Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466430 | XP_003601381.1 | 97.255 | 255 | 7 | 0 | 1 | 255 | 1 | 255 | 1.99e-180 | 505 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466430 | sp|P46667|ATHB5_ARATH | 53.571 | 168 | 65 | 4 | 1 | 155 | 1 | 168 | 3.20e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466430 | G7J6Q0 | 97.255 | 255 | 7 | 0 | 1 | 255 | 1 | 255 | 0.0 | 505 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0466430 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0466430 | Msa1145160 | 0.890022 | 1.433502e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466430 | MtrunA17_Chr3g0119291 | 97.255 | 255 | 7 | 0 | 1 | 255 | 1 | 255 | 0.0 | 505 |
| Msa0466430 | MtrunA17_Chr8g0381741 | 38.312 | 308 | 131 | 9 | 1 | 255 | 1 | 302 | 6.99e-55 | 179 |
| Msa0466430 | MtrunA17_Chr3g0123691 | 40.940 | 298 | 128 | 11 | 1 | 255 | 1 | 293 | 5.06e-46 | 155 |
| Msa0466430 | MtrunA17_Chr6g0453021 | 45.960 | 198 | 92 | 4 | 42 | 238 | 82 | 265 | 3.86e-40 | 139 |
| Msa0466430 | MtrunA17_Chr8g0362151 | 57.724 | 123 | 51 | 1 | 46 | 168 | 64 | 185 | 6.24e-38 | 134 |
| Msa0466430 | MtrunA17_Chr5g0416391 | 57.600 | 125 | 52 | 1 | 44 | 168 | 62 | 185 | 1.27e-37 | 133 |
| Msa0466430 | MtrunA17_Chr5g0415941 | 56.667 | 120 | 52 | 0 | 47 | 166 | 75 | 194 | 1.29e-37 | 134 |
| Msa0466430 | MtrunA17_Chr4g0060031 | 63.810 | 105 | 38 | 0 | 58 | 162 | 94 | 198 | 9.47e-36 | 130 |
| Msa0466430 | MtrunA17_Chr8g0362751 | 61.538 | 104 | 40 | 0 | 59 | 162 | 89 | 192 | 1.55e-35 | 128 |
| Msa0466430 | MtrunA17_Chr6g0450991 | 61.682 | 107 | 41 | 0 | 58 | 164 | 66 | 172 | 1.83e-34 | 125 |
| Msa0466430 | MtrunA17_Chr7g0217111 | 52.713 | 129 | 57 | 2 | 47 | 174 | 71 | 196 | 4.80e-33 | 121 |
| Msa0466430 | MtrunA17_Chr7g0265521 | 47.015 | 134 | 69 | 2 | 52 | 185 | 56 | 187 | 2.56e-29 | 110 |
| Msa0466430 | MtrunA17_Chr1g0179581 | 56.627 | 83 | 36 | 0 | 58 | 140 | 27 | 109 | 2.04e-25 | 96.7 |
| Msa0466430 | MtrunA17_Chr3g0127511 | 49.451 | 91 | 46 | 0 | 61 | 151 | 40 | 130 | 1.70e-23 | 95.5 |
| Msa0466430 | MtrunA17_Chr8g0346251 | 48.837 | 86 | 44 | 0 | 66 | 151 | 48 | 133 | 3.32e-23 | 94.7 |
| Msa0466430 | MtrunA17_Chr4g0055851 | 46.667 | 105 | 49 | 1 | 49 | 153 | 110 | 207 | 2.45e-20 | 87.8 |
| Msa0466430 | MtrunA17_Chr4g0054421 | 45.946 | 111 | 51 | 2 | 43 | 153 | 113 | 214 | 1.35e-19 | 85.5 |
| Msa0466430 | MtrunA17_Chr5g0403701 | 43.220 | 118 | 55 | 1 | 51 | 168 | 45 | 150 | 4.51e-19 | 82.8 |
| Msa0466430 | MtrunA17_Chr4g0071411 | 46.739 | 92 | 42 | 1 | 62 | 153 | 91 | 175 | 1.29e-18 | 81.6 |
| Msa0466430 | MtrunA17_Chr5g0403691 | 42.500 | 120 | 60 | 3 | 51 | 168 | 45 | 157 | 1.37e-17 | 79.0 |
| Msa0466430 | MtrunA17_Chr1g0175651 | 46.226 | 106 | 48 | 2 | 48 | 153 | 145 | 241 | 3.55e-17 | 79.3 |
| Msa0466430 | MtrunA17_Chr5g0399491 | 45.714 | 105 | 50 | 1 | 49 | 153 | 126 | 223 | 4.42e-17 | 79.0 |
| Msa0466430 | MtrunA17_Chr7g0258831 | 45.283 | 106 | 49 | 2 | 48 | 153 | 151 | 247 | 4.46e-17 | 79.0 |
| Msa0466430 | MtrunA17_Chr2g0308611 | 47.368 | 95 | 43 | 1 | 59 | 153 | 200 | 287 | 6.36e-17 | 79.0 |
| Msa0466430 | MtrunA17_Chr5g0400781 | 45.283 | 106 | 50 | 2 | 48 | 153 | 113 | 210 | 2.65e-16 | 76.3 |
