AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0880140


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880140 MtrunA17_Chr1g0168941 97.425 233 4 1 1 231 1 233 1.13e-155 431
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0880140 AT4G13540.1 46.061 165 71 4 49 212 37 184 1.13e-32 118
Msa0880140 AT3G23930.1 41.279 172 78 4 52 212 40 199 1.15e-23 95.1

Find 74 sgRNAs with CRISPR-Local

Find 197 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCACATCTAAAATCTAAAAT+TGG 0.233307 6_1:-26229821 Msa0880140:three_prime_UTR
TGAGAAAGAGTGGGAATTAA+TGG 0.247721 6_1:-26230853 Msa0880140:CDS
ACTTACCATCATATGTTCTT+TGG 0.249382 6_1:+26230718 None:intergenic
GAAGAAGTTGAAAATCAAAT+TGG 0.250274 6_1:-26229884 Msa0880140:CDS
TTCTTCTCTTTAGTTTGAAT+TGG 0.254934 6_1:+26229904 None:intergenic
AAAGCTTTAAAAGCTCAATT+AGG 0.297525 6_1:-26230012 Msa0880140:CDS
GATAATGGTGTTTGCTTTCA+AGG 0.301137 6_1:-26231000 Msa0880140:CDS
ATTAATGGGGACTAAGCTTT+TGG 0.315398 6_1:-26230838 Msa0880140:CDS
AAAGGGAATTTGACTTGTTA+AGG 0.331176 6_1:-26229960 Msa0880140:CDS
AAATCTAAAATTGGTTGAAT+AGG 0.347060 6_1:-26229812 Msa0880140:three_prime_UTR
TAAAGGAGATAATGTGTGAT+AGG 0.355573 6_1:-26231052 Msa0880140:CDS
ATAATTAAGAGGGTTAAATA+TGG 0.372889 6_1:+26231241 None:intergenic
ACTTCTACAAGAAGAAATAA+AGG 0.374088 6_1:-26231069 Msa0880140:CDS
TACTGAATATGCCATGTCTA+AGG 0.379067 6_1:-26229603 Msa0880140:three_prime_UTR
GAACTATGAGAGGGAGATAA+TGG 0.387809 6_1:-26231015 Msa0880140:CDS
GAGAAAGAGTGGGAATTAAT+GGG 0.405188 6_1:-26230852 Msa0880140:CDS
AAAAGAGGATAATAATTAAG+AGG 0.425100 6_1:+26231230 None:intergenic
GAGGGAAGTGGTGGAAGAGA+AGG 0.429388 6_1:-26230925 Msa0880140:CDS
AAGAGAAGGAAGAGAAGATA+AGG 0.430927 6_1:-26230911 Msa0880140:CDS
AAGAAGTTGAAAATCAAATT+GGG 0.435875 6_1:-26229883 Msa0880140:CDS
GGTGAAGCAGTTGAGGGAAG+TGG 0.438865 6_1:-26230937 Msa0880140:CDS
AAGAAGAGGTGAAGCAGTTG+AGG 0.440787 6_1:-26230944 Msa0880140:CDS
TCACAGGAGATGGTTTGTAT+TGG 0.451338 6_1:-26230104 Msa0880140:intron
AAGTCCTTTGGATCTTGAAA+AGG 0.454440 6_1:-26229683 Msa0880140:three_prime_UTR
AGAAGAATTGTGAGAAAGAG+TGG 0.454742 6_1:-26230863 Msa0880140:CDS
ATAAGGGAGATGGAAGAGGT+TGG 0.460472 6_1:-26230894 Msa0880140:CDS
TTGCTTTCAAGGAGGCAGAT+TGG 0.464224 6_1:-26230989 Msa0880140:CDS
AAGAAAGGTACAAACAAGAA+AGG 0.469395 6_1:-26229978 Msa0880140:CDS
TTAAATATGGAGTTATGTAC+AGG 0.475012 6_1:+26231254 None:intergenic
TTATTATATAGATTTAAATA+CGG 0.476164 6_1:-26229554 Msa0880140:three_prime_UTR
AGAGAAGGAAGAGAAGATAA+GGG 0.476340 6_1:-26230910 Msa0880140:CDS
AGAAGAGGTGAAGCAGTTGA+GGG 0.480459 6_1:-26230943 Msa0880140:CDS
AAGAGAGTAGGAACTATGAG+AGG 0.487797 6_1:-26231025 Msa0880140:CDS
GAAGATAAGGGAGATGGAAG+AGG 0.488344 6_1:-26230898 Msa0880140:CDS
TATGGAGTTATGTACAGGTT+AGG 0.492116 6_1:+26231259 None:intergenic
TACAAATTGAAAATCTGAAG+AGG 0.492525 6_1:-26230062 Msa0880140:CDS
