AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474200


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474200 MtrunA17_Chr3g0130971 99.422 346 2 0 1 346 1 346 0.0 694
Msa0474200 MtrunA17_Chr8g0385101 81.395 344 64 0 3 346 2 345 0.0 584
Msa0474200 MtrunA17_Chr4g0037541 62.805 328 115 1 1 328 1 321 3.00e-148 421
Msa0474200 MtrunA17_Chr8g0378181 62.116 293 111 0 3 295 4 296 9.78e-134 384
Msa0474200 MtrunA17_Chr5g0442091 56.358 346 143 5 3 342 4 347 1.81e-128 371
Msa0474200 MtrunA17_Chr2g0277341 61.775 293 112 0 3 295 14 306 8.70e-127 367
Msa0474200 MtrunA17_Chr3g0121551 56.211 322 139 2 3 322 4 325 4.68e-123 357
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474200 AT2G21120.1 65.176 313 103 1 4 316 3 309 9.92e-145 412
Msa0474200 AT4G38730.1 67.119 295 97 0 4 298 3 297 1.15e-144 412
Msa0474200 AT1G71900.1 58.559 333 125 3 3 335 16 335 1.76e-139 399
Msa0474200 AT1G71900.2 63.140 293 108 0 3 295 16 308 7.92e-138 395
Msa0474200 AT1G34470.1 62.799 293 109 0 3 295 16 308 4.91e-136 392
Msa0474200 AT4G09640.1 58.160 337 140 1 3 338 16 352 1.64e-125 365
Msa0474200 AT4G13800.5 61.364 308 119 0 5 312 7 314 1.01e-124 362
Msa0474200 AT4G13800.1 61.364 308 119 0 5 312 7 314 1.01e-124 362
Msa0474200 AT4G13800.8 61.364 308 119 0 5 312 7 314 1.01e-124 362
Msa0474200 AT4G13800.10 61.364 308 119 0 5 312 7 314 1.01e-124 362
Msa0474200 AT3G23870.1 64.261 291 104 0 5 295 7 297 3.84e-118 345
Msa0474200 AT3G23870.3 64.261 291 104 0 5 295 7 297 3.84e-118 345
Msa0474200 AT3G23870.2 64.261 291 104 0 5 295 7 297 3.84e-118 345
Msa0474200 AT3G23870.4 64.261 291 104 0 5 295 7 297 3.84e-118 345
Msa0474200 AT4G13800.6 64.122 262 94 0 3 264 5 266 5.82e-110 322
Msa0474200 AT4G13800.2 64.122 262 94 0 3 264 5 266 5.82e-110 322
Msa0474200 AT4G13800.9 62.609 230 86 0 3 232 5 234 6.58e-91 272
Msa0474200 AT4G13800.7 62.609 230 86 0 3 232 5 234 6.58e-91 272
Msa0474200 AT4G13800.4 62.609 230 86 0 3 232 5 234 6.58e-91 272
Msa0474200 AT4G13800.3 62.609 230 86 0 3 232 5 234 6.58e-91 272
Msa0474200 AT3G23870.5 60.476 210 83 0 86 295 8 217 1.40e-88 267

Find 118 sgRNAs with CRISPR-Local

Find 340 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCAGCGCAATTATGTTTA+AGG 0.107560 3_3:-77048442 Msa0474200:intron
GGATAATCTTAATTAAATTA+AGG 0.172289 3_3:+77045606 None:intergenic
GATGAAGAAGAATTTGATTT+TGG 0.196779 3_3:+77050465 None:intergenic
GATAGAACCCAAGCTTTAAT+TGG 0.204593 3_3:+77045267 None:intergenic
