Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145160 | XP_003601381.1 | 97.255 | 255 | 7 | 0 | 1 | 255 | 1 | 255 | 1.58e-180 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145160 | sp|P46667|ATHB5_ARATH | 53.571 | 168 | 65 | 4 | 1 | 155 | 1 | 168 | 3.67e-48 | 164 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145160 | G7J6Q0 | 97.255 | 255 | 7 | 0 | 1 | 255 | 1 | 255 | 0.0 | 506 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1145160 | TF | HB-HD-ZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0466430 | Msa1145160 | 0.890022 | 1.433502e-73 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145160 | MtrunA17_Chr3g0119291 | 97.255 | 255 | 7 | 0 | 1 | 255 | 1 | 255 | 0.0 | 506 |
| Msa1145160 | MtrunA17_Chr8g0381741 | 37.987 | 308 | 132 | 9 | 1 | 255 | 1 | 302 | 2.16e-54 | 177 |
| Msa1145160 | MtrunA17_Chr3g0123691 | 38.851 | 296 | 137 | 8 | 1 | 255 | 1 | 293 | 1.70e-41 | 144 |
| Msa1145160 | MtrunA17_Chr6g0453021 | 45.960 | 198 | 92 | 4 | 42 | 238 | 82 | 265 | 4.68e-40 | 139 |
| Msa1145160 | MtrunA17_Chr8g0362151 | 57.724 | 123 | 51 | 1 | 46 | 168 | 64 | 185 | 5.79e-38 | 134 |
| Msa1145160 | MtrunA17_Chr5g0416391 | 57.600 | 125 | 52 | 1 | 44 | 168 | 62 | 185 | 1.29e-37 | 133 |
| Msa1145160 | MtrunA17_Chr5g0415941 | 56.667 | 120 | 52 | 0 | 47 | 166 | 75 | 194 | 1.44e-37 | 134 |
| Msa1145160 | MtrunA17_Chr4g0060031 | 63.810 | 105 | 38 | 0 | 58 | 162 | 94 | 198 | 1.07e-35 | 129 |
| Msa1145160 | MtrunA17_Chr8g0362751 | 61.538 | 104 | 40 | 0 | 59 | 162 | 89 | 192 | 1.86e-35 | 127 |
| Msa1145160 | MtrunA17_Chr6g0450991 | 61.682 | 107 | 41 | 0 | 58 | 164 | 66 | 172 | 1.95e-34 | 125 |
| Msa1145160 | MtrunA17_Chr7g0217111 | 52.713 | 129 | 57 | 2 | 47 | 174 | 71 | 196 | 4.80e-33 | 121 |
| Msa1145160 | MtrunA17_Chr7g0265521 | 47.015 | 134 | 69 | 2 | 52 | 185 | 56 | 187 | 2.91e-29 | 110 |
| Msa1145160 | MtrunA17_Chr1g0179581 | 56.627 | 83 | 36 | 0 | 58 | 140 | 27 | 109 | 2.35e-25 | 96.7 |
| Msa1145160 | MtrunA17_Chr3g0127511 | 49.451 | 91 | 46 | 0 | 61 | 151 | 40 | 130 | 1.73e-23 | 95.5 |
| Msa1145160 | MtrunA17_Chr8g0346251 | 48.837 | 86 | 44 | 0 | 66 | 151 | 48 | 133 | 3.29e-23 | 94.7 |
| Msa1145160 | MtrunA17_Chr4g0055851 | 46.667 | 105 | 49 | 1 | 49 | 153 | 110 | 207 | 2.55e-20 | 87.4 |
| Msa1145160 | MtrunA17_Chr4g0054421 | 45.946 | 111 | 51 | 2 | 43 | 153 | 113 | 214 | 1.40e-19 | 85.5 |
| Msa1145160 | MtrunA17_Chr5g0403701 | 43.220 | 118 | 55 | 1 | 51 | 168 | 45 | 150 | 5.65e-19 | 82.4 |
| Msa1145160 | MtrunA17_Chr4g0071411 | 46.739 | 92 | 42 | 1 | 62 | 153 | 91 | 175 | 1.24e-18 | 81.6 |
| Msa1145160 | MtrunA17_Chr5g0403691 | 42.500 | 120 | 60 | 3 | 51 | 168 | 45 | 157 | 1.66e-17 | 79.0 |
| Msa1145160 | MtrunA17_Chr1g0175651 | 46.226 | 106 | 48 | 2 | 48 | 153 | 145 | 241 | 3.77e-17 | 79.0 |
| Msa1145160 | MtrunA17_Chr7g0258831 | 45.283 | 106 | 49 | 2 | 48 | 153 | 151 | 247 | 4.33e-17 | 79.0 |
| Msa1145160 | MtrunA17_Chr5g0399491 | 45.714 | 105 | 50 | 1 | 49 | 153 | 126 | 223 | 4.46e-17 | 79.0 |
| Msa1145160 | MtrunA17_Chr2g0308611 | 47.368 | 95 | 43 | 1 | 59 | 153 | 200 | 287 | 8.28e-17 | 78.6 |
| Msa1145160 | MtrunA17_Chr5g0400781 | 45.283 | 106 | 50 | 2 | 48 | 153 | 113 | 210 | 2.75e-16 | 76.3 |