| Msa0466430 | MtrunA17_Chr1g0151971 | 46.316 | 95 | 44 | 1 | 59 | 153 | 130 | 217 | 7.03e-16 | 75.5 |
| Msa0466430 | MtrunA17_Chr8g0335131 | 47.872 | 94 | 45 | 1 | 59 | 152 | 146 | 235 | 1.05e-15 | 75.1 |
| Msa0466430 | MtrunA17_Chr4g0044091 | 44.211 | 95 | 46 | 1 | 59 | 153 | 65 | 152 | 2.03e-14 | 69.7 |
| Msa0466430 | MtrunA17_Chr3g0135331 | 47.297 | 74 | 39 | 0 | 57 | 130 | 143 | 216 | 1.49e-13 | 68.9 |
| Msa0466430 | MtrunA17_Chr2g0299031 | 43.158 | 95 | 47 | 1 | 59 | 153 | 82 | 169 | 9.34e-13 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0466430 | AT5G65310.1 | 53.571 | 168 | 65 | 4 | 1 | 155 | 1 | 168 | 3.25e-49 | 164 |
| Msa0466430 | AT5G65310.2 | 59.441 | 143 | 47 | 2 | 24 | 155 | 8 | 150 | 2.02e-48 | 162 |
| Msa0466430 | AT4G40060.1 | 34.740 | 308 | 124 | 9 | 1 | 255 | 1 | 284 | 4.73e-44 | 150 |
| Msa0466430 | AT2G22430.1 | 49.057 | 159 | 75 | 2 | 1 | 155 | 2 | 158 | 1.84e-42 | 147 |
| Msa0466430 | AT1G69780.1 | 60.163 | 123 | 48 | 1 | 46 | 168 | 72 | 193 | 1.68e-39 | 139 |
| Msa0466430 | AT5G15150.1 | 58.594 | 128 | 49 | 3 | 42 | 166 | 95 | 221 | 1.03e-37 | 134 |
| Msa0466430 | AT1G26960.1 | 43.500 | 200 | 98 | 5 | 41 | 235 | 53 | 242 | 2.25e-36 | 129 |
| Msa0466430 | AT3G01220.1 | 43.548 | 186 | 95 | 4 | 44 | 224 | 70 | 250 | 2.56e-35 | 127 |
| Msa0466430 | AT3G01470.1 | 60.000 | 100 | 40 | 0 | 56 | 155 | 65 | 164 | 7.53e-33 | 121 |
| Msa0466430 | AT3G61890.1 | 39.161 | 143 | 82 | 2 | 62 | 202 | 33 | 172 | 3.83e-27 | 105 |
| Msa0466430 | AT2G46680.1 | 50.538 | 93 | 46 | 0 | 60 | 152 | 33 | 125 | 4.88e-26 | 102 |
| Msa0466430 | AT1G27045.1 | 53.535 | 99 | 46 | 0 | 57 | 155 | 66 | 164 | 5.76e-26 | 102 |
| Msa0466430 | AT1G27045.5 | 53.535 | 99 | 46 | 0 | 57 | 155 | 23 | 121 | 8.01e-26 | 100 |
| Msa0466430 | AT1G27045.3 | 53.535 | 99 | 46 | 0 | 57 | 155 | 23 | 121 | 8.01e-26 | 100 |
| Msa0466430 | AT1G27045.2 | 53.535 | 99 | 46 | 0 | 57 | 155 | 15 | 113 | 8.98e-26 | 100 |
| Msa0466430 | AT2G46680.2 | 48.958 | 96 | 48 | 1 | 60 | 154 | 33 | 128 | 9.33e-25 | 99.4 |
| Msa0466430 | AT1G27045.4 | 52.632 | 95 | 45 | 0 | 57 | 151 | 66 | 160 | 2.24e-24 | 98.2 |
| Msa0466430 | AT2G18550.1 | 38.922 | 167 | 79 | 4 | 59 | 217 | 61 | 212 | 4.45e-22 | 91.3 |
| Msa0466430 | AT5G03790.1 | 43.103 | 116 | 59 | 1 | 59 | 167 | 77 | 192 | 1.73e-21 | 90.1 |
| Msa0466430 | AT4G36740.1 | 46.903 | 113 | 56 | 1 | 52 | 160 | 48 | 160 | 1.03e-20 | 87.8 |
| Msa0466430 | AT4G36740.2 | 46.903 | 113 | 56 | 1 | 52 | 160 | 49 | 161 | 1.07e-20 | 87.8 |
| Msa0466430 | AT5G03790.2 | 52.439 | 82 | 39 | 0 | 59 | 140 | 77 | 158 | 1.49e-20 | 86.7 |
| Msa0466430 | AT5G66700.1 | 34.857 | 175 | 102 | 5 | 46 | 217 | 60 | 225 | 3.84e-20 | 86.3 |
| Msa0466430 | AT2G36610.1 | 45.545 | 101 | 47 | 1 | 58 | 150 | 70 | 170 | 1.02e-19 | 84.3 |
| Msa0466430 | AT5G53980.1 | 41.237 | 97 | 57 | 0 | 59 | 155 | 11 | 107 | 2.75e-18 | 79.7 |
| Msa0466430 | AT2G01430.1 | 36.879 | 141 | 81 | 2 | 45 | 184 | 125 | 258 | 3.46e-18 | 82.0 |
| Msa0466430 | AT5G06710.1 | 40.741 | 135 | 73 | 3 | 20 | 153 | 152 | 280 | 3.21e-17 | 80.1 |
| Msa0466430 | AT4G17460.1 | 41.270 | 126 | 63 | 3 | 32 | 153 | 104 | 222 | 5.37e-17 | 79.0 |