CTACAAGGAATTAAAATAAG+TGG 0.492578 6_1:+26229754 None:intergenic
GTGATAGGGAGAAAGAGAGT+AGG 0.501313 6_1:-26231037 Msa0880140:CDS
GGAAGAGAAGATAAGGGAGA+TGG 0.503969 6_1:-26230904 Msa0880140:CDS
TCTTGCAATTAAGAATGAGT+TGG 0.505081 6_1:-26230751 Msa0880140:CDS
GAGATGAAGCTGTTGAGAAG+TGG 0.508742 6_1:-26230785 Msa0880140:CDS
TAGGTTCAGTGGAGAAAGAA+AGG 0.512086 6_1:-26229993 Msa0880140:CDS
GAAGCAGTTGAGGGAAGTGG+TGG 0.513840 6_1:-26230934 Msa0880140:CDS
AAAAGCTCAATTAGGTTCAG+TGG 0.518823 6_1:-26230004 Msa0880140:CDS
AGAGAGTAGGAACTATGAGA+GGG 0.522297 6_1:-26231024 Msa0880140:CDS
CTCATCCAAAGAACATATGA+TGG 0.522947 6_1:-26230723 Msa0880140:intron
ACAAGGGGCCAATTCAAAGA+TGG 0.524101 6_1:-26231171 Msa0880140:exon
AAAGGAGATAATGTGTGATA+GGG 0.526845 6_1:-26231051 Msa0880140:CDS
GATGAAGAGGTTGAAAGAAG+AGG 0.528949 6_1:-26230958 Msa0880140:CDS
AGAAAGGTACAAACAAGAAA+GGG 0.530283 6_1:-26229977 Msa0880140:CDS
TTATAGTGAGAGATGAAAAG+AGG 0.531477 6_1:+26231215 None:intergenic
GAAAAGGACACAAAATATGA+AGG 0.534850 6_1:-26229667 Msa0880140:three_prime_UTR
CAAGGGGCCAATTCAAAGAT+GGG 0.538294 6_1:-26231170 Msa0880140:exon
GGAGATGGAAGAGGTTGGAA+TGG 0.546010 6_1:-26230889 Msa0880140:CDS
ACTTGTTAAGGCAAAGCTTG+AGG 0.554263 6_1:-26229948 Msa0880140:CDS
GGAAAATAAAATGCAAACAT+TGG 0.554585 6_1:-26229862 Msa0880140:exon
AAAGAGGATAATAATTAAGA+GGG 0.562833 6_1:+26231231 None:intergenic
ATTGGAAACAAGAGATGAAG+AGG 0.564436 6_1:-26230971 Msa0880140:CDS
CAAAGCTTGAGGATCATGAA+TGG 0.565818 6_1:-26229937 Msa0880140:CDS
CATTCACTACTCCTTAGACA+TGG 0.567542 6_1:+26229592 None:intergenic
AAACTACAACACTTGTCACA+AGG 0.585905 6_1:-26231188 Msa0880140:five_prime_UTR
ACAAATTGAAAATCTGAAGA+GGG 0.598118 6_1:-26230061 Msa0880140:CDS
GAAGAATTGTGAGAAAGAGT+GGG 0.599083 6_1:-26230862 Msa0880140:CDS
AACTACAACACTTGTCACAA+GGG 0.607391 6_1:-26231187 Msa0880140:five_prime_UTR
AAGGGGCCAATTCAAAGATG+GGG 0.610731 6_1:-26231169 Msa0880140:exon
AGAAAGAGTGGGAATTAATG+GGG 0.618319 6_1:-26230851 Msa0880140:CDS
AGATGAAGGAGGAAAGAGCA+AGG 0.618929 6_1:-26230809 Msa0880140:CDS
TGGTTTGTATTGGAAAGCTG+AGG 0.636251 6_1:-26230094 Msa0880140:CDS
ACTACATAAGCCAGTCCACA+AGG 0.639940 6_1:+26229626 None:intergenic
TTTGGTTCAAGAGATGAAGG+AGG 0.645416 6_1:-26230820 Msa0880140:CDS
AGGGGCCAATTCAAAGATGG+GGG 0.664758 6_1:-26231168 Msa0880140:exon
ACTACAACACTTGTCACAAG+GGG 0.671010 6_1:-26231186 Msa0880140:five_prime_UTR
AATGGTGTTTGCTTTCAAGG+AGG 0.717432 6_1:-26230997 Msa0880140:CDS
GGGGCCAATTCAAAGATGGG+GGG 0.731569 6_1:-26231167 Msa0880140:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTCATTACATATTTTTG+TGG + chr6_1:26229715-26229734 None:intergenic 15.0%
!!! AAACTATAAACTGTTTTTAT+AGG + chr6_1:26230361-26230380 None:intergenic 15.0%
!!! AAATTCATTACATATTTTTG+TGG + chr6_1:26229715-26229734 None:intergenic 15.0%
!!! AAACTATAAACTGTTTTTAT+AGG + chr6_1:26230361-26230380 None:intergenic 15.0%