| Msa1145160 | MtrunA17_Chr1g0151971 | 46.316 | 95 | 44 | 1 | 59 | 153 | 130 | 217 | 6.83e-16 | 75.5 |
| Msa1145160 | MtrunA17_Chr8g0335131 | 47.872 | 94 | 45 | 1 | 59 | 152 | 146 | 235 | 1.05e-15 | 75.1 |
| Msa1145160 | MtrunA17_Chr4g0044091 | 44.211 | 95 | 46 | 1 | 59 | 153 | 65 | 152 | 2.29e-14 | 69.7 |
| Msa1145160 | MtrunA17_Chr3g0135331 | 47.297 | 74 | 39 | 0 | 57 | 130 | 143 | 216 | 1.47e-13 | 68.9 |
| Msa1145160 | MtrunA17_Chr2g0299031 | 43.158 | 95 | 47 | 1 | 59 | 153 | 82 | 169 | 8.63e-13 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1145160 | AT5G65310.1 | 53.571 | 168 | 65 | 4 | 1 | 155 | 1 | 168 | 3.73e-49 | 164 |
| Msa1145160 | AT5G65310.2 | 59.441 | 143 | 47 | 2 | 24 | 155 | 8 | 150 | 1.94e-48 | 162 |
| Msa1145160 | AT4G40060.1 | 34.416 | 308 | 125 | 9 | 1 | 255 | 1 | 284 | 1.44e-43 | 149 |
| Msa1145160 | AT2G22430.1 | 49.057 | 159 | 75 | 2 | 1 | 155 | 2 | 158 | 2.21e-42 | 147 |
| Msa1145160 | AT1G69780.1 | 60.163 | 123 | 48 | 1 | 46 | 168 | 72 | 193 | 1.83e-39 | 139 |
| Msa1145160 | AT5G15150.1 | 58.594 | 128 | 49 | 3 | 42 | 166 | 95 | 221 | 1.21e-37 | 134 |
| Msa1145160 | AT1G26960.1 | 43.500 | 200 | 98 | 5 | 41 | 235 | 53 | 242 | 1.91e-36 | 130 |
| Msa1145160 | AT3G01220.1 | 50.000 | 146 | 66 | 3 | 44 | 187 | 70 | 210 | 4.00e-35 | 127 |
| Msa1145160 | AT3G01470.1 | 60.000 | 100 | 40 | 0 | 56 | 155 | 65 | 164 | 8.02e-33 | 120 |
| Msa1145160 | AT3G61890.1 | 39.860 | 143 | 81 | 2 | 62 | 202 | 33 | 172 | 2.02e-27 | 105 |
| Msa1145160 | AT2G46680.1 | 50.538 | 93 | 46 | 0 | 60 | 152 | 33 | 125 | 4.53e-26 | 102 |
| Msa1145160 | AT1G27045.1 | 53.535 | 99 | 46 | 0 | 57 | 155 | 66 | 164 | 6.74e-26 | 101 |
| Msa1145160 | AT1G27045.5 | 53.535 | 99 | 46 | 0 | 57 | 155 | 23 | 121 | 8.01e-26 | 100 |
| Msa1145160 | AT1G27045.3 | 53.535 | 99 | 46 | 0 | 57 | 155 | 23 | 121 | 8.01e-26 | 100 |
| Msa1145160 | AT1G27045.2 | 53.535 | 99 | 46 | 0 | 57 | 155 | 15 | 113 | 9.57e-26 | 100 |
| Msa1145160 | AT2G46680.2 | 48.958 | 96 | 48 | 1 | 60 | 154 | 33 | 128 | 8.95e-25 | 99.4 |
| Msa1145160 | AT1G27045.4 | 52.632 | 95 | 45 | 0 | 57 | 151 | 66 | 160 | 2.49e-24 | 98.2 |
| Msa1145160 | AT2G18550.1 | 38.323 | 167 | 80 | 4 | 59 | 217 | 61 | 212 | 1.55e-21 | 90.1 |
| Msa1145160 | AT5G03790.1 | 43.103 | 116 | 59 | 1 | 59 | 167 | 77 | 192 | 1.88e-21 | 90.1 |
| Msa1145160 | AT4G36740.2 | 46.903 | 113 | 56 | 1 | 52 | 160 | 49 | 161 | 1.09e-20 | 87.8 |
| Msa1145160 | AT4G36740.1 | 46.903 | 113 | 56 | 1 | 52 | 160 | 48 | 160 | 1.11e-20 | 87.4 |
| Msa1145160 | AT5G03790.2 | 52.439 | 82 | 39 | 0 | 59 | 140 | 77 | 158 | 1.44e-20 | 86.7 |
| Msa1145160 | AT5G66700.1 | 34.857 | 175 | 102 | 5 | 46 | 217 | 60 | 225 | 3.43e-20 | 86.7 |
| Msa1145160 | AT2G36610.1 | 45.545 | 101 | 47 | 1 | 58 | 150 | 70 | 170 | 9.56e-20 | 84.3 |
| Msa1145160 | AT5G53980.1 | 41.237 | 97 | 57 | 0 | 59 | 155 | 11 | 107 | 2.81e-18 | 79.7 |
| Msa1145160 | AT2G01430.1 | 36.879 | 141 | 81 | 2 | 45 | 184 | 125 | 258 | 3.46e-18 | 82.0 |
| Msa1145160 | AT5G06710.1 | 40.741 | 135 | 73 | 3 | 20 | 153 | 152 | 280 | 3.02e-17 | 80.1 |
| Msa1145160 | AT4G17460.1 | 41.270 | 126 | 63 | 3 | 32 | 153 | 104 | 222 | 5.88e-17 | 79.0 |
| Msa1145160 | AT5G47370.1 | 41.538 | 130 | 63 | 2 | 23 | 152 | 103 | 219 | 6.26e-17 | 78.6 |
