Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468600 | XP_003601818.1 | 88.158 | 152 | 2 | 1 | 1 | 136 | 1 | 152 | 7.99e-92 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468600 | sp|Q9CAF9|IOJAM_ARATH | 45.395 | 152 | 54 | 4 | 1 | 126 | 1 | 149 | 1.97e-33 | 118 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468600 | G7JC26 | 88.158 | 152 | 2 | 1 | 1 | 136 | 1 | 152 | 3.82e-92 | 273 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0468600 | Msa0880140 | 0.800893 | 1.164155e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468600 | MtrunA17_Chr3g0122891 | 88.158 | 152 | 2 | 1 | 1 | 136 | 1 | 152 | 7.35e-96 | 273 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0468600 | AT1G67620.1 | 45.395 | 152 | 54 | 4 | 1 | 126 | 1 | 149 | 2.00e-34 | 118 |
Find 43 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAGAGCTTACTACAATT+TGG | 0.228395 | 3_3:+70284931 | Msa0468600:CDS |
| GAACGTCTGTCAGAATCTTT+TGG | 0.263991 | 3_3:-70283646 | None:intergenic |
| ACTACAATTTGGAGGGTCTT+TGG | 0.275991 | 3_3:+70284942 | Msa0468600:CDS |
| TTTACCTCAATAGGTTCATT+TGG | 0.341644 | 3_3:-70284980 | None:intergenic |
| AGGCACATATTTACCTCAAT+AGG | 0.386296 | 3_3:-70284989 | None:intergenic |
| CAACGATTGGACTGATTTCA+TGG | 0.389766 | 3_3:+70283706 | Msa0468600:CDS |
| CGCGTTCTCTTCTTCAACCA+TGG | 0.412305 | 3_3:+70283558 | Msa0468600:CDS |
| CTTCTTCAACCATGGAAGCT+AGG | 0.414669 | 3_3:+70283566 | Msa0468600:CDS |
| TCCTCTTCCCCTTGCACACT+AGG | 0.432528 | 3_3:-70283996 | None:intergenic |
| CTATCCACCACCTCCTTTGA+CGG | 0.435960 | 3_3:+70283599 | Msa0468600:CDS |
| TTCTTCAACCATGGAAGCTA+GGG | 0.450089 | 3_3:+70283567 | Msa0468600:CDS |
| CAATCGTTGTGCTTGGGAGC+TGG | 0.456058 | 3_3:-70283692 | None:intergenic |
| ATCAGTCCAATCGTTGTGCT+TGG | 0.467092 | 3_3:-70283699 | None:intergenic |
| TTGCTACTGGTCGATCCTCT+TGG | 0.492624 | 3_3:+70283732 | Msa0468600:CDS |
| ATCGAGGACGCCACCGTCAA+AGG | 0.498036 | 3_3:-70283612 | None:intergenic |
| GATTTCATGGTACTTGCTAC+TGG | 0.498390 | 3_3:+70283719 | Msa0468600:CDS |
| TCAGTCCAATCGTTGTGCTT+GGG | 0.500944 | 3_3:-70283698 | None:intergenic |
| ACAGTTCTGCGAGCTCGAGC+TGG | 0.507029 | 3_3:+70283527 | Msa0468600:CDS |
| GCCTAGTGTGCAAGGGGAAG+AGG | 0.509937 | 3_3:+70283995 | Msa0468600:CDS |
| CAGCTCCCAAGCACAACGAT+TGG | 0.518389 | 3_3:+70283693 | Msa0468600:CDS |
| GAGGGAAACCCTAGCTTCCA+TGG | 0.522794 | 3_3:-70283575 | None:intergenic |
| GACGCCACCGTCAAAGGAGG+TGG | 0.528639 | 3_3:-70283606 | None:intergenic |
| TAGAGCTTACTACAATTTGG+AGG | 0.534679 | 3_3:+70284934 | Msa0468600:CDS |
| ATTGCCAAATGAACCTATTG+AGG | 0.534854 | 3_3:+70284976 | Msa0468600:CDS |
| TTCATTTGGCAATGTCCCAC+GGG | 0.543983 | 3_3:-70284966 | None:intergenic |
| GTTCATTTGGCAATGTCCCA+CGG | 0.544380 | 3_3:-70284967 | None:intergenic |
| TTGGAGGGTCTTTGGACCCG+TGG | 0.549962 | 3_3:+70284950 | Msa0468600:CDS |
| GCCACCGTCAAAGGAGGTGG+TGG | 0.558170 | 3_3:-70283603 | None:intergenic |
| AAGGAGGTGGTGGATAGAGA+GGG | 0.575446 | 3_3:-70283593 | None:intergenic |
| TTTGGATCTCTTGCAGATCG+AGG | 0.575639 | 3_3:-70283628 | None:intergenic |
| ATGATGCTGCCTAGTGTGCA+AGG | 0.581460 | 3_3:+70283987 | Msa0468600:CDS |
| AAAGGAGGTGGTGGATAGAG+AGG | 0.582037 | 3_3:-70283594 | None:intergenic |