!! ATAATTAAGAGGGTTAAATA+TGG + chr6_1:26229581-26229600 None:intergenic 20.0%
!! AAAGAGGATAATAATTAAGA+GGG + chr6_1:26229591-26229610 None:intergenic 20.0%
!! AAAAGAGGATAATAATTAAG+AGG + chr6_1:26229592-26229611 None:intergenic 20.0%
!! AAATACAAACACTAATTGTT+TGG + chr6_1:26230472-26230491 None:intergenic 20.0%
!!! ATTTTGAAAAGTACTATGAT+GGG + chr6_1:26230570-26230589 None:intergenic 20.0%
!!! AATTTTGAAAAGTACTATGA+TGG + chr6_1:26230571-26230590 None:intergenic 20.0%
!! ATTAATATGTGACAATAATG+TGG - chr6_1:26230596-26230615 Msa0880140:intron 20.0%
!! AAGAAGTTGAAAATCAAATT+GGG - chr6_1:26230936-26230955 Msa0880140:CDS 20.0%
!!! TCACATCTAAAATCTAAAAT+TGG - chr6_1:26230998-26231017 Msa0880140:CDS 20.0%
!!! AAATCTAAAATTGGTTGAAT+AGG - chr6_1:26231007-26231026 Msa0880140:CDS 20.0%
!!! ACACCTTTTTAAAATAAGTA+AGG - chr6_1:26231097-26231116 Msa0880140:CDS 20.0%
!!! TTGCCTTACTTATTTTAAAA+AGG + chr6_1:26231103-26231122 None:intergenic 20.0%
!! ACTATAAAAAAAAAGTCCTT+TGG - chr6_1:26231124-26231143 Msa0880140:CDS 20.0%
!! ATAATTAAGAGGGTTAAATA+TGG + chr6_1:26229581-26229600 None:intergenic 20.0%
!! AAAGAGGATAATAATTAAGA+GGG + chr6_1:26229591-26229610 None:intergenic 20.0%
!! AAAAGAGGATAATAATTAAG+AGG + chr6_1:26229592-26229611 None:intergenic 20.0%
!! AAATACAAACACTAATTGTT+TGG + chr6_1:26230472-26230491 None:intergenic 20.0%
!!! ATTTTGAAAAGTACTATGAT+GGG + chr6_1:26230570-26230589 None:intergenic 20.0%
!!! AATTTTGAAAAGTACTATGA+TGG + chr6_1:26230571-26230590 None:intergenic 20.0%
!! ATTAATATGTGACAATAATG+TGG - chr6_1:26230596-26230615 Msa0880140:intron 20.0%
!! AAGAAGTTGAAAATCAAATT+GGG - chr6_1:26230936-26230955 Msa0880140:CDS 20.0%
!!! TCACATCTAAAATCTAAAAT+TGG - chr6_1:26230998-26231017 Msa0880140:CDS 20.0%
!!! AAATCTAAAATTGGTTGAAT+AGG - chr6_1:26231007-26231026 Msa0880140:CDS 20.0%
!!! ACACCTTTTTAAAATAAGTA+AGG - chr6_1:26231097-26231116 Msa0880140:CDS 20.0%
!!! TTGCCTTACTTATTTTAAAA+AGG + chr6_1:26231103-26231122 None:intergenic 20.0%
!! ACTATAAAAAAAAAGTCCTT+TGG - chr6_1:26231124-26231143 Msa0880140:CDS 20.0%
! TTAAATATGGAGTTATGTAC+AGG + chr6_1:26229568-26229587 None:intergenic 25.0%
! ACTTCTACAAGAAGAAATAA+AGG - chr6_1:26229750-26229769 Msa0880140:three_prime_UTR 25.0%
! TACAAATTGAAAATCTGAAG+AGG - chr6_1:26230757-26230776 Msa0880140:CDS 25.0%
! ACAAATTGAAAATCTGAAGA+GGG - chr6_1:26230758-26230777 Msa0880140:CDS 25.0%
!!! AAAGCTTTAAAAGCTCAATT+AGG - chr6_1:26230807-26230826 Msa0880140:CDS 25.0%
!!! TTCTTCTCTTTAGTTTGAAT+TGG + chr6_1:26230918-26230937 None:intergenic 25.0%
! GAAGAAGTTGAAAATCAAAT+TGG - chr6_1:26230935-26230954 Msa0880140:CDS 25.0%
! GGAAAATAAAATGCAAACAT+TGG - chr6_1:26230957-26230976 Msa0880140:CDS 25.0%
! CTACAAGGAATTAAAATAAG+TGG + chr6_1:26231068-26231087 None:intergenic 25.0%
! AGGTGTAAAAATAAACTACA+AGG + chr6_1:26231083-26231102 None:intergenic 25.0%
