTTTACGAAGGCAGGGTTTA+AGG - chr1_2:75508300-75508319 Msa0092750:five_prime_UTR 45.0%
!! TTGGGCCAATCCTTTTTAGC+TGG + chr1_2:75508330-75508349 None:intergenic 45.0%
ATTGGCCCAAAATGGTATCG+TGG - chr1_2:75508340-75508359 Msa0092750:five_prime_UTR 45.0%
! CGAACTCCACGATACCATTT+TGG + chr1_2:75508349-75508368 None:intergenic 45.0%
TTTAGAGGAGGTCCTTACGA+AGG + chr1_2:75506581-75506600 None:intergenic 45.0%
GCAGAAGATTGAAACGAAGG+TGG + chr1_2:75506774-75506793 None:intergenic 45.0%
ACTCTCTCTCTACCACTACT+CGG - chr1_2:75506816-75506835 Msa0092750:CDS 45.0%
GAATTGAGGTTACCGAGTAG+TGG + chr1_2:75506831-75506850 None:intergenic 45.0%
ATGGCTTCACTAATGCTCAG+TGG - chr1_2:75506972-75506991 Msa0092750:intron 45.0%
! GGAAATGGGTTTGGTTTCAC+AGG - chr1_2:75507035-75507054 Msa0092750:intron 45.0%
TATCTTCAGTCCAATGACCG+GGG + chr1_2:75507271-75507290 None:intergenic 45.0%
!! CTTGTTGTTGATGTTGGTGG+TGG - chr1_2:75507338-75507357 Msa0092750:intron 45.0%
ATAGATATGTGTCCGCTGGA+AGG - chr1_2:75507531-75507550 Msa0092750:CDS 45.0%
GACATCGATATACCTTCCAG+CGG + chr1_2:75507546-75507565 None:intergenic 45.0%
GATGACTGTTAGGGCCTATT+TGG - chr1_2:75507663-75507682 Msa0092750:CDS 45.0%
CTGTTAGGGCCTATTTGGAT+TGG - chr1_2:75507668-75507687 Msa0092750:CDS 45.0%
TAAGCTGTTTAGCCAAGCAG+TGG - chr1_2:75507898-75507917 Msa0092750:CDS 45.0%
! TGGCATCAAGGAAGCATACA+GGG - chr1_2:75508159-75508178 Msa0092750:intron 45.0%
GGGGGCAAAGCATGTTTAAT+TGG - chr1_2:75508193-75508212 Msa0092750:five_prime_UTR 45.0%
AACCAAAATGTCGGGTAGAC+AGG + chr1_2:75508220-75508239 None:intergenic 45.0%
AACGCGACAACCAAAATGTC+GGG + chr1_2:75508228-75508247 None:intergenic 45.0%
GTTTACGAAGGCAGGGTTTA+AGG - chr1_2:75508300-75508319 Msa0092750:five_prime_UTR 45.0%
!! TTGGGCCAATCCTTTTTAGC+TGG + chr1_2:75508330-75508349 None:intergenic 45.0%
ATTGGCCCAAAATGGTATCG+TGG - chr1_2:75508340-75508359 Msa0092750:five_prime_UTR 45.0%
! CGAACTCCACGATACCATTT+TGG + chr1_2:75508349-75508368 None:intergenic 45.0%
GTAGTGGTAGAGAGAGAGTG+AGG + chr1_2:75506815-75506834 None:intergenic 50.0%
CAAGACCAAGTTCACAACCC+AGG - chr1_2:75507174-75507193 Msa0092750:intron 50.0%
!! GTTGATGTTGGTGGTGGTAC+TGG - chr1_2:75507344-75507363 Msa0092750:intron 50.0%
GCTGATAGATATGTGTCCGC+TGG - chr1_2:75507527-75507546 Msa0092750:CDS 50.0%
! GTGGCATCAAGGAAGCATAC+AGG - chr1_2:75508158-75508177 Msa0092750:intron 50.0%
! GTCCTGTCTACCCGACATTT+TGG - chr1_2:75508215-75508234 Msa0092750:five_prime_UTR 50.0%
CGCGTTTCTTCGCAGATGTT+TGG - chr1_2:75508242-75508261 Msa0092750:five_prime_UTR 50.0%
ATCGAGTGGTTTACGAAGGC+AGG - chr1_2:75508292-75508311 Msa0092750:five_prime_UTR 50.0%
TCGAGTGGTTTACGAAGGCA+GGG - chr1_2:75508293-75508312 Msa0092750:five_prime_UTR 50.0%
TCGCCGTCATGGCTTGATTA+TGG - chr1_2:75508366-75508385 Msa0092750:five_prime_UTR 50.0%
CGCCGTCATGGCTTGATTAT+GGG - chr1_2:75508367-75508386 Msa0092750:five_prime_UTR 50.0%
! ACTGGTGTTAAGCCTGCATC+TGG - chr1_2:75508400-75508419 Msa0092750:five_prime_UTR 50.0%
! CTGGTGTTAAGCCTGCATCT+GGG - chr1_2:75508401-75508420 Msa0092750:five_prime_UTR 50.0%
! TGGTGTTAAGCCTGCATCTG+GGG - chr1_2:75508402-75508421 Msa0092750:five_prime_UTR 50.0%
AAAGGAGAATCCCCAGATGC+AGG + chr1_2:75508415-75508434 None:intergenic 50.0%