| Msa0466430 | AT5G47370.1 | 41.538 | 130 | 63 | 2 | 23 | 152 | 103 | 219 | 5.78e-17 | 79.0 |
| Msa0466430 | AT2G44910.1 | 46.316 | 95 | 44 | 1 | 59 | 153 | 163 | 250 | 5.70e-16 | 76.6 |
| Msa0466430 | AT4G37790.1 | 42.241 | 116 | 59 | 2 | 38 | 153 | 106 | 213 | 7.85e-16 | 75.5 |
| Msa0466430 | AT4G16780.1 | 44.660 | 103 | 49 | 2 | 51 | 153 | 122 | 216 | 1.97e-15 | 74.7 |
| Msa0466430 | AT3G60390.1 | 41.284 | 109 | 57 | 1 | 45 | 153 | 148 | 249 | 2.19e-15 | 74.7 |
| Msa0466430 | AT2G22800.1 | 39.837 | 123 | 72 | 2 | 48 | 169 | 101 | 222 | 9.38e-15 | 72.4 |
| Msa0466430 | AT1G70920.2 | 37.600 | 125 | 76 | 1 | 20 | 144 | 2 | 124 | 1.36e-12 | 64.7 |
| Msa0466430 | AT2G01430.2 | 43.529 | 85 | 44 | 1 | 45 | 125 | 125 | 209 | 1.41e-12 | 65.5 |
| Msa0466430 | AT1G70920.1 | 37.600 | 125 | 76 | 1 | 20 | 144 | 32 | 154 | 1.50e-12 | 65.1 |
| Msa0466430 | AT5G06710.4 | 39.560 | 91 | 54 | 1 | 20 | 110 | 152 | 241 | 1.11e-11 | 63.9 |
Find 57 sgRNAs with CRISPR-Local
Find 138 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAGTTCAATGATGAATT+TGG | 0.158147 | 3_3:-67054118 | Msa0466430:CDS |
| TCGTTCGTGCTCGACGATTT+TGG | 0.160811 | 3_3:+67054522 | None:intergenic |
| CTACAAGGGAAGATCTATTT+TGG | 0.180223 | 3_3:-67054950 | Msa0466430:five_prime_UTR |
| CTTTCTATACCTCTTGAAAT+TGG | 0.202435 | 3_3:+67054222 | None:intergenic |
| TTGTAGAACACTACTAATTT+AGG | 0.216370 | 3_3:+67054967 | None:intergenic |
| GTGAAGTTAGCTGAAGATTT+AGG | 0.236761 | 3_3:-67054575 | Msa0466430:CDS |
| AACCTTAAGAACATCAAAAT+TGG | 0.244715 | 3_3:+67054460 | None:intergenic |
| AACCTAGACAAGTTTCAATT+TGG | 0.262579 | 3_3:-67054547 | Msa0466430:CDS |
| ATAATCTCTTTCCAATTGTT+TGG | 0.328373 | 3_3:+67054496 | None:intergenic |
| TGTTACATAGGAATTATTAT+AGG | 0.331737 | 3_3:-67055136 | Msa0466430:five_prime_UTR |
| TAATTCAAGTGGTGTAATTA+AGG | 0.336290 | 3_3:-67054184 | Msa0466430:CDS |
| TTTAGAAAAGAGCTTTGAAT+TGG | 0.355867 | 3_3:-67054624 | Msa0466430:CDS |
| GTTCAATAACTCGGAAACTA+TGG | 0.361291 | 3_3:-67054912 | Msa0466430:CDS |
| GCGTATGCAACTTGACTTGC+TGG | 0.368962 | 3_3:-67055181 | Msa0466430:five_prime_UTR |
| GATTCTCCTATATGTTTCAA+TGG | 0.381447 | 3_3:-67054147 | Msa0466430:CDS |
| CATCTATATTATCCCAACTT+TGG | 0.396581 | 3_3:-67054998 | Msa0466430:five_prime_UTR |
| TCAGAATCAATTTATGAGAA+TGG | 0.408136 | 3_3:-67054055 | Msa0466430:CDS |
| AGTAATTGTGTGTGTGGTTG+AGG | 0.446780 | 3_3:-67055074 | Msa0466430:five_prime_UTR |
| ACCAAATTCATCATTGAACT+TGG | 0.453246 | 3_3:+67054117 | None:intergenic |
| TTCTATATATACCTTTGGAT+TGG | 0.453479 | 3_3:+67054870 | None:intergenic |
| TATACCTTTGGATTGGTACA+TGG | 0.467749 | 3_3:+67054877 | None:intergenic |
| TGTTATATGATTTGTTACAT+AGG | 0.468479 | 3_3:-67055148 | Msa0466430:five_prime_UTR |
| AAAGAACCATTGAAACATAT+AGG | 0.475600 | 3_3:+67054141 | None:intergenic |
| TTTGCTTGATCTTATGCTGT+TGG | 0.476451 | 3_3:+67055040 | None:intergenic |
| GCTTGATCTTATGCTGTTGG+TGG | 0.477450 | 3_3:+67055043 | None:intergenic |
| ACGAACGAAAACCAAACAAT+TGG | 0.484787 | 3_3:-67054507 | Msa0466430:CDS |
| TTAGGAAACAGAACCAAAGT+TGG | 0.488033 | 3_3:+67054985 | None:intergenic |
| AGAGGATAGGACAGGACATA+TGG | 0.489411 | 3_3:+67055212 | None:intergenic |
| TAGGAAACAGAACCAAAGTT+GGG | 0.490342 | 3_3:+67054986 | None:intergenic |