| AAGTGGATCGTCATTGACTC+CGG | 0.596480 | 3_3:+70284023 | Msa0468600:CDS |
| TCCACCACCTCCTTTGACGG+TGG | 0.597274 | 3_3:+70283602 | Msa0468600:CDS |
| TGGAGGGTCTTTGGACCCGT+GGG | 0.603661 | 3_3:+70284951 | Msa0468600:CDS |
| AGAGCTTACTACAATTTGGA+GGG | 0.611918 | 3_3:+70284935 | Msa0468600:CDS |
| AAGGGGAAGAGGATGGAAAG+TGG | 0.631163 | 3_3:+70284006 | Msa0468600:CDS |
| GAGGACGCCACCGTCAAAGG+AGG | 0.638799 | 3_3:-70283609 | None:intergenic |
| AGTGTGCAAGGGGAAGAGGA+TGG | 0.646996 | 3_3:+70283999 | Msa0468600:CDS |
| TGATGCTGCCTAGTGTGCAA+GGG | 0.658893 | 3_3:+70283988 | Msa0468600:CDS |
| GATATTCTTGACGTGCCAAG+AGG | 0.659964 | 3_3:-70283747 | None:intergenic |
| GATGCTGCCTAGTGTGCAAG+GGG | 0.678347 | 3_3:+70283989 | Msa0468600:CDS |
| TGGTTGAAGAAGAGAACGCG+AGG | 0.695140 | 3_3:-70283555 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATTAGTTATTTAATATT+TGG | + | chr3_3:70284833-70284852 | Msa0468600:intron | 10.0% |
| !! | GAAATTAGTTATTTAATATT+TGG | + | chr3_3:70284833-70284852 | Msa0468600:intron | 10.0% |
| !!! | TATGTATAATTGATTTTGAT+AGG | + | chr3_3:70283832-70283851 | Msa0468600:intron | 15.0% |
| !! | TTCAATTAGAAAATAAATTC+TGG | - | chr3_3:70283896-70283915 | None:intergenic | 15.0% |
| !! | AAAATAAAATCATGATATAC+CGG | - | chr3_3:70284045-70284064 | None:intergenic | 15.0% |
| !!! | TCTCTATATTATTTGATTTT+AGG | + | chr3_3:70284681-70284700 | Msa0468600:intron | 15.0% |
| !!! | TATGTATAATTGATTTTGAT+AGG | + | chr3_3:70283832-70283851 | Msa0468600:intron | 15.0% |
| !! | TTCAATTAGAAAATAAATTC+TGG | - | chr3_3:70283896-70283915 | None:intergenic | 15.0% |
| !! | AAAATAAAATCATGATATAC+CGG | - | chr3_3:70284045-70284064 | None:intergenic | 15.0% |
| !!! | TCTCTATATTATTTGATTTT+AGG | + | chr3_3:70284681-70284700 | Msa0468600:intron | 15.0% |
| !! | TTGAAATTCAACAAAATGAA+TGG | - | chr3_3:70284070-70284089 | None:intergenic | 20.0% |
| !! | CAGTTTATTATTCAATAAGA+GGG | - | chr3_3:70284501-70284520 | None:intergenic | 20.0% |
| !! | TCAGTTTATTATTCAATAAG+AGG | - | chr3_3:70284502-70284521 | None:intergenic | 20.0% |
| !! | GAATAATAAACTGAAATGTT+TGG | + | chr3_3:70284508-70284527 | Msa0468600:intron | 20.0% |
| !! | AACAAAAAAAAAATCAGTAC+TGG | - | chr3_3:70284877-70284896 | None:intergenic | 20.0% |
| !!! | TACTGATTTTTTTTTTGTTC+AGG | + | chr3_3:70284878-70284897 | Msa0468600:intron | 20.0% |
| !! | TTGAAATTCAACAAAATGAA+TGG | - | chr3_3:70284070-70284089 | None:intergenic | 20.0% |
| !! | CAGTTTATTATTCAATAAGA+GGG | - | chr3_3:70284501-70284520 | None:intergenic | 20.0% |
| !! | TCAGTTTATTATTCAATAAG+AGG | - | chr3_3:70284502-70284521 | None:intergenic | 20.0% |
| !! | GAATAATAAACTGAAATGTT+TGG | + | chr3_3:70284508-70284527 | Msa0468600:intron | 20.0% |
| !! | AACAAAAAAAAAATCAGTAC+TGG | - | chr3_3:70284877-70284896 | None:intergenic | 20.0% |
| !!! | TACTGATTTTTTTTTTGTTC+AGG | + | chr3_3:70284878-70284897 | Msa0468600:intron | 20.0% |
| ! | CAATTATACATAGTGTGATA+AGG | - | chr3_3:70283824-70283843 | None:intergenic | 25.0% |
| !!! | AATAAATTCTGGAATCATGT+TGG | - | chr3_3:70283885-70283904 | None:intergenic | 25.0% |
| !!! | TTTATTATTTTTGTGTGACC+AGG | + | chr3_3:70283935-70283954 | Msa0468600:intron | 25.0% |