!!! ATTAGCAATTTTTTTCCTTG+TGG - chr6_1:26231178-26231197 Msa0880140:five_prime_UTR 25.0%
! TTAAATATGGAGTTATGTAC+AGG + chr6_1:26229568-26229587 None:intergenic 25.0%
! ACTTCTACAAGAAGAAATAA+AGG - chr6_1:26229750-26229769 Msa0880140:three_prime_UTR 25.0%
! TACAAATTGAAAATCTGAAG+AGG - chr6_1:26230757-26230776 Msa0880140:CDS 25.0%
! ACAAATTGAAAATCTGAAGA+GGG - chr6_1:26230758-26230777 Msa0880140:CDS 25.0%
!!! AAAGCTTTAAAAGCTCAATT+AGG - chr6_1:26230807-26230826 Msa0880140:CDS 25.0%
!!! TTCTTCTCTTTAGTTTGAAT+TGG + chr6_1:26230918-26230937 None:intergenic 25.0%
! GAAGAAGTTGAAAATCAAAT+TGG - chr6_1:26230935-26230954 Msa0880140:CDS 25.0%
! GGAAAATAAAATGCAAACAT+TGG - chr6_1:26230957-26230976 Msa0880140:CDS 25.0%
! CTACAAGGAATTAAAATAAG+TGG + chr6_1:26231068-26231087 None:intergenic 25.0%
! AGGTGTAAAAATAAACTACA+AGG + chr6_1:26231083-26231102 None:intergenic 25.0%
!!! ATTAGCAATTTTTTTCCTTG+TGG - chr6_1:26231178-26231197 Msa0880140:five_prime_UTR 25.0%
TTATAGTGAGAGATGAAAAG+AGG + chr6_1:26229607-26229626 None:intergenic 30.0%
TAAAGGAGATAATGTGTGAT+AGG - chr6_1:26229767-26229786 Msa0880140:three_prime_UTR 30.0%
AAAGGAGATAATGTGTGATA+GGG - chr6_1:26229768-26229787 Msa0880140:three_prime_UTR 30.0%
TCTTGCAATTAAGAATGAGT+TGG - chr6_1:26230068-26230087 Msa0880140:CDS 30.0%
ACTTACCATCATATGTTCTT+TGG + chr6_1:26230104-26230123 None:intergenic 30.0%
! TACTTGAGCTTATTTGCTTT+TGG - chr6_1:26230684-26230703 Msa0880140:intron 30.0%
! AAGAAAGGTACAAACAAGAA+AGG - chr6_1:26230841-26230860 Msa0880140:CDS 30.0%
! AGAAAGGTACAAACAAGAAA+GGG - chr6_1:26230842-26230861 Msa0880140:CDS 30.0%
!! AAAGGGAATTTGACTTGTTA+AGG - chr6_1:26230859-26230878 Msa0880140:CDS 30.0%
GAAAAGGACACAAAATATGA+AGG - chr6_1:26231152-26231171 Msa0880140:CDS 30.0%
TTATAGTGAGAGATGAAAAG+AGG + chr6_1:26229607-26229626 None:intergenic 30.0%
TAAAGGAGATAATGTGTGAT+AGG - chr6_1:26229767-26229786 Msa0880140:three_prime_UTR 30.0%
AAAGGAGATAATGTGTGATA+GGG - chr6_1:26229768-26229787 Msa0880140:three_prime_UTR 30.0%
TCTTGCAATTAAGAATGAGT+TGG - chr6_1:26230068-26230087 Msa0880140:CDS 30.0%
ACTTACCATCATATGTTCTT+TGG + chr6_1:26230104-26230123 None:intergenic 30.0%
! TACTTGAGCTTATTTGCTTT+TGG - chr6_1:26230684-26230703 Msa0880140:intron 30.0%
! AAGAAAGGTACAAACAAGAA+AGG - chr6_1:26230841-26230860 Msa0880140:CDS 30.0%
! AGAAAGGTACAAACAAGAAA+GGG - chr6_1:26230842-26230861 Msa0880140:CDS 30.0%
!! AAAGGGAATTTGACTTGTTA+AGG - chr6_1:26230859-26230878 Msa0880140:CDS 30.0%
GAAAAGGACACAAAATATGA+AGG - chr6_1:26231152-26231171 Msa0880140:CDS 30.0%
TATGGAGTTATGTACAGGTT+AGG + chr6_1:26229563-26229582 None:intergenic 35.0%
AAACTACAACACTTGTCACA+AGG - chr6_1:26229631-26229650 Msa0880140:three_prime_UTR 35.0%
AACTACAACACTTGTCACAA+GGG - chr6_1:26229632-26229651 Msa0880140:three_prime_UTR 35.0%
! GATAATGGTGTTTGCTTTCA+AGG - chr6_1:26229819-26229838 Msa0880140:three_prime_UTR 35.0%