| Msa1145160 | AT2G44910.1 | 46.316 | 95 | 44 | 1 | 59 | 153 | 163 | 250 | 4.83e-16 | 76.6 |
| Msa1145160 | AT4G37790.1 | 42.241 | 116 | 59 | 2 | 38 | 153 | 106 | 213 | 8.09e-16 | 75.5 |
| Msa1145160 | AT4G16780.1 | 44.660 | 103 | 49 | 2 | 51 | 153 | 122 | 216 | 2.03e-15 | 74.3 |
| Msa1145160 | AT3G60390.1 | 41.284 | 109 | 57 | 1 | 45 | 153 | 148 | 249 | 2.28e-15 | 74.7 |
| Msa1145160 | AT2G22800.1 | 41.176 | 119 | 68 | 2 | 51 | 169 | 106 | 222 | 9.38e-15 | 72.4 |
| Msa1145160 | AT1G70920.1 | 37.600 | 125 | 76 | 1 | 20 | 144 | 32 | 154 | 1.46e-12 | 65.5 |
| Msa1145160 | AT1G70920.2 | 37.600 | 125 | 76 | 1 | 20 | 144 | 2 | 124 | 1.49e-12 | 64.7 |
| Msa1145160 | AT2G01430.2 | 43.529 | 85 | 44 | 1 | 45 | 125 | 125 | 209 | 1.65e-12 | 65.1 |
| Msa1145160 | AT5G06710.4 | 39.560 | 91 | 54 | 1 | 20 | 110 | 152 | 241 | 1.17e-11 | 63.5 |
Find 58 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAAGTTCAATGATAAATT+TGG | 0.152909 | 7_4:+21736418 | Msa1145160:CDS |
| TCGTTCGTGCTCGACGATTT+TGG | 0.160811 | 7_4:-21736012 | None:intergenic |
| CTACAAGGGAAGATCTATTT+TGG | 0.180223 | 7_4:+21735596 | Msa1145160:five_prime_UTR |
| CTTTCTATACCTCTTGAAAT+TGG | 0.202435 | 7_4:-21736314 | None:intergenic |
| TTGTAGAACACTACTAATTT+AGG | 0.216370 | 7_4:-21735579 | None:intergenic |
| GTGAAGTTAGCTGAAGATTT+AGG | 0.236761 | 7_4:+21735959 | Msa1145160:CDS |
| AACCTTAAGAACATCAAAAT+TGG | 0.244715 | 7_4:-21736074 | None:intergenic |
| AACCTAGACAAGTTTCAATT+TGG | 0.262579 | 7_4:+21735987 | Msa1145160:CDS |
| ATAATCTCTTTCCAATTGTT+TGG | 0.328373 | 7_4:-21736038 | None:intergenic |
| TGTTACATAGGAATTATTAT+AGG | 0.331737 | 7_4:+21735410 | Msa1145160:five_prime_UTR |
| GATTCTCCTTTGTGTTTCAA+TGG | 0.332033 | 7_4:+21736389 | Msa1145160:CDS |
| TAATTCAAGTGGTGTAATTA+AGG | 0.336290 | 7_4:+21736352 | Msa1145160:CDS |
| TTTAGAAAAGAGCTTTGAAT+TGG | 0.355867 | 7_4:+21735910 | Msa1145160:CDS |
| GTTCAATAACTCGGAAACTA+TGG | 0.361291 | 7_4:+21735634 | Msa1145160:CDS |
| TATCTAATTGAAACTTTGTT+TGG | 0.364874 | 7_4:+21736595 | Msa1145160:three_prime_UTR |
| GCGTATGCAACTTGACTTGC+TGG | 0.368962 | 7_4:+21735365 | Msa1145160:five_prime_UTR |
| CATCTATATTATCCCAACTT+TGG | 0.396581 | 7_4:+21735548 | Msa1145160:five_prime_UTR |
| TCAGAATCACTTTATGAGAA+TGG | 0.408136 | 7_4:+21736481 | Msa1145160:CDS |
| ACCAAATTTATCATTGAACT+TGG | 0.428967 | 7_4:-21736419 | None:intergenic |
| AGTAATTGTGTGTGTGGTTG+AGG | 0.446780 | 7_4:+21735472 | Msa1145160:five_prime_UTR |
| TTCTATATATACCTTTGGAT+TGG | 0.453479 | 7_4:-21735676 | None:intergenic |
| TATACCTTTGGATTGGTACA+TGG | 0.467749 | 7_4:-21735669 | None:intergenic |
| TGTTATATGATTTGTTACAT+AGG | 0.468479 | 7_4:+21735398 | Msa1145160:five_prime_UTR |
| TTTGCTTGATCTTATGCTGT+TGG | 0.476451 | 7_4:-21735506 | None:intergenic |
| GCTTGATCTTATGCTGTTGG+TGG | 0.477450 | 7_4:-21735503 | None:intergenic |
| TCACTTGGTATTACAAAGTA+GGG | 0.484152 | 7_4:-21736562 | None:intergenic |
| ACGAACGAAAACCAAACAAT+TGG | 0.484787 | 7_4:+21736027 | Msa1145160:CDS |
| CTCACTTGGTATTACAAAGT+AGG | 0.486883 | 7_4:-21736563 | None:intergenic |
| TTAGGAAACAGAACCAAAGT+TGG | 0.488033 | 7_4:-21735561 | None:intergenic |
| AGAGGATAGGACAGGACATA+TGG | 0.489411 | 7_4:-21735334 | None:intergenic |