| ! | TAATGGCTAAGAAATTAGTT+AGG | - | chr3_3:70284288-70284307 | None:intergenic | 25.0% |
| ! | ATTAAGGTCAAAAATAGGTT+TGG | - | chr3_3:70284431-70284450 | None:intergenic | 25.0% |
| ! | TTGAGATTAAGGTCAAAAAT+AGG | - | chr3_3:70284436-70284455 | None:intergenic | 25.0% |
| ! | GCAATATAACAATCTTATCA+CGG | + | chr3_3:70284588-70284607 | Msa0468600:intron | 25.0% |
| ! | CAATATAACAATCTTATCAC+GGG | + | chr3_3:70284589-70284608 | Msa0468600:intron | 25.0% |
| !! | AAAAAATCAGTACTGGAAAA+AGG | - | chr3_3:70284870-70284889 | None:intergenic | 25.0% |
| ! | CAATTATACATAGTGTGATA+AGG | - | chr3_3:70283824-70283843 | None:intergenic | 25.0% |
| !!! | AATAAATTCTGGAATCATGT+TGG | - | chr3_3:70283885-70283904 | None:intergenic | 25.0% |
| !!! | TTTATTATTTTTGTGTGACC+AGG | + | chr3_3:70283935-70283954 | Msa0468600:intron | 25.0% |
| ! | TAATGGCTAAGAAATTAGTT+AGG | - | chr3_3:70284288-70284307 | None:intergenic | 25.0% |
| ! | ATTAAGGTCAAAAATAGGTT+TGG | - | chr3_3:70284431-70284450 | None:intergenic | 25.0% |
| ! | TTGAGATTAAGGTCAAAAAT+AGG | - | chr3_3:70284436-70284455 | None:intergenic | 25.0% |
| ! | GCAATATAACAATCTTATCA+CGG | + | chr3_3:70284588-70284607 | Msa0468600:intron | 25.0% |
| ! | CAATATAACAATCTTATCAC+GGG | + | chr3_3:70284589-70284608 | Msa0468600:intron | 25.0% |
| !! | AAAAAATCAGTACTGGAAAA+AGG | - | chr3_3:70284870-70284889 | None:intergenic | 25.0% |
| ATAAGAAGAAAAAGCAACGA+AGG | - | chr3_3:70283801-70283820 | None:intergenic | 30.0% | |
| CAAAACTGTAGTTACCATAA+TGG | + | chr3_3:70284127-70284146 | Msa0468600:intron | 30.0% | |
| ATACACATTACAGACCATTA+TGG | - | chr3_3:70284144-70284163 | None:intergenic | 30.0% | |
| ! | TCATCCTTAATTAGCTTCTA+AGG | + | chr3_3:70284165-70284184 | Msa0468600:intron | 30.0% |
| !! | TTAATTAGCTTCTAAGGTGA+CGG | + | chr3_3:70284171-70284190 | Msa0468600:intron | 30.0% |
| ATGCACTACTAACTAACTAA+TGG | - | chr3_3:70284305-70284324 | None:intergenic | 30.0% | |
| TATGTAGCTACACATTAGTT+AGG | + | chr3_3:70284328-70284347 | Msa0468600:intron | 30.0% | |
| !! | AAATGTCCTGCACTATTTTT+GGG | + | chr3_3:70284457-70284476 | Msa0468600:intron | 30.0% |
| TTTGGATTCTACAACTACTT+TGG | + | chr3_3:70284526-70284545 | Msa0468600:intron | 30.0% | |
| CTAAACTTTCTAACAAACTC+TGG | + | chr3_3:70284747-70284766 | Msa0468600:intron | 30.0% | |
| ATAAGAAGAAAAAGCAACGA+AGG | - | chr3_3:70283801-70283820 | None:intergenic | 30.0% | |
| CAAAACTGTAGTTACCATAA+TGG | + | chr3_3:70284127-70284146 | Msa0468600:intron | 30.0% | |
| ATACACATTACAGACCATTA+TGG | - | chr3_3:70284144-70284163 | None:intergenic | 30.0% | |
| ! | TCATCCTTAATTAGCTTCTA+AGG | + | chr3_3:70284165-70284184 | Msa0468600:intron | 30.0% |
| !! | TTAATTAGCTTCTAAGGTGA+CGG | + | chr3_3:70284171-70284190 | Msa0468600:intron | 30.0% |
| ATGCACTACTAACTAACTAA+TGG | - | chr3_3:70284305-70284324 | None:intergenic | 30.0% | |
| TATGTAGCTACACATTAGTT+AGG | + | chr3_3:70284328-70284347 | Msa0468600:intron | 30.0% | |
| !! | AAATGTCCTGCACTATTTTT+GGG | + | chr3_3:70284457-70284476 | Msa0468600:intron | 30.0% |
| TTTGGATTCTACAACTACTT+TGG | + | chr3_3:70284526-70284545 | Msa0468600:intron | 30.0% | |
| CTAAACTTTCTAACAAACTC+TGG | + | chr3_3:70284747-70284766 | Msa0468600:intron | 30.0% | |