ATTGGAAACAAGAGATGAAG+AGG - chr6_1:26229848-26229867 Msa0880140:three_prime_UTR 35.0%
AAGAGAAGGAAGAGAAGATA+AGG - chr6_1:26229908-26229927 Msa0880140:CDS 35.0%
AGAGAAGGAAGAGAAGATAA+GGG - chr6_1:26229909-26229928 Msa0880140:CDS 35.0%
AGAAGAATTGTGAGAAAGAG+TGG - chr6_1:26229956-26229975 Msa0880140:CDS 35.0%
GAAGAATTGTGAGAAAGAGT+GGG - chr6_1:26229957-26229976 Msa0880140:CDS 35.0%
TGAGAAAGAGTGGGAATTAA+TGG - chr6_1:26229966-26229985 Msa0880140:CDS 35.0%
GAGAAAGAGTGGGAATTAAT+GGG - chr6_1:26229967-26229986 Msa0880140:CDS 35.0%
AGAAAGAGTGGGAATTAATG+GGG - chr6_1:26229968-26229987 Msa0880140:CDS 35.0%
! ATTAATGGGGACTAAGCTTT+TGG - chr6_1:26229981-26230000 Msa0880140:CDS 35.0%
CTCATCCAAAGAACATATGA+TGG - chr6_1:26230096-26230115 Msa0880140:CDS 35.0%
!! GCTTTTGGAAATATACTCAC+AGG - chr6_1:26230699-26230718 Msa0880140:intron 35.0%
AAAAGCTCAATTAGGTTCAG+TGG - chr6_1:26230815-26230834 Msa0880140:CDS 35.0%
AAGTCCTTTGGATCTTGAAA+AGG - chr6_1:26231136-26231155 Msa0880140:CDS 35.0%
!!! CAATTTTTTTCCTTGTGGAC+TGG - chr6_1:26231183-26231202 Msa0880140:five_prime_UTR 35.0%
TACTGAATATGCCATGTCTA+AGG - chr6_1:26231216-26231235 Msa0880140:five_prime_UTR 35.0%
TATGGAGTTATGTACAGGTT+AGG + chr6_1:26229563-26229582 None:intergenic 35.0%
AAACTACAACACTTGTCACA+AGG - chr6_1:26229631-26229650 Msa0880140:three_prime_UTR 35.0%
AACTACAACACTTGTCACAA+GGG - chr6_1:26229632-26229651 Msa0880140:three_prime_UTR 35.0%
! GATAATGGTGTTTGCTTTCA+AGG - chr6_1:26229819-26229838 Msa0880140:three_prime_UTR 35.0%
ATTGGAAACAAGAGATGAAG+AGG - chr6_1:26229848-26229867 Msa0880140:three_prime_UTR 35.0%
AAGAGAAGGAAGAGAAGATA+AGG - chr6_1:26229908-26229927 Msa0880140:CDS 35.0%
AGAGAAGGAAGAGAAGATAA+GGG - chr6_1:26229909-26229928 Msa0880140:CDS 35.0%
AGAAGAATTGTGAGAAAGAG+TGG - chr6_1:26229956-26229975 Msa0880140:CDS 35.0%
GAAGAATTGTGAGAAAGAGT+GGG - chr6_1:26229957-26229976 Msa0880140:CDS 35.0%
TGAGAAAGAGTGGGAATTAA+TGG - chr6_1:26229966-26229985 Msa0880140:CDS 35.0%
GAGAAAGAGTGGGAATTAAT+GGG - chr6_1:26229967-26229986 Msa0880140:CDS 35.0%
AGAAAGAGTGGGAATTAATG+GGG - chr6_1:26229968-26229987 Msa0880140:CDS 35.0%
! ATTAATGGGGACTAAGCTTT+TGG - chr6_1:26229981-26230000 Msa0880140:CDS 35.0%
CTCATCCAAAGAACATATGA+TGG - chr6_1:26230096-26230115 Msa0880140:CDS 35.0%
!! GCTTTTGGAAATATACTCAC+AGG - chr6_1:26230699-26230718 Msa0880140:intron 35.0%
AAAAGCTCAATTAGGTTCAG+TGG - chr6_1:26230815-26230834 Msa0880140:CDS 35.0%
AAGTCCTTTGGATCTTGAAA+AGG - chr6_1:26231136-26231155 Msa0880140:CDS 35.0%
!!! CAATTTTTTTCCTTGTGGAC+TGG - chr6_1:26231183-26231202 Msa0880140:five_prime_UTR 35.0%
TACTGAATATGCCATGTCTA+AGG - chr6_1:26231216-26231235 Msa0880140:five_prime_UTR 35.0%
ACTACAACACTTGTCACAAG+GGG - chr6_1:26229633-26229652 Msa0880140:three_prime_UTR 40.0%
AAGAGAGTAGGAACTATGAG+AGG - chr6_1:26229794-26229813 Msa0880140:three_prime_UTR 40.0%