ATCTGGGGATTCTCCTTTGC+AGG - chr1_2:75508417-75508436 Msa0092750:five_prime_UTR 50.0%
GTAGTGGTAGAGAGAGAGTG+AGG + chr1_2:75506815-75506834 None:intergenic 50.0%
CAAGACCAAGTTCACAACCC+AGG - chr1_2:75507174-75507193 Msa0092750:intron 50.0%
!! GTTGATGTTGGTGGTGGTAC+TGG - chr1_2:75507344-75507363 Msa0092750:intron 50.0%
GCTGATAGATATGTGTCCGC+TGG - chr1_2:75507527-75507546 Msa0092750:CDS 50.0%
! GTGGCATCAAGGAAGCATAC+AGG - chr1_2:75508158-75508177 Msa0092750:intron 50.0%
! GTCCTGTCTACCCGACATTT+TGG - chr1_2:75508215-75508234 Msa0092750:five_prime_UTR 50.0%
CGCGTTTCTTCGCAGATGTT+TGG - chr1_2:75508242-75508261 Msa0092750:five_prime_UTR 50.0%
ATCGAGTGGTTTACGAAGGC+AGG - chr1_2:75508292-75508311 Msa0092750:five_prime_UTR 50.0%
TCGAGTGGTTTACGAAGGCA+GGG - chr1_2:75508293-75508312 Msa0092750:five_prime_UTR 50.0%
TCGCCGTCATGGCTTGATTA+TGG - chr1_2:75508366-75508385 Msa0092750:five_prime_UTR 50.0%
CGCCGTCATGGCTTGATTAT+GGG - chr1_2:75508367-75508386 Msa0092750:five_prime_UTR 50.0%
! ACTGGTGTTAAGCCTGCATC+TGG - chr1_2:75508400-75508419 Msa0092750:five_prime_UTR 50.0%
! CTGGTGTTAAGCCTGCATCT+GGG - chr1_2:75508401-75508420 Msa0092750:five_prime_UTR 50.0%
! TGGTGTTAAGCCTGCATCTG+GGG - chr1_2:75508402-75508421 Msa0092750:five_prime_UTR 50.0%
AAAGGAGAATCCCCAGATGC+AGG + chr1_2:75508415-75508434 None:intergenic 50.0%
ATCTGGGGATTCTCCTTTGC+AGG - chr1_2:75508417-75508436 Msa0092750:five_prime_UTR 50.0%
TTGATGCCACGCTGTGGATC+TGG + chr1_2:75508148-75508167 None:intergenic 55.0%
AGATCCACAGCGTGGCATCA+AGG - chr1_2:75508147-75508166 Msa0092750:intron 55.0%
TATCGTGGAGTTCGCCGTCA+TGG - chr1_2:75508355-75508374 Msa0092750:five_prime_UTR 55.0%
TTGATGCCACGCTGTGGATC+TGG + chr1_2:75508148-75508167 None:intergenic 55.0%
AGATCCACAGCGTGGCATCA+AGG - chr1_2:75508147-75508166 Msa0092750:intron 55.0%
TATCGTGGAGTTCGCCGTCA+TGG - chr1_2:75508355-75508374 Msa0092750:five_prime_UTR 55.0%
TACTGGCCAGATCCACAGCG+TGG - chr1_2:75508139-75508158 Msa0092750:intron 60.0%
GCTTCCTTGATGCCACGCTG+TGG + chr1_2:75508154-75508173 None:intergenic 60.0%
TACTGGCCAGATCCACAGCG+TGG - chr1_2:75508139-75508158 Msa0092750:intron 60.0%
GCTTCCTTGATGCCACGCTG+TGG + chr1_2:75508154-75508173 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 75506545 75508462 75506545 ID=Msa0092750;Name=Msa0092750
chr1_2 mRNA 75506545 75508462 75506545 ID=Msa0092750-mRNA-1;Parent=Msa0092750;Name=Msa0092750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=302|1|0.66|1|0.5|0.33|3|0|303
chr1_2 exon 75506545 75506875 75506545 ID=Msa0092750-mRNA-1:exon:26562;Parent=Msa0092750-mRNA-1
chr1_2 exon 75507455 75508044 75507455 ID=Msa0092750-mRNA-1:exon:26561;Parent=Msa0092750-mRNA-1
chr1_2 exon 75508170 75508462 75508170 ID=Msa0092750-mRNA-1:exon:26560;Parent=Msa0092750-mRNA-1
chr1_2 five_prime_UTR 75508170 75508462 75508170 ID=Msa0092750-mRNA-1:five_prime_utr;Parent=Msa0092750-mRNA-1
chr1_2 five_prime_UTR 75508036 75508044 75508036 ID=Msa0092750-mRNA-1:five_prime_utr;Parent=Msa0092750-mRNA-1
chr1_2 CDS 75507455 75508035 75507455 ID=Msa0092750-mRNA-1:cds;Parent=Msa0092750-mRNA-1
chr1_2 CDS 75506545 75506875 75506545 ID=Msa0092750-mRNA-1:cds;Parent=Msa0092750-mRNA-1
Gene Sequence

