AlfalfaGEDB | Msa0467730

M. sativa cultivar zhongmu-4 / Msa0467730

KEGG: K12946
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005787 GO:0005789 GO:0006465 GO:0006508 GO:0006518 GO:0006605 GO:0006807 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016485 GO:0019538 GO:0030176 GO:0031224 GO:0031227 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0034641 GO:0042175 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0045047 GO:0045184 GO:0046907 GO:0051179 GO:0051234 GO:0051604 GO:0051641 GO:0051649 GO:0070727 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0072594 GO:0072599 GO:0098796 GO:0098827 GO:1901564 GO:1902494 GO:1905368
PFAM: PF06645.16

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467730	XP_003601799.1	98.925	93	1	0	1	93	1	93	1.92e-60	189

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467730	sp\|Q944J0\|SPCS1_ARATH	71.591	88	25	0	1	88	1	88	1.80e-40	131

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467730	G7JC07	98.925	93	1	0	1	93	1	93	9.17e-61	189

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0467730	Msa1341060	0.803920	2.768585e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467730	MtrunA17_Chr3g0122651	98.765	81	1	0	13	93	1	81	1.84e-54	163
Msa0467730	MtrunA17_Chr8g0377251	79.012	81	17	0	13	93	1	81	3.20e-44	137

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Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0467730	AT4G40042.1	79.747	79	16	1	79	1	79	1.31e-43	137
Msa0467730	AT2G22425.1	71.591	88	25	1	88	1	88	1.83e-41	131
Msa0467730	AT2G22425.2	71.591	88	25	1	88	1	88	1.83e-41	131

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Find 52 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACGTGAATTGGGACGAGA+AGG	0.592323	3_3:+69167596	None:intergenic
AAAGCATGAAATTTCAACTC+AGG	0.476370	3_3:+69166136	None:intergenic
AAGAAACCCATTAAGAAGTA+GGG	0.531311	3_3:-69166187	Msa0467730:exon
AAGCATGAAATTTCAACTCA+GGG	0.549473	3_3:+69166137	None:intergenic
AATCAAACCTAAAACGAAAA+TGG	0.290194	3_3:+69166011	None:intergenic
AATGTTGCTTGCATTTGCTG+TGG	0.601891	3_3:-69166404	Msa0467730:CDS
ACCGTCGTAAACAGGCATAA+AGG	0.531482	3_3:+69165972	None:intergenic
ACGATGATGCTCATATATGC+TGG	0.624836	3_3:-69166343	Msa0467730:CDS
ACGTCATCCTTCATCTGGTA+GGG	0.560439	3_3:-69167682	Msa0467730:five_prime_UTR
AGATATTTACCGTCGTAAAC+AGG	0.428991	3_3:+69165964	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GGAAGAAAAAAAACGTGAAT+TGG	+	chr3_3:69165939-69165958	None:intergenic	30.0%
AGAAAGAAAGATGTTACCTT+TGG	+	chr3_3:69165960-69165979	None:intergenic	30.0%
CACGCAACAAAAAATTTGAA+TGG	+	chr3_3:69166088-69166107	None:intergenic	30.0%
TGATTAGGAACTGATGAATT+TGG	-	chr3_3:69166176-69166195	Msa0467730:exon	30.0%
AATATACTCGTGTAAAGATG+AGG	+	chr3_3:69166454-69166473	None:intergenic	30.0%
ACCCAAAACATACAACAAAA+TGG	+	chr3_3:69166603-69166622	None:intergenic	30.0%
AAATGAGGATGATTTCTGAA+TGG	+	chr3_3:69166652-69166671	None:intergenic	30.0%
CTGTAGTACTTGCAATTATT+CGG	-	chr3_3:69166711-69166730	Msa0467730:intron	30.0%
AAGAATAGTATATAGCTCCT+TGG	-	chr3_3:69166837-69166856	Msa0467730:intron	30.0%
TTAGAGTTAGAAGTAGTAGT+AGG	-	chr3_3:69166967-69166986	Msa0467730:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	69165842	69167702	69165842	ID=Msa0467730;Name=Msa0467730
chr3_3	mRNA	69165842	69167702	69165842	ID=Msa0467730-mRNA-1;Parent=Msa0467730;Name=Msa0467730-mRNA-1;_AED=0.01;_eAED=0.01;_QI=121\|1\|1\|1\|0\|0.5\|2\|347\|93
chr3_3	exon	69165842	69166470	69165842	ID=Msa0467730-mRNA-1:exon:16259;Parent=Msa0467730-mRNA-1
chr3_3	exon	69167582	69167702	69167582	ID=Msa0467730-mRNA-1:exon:16258;Parent=Msa0467730-mRNA-1
chr3_3	five_prime_UTR	69167582	69167702	69167582	ID=Msa0467730-mRNA-1:five_prime_utr;Parent=Msa0467730-mRNA-1
chr3_3	CDS	69166189	69166470	69166189	ID=Msa0467730-mRNA-1:cds;Parent=Msa0467730-mRNA-1
chr3_3	three_prime_UTR	69165842	69166188	69165842	ID=Msa0467730-mRNA-1:three_prime_utr;Parent=Msa0467730-mRNA-1

Gene Sequence	>Msa0467730 ATGGATTGGCAAGGGCAAAACCTAGCAGAGAAGCTAATGCAGATAATGTTGCTTGCATTTGCTGTGGTTGCATTTGGAACGGGATATCTTACAGCTTCTTTCAAGACGATGATGCTCATATATGCTGGTGGTGTTGTTCTCACCACATTGGTGACTGTCCCAAATTGGCCCTTTTTCAACCGCCATCCTCTCAAGTGGTTGGATCCAAGTGAGGTAGAAAAGCATCCGAAGCCACAGCTATCTCCTATTGTGAATTCAAAGAAGAAACCCATTAAGAAGTAG
Protein sequence	>Msa0467730 MDWQGQNLAEKLMQIMLLAFAVVAFGTGYLTASFKTMMLIYAGGVVLTTLVTVPNWPFFNRHPLKWLDPSEVEKHPKPQLSPIVNSKKKPIKK*