AGAGAGTAGGAACTATGAGA+GGG - chr6_1:26229795-26229814 Msa0880140:three_prime_UTR 40.0%
GAACTATGAGAGGGAGATAA+TGG - chr6_1:26229804-26229823 Msa0880140:three_prime_UTR 40.0%
AATGGTGTTTGCTTTCAAGG+AGG - chr6_1:26229822-26229841 Msa0880140:three_prime_UTR 40.0%
GATGAAGAGGTTGAAAGAAG+AGG - chr6_1:26229861-26229880 Msa0880140:exon 40.0%
!!! GCTTTTGGTTCAAGAGATGA+AGG - chr6_1:26229996-26230015 Msa0880140:CDS 40.0%
! TTTGGTTCAAGAGATGAAGG+AGG - chr6_1:26229999-26230018 Msa0880140:CDS 40.0%
!! GCCACACACTACTTTTCAAA+GGG + chr6_1:26230533-26230552 None:intergenic 40.0%
!! TGCCACACACTACTTTTCAA+AGG + chr6_1:26230534-26230553 None:intergenic 40.0%
AAAAGTAGTGTGTGGCAGAT+GGG - chr6_1:26230537-26230556 Msa0880140:intron 40.0%
GGAAATATACTCACAGGAGA+TGG - chr6_1:26230705-26230724 Msa0880140:intron 40.0%
! TCACAGGAGATGGTTTGTAT+TGG - chr6_1:26230715-26230734 Msa0880140:intron 40.0%
! TGGTTTGTATTGGAAAGCTG+AGG - chr6_1:26230725-26230744 Msa0880140:CDS 40.0%
TAGGTTCAGTGGAGAAAGAA+AGG - chr6_1:26230826-26230845 Msa0880140:CDS 40.0%
! ACTTGTTAAGGCAAAGCTTG+AGG - chr6_1:26230871-26230890 Msa0880140:CDS 40.0%
CAAAGCTTGAGGATCATGAA+TGG - chr6_1:26230882-26230901 Msa0880140:CDS 40.0%
!! GTGTCCTTTTCAAGATCCAA+AGG + chr6_1:26231143-26231162 None:intergenic 40.0%
CATTCACTACTCCTTAGACA+TGG + chr6_1:26231230-26231249 None:intergenic 40.0%
ACTACAACACTTGTCACAAG+GGG - chr6_1:26229633-26229652 Msa0880140:three_prime_UTR 40.0%
AAGAGAGTAGGAACTATGAG+AGG - chr6_1:26229794-26229813 Msa0880140:three_prime_UTR 40.0%
AGAGAGTAGGAACTATGAGA+GGG - chr6_1:26229795-26229814 Msa0880140:three_prime_UTR 40.0%
GAACTATGAGAGGGAGATAA+TGG - chr6_1:26229804-26229823 Msa0880140:three_prime_UTR 40.0%
AATGGTGTTTGCTTTCAAGG+AGG - chr6_1:26229822-26229841 Msa0880140:three_prime_UTR 40.0%
GATGAAGAGGTTGAAAGAAG+AGG - chr6_1:26229861-26229880 Msa0880140:exon 40.0%
!!! GCTTTTGGTTCAAGAGATGA+AGG - chr6_1:26229996-26230015 Msa0880140:CDS 40.0%
! TTTGGTTCAAGAGATGAAGG+AGG - chr6_1:26229999-26230018 Msa0880140:CDS 40.0%
!! GCCACACACTACTTTTCAAA+GGG + chr6_1:26230533-26230552 None:intergenic 40.0%
!! TGCCACACACTACTTTTCAA+AGG + chr6_1:26230534-26230553 None:intergenic 40.0%
AAAAGTAGTGTGTGGCAGAT+GGG - chr6_1:26230537-26230556 Msa0880140:intron 40.0%
GGAAATATACTCACAGGAGA+TGG - chr6_1:26230705-26230724 Msa0880140:intron 40.0%
! TCACAGGAGATGGTTTGTAT+TGG - chr6_1:26230715-26230734 Msa0880140:intron 40.0%
! TGGTTTGTATTGGAAAGCTG+AGG - chr6_1:26230725-26230744 Msa0880140:CDS 40.0%
TAGGTTCAGTGGAGAAAGAA+AGG - chr6_1:26230826-26230845 Msa0880140:CDS 40.0%
! ACTTGTTAAGGCAAAGCTTG+AGG - chr6_1:26230871-26230890 Msa0880140:CDS 40.0%
CAAAGCTTGAGGATCATGAA+TGG - chr6_1:26230882-26230901 Msa0880140:CDS 40.0%
!! GTGTCCTTTTCAAGATCCAA+AGG + chr6_1:26231143-26231162 None:intergenic 40.0%
CATTCACTACTCCTTAGACA+TGG + chr6_1:26231230-26231249 None:intergenic 40.0%