| TAGGAAACAGAACCAAAGTT+GGG | 0.490342 | 7_4:-21735560 | None:intergenic |
| AGATATCATTTATGCTCACT+TGG | 0.490661 | 7_4:-21736577 | None:intergenic |
| GTAACAAATCATATAACAAA+AGG | 0.508333 | 7_4:-21735393 | None:intergenic |
| GAATGAGACTCTTACTAGAA+AGG | 0.510168 | 7_4:+21736120 | Msa1145160:CDS |
| TATTATAGGAATCCACCCTA+TGG | 0.521162 | 7_4:+21735424 | Msa1145160:five_prime_UTR |
| CAAGAAGATAGCTATGAAGA+TGG | 0.532967 | 7_4:+21735836 | Msa1145160:CDS |
| TGAAGATGGTAGTTCAATGT+TGG | 0.535009 | 7_4:+21735850 | Msa1145160:CDS |
| TGCAAATGCAGAGGTGGATG+TGG | 0.541032 | 7_4:+21735751 | Msa1145160:intron |
| AACCAAATTGAAACTTGTCT+AGG | 0.545141 | 7_4:-21735989 | None:intergenic |
| ATTTCAAGAGGTATAGAAAG+AGG | 0.548836 | 7_4:+21736317 | Msa1145160:CDS |
| TAAATTAGTAGTGTTCTACA+AGG | 0.550838 | 7_4:+21735581 | Msa1145160:five_prime_UTR |
| GATCAGAGGAATGAGACAAA+AGG | 0.552396 | 7_4:+21735773 | Msa1145160:CDS |
| TTGGAGAAGAAAAGAAGACT+TGG | 0.569876 | 7_4:+21735869 | Msa1145160:CDS |
| CTTTCCATGTACCAATCCAA+AGG | 0.573223 | 7_4:+21735665 | Msa1145160:CDS |
| GTTCATTATTATGATTCAAG+AGG | 0.577370 | 7_4:+21736440 | Msa1145160:CDS |
| GTAGAATGTCCAATTTCAAG+AGG | 0.608484 | 7_4:+21736305 | Msa1145160:CDS |
| AATGAAGAGGTTCAATAACT+CGG | 0.609369 | 7_4:+21735625 | Msa1145160:exon |
| CAGAGGTGGATGTGGATCAG+AGG | 0.615698 | 7_4:+21735759 | Msa1145160:intron |
| AATAGTAGTAATTGTGTGTG+TGG | 0.626966 | 7_4:+21735466 | Msa1145160:five_prime_UTR |
| GAATCACTTTATGAGAATGG+AGG | 0.629666 | 7_4:+21736484 | Msa1145160:CDS |
| AGTTACACAGAGGATAGGAC+AGG | 0.636924 | 7_4:-21735342 | None:intergenic |
| TCAAGAGGTATAGAAAGAGG+AGG | 0.641487 | 7_4:+21736320 | Msa1145160:CDS |
| AAAGAACCATTGAAACACAA+AGG | 0.657955 | 7_4:-21736395 | None:intergenic |
| TACGCAGTTACACAGAGGAT+AGG | 0.660218 | 7_4:-21735347 | None:intergenic |
| CACTTGGTATTACAAAGTAG+GGG | 0.660432 | 7_4:-21736561 | None:intergenic |
| GGTTCAGAAAGTAATTCAAG+TGG | 0.665455 | 7_4:+21736341 | Msa1145160:CDS |
| AAATTAGTAGTGTTCTACAA+GGG | 0.702473 | 7_4:+21735582 | Msa1145160:five_prime_UTR |
| TTGCATACGCAGTTACACAG+AGG | 0.771433 | 7_4:-21735352 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACCTTTTTAATTTTATTTTG+TGG | + | chr7_4:21735708-21735727 | Msa1145160:intron | 15.0% |
| !! | ACCACAAAATAAAATTAAAA+AGG | - | chr7_4:21735712-21735731 | None:intergenic | 15.0% |
| !!! | ACCTTTTTAATTTTATTTTG+TGG | + | chr7_4:21735708-21735727 | Msa1145160:intron | 15.0% |
| !! | ACCACAAAATAAAATTAAAA+AGG | - | chr7_4:21735712-21735731 | None:intergenic | 15.0% |
| !! | GTAACAAATCATATAACAAA+AGG | - | chr7_4:21735396-21735415 | None:intergenic | 20.0% |
| !!! | TGTTATATGATTTGTTACAT+AGG | + | chr7_4:21735398-21735417 | Msa1145160:five_prime_UTR | 20.0% |
| !! | TGTTACATAGGAATTATTAT+AGG | + | chr7_4:21735410-21735429 | Msa1145160:five_prime_UTR | 20.0% |
| !!! | TATTCTAATGTTTTTCCATA+GGG | - | chr7_4:21735442-21735461 | None:intergenic | 20.0% |
| !!! | ATATTCTAATGTTTTTCCAT+AGG | - | chr7_4:21735443-21735462 | None:intergenic | 20.0% |
| !! | ATTACTTCTATATATACCTT+TGG | - | chr7_4:21735684-21735703 | None:intergenic | 20.0% |
| !! | TATCTAATTGAAACTTTGTT+TGG | + | chr7_4:21736595-21736614 | Msa1145160:three_prime_UTR | 20.0% |
| !! | GTAACAAATCATATAACAAA+AGG | - | chr7_4:21735396-21735415 | None:intergenic | 20.0% |