| GTTCTACTGTTCACATTAAG+TGG | - | chr3_3:70284097-70284116 | None:intergenic | 35.0% | |
| GTCACCTTAGAAGCTAATTA+AGG | - | chr3_3:70284172-70284191 | None:intergenic | 35.0% | |
| TCTGCACTATGGTTTATTGT+TGG | - | chr3_3:70284221-70284240 | None:intergenic | 35.0% | |
| TATAGAAAAGCAGCATCACT+CGG | - | chr3_3:70284264-70284283 | None:intergenic | 35.0% | |
| ! | CAGGACATTTGTTGAGATTA+AGG | - | chr3_3:70284447-70284466 | None:intergenic | 35.0% |
| ! | CAAATGTCCTGCACTATTTT+TGG | + | chr3_3:70284456-70284475 | Msa0468600:intron | 35.0% |
| GAAAGGAGTGAACTTGTAAA+TGG | - | chr3_3:70284615-70284634 | None:intergenic | 35.0% | |
| TTGACAAGACATCAAGGAAA+AGG | + | chr3_3:70284657-70284676 | Msa0468600:intron | 35.0% | |
| GCAAATAATGACAAGGAAAG+AGG | - | chr3_3:70284716-70284735 | None:intergenic | 35.0% | |
| CACTCTAGCAAATAATGACA+AGG | - | chr3_3:70284723-70284742 | None:intergenic | 35.0% | |
| TGCTAGAGCTTACTACAATT+TGG | + | chr3_3:70284931-70284950 | Msa0468600:CDS | 35.0% | |
| TAGAGCTTACTACAATTTGG+AGG | + | chr3_3:70284934-70284953 | Msa0468600:CDS | 35.0% | |
| AGAGCTTACTACAATTTGGA+GGG | + | chr3_3:70284935-70284954 | Msa0468600:CDS | 35.0% | |
| GTTCTACTGTTCACATTAAG+TGG | - | chr3_3:70284097-70284116 | None:intergenic | 35.0% | |
| GTCACCTTAGAAGCTAATTA+AGG | - | chr3_3:70284172-70284191 | None:intergenic | 35.0% | |
| TCTGCACTATGGTTTATTGT+TGG | - | chr3_3:70284221-70284240 | None:intergenic | 35.0% | |
| TATAGAAAAGCAGCATCACT+CGG | - | chr3_3:70284264-70284283 | None:intergenic | 35.0% | |
| ! | CAGGACATTTGTTGAGATTA+AGG | - | chr3_3:70284447-70284466 | None:intergenic | 35.0% |
| ! | CAAATGTCCTGCACTATTTT+TGG | + | chr3_3:70284456-70284475 | Msa0468600:intron | 35.0% |
| GAAAGGAGTGAACTTGTAAA+TGG | - | chr3_3:70284615-70284634 | None:intergenic | 35.0% | |
| TTGACAAGACATCAAGGAAA+AGG | + | chr3_3:70284657-70284676 | Msa0468600:intron | 35.0% | |
| GCAAATAATGACAAGGAAAG+AGG | - | chr3_3:70284716-70284735 | None:intergenic | 35.0% | |
| CACTCTAGCAAATAATGACA+AGG | - | chr3_3:70284723-70284742 | None:intergenic | 35.0% | |
| TGCTAGAGCTTACTACAATT+TGG | + | chr3_3:70284931-70284950 | Msa0468600:CDS | 35.0% | |
| TAGAGCTTACTACAATTTGG+AGG | + | chr3_3:70284934-70284953 | Msa0468600:CDS | 35.0% | |
| AGAGCTTACTACAATTTGGA+GGG | + | chr3_3:70284935-70284954 | Msa0468600:CDS | 35.0% | |
| TTCTTCAACCATGGAAGCTA+GGG | + | chr3_3:70283567-70283586 | Msa0468600:CDS | 40.0% | |
| ! | GAACGTCTGTCAGAATCTTT+TGG | - | chr3_3:70283649-70283668 | None:intergenic | 40.0% |
| ! | CAACGATTGGACTGATTTCA+TGG | + | chr3_3:70283706-70283725 | Msa0468600:CDS | 40.0% |
| ! | GATTTCATGGTACTTGCTAC+TGG | + | chr3_3:70283719-70283738 | Msa0468600:CDS | 40.0% |
| GGAACATGCCTGGTAAATAA+GGG | - | chr3_3:70283780-70283799 | None:intergenic | 40.0% | |
| AGGAACATGCCTGGTAAATA+AGG | - | chr3_3:70283781-70283800 | None:intergenic | 40.0% | |
| ATGTGAACAGTAGAACCCTA+TGG | + | chr3_3:70284101-70284120 | Msa0468600:intron | 40.0% | |
| ! | ACTACAGTTTTGCAGCCATA+GGG | - | chr3_3:70284119-70284138 | None:intergenic | 40.0% |
| ! | AACTACAGTTTTGCAGCCAT+AGG | - | chr3_3:70284120-70284139 | None:intergenic | 40.0% |
| GTGCATAAGTATCTGCACTA+TGG | - | chr3_3:70284232-70284251 | None:intergenic | 40.0% | |