ACAAGGGGCCAATTCAAAGA+TGG - chr6_1:26229648-26229667 Msa0880140:three_prime_UTR 45.0%
CAAGGGGCCAATTCAAAGAT+GGG - chr6_1:26229649-26229668 Msa0880140:three_prime_UTR 45.0%
AAGGGGCCAATTCAAAGATG+GGG - chr6_1:26229650-26229669 Msa0880140:three_prime_UTR 45.0%
ACTTCCCCCCATCTTTGAAT+TGG + chr6_1:26229659-26229678 None:intergenic 45.0%
GTGATAGGGAGAAAGAGAGT+AGG - chr6_1:26229782-26229801 Msa0880140:three_prime_UTR 45.0%
TTGCTTTCAAGGAGGCAGAT+TGG - chr6_1:26229830-26229849 Msa0880140:three_prime_UTR 45.0%
AAGAAGAGGTGAAGCAGTTG+AGG - chr6_1:26229875-26229894 Msa0880140:exon 45.0%
AGAAGAGGTGAAGCAGTTGA+GGG - chr6_1:26229876-26229895 Msa0880140:CDS 45.0%
GGAAGAGAAGATAAGGGAGA+TGG - chr6_1:26229915-26229934 Msa0880140:CDS 45.0%
GAAGATAAGGGAGATGGAAG+AGG - chr6_1:26229921-26229940 Msa0880140:CDS 45.0%
ATAAGGGAGATGGAAGAGGT+TGG - chr6_1:26229925-26229944 Msa0880140:CDS 45.0%
AGATGAAGGAGGAAAGAGCA+AGG - chr6_1:26230010-26230029 Msa0880140:CDS 45.0%
GAGATGAAGCTGTTGAGAAG+TGG - chr6_1:26230034-26230053 Msa0880140:CDS 45.0%
! GCCCTTTGAAAAGTAGTGTG+TGG - chr6_1:26230529-26230548 Msa0880140:intron 45.0%
GAAAAGTAGTGTGTGGCAGA+TGG - chr6_1:26230536-26230555 Msa0880140:intron 45.0%
AAAGTAGTGTGTGGCAGATG+GGG - chr6_1:26230538-26230557 Msa0880140:intron 45.0%
ACTACATAAGCCAGTCCACA+AGG + chr6_1:26231196-26231215 None:intergenic 45.0%
ACAAGGGGCCAATTCAAAGA+TGG - chr6_1:26229648-26229667 Msa0880140:three_prime_UTR 45.0%
CAAGGGGCCAATTCAAAGAT+GGG - chr6_1:26229649-26229668 Msa0880140:three_prime_UTR 45.0%
AAGGGGCCAATTCAAAGATG+GGG - chr6_1:26229650-26229669 Msa0880140:three_prime_UTR 45.0%
ACTTCCCCCCATCTTTGAAT+TGG + chr6_1:26229659-26229678 None:intergenic 45.0%
GTGATAGGGAGAAAGAGAGT+AGG - chr6_1:26229782-26229801 Msa0880140:three_prime_UTR 45.0%
TTGCTTTCAAGGAGGCAGAT+TGG - chr6_1:26229830-26229849 Msa0880140:three_prime_UTR 45.0%
AAGAAGAGGTGAAGCAGTTG+AGG - chr6_1:26229875-26229894 Msa0880140:exon 45.0%
AGAAGAGGTGAAGCAGTTGA+GGG - chr6_1:26229876-26229895 Msa0880140:CDS 45.0%
GGAAGAGAAGATAAGGGAGA+TGG - chr6_1:26229915-26229934 Msa0880140:CDS 45.0%
GAAGATAAGGGAGATGGAAG+AGG - chr6_1:26229921-26229940 Msa0880140:CDS 45.0%
ATAAGGGAGATGGAAGAGGT+TGG - chr6_1:26229925-26229944 Msa0880140:CDS 45.0%
AGATGAAGGAGGAAAGAGCA+AGG - chr6_1:26230010-26230029 Msa0880140:CDS 45.0%
GAGATGAAGCTGTTGAGAAG+TGG - chr6_1:26230034-26230053 Msa0880140:CDS 45.0%
! GCCCTTTGAAAAGTAGTGTG+TGG - chr6_1:26230529-26230548 Msa0880140:intron 45.0%
GAAAAGTAGTGTGTGGCAGA+TGG - chr6_1:26230536-26230555 Msa0880140:intron 45.0%
AAAGTAGTGTGTGGCAGATG+GGG - chr6_1:26230538-26230557 Msa0880140:intron 45.0%
ACTACATAAGCCAGTCCACA+AGG + chr6_1:26231196-26231215 None:intergenic 45.0%
!!! AAAATTAAATAAAATTCTTT+TGG + chr6_1:26230387-26230406 None:intergenic 5.0%
!! TTATTATATAGATTTAAATA+CGG - chr6_1:26231265-26231284 Msa0880140:five_prime_UTR 5.0%
!!! AAAATTAAATAAAATTCTTT+TGG + chr6_1:26230387-26230406 None:intergenic 5.0%