| !!! | TGTTATATGATTTGTTACAT+AGG | + | chr7_4:21735398-21735417 | Msa1145160:five_prime_UTR | 20.0% |
| !! | TGTTACATAGGAATTATTAT+AGG | + | chr7_4:21735410-21735429 | Msa1145160:five_prime_UTR | 20.0% |
| !!! | TATTCTAATGTTTTTCCATA+GGG | - | chr7_4:21735442-21735461 | None:intergenic | 20.0% |
| !!! | ATATTCTAATGTTTTTCCAT+AGG | - | chr7_4:21735443-21735462 | None:intergenic | 20.0% |
| !! | ATTACTTCTATATATACCTT+TGG | - | chr7_4:21735684-21735703 | None:intergenic | 20.0% |
| !! | TATCTAATTGAAACTTTGTT+TGG | + | chr7_4:21736595-21736614 | Msa1145160:three_prime_UTR | 20.0% |
| ! | TTGTAGAACACTACTAATTT+AGG | - | chr7_4:21735582-21735601 | None:intergenic | 25.0% |
| ! | TAAATTAGTAGTGTTCTACA+AGG | + | chr7_4:21735581-21735600 | Msa1145160:five_prime_UTR | 25.0% |
| ! | AAATTAGTAGTGTTCTACAA+GGG | + | chr7_4:21735582-21735601 | Msa1145160:five_prime_UTR | 25.0% |
| ! | TTCTATATATACCTTTGGAT+TGG | - | chr7_4:21735679-21735698 | None:intergenic | 25.0% |
| !!! | TTTAGAAAAGAGCTTTGAAT+TGG | + | chr7_4:21735910-21735929 | Msa1145160:CDS | 25.0% |
| ! | ATAATCTCTTTCCAATTGTT+TGG | - | chr7_4:21736041-21736060 | None:intergenic | 25.0% |
| ! | AACCTTAAGAACATCAAAAT+TGG | - | chr7_4:21736077-21736096 | None:intergenic | 25.0% |
| ! | TAATTCAAGTGGTGTAATTA+AGG | + | chr7_4:21736352-21736371 | Msa1145160:CDS | 25.0% |
| ! | ACCAAATTTATCATTGAACT+TGG | - | chr7_4:21736422-21736441 | None:intergenic | 25.0% |
| ! | GTTCATTATTATGATTCAAG+AGG | + | chr7_4:21736440-21736459 | Msa1145160:CDS | 25.0% |
| !! | CTTTGTTTGGTTACAAAAAT+AGG | + | chr7_4:21736608-21736627 | Msa1145160:three_prime_UTR | 25.0% |
| ! | TTGTAGAACACTACTAATTT+AGG | - | chr7_4:21735582-21735601 | None:intergenic | 25.0% |
| ! | TAAATTAGTAGTGTTCTACA+AGG | + | chr7_4:21735581-21735600 | Msa1145160:five_prime_UTR | 25.0% |
| ! | AAATTAGTAGTGTTCTACAA+GGG | + | chr7_4:21735582-21735601 | Msa1145160:five_prime_UTR | 25.0% |
| ! | TTCTATATATACCTTTGGAT+TGG | - | chr7_4:21735679-21735698 | None:intergenic | 25.0% |
| !!! | TTTAGAAAAGAGCTTTGAAT+TGG | + | chr7_4:21735910-21735929 | Msa1145160:CDS | 25.0% |
| ! | ATAATCTCTTTCCAATTGTT+TGG | - | chr7_4:21736041-21736060 | None:intergenic | 25.0% |
| ! | AACCTTAAGAACATCAAAAT+TGG | - | chr7_4:21736077-21736096 | None:intergenic | 25.0% |
| ! | TAATTCAAGTGGTGTAATTA+AGG | + | chr7_4:21736352-21736371 | Msa1145160:CDS | 25.0% |
| ! | ACCAAATTTATCATTGAACT+TGG | - | chr7_4:21736422-21736441 | None:intergenic | 25.0% |
| ! | GTTCATTATTATGATTCAAG+AGG | + | chr7_4:21736440-21736459 | Msa1145160:CDS | 25.0% |
| !! | CTTTGTTTGGTTACAAAAAT+AGG | + | chr7_4:21736608-21736627 | Msa1145160:three_prime_UTR | 25.0% |
| AATAGTAGTAATTGTGTGTG+TGG | + | chr7_4:21735466-21735485 | Msa1145160:five_prime_UTR | 30.0% | |
| CATCTATATTATCCCAACTT+TGG | + | chr7_4:21735548-21735567 | Msa1145160:five_prime_UTR | 30.0% | |
| !! | ATTTTGGTCACATAATGAAG+AGG | + | chr7_4:21735612-21735631 | Msa1145160:exon | 30.0% |
| AATGAAGAGGTTCAATAACT+CGG | + | chr7_4:21735625-21735644 | Msa1145160:exon | 30.0% | |
| AACCTAGACAAGTTTCAATT+TGG | + | chr7_4:21735987-21736006 | Msa1145160:CDS | 30.0% | |
| AACCAAATTGAAACTTGTCT+AGG | - | chr7_4:21735992-21736011 | None:intergenic | 30.0% | |