| TGCAGATACTTATGCACCTT+AGG | + | chr3_3:70284235-70284254 | Msa0468600:intron | 40.0% | |
| GCAGATACTTATGCACCTTA+GGG | + | chr3_3:70284236-70284255 | Msa0468600:intron | 40.0% | |
| CAGATACTTATGCACCTTAG+GGG | + | chr3_3:70284237-70284256 | Msa0468600:intron | 40.0% | |
| TAAGCACATTCGACATGGTT+AGG | + | chr3_3:70284387-70284406 | Msa0468600:intron | 40.0% | |
| ATGGTTAGGCCATGGAATTA+GGG | + | chr3_3:70284401-70284420 | Msa0468600:intron | 40.0% | |
| TTTGGAAACCCCTAATTCCA+TGG | - | chr3_3:70284413-70284432 | None:intergenic | 40.0% | |
| TACACACCCAAAAATAGTGC+AGG | - | chr3_3:70284466-70284485 | None:intergenic | 40.0% | |
| TTGGGTGTGTATTGTGTTCA+AGG | + | chr3_3:70284475-70284494 | Msa0468600:intron | 40.0% | |
| ! | ATCAGTACTGGAAAAAGGCA+TGG | - | chr3_3:70284865-70284884 | None:intergenic | 40.0% |
| ACTACAATTTGGAGGGTCTT+TGG | + | chr3_3:70284942-70284961 | Msa0468600:CDS | 40.0% | |
| TTCTTCAACCATGGAAGCTA+GGG | + | chr3_3:70283567-70283586 | Msa0468600:CDS | 40.0% | |
| ! | GAACGTCTGTCAGAATCTTT+TGG | - | chr3_3:70283649-70283668 | None:intergenic | 40.0% |
| ! | CAACGATTGGACTGATTTCA+TGG | + | chr3_3:70283706-70283725 | Msa0468600:CDS | 40.0% |
| ! | GATTTCATGGTACTTGCTAC+TGG | + | chr3_3:70283719-70283738 | Msa0468600:CDS | 40.0% |
| GGAACATGCCTGGTAAATAA+GGG | - | chr3_3:70283780-70283799 | None:intergenic | 40.0% | |
| AGGAACATGCCTGGTAAATA+AGG | - | chr3_3:70283781-70283800 | None:intergenic | 40.0% | |
| ATGTGAACAGTAGAACCCTA+TGG | + | chr3_3:70284101-70284120 | Msa0468600:intron | 40.0% | |
| ! | ACTACAGTTTTGCAGCCATA+GGG | - | chr3_3:70284119-70284138 | None:intergenic | 40.0% |
| ! | AACTACAGTTTTGCAGCCAT+AGG | - | chr3_3:70284120-70284139 | None:intergenic | 40.0% |
| GTGCATAAGTATCTGCACTA+TGG | - | chr3_3:70284232-70284251 | None:intergenic | 40.0% | |
| TGCAGATACTTATGCACCTT+AGG | + | chr3_3:70284235-70284254 | Msa0468600:intron | 40.0% | |
| GCAGATACTTATGCACCTTA+GGG | + | chr3_3:70284236-70284255 | Msa0468600:intron | 40.0% | |
| CAGATACTTATGCACCTTAG+GGG | + | chr3_3:70284237-70284256 | Msa0468600:intron | 40.0% | |
| TAAGCACATTCGACATGGTT+AGG | + | chr3_3:70284387-70284406 | Msa0468600:intron | 40.0% | |
| ATGGTTAGGCCATGGAATTA+GGG | + | chr3_3:70284401-70284420 | Msa0468600:intron | 40.0% | |
| TTTGGAAACCCCTAATTCCA+TGG | - | chr3_3:70284413-70284432 | None:intergenic | 40.0% | |
| TACACACCCAAAAATAGTGC+AGG | - | chr3_3:70284466-70284485 | None:intergenic | 40.0% | |
| TTGGGTGTGTATTGTGTTCA+AGG | + | chr3_3:70284475-70284494 | Msa0468600:intron | 40.0% | |
| ! | ATCAGTACTGGAAAAAGGCA+TGG | - | chr3_3:70284865-70284884 | None:intergenic | 40.0% |
| ACTACAATTTGGAGGGTCTT+TGG | + | chr3_3:70284942-70284961 | Msa0468600:CDS | 40.0% | |
| CTTCTTCAACCATGGAAGCT+AGG | + | chr3_3:70283566-70283585 | Msa0468600:CDS | 45.0% | |
| TTTGGATCTCTTGCAGATCG+AGG | - | chr3_3:70283631-70283650 | None:intergenic | 45.0% | |
| TCAGTCCAATCGTTGTGCTT+GGG | - | chr3_3:70283701-70283720 | None:intergenic | 45.0% | |
| ATCAGTCCAATCGTTGTGCT+TGG | - | chr3_3:70283702-70283721 | None:intergenic | 45.0% | |
| GATATTCTTGACGTGCCAAG+AGG | - | chr3_3:70283750-70283769 | None:intergenic | 45.0% | |