TTCATCTTGGCCGTTGTTTC+CGG 0.207425 3_3:-77050387 Msa0474200:CDS
GGGTGAGAAGTTACAGAAAA+TGG 0.211943 3_3:-77049631 Msa0474200:CDS
ATTGGAATATGCTCCATAAT+TGG 0.219095 3_3:-77049289 Msa0474200:CDS
GTTATCTTCTTCAACCTCTT+TGG 0.228989 3_3:-77050186 Msa0474200:CDS
TGGATATACCATGATACTTT+TGG 0.233104 3_3:+77045674 None:intergenic
TACTACTGCAAATACAAAAC+TGG 0.237363 3_3:+77045216 None:intergenic
CTTCTCATTTAGGACTATTC+TGG 0.239931 3_3:-77048323 Msa0474200:intron
AAGAAATGTAGCTGTGTTAT+AGG 0.249387 3_3:-77045419 Msa0474200:three_prime_UTR
TTACTTCTGTGCTAGAAATA+TGG 0.262020 3_3:-77049536 Msa0474200:CDS
GCTATTAAACTTACATTAGA+TGG 0.277983 3_3:-77049108 Msa0474200:CDS
CAGTTTAAATTACCTTAATA+TGG 0.300539 3_3:-77049019 Msa0474200:intron
TGTGCTAGAAATATGGCTTT+TGG 0.313475 3_3:-77049529 Msa0474200:CDS
TACAGTCAATGATCCAATTA+TGG 0.326528 3_3:+77049276 None:intergenic
GTGCTTTGAGTATTATTGTT+AGG 0.346869 3_3:-77049990 Msa0474200:intron
TACAGTATGAAGCAGAAATA+TGG 0.348057 3_3:-77045468 Msa0474200:intron
AGCTTTATTGCAGTGATTGT+TGG 0.355542 3_3:-77050072 Msa0474200:intron
GTCTTTATTAATTGTGCAGT+GGG 0.357367 3_3:+77050605 None:intergenic
CATATTAAGGTAATTTAAAC+TGG 0.357572 3_3:+77049020 None:intergenic
AGAAATGTAGCTGTGTTATA+GGG 0.360019 3_3:-77045418 Msa0474200:three_prime_UTR
ATCACTTGAAATGATCTTGC+TGG 0.376053 3_3:+77045585 None:intergenic
GAGTGATACTGACCATATTA+AGG 0.377874 3_3:+77049007 None:intergenic
ATTAATTGTGCAGTGGGGTT+GGG 0.381403 3_3:+77050611 None:intergenic
GATAATCTTAATTAAATTAA+GGG 0.383033 3_3:+77045607 None:intergenic
TGTAAACGAAGATATTAGTT+TGG 0.387230 3_3:+77049311 None:intergenic
TATTAATTGTGCAGTGGGGT+TGG 0.389302 3_3:+77050610 None:intergenic
CTTATAATTCCATTCTAGCT+AGG 0.397260 3_3:-77050496 Msa0474200:five_prime_UTR
GATGAAGCCAATCAAATTGC+TGG 0.399411 3_3:+77050404 None:intergenic
ATCATATCCAATTAAAGCTT+GGG 0.401106 3_3:-77045274 Msa0474200:three_prime_UTR
CATCCATTCATTGAGTTAGC+AGG 0.403261 3_3:-77045529 Msa0474200:intron
TCTCTGTGATCCCATCCATT+TGG 0.406675 3_3:-77045391 Msa0474200:three_prime_UTR
GAATCTCTTGCTAAACCAAA+TGG 0.406968 3_3:+77045376 None:intergenic
CAATTTGATTGGCTTCATCT+TGG 0.410727 3_3:-77050400 Msa0474200:CDS
ATCTTCTTCAACCTCTTTGG+TGG 0.411998 3_3:-77050183 Msa0474200:CDS
GATTGGAACCCTAGCTAGAA+TGG 0.413862 3_3:+77050487 None:intergenic
TACACCTCCAGCAATTTGAT+TGG 0.420844 3_3:-77050411 Msa0474200:CDS
GTGATATTGAAATCTTAAAC+TGG 0.423429 3_3:-77045567 Msa0474200:exon