AGGGGCCAATTCAAAGATGG+GGG - chr6_1:26229651-26229670 Msa0880140:three_prime_UTR 50.0%
GGAGATGGAAGAGGTTGGAA+TGG - chr6_1:26229930-26229949 Msa0880140:CDS 50.0%
AGGGGCCAATTCAAAGATGG+GGG - chr6_1:26229651-26229670 Msa0880140:three_prime_UTR 50.0%
GGAGATGGAAGAGGTTGGAA+TGG - chr6_1:26229930-26229949 Msa0880140:CDS 50.0%
GGGGCCAATTCAAAGATGGG+GGG - chr6_1:26229652-26229671 Msa0880140:three_prime_UTR 55.0%
GGTGAAGCAGTTGAGGGAAG+TGG - chr6_1:26229882-26229901 Msa0880140:CDS 55.0%
GAAGCAGTTGAGGGAAGTGG+TGG - chr6_1:26229885-26229904 Msa0880140:CDS 55.0%
! GAGGGAAGTGGTGGAAGAGA+AGG - chr6_1:26229894-26229913 Msa0880140:CDS 55.0%
GGGGCCAATTCAAAGATGGG+GGG - chr6_1:26229652-26229671 Msa0880140:three_prime_UTR 55.0%
GGTGAAGCAGTTGAGGGAAG+TGG - chr6_1:26229882-26229901 Msa0880140:CDS 55.0%
GAAGCAGTTGAGGGAAGTGG+TGG - chr6_1:26229885-26229904 Msa0880140:CDS 55.0%
! GAGGGAAGTGGTGGAAGAGA+AGG - chr6_1:26229894-26229913 Msa0880140:CDS 55.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 26229554 26231287 26229554 ID=Msa0880140;Name=Msa0880140
chr6_1 mRNA 26229554 26231287 26229554 ID=Msa0880140-mRNA-1;Parent=Msa0880140;Name=Msa0880140-mRNA-1;_AED=0.00;_eAED=0.00;_QI=113|1|1|1|1|1|2|322|231
chr6_1 exon 26229554 26230120 26229554 ID=Msa0880140-mRNA-1:exon:6408;Parent=Msa0880140-mRNA-1
chr6_1 exon 26230724 26231287 26230724 ID=Msa0880140-mRNA-1:exon:6407;Parent=Msa0880140-mRNA-1
chr6_1 five_prime_UTR 26231175 26231287 26231175 ID=Msa0880140-mRNA-1:five_prime_utr;Parent=Msa0880140-mRNA-1
chr6_1 CDS 26230724 26231174 26230724 ID=Msa0880140-mRNA-1:cds;Parent=Msa0880140-mRNA-1
chr6_1 CDS 26229876 26230120 26229876 ID=Msa0880140-mRNA-1:cds;Parent=Msa0880140-mRNA-1
chr6_1 three_prime_UTR 26229554 26229875 26229554 ID=Msa0880140-mRNA-1:three_prime_utr;Parent=Msa0880140-mRNA-1
Gene Sequence

>Msa0880140

ATGGGGGGAAGTGTTAGTGTTAGCAAGAAAAATGAGATAAAGTATCCACAAAAATATGTAATGAATTTGAAAGAGAAAGTGAGACTTCTACAAGAAGAAATAAAGGAGATAATGTGTGATAGGGAGAAAGAGAGTAGGAACTATGAGAGGGAGATAATGGTGTTTGCTTTCAAGGAGGCAGATTGGAAACAAGAGATGAAGAGGTTGAAAGAAGAGGTGAAGCAGTTGAGGGAAGTGGTGGAAGAGAAGGAAGAGAAGATAAGGGAGATGGAAGAGGTTGGAATGGTTGAGAAGAATTGTGAGAAAGAGTGGGAATTAATGGGGACTAAGCTTTTGGTTCAAGAGATGAAGGAGGAAAGAGCAAGGAGAGATGAAGCTGTTGAGAAGTGGAAACAACTTTATCTTGCAATTAAGAATGAGTTGGATGATCTCATCCAAAGAACATATGATGGAGATGGTTTGTATTGGAAAGCTGAGGAAAATGACATACAAATTGAAAATCTGAAGAGGGAATTGCAAGAGAAAGAAGAAAGCATAAAAGCTTTAAAAGCTCAATTAGGTTCAGTGGAGAAAGAAAGGTACAAACAAGAAAGGGAATTTGACTTGTTAAGGCAAAGCTTGAGGATCATGAATGGCAAGAAGAATCCAATTCAAACTAAAGAGAAGAAGAAGTTGAAAATCAAATTGGGAAAATAA

Protein sequence

>Msa0880140

MGGSVSVSKKNEIKYPQKYVMNLKEKVRLLQEEIKEIMCDREKESRNYEREIMVFAFKEADWKQEMKRLKEEVKQLREVVEEKEEKIREMEEVGMVEKNCEKEWELMGTKLLVQEMKEERARRDEAVEKWKQLYLAIKNELDDLIQRTYDGDGLYWKAEENDIQIENLKRELQEKEESIKALKAQLGSVEKERYKQEREFDLLRQSLRIMNGKKNPIQTKEKKKLKIKLGK*