| TCACTTGGAATTACAAAGTA+GGG | 0.493392 | 3_3:+67053974 | None:intergenic |
| AGATATCATTTATGCTCACT+TGG | 0.500627 | 3_3:+67053959 | None:intergenic |
| GTAACAAATCATATAACAAA+AGG | 0.508333 | 3_3:+67055153 | None:intergenic |
| GAATGAGACTCTTACTAGAA+AGG | 0.510168 | 3_3:-67054414 | Msa0466430:intron |
| TATTATAGGAATCCACCCTA+TGG | 0.521162 | 3_3:-67055122 | Msa0466430:five_prime_UTR |
| CAAGAAGATAGCTATGAAGA+TGG | 0.532967 | 3_3:-67054698 | Msa0466430:CDS |
| TGAAGATGGTAGTTCAATGT+TGG | 0.535009 | 3_3:-67054684 | Msa0466430:CDS |
| TGCAAATGCAGAGGTGGATG+TGG | 0.541032 | 3_3:-67054783 | Msa0466430:intron |
| CTCACTTGGAATTACAAAGT+AGG | 0.541092 | 3_3:+67053973 | None:intergenic |
| AACCAAATTGAAACTTGTCT+AGG | 0.545141 | 3_3:+67054545 | None:intergenic |
| ATTTCAAGAGGTATAGAAAG+AGG | 0.548836 | 3_3:-67054219 | Msa0466430:CDS |
| TAAATTAGTAGTGTTCTACA+AGG | 0.550838 | 3_3:-67054965 | Msa0466430:five_prime_UTR |
| GATCAGAGGAATGAGACAAA+AGG | 0.552396 | 3_3:-67054761 | Msa0466430:CDS |
| TTGGAGAAGAAAAGAAGACT+TGG | 0.569876 | 3_3:-67054665 | Msa0466430:CDS |
| CTTTCCATGTACCAATCCAA+AGG | 0.573223 | 3_3:-67054881 | Msa0466430:intron |
| GTTCATTATTATGATTCAAG+AGG | 0.577370 | 3_3:-67054096 | Msa0466430:CDS |
| GTAGAATGTCCAATTTCAAG+AGG | 0.608484 | 3_3:-67054231 | Msa0466430:CDS |
| AATGAAGAGGTTCAATAACT+CGG | 0.609369 | 3_3:-67054921 | Msa0466430:CDS |
| CAGAGGTGGATGTGGATCAG+AGG | 0.615698 | 3_3:-67054775 | Msa0466430:CDS |
| AATAGTAGTAATTGTGTGTG+TGG | 0.626966 | 3_3:-67055080 | Msa0466430:five_prime_UTR |
| GAATCAATTTATGAGAATGG+AGG | 0.629666 | 3_3:-67054052 | Msa0466430:CDS |
| AGTTACACAGAGGATAGGAC+AGG | 0.636924 | 3_3:+67055204 | None:intergenic |
| CACTTGGAATTACAAAGTAG+GGG | 0.640798 | 3_3:+67053975 | None:intergenic |
| TCAAGAGGTATAGAAAGAGG+AGG | 0.641487 | 3_3:-67054216 | Msa0466430:CDS |
| TACGCAGTTACACAGAGGAT+AGG | 0.660218 | 3_3:+67055199 | None:intergenic |
| GGTTCAGAAAGTAATTCAAG+TGG | 0.665455 | 3_3:-67054195 | Msa0466430:CDS |
| AAATTAGTAGTGTTCTACAA+GGG | 0.702473 | 3_3:-67054964 | Msa0466430:five_prime_UTR |
| TTGCATACGCAGTTACACAG+AGG | 0.771433 | 3_3:+67055194 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CACACAAAATAAAATTAAAA+AGG | + | chr3_3:67054352-67054371 | None:intergenic | 15.0% |
| !! | CACACAAAATAAAATTAAAA+AGG | + | chr3_3:67054352-67054371 | None:intergenic | 15.0% |
| !! | GTAACAAATCATATAACAAA+AGG | + | chr3_3:67054036-67054055 | None:intergenic | 20.0% |
| !!! | TGTTATATGATTTGTTACAT+AGG | - | chr3_3:67054038-67054057 | Msa0466430:CDS | 20.0% |
| !! | TGTTACATAGGAATTATTAT+AGG | - | chr3_3:67054050-67054069 | Msa0466430:CDS | 20.0% |
| !!! | TATTCTAATGTTTTTCCATA+GGG | + | chr3_3:67054082-67054101 | None:intergenic | 20.0% |
| !!! | ATATTCTAATGTTTTTCCAT+AGG | + | chr3_3:67054083-67054102 | None:intergenic | 20.0% |
| !! | ATTACTTCTATATATACCTT+TGG | + | chr3_3:67054324-67054343 | None:intergenic | 20.0% |
| !!! | TTATTTTGTGTGTAATTTTG+TGG | - | chr3_3:67054360-67054379 | Msa0466430:intron | 20.0% |
| !! | ACTTGTTTGATTACAAAAAT+AGG | - | chr3_3:67055257-67055276 | Msa0466430:five_prime_UTR | 20.0% |
| !! | GTAACAAATCATATAACAAA+AGG | + | chr3_3:67054036-67054055 | None:intergenic | 20.0% |