CTTCAACCTCTTTGGTGGAT+CGG 0.423526 3_3:-77050178 Msa0474200:CDS
CTTCAACGTGCCGGTCTTAA+CGG 0.423933 3_3:-77050324 Msa0474200:CDS
GGGTGTCTTCTATGCATTGT+CGG 0.427769 3_3:-77049600 Msa0474200:CDS
ACAGTTGTTACGACTTGGTT+TGG 0.431976 3_3:+77050634 None:intergenic
TTGAAATTGAAAGTTTAAAG+TGG 0.432202 3_3:+77050544 None:intergenic
TCCATTGTTCACTGTTGCCT+TGG 0.432868 3_3:+77045654 None:intergenic
AAGAAATACACGTGGGGAAA+GGG 0.434403 3_3:+77045128 None:intergenic
ACTAATATCTTCGTTTACAT+TGG 0.436105 3_3:-77049307 Msa0474200:CDS
GGTTCTATCATCTGAAACTA+AGG 0.436474 3_3:-77045253 Msa0474200:three_prime_UTR
CCTGTACTGACTGGAGGATC+TGG 0.438220 3_3:+77048215 None:intergenic
ACTGTGCAATACAGTTGTTC+CGG 0.443934 3_3:+77048247 None:intergenic
ACTGGTAATGATGCAGGAAA+TGG 0.447294 3_3:+77049038 None:intergenic
GTTGTTTCCGGCGCTTTCAT+CGG 0.447699 3_3:-77050375 Msa0474200:CDS
TATCATATCCAATTAAAGCT+TGG 0.448724 3_3:-77045275 Msa0474200:three_prime_UTR
GTGGGGAAAGGGAAAGGAAA+AGG 0.451882 3_3:+77045139 None:intergenic
TTACAGAAAATGGGCATGCT+TGG 0.455638 3_3:-77049621 Msa0474200:CDS
ATTTCAGGTGTCGGAGGCTA+TGG 0.456831 3_3:-77050208 Msa0474200:intron
TTGTATTGTGCGCCTCGCTA+TGG 0.458334 3_3:-77049334 Msa0474200:CDS
ATGTCTGAAAGTAAACAAAC+TGG 0.466202 3_3:+77049079 None:intergenic
ATACAACAACTAAACAAAAC+AGG 0.470857 3_3:+77045181 None:intergenic
TACAGAAAATGGGCATGCTT+GGG 0.471819 3_3:-77049620 Msa0474200:CDS
GGTGTCTTCTATGCATTGTC+GGG 0.471983 3_3:-77049599 Msa0474200:CDS
GTGAACAAGGCATAGTAGAT+TGG 0.482283 3_3:+77048480 None:intergenic
ATTTAAACTGGTAATGATGC+AGG 0.482970 3_3:+77049032 None:intergenic
AAAGAAATACACGTGGGGAA+AGG 0.496797 3_3:+77045127 None:intergenic
TTATAATTCCATTCTAGCTA+GGG 0.499028 3_3:-77050495 Msa0474200:five_prime_UTR
GACTGGAGGATCTGGTACTC+TGG 0.501439 3_3:+77048223 None:intergenic
GGCCCTGCTAACTCAATGAA+TGG 0.503144 3_3:+77045526 None:intergenic
GGTGAGAAGTTACAGAAAAT+GGG 0.507262 3_3:-77049630 Msa0474200:CDS
TGTCTTTATTAATTGTGCAG+TGG 0.511754 3_3:+77050604 None:intergenic
CTCTTGCTAAACCAAATGGA+TGG 0.517969 3_3:+77045380 None:intergenic
ATCCATTCATTGAGTTAGCA+GGG 0.520879 3_3:-77045528 Msa0474200:intron
GCGGTGCTTGTTACTCCACT+TGG 0.520959 3_3:-77050012 Msa0474200:CDS
TTGGGACAGTTGTTACGACT+TGG 0.531995 3_3:+77050629 None:intergenic
CCTTGTCTCCAAAAGTATCA+TGG 0.537055 3_3:-77045682 Msa0474200:CDS
CCAGATCCTCCAGTCAGTAC+AGG 0.543909 3_3:-77048215 Msa0474200:intron
AACCTTAAACATAATTGCGC+TGG 0.546072 3_3:+77048440 None:intergenic