| !! | GTCCAATTTTGATGTTCTTA+AGG | + | chr7_4:21736072-21736091 | Msa1145160:CDS | 30.0% |
| CTTTCTATACCTCTTGAAAT+TGG | - | chr7_4:21736317-21736336 | None:intergenic | 30.0% | |
| ! | ATTTCAAGAGGTATAGAAAG+AGG | + | chr7_4:21736317-21736336 | Msa1145160:CDS | 30.0% |
| AAAGAACCATTGAAACACAA+AGG | - | chr7_4:21736398-21736417 | None:intergenic | 30.0% | |
| GCCAAGTTCAATGATAAATT+TGG | + | chr7_4:21736418-21736437 | Msa1145160:CDS | 30.0% | |
| TCAGAATCACTTTATGAGAA+TGG | + | chr7_4:21736481-21736500 | Msa1145160:CDS | 30.0% | |
| TCACTTGGTATTACAAAGTA+GGG | - | chr7_4:21736565-21736584 | None:intergenic | 30.0% | |
| AGATATCATTTATGCTCACT+TGG | - | chr7_4:21736580-21736599 | None:intergenic | 30.0% | |
| AATAGTAGTAATTGTGTGTG+TGG | + | chr7_4:21735466-21735485 | Msa1145160:five_prime_UTR | 30.0% | |
| CATCTATATTATCCCAACTT+TGG | + | chr7_4:21735548-21735567 | Msa1145160:five_prime_UTR | 30.0% | |
| !! | ATTTTGGTCACATAATGAAG+AGG | + | chr7_4:21735612-21735631 | Msa1145160:exon | 30.0% |
| AATGAAGAGGTTCAATAACT+CGG | + | chr7_4:21735625-21735644 | Msa1145160:exon | 30.0% | |
| AACCTAGACAAGTTTCAATT+TGG | + | chr7_4:21735987-21736006 | Msa1145160:CDS | 30.0% | |
| AACCAAATTGAAACTTGTCT+AGG | - | chr7_4:21735992-21736011 | None:intergenic | 30.0% | |
| !! | GTCCAATTTTGATGTTCTTA+AGG | + | chr7_4:21736072-21736091 | Msa1145160:CDS | 30.0% |
| CTTTCTATACCTCTTGAAAT+TGG | - | chr7_4:21736317-21736336 | None:intergenic | 30.0% | |
| ! | ATTTCAAGAGGTATAGAAAG+AGG | + | chr7_4:21736317-21736336 | Msa1145160:CDS | 30.0% |
| AAAGAACCATTGAAACACAA+AGG | - | chr7_4:21736398-21736417 | None:intergenic | 30.0% | |
| GCCAAGTTCAATGATAAATT+TGG | + | chr7_4:21736418-21736437 | Msa1145160:CDS | 30.0% | |
| TCAGAATCACTTTATGAGAA+TGG | + | chr7_4:21736481-21736500 | Msa1145160:CDS | 30.0% | |
| TCACTTGGTATTACAAAGTA+GGG | - | chr7_4:21736565-21736584 | None:intergenic | 30.0% | |
| AGATATCATTTATGCTCACT+TGG | - | chr7_4:21736580-21736599 | None:intergenic | 30.0% | |
| TATTATAGGAATCCACCCTA+TGG | + | chr7_4:21735424-21735443 | Msa1145160:five_prime_UTR | 35.0% | |
| ! | TCTAATGTTTTTCCATAGGG+TGG | - | chr7_4:21735439-21735458 | None:intergenic | 35.0% |
| TTTGCTTGATCTTATGCTGT+TGG | - | chr7_4:21735509-21735528 | None:intergenic | 35.0% | |
| TAGGAAACAGAACCAAAGTT+GGG | - | chr7_4:21735563-21735582 | None:intergenic | 35.0% | |
| TTAGGAAACAGAACCAAAGT+TGG | - | chr7_4:21735564-21735583 | None:intergenic | 35.0% | |
| ! | CTACAAGGGAAGATCTATTT+TGG | + | chr7_4:21735596-21735615 | Msa1145160:five_prime_UTR | 35.0% |
| GTTCAATAACTCGGAAACTA+TGG | + | chr7_4:21735634-21735653 | Msa1145160:CDS | 35.0% | |
| !! | TATACCTTTGGATTGGTACA+TGG | - | chr7_4:21735672-21735691 | None:intergenic | 35.0% |
| TTCATTCTTTGCAAATGCAG+AGG | + | chr7_4:21735742-21735761 | Msa1145160:intron | 35.0% | |
| CAAGAAGATAGCTATGAAGA+TGG | + | chr7_4:21735836-21735855 | Msa1145160:CDS | 35.0% | |
| TGAAGATGGTAGTTCAATGT+TGG | + | chr7_4:21735850-21735869 | Msa1145160:CDS | 35.0% | |
| TTGGAGAAGAAAAGAAGACT+TGG | + | chr7_4:21735869-21735888 | Msa1145160:CDS | 35.0% | |
| GTGAAGTTAGCTGAAGATTT+AGG | + | chr7_4:21735959-21735978 | Msa1145160:CDS | 35.0% | |
| ACGAACGAAAACCAAACAAT+TGG | + | chr7_4:21736027-21736046 | Msa1145160:CDS | 35.0% | |