| !!! | TGTTATATGATTTGTTACAT+AGG | - | chr3_3:67054038-67054057 | Msa0466430:CDS | 20.0% |
| !! | TGTTACATAGGAATTATTAT+AGG | - | chr3_3:67054050-67054069 | Msa0466430:CDS | 20.0% |
| !!! | TATTCTAATGTTTTTCCATA+GGG | + | chr3_3:67054082-67054101 | None:intergenic | 20.0% |
| !!! | ATATTCTAATGTTTTTCCAT+AGG | + | chr3_3:67054083-67054102 | None:intergenic | 20.0% |
| !! | ATTACTTCTATATATACCTT+TGG | + | chr3_3:67054324-67054343 | None:intergenic | 20.0% |
| !!! | TTATTTTGTGTGTAATTTTG+TGG | - | chr3_3:67054360-67054379 | Msa0466430:intron | 20.0% |
| !! | ACTTGTTTGATTACAAAAAT+AGG | - | chr3_3:67055257-67055276 | Msa0466430:five_prime_UTR | 20.0% |
| ! | TTGTAGAACACTACTAATTT+AGG | + | chr3_3:67054222-67054241 | None:intergenic | 25.0% |
| ! | TAAATTAGTAGTGTTCTACA+AGG | - | chr3_3:67054221-67054240 | Msa0466430:CDS | 25.0% |
| ! | AAATTAGTAGTGTTCTACAA+GGG | - | chr3_3:67054222-67054241 | Msa0466430:CDS | 25.0% |
| ! | TTCTATATATACCTTTGGAT+TGG | + | chr3_3:67054319-67054338 | None:intergenic | 25.0% |
| !!! | TTTAGAAAAGAGCTTTGAAT+TGG | - | chr3_3:67054562-67054581 | Msa0466430:CDS | 25.0% |
| ! | ATAATCTCTTTCCAATTGTT+TGG | + | chr3_3:67054693-67054712 | None:intergenic | 25.0% |
| ! | AACCTTAAGAACATCAAAAT+TGG | + | chr3_3:67054729-67054748 | None:intergenic | 25.0% |
| ! | TAATTCAAGTGGTGTAATTA+AGG | - | chr3_3:67055002-67055021 | Msa0466430:five_prime_UTR | 25.0% |
| ! | AAAGAACCATTGAAACATAT+AGG | + | chr3_3:67055048-67055067 | None:intergenic | 25.0% |
| ! | GTTCATTATTATGATTCAAG+AGG | - | chr3_3:67055090-67055109 | Msa0466430:five_prime_UTR | 25.0% |
| ! | TCAGAATCAATTTATGAGAA+TGG | - | chr3_3:67055131-67055150 | Msa0466430:five_prime_UTR | 25.0% |
| ! | TTGTAGAACACTACTAATTT+AGG | + | chr3_3:67054222-67054241 | None:intergenic | 25.0% |
| ! | TAAATTAGTAGTGTTCTACA+AGG | - | chr3_3:67054221-67054240 | Msa0466430:CDS | 25.0% |
| ! | AAATTAGTAGTGTTCTACAA+GGG | - | chr3_3:67054222-67054241 | Msa0466430:CDS | 25.0% |
| ! | TTCTATATATACCTTTGGAT+TGG | + | chr3_3:67054319-67054338 | None:intergenic | 25.0% |
| !!! | TTTAGAAAAGAGCTTTGAAT+TGG | - | chr3_3:67054562-67054581 | Msa0466430:CDS | 25.0% |
| ! | ATAATCTCTTTCCAATTGTT+TGG | + | chr3_3:67054693-67054712 | None:intergenic | 25.0% |
| ! | AACCTTAAGAACATCAAAAT+TGG | + | chr3_3:67054729-67054748 | None:intergenic | 25.0% |
| ! | TAATTCAAGTGGTGTAATTA+AGG | - | chr3_3:67055002-67055021 | Msa0466430:five_prime_UTR | 25.0% |
| ! | AAAGAACCATTGAAACATAT+AGG | + | chr3_3:67055048-67055067 | None:intergenic | 25.0% |
| ! | GTTCATTATTATGATTCAAG+AGG | - | chr3_3:67055090-67055109 | Msa0466430:five_prime_UTR | 25.0% |
| ! | TCAGAATCAATTTATGAGAA+TGG | - | chr3_3:67055131-67055150 | Msa0466430:five_prime_UTR | 25.0% |
| AATAGTAGTAATTGTGTGTG+TGG | - | chr3_3:67054106-67054125 | Msa0466430:CDS | 30.0% | |
| CATCTATATTATCCCAACTT+TGG | - | chr3_3:67054188-67054207 | Msa0466430:CDS | 30.0% | |
| !! | ATTTTGGTCACATAATGAAG+AGG | - | chr3_3:67054252-67054271 | Msa0466430:CDS | 30.0% |
| AATGAAGAGGTTCAATAACT+CGG | - | chr3_3:67054265-67054284 | Msa0466430:CDS | 30.0% | |
| AACCTAGACAAGTTTCAATT+TGG | - | chr3_3:67054639-67054658 | Msa0466430:CDS | 30.0% | |
| AACCAAATTGAAACTTGTCT+AGG | + | chr3_3:67054644-67054663 | None:intergenic | 30.0% | |