| !! | CTATCTGCTTTTGCTTAGCC+TGG | - | chr3_3:70283956-70283975 | None:intergenic | 45.0% |
| CAGGCTAAGCAAAAGCAGAT+AGG | + | chr3_3:70283954-70283973 | Msa0468600:intron | 45.0% | |
| !! | AAGTGGATCGTCATTGACTC+CGG | + | chr3_3:70284023-70284042 | Msa0468600:CDS | 45.0% |
| CGAATGTGCTTAAACGCAGA+AGG | - | chr3_3:70284379-70284398 | None:intergenic | 45.0% | |
| GCGTTTAAGCACATTCGACA+TGG | + | chr3_3:70284382-70284401 | Msa0468600:intron | 45.0% | |
| CATGGTTAGGCCATGGAATT+AGG | + | chr3_3:70284400-70284419 | Msa0468600:intron | 45.0% | |
| TGGTTAGGCCATGGAATTAG+GGG | + | chr3_3:70284402-70284421 | Msa0468600:intron | 45.0% | |
| ! | TGGCATTGTTGCTTGATCCT+TGG | + | chr3_3:70284546-70284565 | Msa0468600:intron | 45.0% |
| GTTGCTTGATCCTTGGTATC+TGG | + | chr3_3:70284553-70284572 | Msa0468600:intron | 45.0% | |
| TTGATCCTTGGTATCTGGTG+TGG | + | chr3_3:70284558-70284577 | Msa0468600:intron | 45.0% | |
| TGATCCTTGGTATCTGGTGT+GGG | + | chr3_3:70284559-70284578 | Msa0468600:intron | 45.0% | |
| ! | AGGATGCTCTGAGCAATGAA+AGG | - | chr3_3:70284632-70284651 | None:intergenic | 45.0% |
| TTGATGTCTTGTCAAGCCAC+AGG | - | chr3_3:70284652-70284671 | None:intergenic | 45.0% | |
| TGTGGCTTGACAAGACATCA+AGG | + | chr3_3:70284651-70284670 | Msa0468600:intron | 45.0% | |
| TTCATTTGGCAATGTCCCAC+GGG | - | chr3_3:70284969-70284988 | None:intergenic | 45.0% | |
| GTTCATTTGGCAATGTCCCA+CGG | - | chr3_3:70284970-70284989 | None:intergenic | 45.0% | |
| CTTCTTCAACCATGGAAGCT+AGG | + | chr3_3:70283566-70283585 | Msa0468600:CDS | 45.0% | |
| TTTGGATCTCTTGCAGATCG+AGG | - | chr3_3:70283631-70283650 | None:intergenic | 45.0% | |
| TCAGTCCAATCGTTGTGCTT+GGG | - | chr3_3:70283701-70283720 | None:intergenic | 45.0% | |
| ATCAGTCCAATCGTTGTGCT+TGG | - | chr3_3:70283702-70283721 | None:intergenic | 45.0% | |
| GATATTCTTGACGTGCCAAG+AGG | - | chr3_3:70283750-70283769 | None:intergenic | 45.0% | |
| !! | CTATCTGCTTTTGCTTAGCC+TGG | - | chr3_3:70283956-70283975 | None:intergenic | 45.0% |
| CAGGCTAAGCAAAAGCAGAT+AGG | + | chr3_3:70283954-70283973 | Msa0468600:intron | 45.0% | |
| !! | AAGTGGATCGTCATTGACTC+CGG | + | chr3_3:70284023-70284042 | Msa0468600:CDS | 45.0% |
| CGAATGTGCTTAAACGCAGA+AGG | - | chr3_3:70284379-70284398 | None:intergenic | 45.0% | |
| GCGTTTAAGCACATTCGACA+TGG | + | chr3_3:70284382-70284401 | Msa0468600:intron | 45.0% | |
| CATGGTTAGGCCATGGAATT+AGG | + | chr3_3:70284400-70284419 | Msa0468600:intron | 45.0% | |
| TGGTTAGGCCATGGAATTAG+GGG | + | chr3_3:70284402-70284421 | Msa0468600:intron | 45.0% | |
| ! | TGGCATTGTTGCTTGATCCT+TGG | + | chr3_3:70284546-70284565 | Msa0468600:intron | 45.0% |
| GTTGCTTGATCCTTGGTATC+TGG | + | chr3_3:70284553-70284572 | Msa0468600:intron | 45.0% | |
| TTGATCCTTGGTATCTGGTG+TGG | + | chr3_3:70284558-70284577 | Msa0468600:intron | 45.0% | |
| TGATCCTTGGTATCTGGTGT+GGG | + | chr3_3:70284559-70284578 | Msa0468600:intron | 45.0% | |
| ! | AGGATGCTCTGAGCAATGAA+AGG | - | chr3_3:70284632-70284651 | None:intergenic | 45.0% |
| TTGATGTCTTGTCAAGCCAC+AGG | - | chr3_3:70284652-70284671 | None:intergenic | 45.0% | |
| TGTGGCTTGACAAGACATCA+AGG | + | chr3_3:70284651-70284670 | Msa0468600:intron | 45.0% | |
| TTCATTTGGCAATGTCCCAC+GGG | - | chr3_3:70284969-70284988 | None:intergenic | 45.0% | |