CAATTAATAAAGACAGAAAG+AGG 0.547116 3_3:-77050596 Msa0474200:five_prime_UTR
ACCTCTTTGGTGGATCGGCA+TGG 0.547620 3_3:-77050173 Msa0474200:CDS
GTTTAAAGTGGATGAAAATG+TGG 0.549178 3_3:+77050556 None:intergenic
AGCAGGAGTGCCGTTAAGAC+CGG 0.549846 3_3:+77050314 None:intergenic
ATTTCTCTTGTACACAGCCT+CGG 0.549853 3_3:-77049383 Msa0474200:CDS
TGGGGAAAGGGAAAGGAAAA+GGG 0.554246 3_3:+77045140 None:intergenic
GATGAAAGCGCCGGAAACAA+CGG 0.554308 3_3:+77050377 None:intergenic
ATCATCTGAAACTAAGGAGG+TGG 0.561883 3_3:-77045247 Msa0474200:three_prime_UTR
TCTTGCTAAACCAAATGGAT+GGG 0.569603 3_3:+77045381 None:intergenic
AAGTATAAGCAGCATTGCAT+CGG 0.570033 3_3:-77048297 Msa0474200:CDS
GTCATGAGCGTAAAAGCGAT+TGG 0.570641 3_3:-77049135 Msa0474200:CDS
AAAGTATCATGGTATATCCA+AGG 0.578962 3_3:-77045671 Msa0474200:CDS
ATAATCTTAATTAAATTAAG+GGG 0.580054 3_3:+77045608 None:intergenic
GTATGAAGCAGAAATATGGC+TGG 0.583248 3_3:-77045464 Msa0474200:three_prime_UTR
TATTGAAATCTTAAACTGGT+AGG 0.585003 3_3:-77045563 Msa0474200:three_prime_UTR
ATACACGTGGGGAAAGGGAA+AGG 0.587100 3_3:+77045133 None:intergenic
ACTACTGCAAATACAAAACT+GGG 0.588563 3_3:+77045217 None:intergenic
TAGGCCTTACCTGTACTGAC+TGG 0.594862 3_3:+77048206 None:intergenic
CACAGCCTCGGCAATAGCTG+TGG 0.597556 3_3:-77049371 Msa0474200:CDS
ATCTTAATTAAATTAAGGGG+CGG 0.598280 3_3:+77045611 None:intergenic
AGTGGAGTAACAAGCACCGC+GGG 0.601169 3_3:+77050015 None:intergenic
AGTTTGTTTACTTTCAGACA+TGG 0.604205 3_3:-77049077 Msa0474200:CDS
TCCAAGGCAACAGTGAACAA+TGG 0.615061 3_3:-77045655 Msa0474200:CDS
TTTACGATTTCAGGTGTCGG+AGG 0.615243 3_3:-77050214 Msa0474200:intron
AGCATTGCATCGGAGCTATG+TGG 0.620149 3_3:-77048287 Msa0474200:CDS
GCTGGAGCCGATGAAAGCGC+CGG 0.622386 3_3:+77050368 None:intergenic
CAGTGAACAATGGAAACAGA+AGG 0.632620 3_3:-77045645 Msa0474200:CDS
GCCTTACCTGTACTGACTGG+AGG 0.634907 3_3:+77048209 None:intergenic
TATTGTAAAAGATGTGAACA+AGG 0.639922 3_3:+77048467 None:intergenic
ATATTAGTTTGGCCATAGCG+AGG 0.640349 3_3:+77049322 None:intergenic
ACCATGCCGATCCACCAAAG+AGG 0.641294 3_3:+77050172 None:intergenic
ATAATACTCAAAGCACCAAG+TGG 0.642312 3_3:+77049997 None:intergenic
TCTATCATCTGAAACTAAGG+AGG 0.648641 3_3:-77045250 Msa0474200:three_prime_UTR
AGCATACATTTATGCGCCCG+CGG 0.652080 3_3:-77050031 Msa0474200:CDS
GAAGCCAATCAAATTGCTGG+AGG 0.663080 3_3:+77050407 None:intergenic
CACATTGTGTAGCAAGACAG+AGG 0.670035 3_3:-77045340 Msa0474200:three_prime_UTR
TGGAAACAGAAGGAAGACGA+TGG 0.672702 3_3:-77045635 Msa0474200:CDS