| !! | GTCCAATTTTGATGTTCTTA+AGG | - | chr3_3:67054724-67054743 | Msa0466430:CDS | 30.0% |
| CTTTCTATACCTCTTGAAAT+TGG | + | chr3_3:67054967-67054986 | None:intergenic | 30.0% | |
| ! | ATTTCAAGAGGTATAGAAAG+AGG | - | chr3_3:67054967-67054986 | Msa0466430:five_prime_UTR | 30.0% |
| GATTCTCCTATATGTTTCAA+TGG | - | chr3_3:67055039-67055058 | Msa0466430:five_prime_UTR | 30.0% | |
| ACCAAATTCATCATTGAACT+TGG | + | chr3_3:67055072-67055091 | None:intergenic | 30.0% | |
| GAATCAATTTATGAGAATGG+AGG | - | chr3_3:67055134-67055153 | Msa0466430:five_prime_UTR | 30.0% | |
| TCACTTGGAATTACAAAGTA+GGG | + | chr3_3:67055215-67055234 | None:intergenic | 30.0% | |
| AGATATCATTTATGCTCACT+TGG | + | chr3_3:67055230-67055249 | None:intergenic | 30.0% | |
| AATAGTAGTAATTGTGTGTG+TGG | - | chr3_3:67054106-67054125 | Msa0466430:CDS | 30.0% | |
| CATCTATATTATCCCAACTT+TGG | - | chr3_3:67054188-67054207 | Msa0466430:CDS | 30.0% | |
| !! | ATTTTGGTCACATAATGAAG+AGG | - | chr3_3:67054252-67054271 | Msa0466430:CDS | 30.0% |
| AATGAAGAGGTTCAATAACT+CGG | - | chr3_3:67054265-67054284 | Msa0466430:CDS | 30.0% | |
| AACCTAGACAAGTTTCAATT+TGG | - | chr3_3:67054639-67054658 | Msa0466430:CDS | 30.0% | |
| AACCAAATTGAAACTTGTCT+AGG | + | chr3_3:67054644-67054663 | None:intergenic | 30.0% | |
| !! | GTCCAATTTTGATGTTCTTA+AGG | - | chr3_3:67054724-67054743 | Msa0466430:CDS | 30.0% |
| CTTTCTATACCTCTTGAAAT+TGG | + | chr3_3:67054967-67054986 | None:intergenic | 30.0% | |
| ! | ATTTCAAGAGGTATAGAAAG+AGG | - | chr3_3:67054967-67054986 | Msa0466430:five_prime_UTR | 30.0% |
| GATTCTCCTATATGTTTCAA+TGG | - | chr3_3:67055039-67055058 | Msa0466430:five_prime_UTR | 30.0% | |
| ACCAAATTCATCATTGAACT+TGG | + | chr3_3:67055072-67055091 | None:intergenic | 30.0% | |
| GAATCAATTTATGAGAATGG+AGG | - | chr3_3:67055134-67055153 | Msa0466430:five_prime_UTR | 30.0% | |
| TCACTTGGAATTACAAAGTA+GGG | + | chr3_3:67055215-67055234 | None:intergenic | 30.0% | |
| AGATATCATTTATGCTCACT+TGG | + | chr3_3:67055230-67055249 | None:intergenic | 30.0% | |
| TATTATAGGAATCCACCCTA+TGG | - | chr3_3:67054064-67054083 | Msa0466430:CDS | 35.0% | |
| ! | TCTAATGTTTTTCCATAGGG+TGG | + | chr3_3:67054079-67054098 | None:intergenic | 35.0% |
| TTTGCTTGATCTTATGCTGT+TGG | + | chr3_3:67054149-67054168 | None:intergenic | 35.0% | |
| TAGGAAACAGAACCAAAGTT+GGG | + | chr3_3:67054203-67054222 | None:intergenic | 35.0% | |
| TTAGGAAACAGAACCAAAGT+TGG | + | chr3_3:67054204-67054223 | None:intergenic | 35.0% | |
| ! | CTACAAGGGAAGATCTATTT+TGG | - | chr3_3:67054236-67054255 | Msa0466430:CDS | 35.0% |
| GTTCAATAACTCGGAAACTA+TGG | - | chr3_3:67054274-67054293 | Msa0466430:CDS | 35.0% | |
| !! | TATACCTTTGGATTGGTACA+TGG | + | chr3_3:67054312-67054331 | None:intergenic | 35.0% |
| TTCATTCTTTGCAAATGCAG+AGG | - | chr3_3:67054394-67054413 | Msa0466430:intron | 35.0% | |
| CAAGAAGATAGCTATGAAGA+TGG | - | chr3_3:67054488-67054507 | Msa0466430:CDS | 35.0% | |
| TGAAGATGGTAGTTCAATGT+TGG | - | chr3_3:67054502-67054521 | Msa0466430:CDS | 35.0% | |
| TTGGAGAAGAAAAGAAGACT+TGG | - | chr3_3:67054521-67054540 | Msa0466430:CDS | 35.0% | |
| GTGAAGTTAGCTGAAGATTT+AGG | - | chr3_3:67054611-67054630 | Msa0466430:CDS | 35.0% | |