| GTTCATTTGGCAATGTCCCA+CGG | - | chr3_3:70284970-70284989 | None:intergenic | 45.0% | |
| TGGTTGAAGAAGAGAACGCG+AGG | - | chr3_3:70283558-70283577 | None:intergenic | 50.0% | |
| CGCGTTCTCTTCTTCAACCA+TGG | + | chr3_3:70283558-70283577 | Msa0468600:CDS | 50.0% | |
| !! | AAGGAGGTGGTGGATAGAGA+GGG | - | chr3_3:70283596-70283615 | None:intergenic | 50.0% |
| !! | AAAGGAGGTGGTGGATAGAG+AGG | - | chr3_3:70283597-70283616 | None:intergenic | 50.0% |
| CTATCCACCACCTCCTTTGA+CGG | + | chr3_3:70283599-70283618 | Msa0468600:CDS | 50.0% | |
| TTGCTACTGGTCGATCCTCT+TGG | + | chr3_3:70283732-70283751 | Msa0468600:CDS | 50.0% | |
| ! | CGCTCAAGCCCTTATTTACC+AGG | + | chr3_3:70283769-70283788 | Msa0468600:intron | 50.0% |
| AAGCAACGAAGGAACATGCC+TGG | - | chr3_3:70283790-70283809 | None:intergenic | 50.0% | |
| ATGATGCTGCCTAGTGTGCA+AGG | + | chr3_3:70283987-70284006 | Msa0468600:CDS | 50.0% | |
| TGATGCTGCCTAGTGTGCAA+GGG | + | chr3_3:70283988-70284007 | Msa0468600:CDS | 50.0% | |
| AAGGGGAAGAGGATGGAAAG+TGG | + | chr3_3:70284006-70284025 | Msa0468600:CDS | 50.0% | |
| CATTCGACATGGTTAGGCCA+TGG | + | chr3_3:70284393-70284412 | Msa0468600:intron | 50.0% | |
| CATTCCCACACCAGATACCA+AGG | - | chr3_3:70284566-70284585 | None:intergenic | 50.0% | |
| ! | TCATTGCTCAGAGCATCCTG+TGG | + | chr3_3:70284633-70284652 | Msa0468600:intron | 50.0% |
| TGGTTGAAGAAGAGAACGCG+AGG | - | chr3_3:70283558-70283577 | None:intergenic | 50.0% | |
| CGCGTTCTCTTCTTCAACCA+TGG | + | chr3_3:70283558-70283577 | Msa0468600:CDS | 50.0% | |
| !! | AAGGAGGTGGTGGATAGAGA+GGG | - | chr3_3:70283596-70283615 | None:intergenic | 50.0% |
| !! | AAAGGAGGTGGTGGATAGAG+AGG | - | chr3_3:70283597-70283616 | None:intergenic | 50.0% |
| CTATCCACCACCTCCTTTGA+CGG | + | chr3_3:70283599-70283618 | Msa0468600:CDS | 50.0% | |
| TTGCTACTGGTCGATCCTCT+TGG | + | chr3_3:70283732-70283751 | Msa0468600:CDS | 50.0% | |
| ! | CGCTCAAGCCCTTATTTACC+AGG | + | chr3_3:70283769-70283788 | Msa0468600:intron | 50.0% |
| AAGCAACGAAGGAACATGCC+TGG | - | chr3_3:70283790-70283809 | None:intergenic | 50.0% | |
| ATGATGCTGCCTAGTGTGCA+AGG | + | chr3_3:70283987-70284006 | Msa0468600:CDS | 50.0% | |
| TGATGCTGCCTAGTGTGCAA+GGG | + | chr3_3:70283988-70284007 | Msa0468600:CDS | 50.0% | |
| AAGGGGAAGAGGATGGAAAG+TGG | + | chr3_3:70284006-70284025 | Msa0468600:CDS | 50.0% | |
| CATTCGACATGGTTAGGCCA+TGG | + | chr3_3:70284393-70284412 | Msa0468600:intron | 50.0% | |
| CATTCCCACACCAGATACCA+AGG | - | chr3_3:70284566-70284585 | None:intergenic | 50.0% | |
| ! | TCATTGCTCAGAGCATCCTG+TGG | + | chr3_3:70284633-70284652 | Msa0468600:intron | 50.0% |
| GAGGGAAACCCTAGCTTCCA+TGG | - | chr3_3:70283578-70283597 | None:intergenic | 55.0% | |
| CAATCGTTGTGCTTGGGAGC+TGG | - | chr3_3:70283695-70283714 | None:intergenic | 55.0% | |
| CAGCTCCCAAGCACAACGAT+TGG | + | chr3_3:70283693-70283712 | Msa0468600:CDS | 55.0% | |
| GATGCTGCCTAGTGTGCAAG+GGG | + | chr3_3:70283989-70284008 | Msa0468600:CDS | 55.0% | |
| TCCTCTTCCCCTTGCACACT+AGG | - | chr3_3:70283999-70284018 | None:intergenic | 55.0% | |
| AGTGTGCAAGGGGAAGAGGA+TGG | + | chr3_3:70283999-70284018 | Msa0468600:CDS | 55.0% | |
| GAGGGAAACCCTAGCTTCCA+TGG | - | chr3_3:70283578-70283597 | None:intergenic | 55.0% | |