>Msa0092750

ATGGCTTCACTAATGCTCAGTGGAACTCAAAAGCTTACATTTTTGAATTGCAAAACCCAAAATGGAAATGGGTTTGGTTTCACAGGTTCAGATTTCAATGGTAAGAGCTTAATTTCCCCAAAAACAAGAATCAATGCTAAAATTAGGGTTTCCAATTTGAAGAGAAACATTGTAGTACGTTCTAGTTCTAGTGTATCATCTTCAAGACCAAGTTCACAACCCAGGTTTATACAACACAAAAAAGAAGCATTTTGGTTTTATAGGTTTCTTTCAATTGTGTATGACCATGTTATAAACCCCGGTCATTGGACTGAAGATATGAGAGATGAAGCTCTTGAACCAGCTGAACTTACTGATAGGAATATGCTTGTTGTTGATGTTGGTGGTGGTACTGGTTTCACTACATTGGGTATTGTTAAGCATGTCGATGCTAAGAATGTAACTATTCTTGATCAGTCACCTCATCAGCTTGCTAAAGCAAAGCAAAAGGAACCACTTAAGGATTGTAAAATTGTTGAAGGGGATGCTGAAGATTTACCCTTTCGAACTGATTATGCTGATAGATATGTGTCCGCTGGAAGCGTTGAATACTGGCCAGATCCACAGCGTGGCATCAAGGAAGCATACAGGGTTTTGAAATTTGGGGGCAAAGCATGTTTAATTGGTCCTGTCTACCCGACATTTTGGTTGTCGCGTTTCTTCGCAGATGTTTGGATGCTTTTCCCTAAAGAAGAAGAGTATATCGAGTGGTTTACGAAGGCAGGGTTTAAGGATGTCCAGCTAAAAAGGATTGGCCCAAAATGGTATCGTGGAGTTCGCCGTCATGGCTTGATTATGGGTTGTTCTGTGACTGGTGTTAAGCCTGCATCTGGGGATTCTCCTTTGCAGGTATTTGTCATCTTAGCTTCTTAA

Protein sequence

>Msa0092750

MASLMLSGTQKLTFLNCKTQNGNGFGFTGSDFNGKSLISPKTRINAKIRVSNLKRNIVVRSSSSVSSSRPSSQPRFIQHKKEAFWFYRFLSIVYDHVINPGHWTEDMRDEALEPAELTDRNMLVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKDCKIVEGDAEDLPFRTDYADRYVSAGSVEYWPDPQRGIKEAYRVLKFGGKACLIGPVYPTFWLSRFFADVWMLFPKEEEYIEWFTKAGFKDVQLKRIGPKWYRGVRRHGLIMGCSVTGVKPASGDSPLQVFVILAS*