GAACGCCACAGCTATTGCCG+AGG 0.679324 3_3:+77049366 None:intergenic
TGCATGGAGCACGATCTCAG+TGG 0.684014 3_3:+77049575 None:intergenic
TCTTTATTAATTGTGCAGTG+GGG 0.707095 3_3:+77050606 None:intergenic
AAGTGGAGTAACAAGCACCG+CGG 0.779673 3_3:+77050014 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAGATAATTAAAGATATTAA+CGG + chr3_3:77047869-77047888 None:intergenic 10.0%
!! ATAATCTTAATTAAATTAAG+GGG + chr3_3:77050159-77050178 None:intergenic 10.0%
!! GATAATCTTAATTAAATTAA+GGG + chr3_3:77050160-77050179 None:intergenic 10.0%
!! TTTAACTATAAGCTAAAATT+TGG + chr3_3:77045933-77045952 None:intergenic 15.0%
!! TATATGTTAGTTAAAAAGTA+TGG - chr3_3:77047973-77047992 Msa0474200:intron 15.0%
!!! ATATGATATTTGAAGTATTT+TGG + chr3_3:77048404-77048423 None:intergenic 15.0%
!! AAAAGCAAAAAAATATGTAT+GGG + chr3_3:77048803-77048822 None:intergenic 15.0%
!! AAAAAGCAAAAAAATATGTA+TGG + chr3_3:77048804-77048823 None:intergenic 15.0%
!!! ATTTGTTATAAACAAAGATT+AGG - chr3_3:77048833-77048852 Msa0474200:intron 15.0%
!! TTAAAAACTTCTTCAAAAAA+AGG + chr3_3:77049055-77049074 None:intergenic 15.0%
!! AATCAAATATTGCTATAATA+AGG + chr3_3:77049085-77049104 None:intergenic 15.0%
!! AAAGAAAATAAGTCTTTAAT+CGG + chr3_3:77049308-77049327 None:intergenic 15.0%
!!! ATTTTTCAATTAAGATAACA+AGG - chr3_3:77049552-77049571 Msa0474200:CDS 15.0%
!!! TTTTTCAATTAAGATAACAA+GGG - chr3_3:77049553-77049572 Msa0474200:CDS 15.0%
!! GGATAATCTTAATTAAATTA+AGG + chr3_3:77050161-77050180 None:intergenic 15.0%
!! TTGAAATTGAAAGTTTAAAG+TGG + chr3_3:77045223-77045242 None:intergenic 20.0%
!! TTAGTTAGTTAGTTACATAA+CGG + chr3_3:77045529-77045548 None:intergenic 20.0%
!!! TGAATTATGATTTTACTCTT+TGG - chr3_3:77046341-77046360 Msa0474200:intron 20.0%
!! CATATTAAGGTAATTTAAAC+TGG + chr3_3:77046747-77046766 None:intergenic 20.0%
!! CAGTTTAAATTACCTTAATA+TGG - chr3_3:77046745-77046764 Msa0474200:intron 20.0%
!!! TGTTAATATATTTTTCGGTA+TGG - chr3_3:77046791-77046810 Msa0474200:intron 20.0%
!! ACAATTTGCAATTCAAAATT+CGG + chr3_3:77047122-77047141 None:intergenic 20.0%
!!! AGGTTGGTATTTTATTTTAT+TGG - chr3_3:77047342-77047361 Msa0474200:intron 20.0%
!! AAATGGCACATATAATTATA+AGG + chr3_3:77047620-77047639 None:intergenic 20.0%
!! AAATACAGTACTGTATTAAA+AGG - chr3_3:77048209-77048228 Msa0474200:intron 20.0%
!! AATACAGTACTGTATTAAAA+GGG - chr3_3:77048210-77048229 Msa0474200:intron 20.0%
!! TTAAAAGGGAGAAATTTAAT+CGG - chr3_3:77048224-77048243 Msa0474200:CDS 20.0%