| ACGAACGAAAACCAAACAAT+TGG | - | chr3_3:67054679-67054698 | Msa0466430:CDS | 35.0% | |
| GAATGAGACTCTTACTAGAA+AGG | - | chr3_3:67054772-67054791 | Msa0466430:CDS | 35.0% | |
| GTAGAATGTCCAATTTCAAG+AGG | - | chr3_3:67054955-67054974 | Msa0466430:five_prime_UTR | 35.0% | |
| GGTTCAGAAAGTAATTCAAG+TGG | - | chr3_3:67054991-67055010 | Msa0466430:five_prime_UTR | 35.0% | |
| GCCAAGTTCAATGATGAATT+TGG | - | chr3_3:67055068-67055087 | Msa0466430:five_prime_UTR | 35.0% | |
| CACTTGGAATTACAAAGTAG+GGG | + | chr3_3:67055214-67055233 | None:intergenic | 35.0% | |
| CTCACTTGGAATTACAAAGT+AGG | + | chr3_3:67055216-67055235 | None:intergenic | 35.0% | |
| TATTATAGGAATCCACCCTA+TGG | - | chr3_3:67054064-67054083 | Msa0466430:CDS | 35.0% | |
| ! | TCTAATGTTTTTCCATAGGG+TGG | + | chr3_3:67054079-67054098 | None:intergenic | 35.0% |
| TTTGCTTGATCTTATGCTGT+TGG | + | chr3_3:67054149-67054168 | None:intergenic | 35.0% | |
| TAGGAAACAGAACCAAAGTT+GGG | + | chr3_3:67054203-67054222 | None:intergenic | 35.0% | |
| TTAGGAAACAGAACCAAAGT+TGG | + | chr3_3:67054204-67054223 | None:intergenic | 35.0% | |
| ! | CTACAAGGGAAGATCTATTT+TGG | - | chr3_3:67054236-67054255 | Msa0466430:CDS | 35.0% |
| GTTCAATAACTCGGAAACTA+TGG | - | chr3_3:67054274-67054293 | Msa0466430:CDS | 35.0% | |
| !! | TATACCTTTGGATTGGTACA+TGG | + | chr3_3:67054312-67054331 | None:intergenic | 35.0% |
| TTCATTCTTTGCAAATGCAG+AGG | - | chr3_3:67054394-67054413 | Msa0466430:intron | 35.0% | |
| CAAGAAGATAGCTATGAAGA+TGG | - | chr3_3:67054488-67054507 | Msa0466430:CDS | 35.0% | |
| TGAAGATGGTAGTTCAATGT+TGG | - | chr3_3:67054502-67054521 | Msa0466430:CDS | 35.0% | |
| TTGGAGAAGAAAAGAAGACT+TGG | - | chr3_3:67054521-67054540 | Msa0466430:CDS | 35.0% | |
| GTGAAGTTAGCTGAAGATTT+AGG | - | chr3_3:67054611-67054630 | Msa0466430:CDS | 35.0% | |
| ACGAACGAAAACCAAACAAT+TGG | - | chr3_3:67054679-67054698 | Msa0466430:CDS | 35.0% | |
| GAATGAGACTCTTACTAGAA+AGG | - | chr3_3:67054772-67054791 | Msa0466430:CDS | 35.0% | |
| GTAGAATGTCCAATTTCAAG+AGG | - | chr3_3:67054955-67054974 | Msa0466430:five_prime_UTR | 35.0% | |
| GGTTCAGAAAGTAATTCAAG+TGG | - | chr3_3:67054991-67055010 | Msa0466430:five_prime_UTR | 35.0% | |
| GCCAAGTTCAATGATGAATT+TGG | - | chr3_3:67055068-67055087 | Msa0466430:five_prime_UTR | 35.0% | |
| CACTTGGAATTACAAAGTAG+GGG | + | chr3_3:67055214-67055233 | None:intergenic | 35.0% | |
| CTCACTTGGAATTACAAAGT+AGG | + | chr3_3:67055216-67055235 | None:intergenic | 35.0% | |
| AGTAATTGTGTGTGTGGTTG+AGG | - | chr3_3:67054112-67054131 | Msa0466430:CDS | 40.0% | |
| CTTTCCATGTACCAATCCAA+AGG | - | chr3_3:67054305-67054324 | Msa0466430:intron | 40.0% | |
| ATTCTTTGCAAATGCAGAGG+TGG | - | chr3_3:67054397-67054416 | Msa0466430:intron | 40.0% | |
| GATCAGAGGAATGAGACAAA+AGG | - | chr3_3:67054425-67054444 | Msa0466430:CDS | 40.0% | |
| !! | GCTAACTTCACTTTTCTCTC+TGG | + | chr3_3:67054602-67054621 | None:intergenic | 40.0% |
| ! | TCAAGAGGTATAGAAAGAGG+AGG | - | chr3_3:67054970-67054989 | Msa0466430:five_prime_UTR | 40.0% |
| AGTAATTGTGTGTGTGGTTG+AGG | - | chr3_3:67054112-67054131 | Msa0466430:CDS | 40.0% | |
| CTTTCCATGTACCAATCCAA+AGG | - | chr3_3:67054305-67054324 | Msa0466430:intron | 40.0% | |