| GAATGAGACTCTTACTAGAA+AGG | + | chr7_4:21736120-21736139 | Msa1145160:CDS | 35.0% | |
| GTAGAATGTCCAATTTCAAG+AGG | + | chr7_4:21736305-21736324 | Msa1145160:CDS | 35.0% | |
| GGTTCAGAAAGTAATTCAAG+TGG | + | chr7_4:21736341-21736360 | Msa1145160:CDS | 35.0% | |
| GATTCTCCTTTGTGTTTCAA+TGG | + | chr7_4:21736389-21736408 | Msa1145160:CDS | 35.0% | |
| GAATCACTTTATGAGAATGG+AGG | + | chr7_4:21736484-21736503 | Msa1145160:CDS | 35.0% | |
| CACTTGGTATTACAAAGTAG+GGG | - | chr7_4:21736564-21736583 | None:intergenic | 35.0% | |
| CTCACTTGGTATTACAAAGT+AGG | - | chr7_4:21736566-21736585 | None:intergenic | 35.0% | |
| TATTATAGGAATCCACCCTA+TGG | + | chr7_4:21735424-21735443 | Msa1145160:five_prime_UTR | 35.0% | |
| ! | TCTAATGTTTTTCCATAGGG+TGG | - | chr7_4:21735439-21735458 | None:intergenic | 35.0% |
| TTTGCTTGATCTTATGCTGT+TGG | - | chr7_4:21735509-21735528 | None:intergenic | 35.0% | |
| TAGGAAACAGAACCAAAGTT+GGG | - | chr7_4:21735563-21735582 | None:intergenic | 35.0% | |
| TTAGGAAACAGAACCAAAGT+TGG | - | chr7_4:21735564-21735583 | None:intergenic | 35.0% | |
| ! | CTACAAGGGAAGATCTATTT+TGG | + | chr7_4:21735596-21735615 | Msa1145160:five_prime_UTR | 35.0% |
| GTTCAATAACTCGGAAACTA+TGG | + | chr7_4:21735634-21735653 | Msa1145160:CDS | 35.0% | |
| !! | TATACCTTTGGATTGGTACA+TGG | - | chr7_4:21735672-21735691 | None:intergenic | 35.0% |
| TTCATTCTTTGCAAATGCAG+AGG | + | chr7_4:21735742-21735761 | Msa1145160:intron | 35.0% | |
| CAAGAAGATAGCTATGAAGA+TGG | + | chr7_4:21735836-21735855 | Msa1145160:CDS | 35.0% | |
| TGAAGATGGTAGTTCAATGT+TGG | + | chr7_4:21735850-21735869 | Msa1145160:CDS | 35.0% | |
| TTGGAGAAGAAAAGAAGACT+TGG | + | chr7_4:21735869-21735888 | Msa1145160:CDS | 35.0% | |
| GTGAAGTTAGCTGAAGATTT+AGG | + | chr7_4:21735959-21735978 | Msa1145160:CDS | 35.0% | |
| ACGAACGAAAACCAAACAAT+TGG | + | chr7_4:21736027-21736046 | Msa1145160:CDS | 35.0% | |
| GAATGAGACTCTTACTAGAA+AGG | + | chr7_4:21736120-21736139 | Msa1145160:CDS | 35.0% | |
| GTAGAATGTCCAATTTCAAG+AGG | + | chr7_4:21736305-21736324 | Msa1145160:CDS | 35.0% | |
| GGTTCAGAAAGTAATTCAAG+TGG | + | chr7_4:21736341-21736360 | Msa1145160:CDS | 35.0% | |
| GATTCTCCTTTGTGTTTCAA+TGG | + | chr7_4:21736389-21736408 | Msa1145160:CDS | 35.0% | |
| GAATCACTTTATGAGAATGG+AGG | + | chr7_4:21736484-21736503 | Msa1145160:CDS | 35.0% | |
| CACTTGGTATTACAAAGTAG+GGG | - | chr7_4:21736564-21736583 | None:intergenic | 35.0% | |
| CTCACTTGGTATTACAAAGT+AGG | - | chr7_4:21736566-21736585 | None:intergenic | 35.0% | |
| AGTAATTGTGTGTGTGGTTG+AGG | + | chr7_4:21735472-21735491 | Msa1145160:five_prime_UTR | 40.0% | |
| CTTTCCATGTACCAATCCAA+AGG | + | chr7_4:21735665-21735684 | Msa1145160:CDS | 40.0% | |
| ATTCTTTGCAAATGCAGAGG+TGG | + | chr7_4:21735745-21735764 | Msa1145160:intron | 40.0% | |
| GATCAGAGGAATGAGACAAA+AGG | + | chr7_4:21735773-21735792 | Msa1145160:CDS | 40.0% | |
| !! | GCTAACTTCACTTTTCTCTC+TGG | - | chr7_4:21735950-21735969 | None:intergenic | 40.0% |
| ! | TCAAGAGGTATAGAAAGAGG+AGG | + | chr7_4:21736320-21736339 | Msa1145160:CDS | 40.0% |
| AGTAATTGTGTGTGTGGTTG+AGG | + | chr7_4:21735472-21735491 | Msa1145160:five_prime_UTR | 40.0% | |
| CTTTCCATGTACCAATCCAA+AGG | + | chr7_4:21735665-21735684 | Msa1145160:CDS | 40.0% | |