!! TGATGAAAATGATTATATCA+TGG - chr3_3:77048254-77048273 Msa0474200:CDS 20.0%
!! AAAATCAAACATAACTCTTA+GGG - chr3_3:77048496-77048515 Msa0474200:CDS 20.0%
!! AAAAGAACCTAAATATTACA+GGG + chr3_3:77048759-77048778 None:intergenic 20.0%
!! TAAAAGAACCTAAATATTAC+AGG + chr3_3:77048760-77048779 None:intergenic 20.0%
!!! AAAAAAAGTATGTATCGTAA+GGG + chr3_3:77049756-77049775 None:intergenic 20.0%
!!! TAAAAAAAGTATGTATCGTA+AGG + chr3_3:77049757-77049776 None:intergenic 20.0%
! CAATTAATAAAGACAGAAAG+AGG - chr3_3:77045168-77045187 Msa0474200:three_prime_UTR 25.0%
!! TTATAATTCCATTCTAGCTA+GGG - chr3_3:77045269-77045288 Msa0474200:three_prime_UTR 25.0%
!!! AGAAGAATTTGATTTTGGAT+TGG + chr3_3:77045297-77045316 None:intergenic 25.0%
!!! GATGAAGAAGAATTTGATTT+TGG + chr3_3:77045302-77045321 None:intergenic 25.0%
!!! TTTTTTCTTAATGATGAAGC+TGG + chr3_3:77045417-77045436 None:intergenic 25.0%
! AGCTTCATCATTAAGAAAAA+AGG - chr3_3:77045416-77045435 Msa0474200:three_prime_UTR 25.0%
! AGATAAAGAATAGAGTTGTT+AGG + chr3_3:77045635-77045654 None:intergenic 25.0%
!!! AATTTTGACTCATCCAAAAT+TGG - chr3_3:77045971-77045990 Msa0474200:intron 25.0%
! TCAAAGCTTAAAAAGCAAAA+GGG + chr3_3:77046035-77046054 None:intergenic 25.0%
! TTCAAAGCTTAAAAAGCAAA+AGG + chr3_3:77046036-77046055 None:intergenic 25.0%
!! TGTATTTTCTCATTTCATGT+TGG - chr3_3:77046112-77046131 Msa0474200:intron 25.0%
!! GTATTTTCTCATTTCATGTT+GGG - chr3_3:77046113-77046132 Msa0474200:intron 25.0%
! TGTAAACGAAGATATTAGTT+TGG + chr3_3:77046456-77046475 None:intergenic 25.0%
! ACTAATATCTTCGTTTACAT+TGG - chr3_3:77046457-77046476 Msa0474200:intron 25.0%
! GTTGAGAAATGTAAATCAAA+AGG + chr3_3:77046581-77046600 None:intergenic 25.0%
!! AATATCTTGTTTCTCATTTC+AGG - chr3_3:77046607-77046626 Msa0474200:intron 25.0%
! GCTATTAAACTTACATTAGA+TGG - chr3_3:77046656-77046675 Msa0474200:intron 25.0%
! TCATAATCTTATATGGTTCA+TGG - chr3_3:77046885-77046904 Msa0474200:intron 25.0%
! AACTCATGTTGAAAATACTA+AGG + chr3_3:77046929-77046948 None:intergenic 25.0%
! ATCATTACTTGGATGTTATT+TGG + chr3_3:77047047-77047066 None:intergenic 25.0%
! AATAACATCCAAGTAATGAT+TGG - chr3_3:77047047-77047066 Msa0474200:intron 25.0%
! CAATTTGCAATTCAAAATTC+GGG + chr3_3:77047121-77047140 None:intergenic 25.0%
! TATTGTAAAAGATGTGAACA+AGG + chr3_3:77047300-77047319 None:intergenic 25.0%
! CAAAGTAAAAAATGCATCTT+AGG - chr3_3:77047367-77047386 Msa0474200:intron 25.0%