| ATTCTTTGCAAATGCAGAGG+TGG | - | chr3_3:67054397-67054416 | Msa0466430:intron | 40.0% | |
| GATCAGAGGAATGAGACAAA+AGG | - | chr3_3:67054425-67054444 | Msa0466430:CDS | 40.0% | |
| !! | GCTAACTTCACTTTTCTCTC+TGG | + | chr3_3:67054602-67054621 | None:intergenic | 40.0% |
| ! | TCAAGAGGTATAGAAAGAGG+AGG | - | chr3_3:67054970-67054989 | Msa0466430:five_prime_UTR | 40.0% |
| AGAGGATAGGACAGGACATA+TGG | + | chr3_3:67053977-67053996 | None:intergenic | 45.0% | |
| AGTTACACAGAGGATAGGAC+AGG | + | chr3_3:67053985-67054004 | None:intergenic | 45.0% | |
| TACGCAGTTACACAGAGGAT+AGG | + | chr3_3:67053990-67054009 | None:intergenic | 45.0% | |
| TTGCATACGCAGTTACACAG+AGG | + | chr3_3:67053995-67054014 | None:intergenic | 45.0% | |
| GCTTGATCTTATGCTGTTGG+TGG | + | chr3_3:67054146-67054165 | None:intergenic | 45.0% | |
| AGAGGATAGGACAGGACATA+TGG | + | chr3_3:67053977-67053996 | None:intergenic | 45.0% | |
| AGTTACACAGAGGATAGGAC+AGG | + | chr3_3:67053985-67054004 | None:intergenic | 45.0% | |
| TACGCAGTTACACAGAGGAT+AGG | + | chr3_3:67053990-67054009 | None:intergenic | 45.0% | |
| TTGCATACGCAGTTACACAG+AGG | + | chr3_3:67053995-67054014 | None:intergenic | 45.0% | |
| GCTTGATCTTATGCTGTTGG+TGG | + | chr3_3:67054146-67054165 | None:intergenic | 45.0% | |
| !! | GCGTATGCAACTTGACTTGC+TGG | - | chr3_3:67054005-67054024 | Msa0466430:CDS | 50.0% |
| TGCAAATGCAGAGGTGGATG+TGG | - | chr3_3:67054403-67054422 | Msa0466430:intron | 50.0% | |
| ! | TCGTTCGTGCTCGACGATTT+TGG | + | chr3_3:67054667-67054686 | None:intergenic | 50.0% |
| !! | GCGTATGCAACTTGACTTGC+TGG | - | chr3_3:67054005-67054024 | Msa0466430:CDS | 50.0% |
| TGCAAATGCAGAGGTGGATG+TGG | - | chr3_3:67054403-67054422 | Msa0466430:intron | 50.0% | |
| ! | TCGTTCGTGCTCGACGATTT+TGG | + | chr3_3:67054667-67054686 | None:intergenic | 50.0% |
| CAGAGGTGGATGTGGATCAG+AGG | - | chr3_3:67054411-67054430 | Msa0466430:intron | 55.0% | |
| CAGAGGTGGATGTGGATCAG+AGG | - | chr3_3:67054411-67054430 | Msa0466430:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 67053874 | 67055334 | 67053874 | ID=Msa0466430;Name=Msa0466430 |
| chr3_3 | mRNA | 67053874 | 67055334 | 67053874 | ID=Msa0466430-mRNA-1;Parent=Msa0466430;Name=Msa0466430-mRNA-1;_AED=0.04;_eAED=0.04;_QI=392|1|1|1|1|1|3|110|255 |
| chr3_3 | exon | 67053874 | 67054310 | 67053874 | ID=Msa0466430-mRNA-1:exon:15406;Parent=Msa0466430-mRNA-1 |
| chr3_3 | exon | 67054415 | 67054794 | 67054415 | ID=Msa0466430-mRNA-1:exon:15405;Parent=Msa0466430-mRNA-1 |
| chr3_3 | exon | 67054882 | 67055334 | 67054882 | ID=Msa0466430-mRNA-1:exon:15404;Parent=Msa0466430-mRNA-1 |
| chr3_3 | five_prime_UTR | 67054943 | 67055334 | 67054943 | ID=Msa0466430-mRNA-1:five_prime_utr;Parent=Msa0466430-mRNA-1 |
| chr3_3 | CDS | 67054882 | 67054942 | 67054882 | ID=Msa0466430-mRNA-1:cds;Parent=Msa0466430-mRNA-1 |
| chr3_3 | CDS | 67054415 | 67054794 | 67054415 | ID=Msa0466430-mRNA-1:cds;Parent=Msa0466430-mRNA-1 |
| chr3_3 | CDS | 67053984 | 67054310 | 67053984 | ID=Msa0466430-mRNA-1:cds;Parent=Msa0466430-mRNA-1 |
| chr3_3 | three_prime_UTR | 67053874 | 67053983 | 67053874 | ID=Msa0466430-mRNA-1:three_prime_utr;Parent=Msa0466430-mRNA-1 |
| Gene Sequence |
| Protein sequence |