| CAATCGTTGTGCTTGGGAGC+TGG | - | chr3_3:70283695-70283714 | None:intergenic | 55.0% | |
| CAGCTCCCAAGCACAACGAT+TGG | + | chr3_3:70283693-70283712 | Msa0468600:CDS | 55.0% | |
| GATGCTGCCTAGTGTGCAAG+GGG | + | chr3_3:70283989-70284008 | Msa0468600:CDS | 55.0% | |
| TCCTCTTCCCCTTGCACACT+AGG | - | chr3_3:70283999-70284018 | None:intergenic | 55.0% | |
| AGTGTGCAAGGGGAAGAGGA+TGG | + | chr3_3:70283999-70284018 | Msa0468600:CDS | 55.0% | |
| ACAGTTCTGCGAGCTCGAGC+TGG | + | chr3_3:70283527-70283546 | Msa0468600:CDS | 60.0% | |
| TCCACCACCTCCTTTGACGG+TGG | + | chr3_3:70283602-70283621 | Msa0468600:CDS | 60.0% | |
| ATCGAGGACGCCACCGTCAA+AGG | - | chr3_3:70283615-70283634 | None:intergenic | 60.0% | |
| GCCTAGTGTGCAAGGGGAAG+AGG | + | chr3_3:70283995-70284014 | Msa0468600:CDS | 60.0% | |
| CAGCATCACTCGGACCCCTA+AGG | - | chr3_3:70284254-70284273 | None:intergenic | 60.0% | |
| TTGGAGGGTCTTTGGACCCG+TGG | + | chr3_3:70284950-70284969 | Msa0468600:CDS | 60.0% | |
| TGGAGGGTCTTTGGACCCGT+GGG | + | chr3_3:70284951-70284970 | Msa0468600:CDS | 60.0% | |
| ACAGTTCTGCGAGCTCGAGC+TGG | + | chr3_3:70283527-70283546 | Msa0468600:CDS | 60.0% | |
| TCCACCACCTCCTTTGACGG+TGG | + | chr3_3:70283602-70283621 | Msa0468600:CDS | 60.0% | |
| ATCGAGGACGCCACCGTCAA+AGG | - | chr3_3:70283615-70283634 | None:intergenic | 60.0% | |
| GCCTAGTGTGCAAGGGGAAG+AGG | + | chr3_3:70283995-70284014 | Msa0468600:CDS | 60.0% | |
| CAGCATCACTCGGACCCCTA+AGG | - | chr3_3:70284254-70284273 | None:intergenic | 60.0% | |
| TTGGAGGGTCTTTGGACCCG+TGG | + | chr3_3:70284950-70284969 | Msa0468600:CDS | 60.0% | |
| TGGAGGGTCTTTGGACCCGT+GGG | + | chr3_3:70284951-70284970 | Msa0468600:CDS | 60.0% | |
| GCCACCGTCAAAGGAGGTGG+TGG | - | chr3_3:70283606-70283625 | None:intergenic | 65.0% | |
| GACGCCACCGTCAAAGGAGG+TGG | - | chr3_3:70283609-70283628 | None:intergenic | 65.0% | |
| GAGGACGCCACCGTCAAAGG+AGG | - | chr3_3:70283612-70283631 | None:intergenic | 65.0% | |
| GCCACCGTCAAAGGAGGTGG+TGG | - | chr3_3:70283606-70283625 | None:intergenic | 65.0% | |
| GACGCCACCGTCAAAGGAGG+TGG | - | chr3_3:70283609-70283628 | None:intergenic | 65.0% | |
| GAGGACGCCACCGTCAAAGG+AGG | - | chr3_3:70283612-70283631 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 70283521 | 70284997 | 70283521 | ID=Msa0468600;Name=Msa0468600 |
| chr3_3 | mRNA | 70283521 | 70284997 | 70283521 | ID=Msa0468600-mRNA-1;Parent=Msa0468600;Name=Msa0468600-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|0|0|1|0.5|0.66|3|0|136 |
| chr3_3 | exon | 70283521 | 70283757 | 70283521 | ID=Msa0468600-mRNA-1:exon:16924;Parent=Msa0468600-mRNA-1 |
| chr3_3 | exon | 70283972 | 70284044 | 70283972 | ID=Msa0468600-mRNA-1:exon:16925;Parent=Msa0468600-mRNA-1 |
| chr3_3 | exon | 70284900 | 70284997 | 70284900 | ID=Msa0468600-mRNA-1:exon:16926;Parent=Msa0468600-mRNA-1 |
| chr3_3 | CDS | 70283521 | 70283757 | 70283521 | ID=Msa0468600-mRNA-1:cds;Parent=Msa0468600-mRNA-1 |
| chr3_3 | CDS | 70283972 | 70284044 | 70283972 | ID=Msa0468600-mRNA-1:cds;Parent=Msa0468600-mRNA-1 |
| chr3_3 | CDS | 70284900 | 70284997 | 70284900 | ID=Msa0468600-mRNA-1:cds;Parent=Msa0468600-mRNA-1 |
| Gene Sequence |
| Protein sequence |