| ATTCTTTGCAAATGCAGAGG+TGG | + | chr7_4:21735745-21735764 | Msa1145160:intron | 40.0% | |
| GATCAGAGGAATGAGACAAA+AGG | + | chr7_4:21735773-21735792 | Msa1145160:CDS | 40.0% | |
| !! | GCTAACTTCACTTTTCTCTC+TGG | - | chr7_4:21735950-21735969 | None:intergenic | 40.0% |
| ! | TCAAGAGGTATAGAAAGAGG+AGG | + | chr7_4:21736320-21736339 | Msa1145160:CDS | 40.0% |
| AGAGGATAGGACAGGACATA+TGG | - | chr7_4:21735337-21735356 | None:intergenic | 45.0% | |
| AGTTACACAGAGGATAGGAC+AGG | - | chr7_4:21735345-21735364 | None:intergenic | 45.0% | |
| TACGCAGTTACACAGAGGAT+AGG | - | chr7_4:21735350-21735369 | None:intergenic | 45.0% | |
| TTGCATACGCAGTTACACAG+AGG | - | chr7_4:21735355-21735374 | None:intergenic | 45.0% | |
| GCTTGATCTTATGCTGTTGG+TGG | - | chr7_4:21735506-21735525 | None:intergenic | 45.0% | |
| AGAGGATAGGACAGGACATA+TGG | - | chr7_4:21735337-21735356 | None:intergenic | 45.0% | |
| AGTTACACAGAGGATAGGAC+AGG | - | chr7_4:21735345-21735364 | None:intergenic | 45.0% | |
| TACGCAGTTACACAGAGGAT+AGG | - | chr7_4:21735350-21735369 | None:intergenic | 45.0% | |
| TTGCATACGCAGTTACACAG+AGG | - | chr7_4:21735355-21735374 | None:intergenic | 45.0% | |
| GCTTGATCTTATGCTGTTGG+TGG | - | chr7_4:21735506-21735525 | None:intergenic | 45.0% | |
| !! | GCGTATGCAACTTGACTTGC+TGG | + | chr7_4:21735365-21735384 | Msa1145160:five_prime_UTR | 50.0% |
| TGCAAATGCAGAGGTGGATG+TGG | + | chr7_4:21735751-21735770 | Msa1145160:intron | 50.0% | |
| ! | TCGTTCGTGCTCGACGATTT+TGG | - | chr7_4:21736015-21736034 | None:intergenic | 50.0% |
| !! | GCGTATGCAACTTGACTTGC+TGG | + | chr7_4:21735365-21735384 | Msa1145160:five_prime_UTR | 50.0% |
| TGCAAATGCAGAGGTGGATG+TGG | + | chr7_4:21735751-21735770 | Msa1145160:intron | 50.0% | |
| ! | TCGTTCGTGCTCGACGATTT+TGG | - | chr7_4:21736015-21736034 | None:intergenic | 50.0% |
| CAGAGGTGGATGTGGATCAG+AGG | + | chr7_4:21735759-21735778 | Msa1145160:intron | 55.0% | |
| CAGAGGTGGATGTGGATCAG+AGG | + | chr7_4:21735759-21735778 | Msa1145160:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_4 | gene | 21735234 | 21736679 | 21735234 | ID=Msa1145160;Name=Msa1145160 |
| chr7_4 | mRNA | 21735234 | 21736679 | 21735234 | ID=Msa1145160-mRNA-1;Parent=Msa1145160;Name=Msa1145160-mRNA-1;_AED=0.04;_eAED=0.04;_QI=392|1|1|1|1|1|3|105|255 |
| chr7_4 | exon | 21735234 | 21735686 | 21735234 | ID=Msa1145160-mRNA-1:exon:5260;Parent=Msa1145160-mRNA-1 |
| chr7_4 | exon | 21735762 | 21736141 | 21735762 | ID=Msa1145160-mRNA-1:exon:5261;Parent=Msa1145160-mRNA-1 |
| chr7_4 | exon | 21736248 | 21736679 | 21736248 | ID=Msa1145160-mRNA-1:exon:5262;Parent=Msa1145160-mRNA-1 |
| chr7_4 | five_prime_UTR | 21735234 | 21735625 | 21735234 | ID=Msa1145160-mRNA-1:five_prime_utr;Parent=Msa1145160-mRNA-1 |
| chr7_4 | CDS | 21735626 | 21735686 | 21735626 | ID=Msa1145160-mRNA-1:cds;Parent=Msa1145160-mRNA-1 |
| chr7_4 | CDS | 21735762 | 21736141 | 21735762 | ID=Msa1145160-mRNA-1:cds;Parent=Msa1145160-mRNA-1 |
| chr7_4 | CDS | 21736248 | 21736574 | 21736248 | ID=Msa1145160-mRNA-1:cds;Parent=Msa1145160-mRNA-1 |
| chr7_4 | three_prime_UTR | 21736575 | 21736679 | 21736575 | ID=Msa1145160-mRNA-1:three_prime_utr;Parent=Msa1145160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