! TAAAAGGGAGAAATTTAATC+GGG - chr3_3:77048225-77048244 Msa0474200:CDS 25.0%
! CAAAATCAAACATAACTCTT+AGG - chr3_3:77048495-77048514 Msa0474200:CDS 25.0%
! ATAGTTCCAATTTAATTGGA+AGG - chr3_3:77048698-77048717 Msa0474200:intron 25.0%
! TTGTAACCTTCCAATTAAAT+TGG + chr3_3:77048707-77048726 None:intergenic 25.0%
! ATATTGCTATAATAAGGACT+AGG + chr3_3:77049079-77049098 None:intergenic 25.0%
! TATAGCATAAGCATATTAAG+CGG + chr3_3:77049112-77049131 None:intergenic 25.0%
! GGAAATTACTACTGTAATAT+AGG - chr3_3:77049164-77049183 Msa0474200:intron 25.0%
! AGCTTATCAAAAAACACTTT+AGG - chr3_3:77049619-77049638 Msa0474200:CDS 25.0%
! ATAAACTTGTGAGAAAATGA+TGG - chr3_3:77049658-77049677 Msa0474200:CDS 25.0%
! AGATTTCGAACAAAAATGTT+TGG - chr3_3:77049870-77049889 Msa0474200:intron 25.0%
!! GGTTTCTTAGTGTAATATTT+TGG - chr3_3:77049929-77049948 Msa0474200:intron 25.0%
!!! TTCTTAGTGTAATATTTTGG+TGG - chr3_3:77049932-77049951 Msa0474200:intron 25.0%
! ATCTTAATTAAATTAAGGGG+CGG + chr3_3:77050156-77050175 None:intergenic 25.0%
! GTGATATTGAAATCTTAAAC+TGG - chr3_3:77050197-77050216 Msa0474200:CDS 25.0%
! TATTGAAATCTTAAACTGGT+AGG - chr3_3:77050201-77050220 Msa0474200:CDS 25.0%
! TATCATATCCAATTAAAGCT+TGG - chr3_3:77050489-77050508 Msa0474200:five_prime_UTR 25.0%
! ATCATATCCAATTAAAGCTT+GGG - chr3_3:77050490-77050509 Msa0474200:five_prime_UTR 25.0%
! ATACAACAACTAAACAAAAC+AGG + chr3_3:77050586-77050605 None:intergenic 25.0%
TCTTTATTAATTGTGCAGTG+GGG + chr3_3:77045161-77045180 None:intergenic 30.0%
GTCTTTATTAATTGTGCAGT+GGG + chr3_3:77045162-77045181 None:intergenic 30.0%
TGTCTTTATTAATTGTGCAG+TGG + chr3_3:77045163-77045182 None:intergenic 30.0%
! GTTTAAAGTGGATGAAAATG+TGG + chr3_3:77045211-77045230 None:intergenic 30.0%
! CTTATAATTCCATTCTAGCT+AGG - chr3_3:77045268-77045287 Msa0474200:three_prime_UTR 30.0%
CTAACTAACTTTACGATTTC+AGG - chr3_3:77045541-77045560 Msa0474200:three_prime_UTR 30.0%
AAGAATAGAGTTGTTAGGTT+AGG + chr3_3:77045630-77045649 None:intergenic 30.0%
! GTGCTTTGAGTATTATTGTT+AGG - chr3_3:77045774-77045793 Msa0474200:intron 30.0%
!! TGTATGTTTGGTTCCAATTT+TGG + chr3_3:77045987-77046006 None:intergenic 30.0%
AAAGCTTAAAAAGCAAAAGG+GGG + chr3_3:77046033-77046052 None:intergenic 30.0%
CAAAGCTTAAAAAGCAAAAG+GGG + chr3_3:77046034-77046053 None:intergenic 30.0%
!!! CTTTTGTTTGTTTTTGCTTG+TGG - chr3_3:77046071-77046090 Msa0474200:intron 30.0%
!!! TTTGTTTTTGCTTGTGGAAA+TGG - chr3_3:77046077-77046096 Msa0474200:intron 30.0%
! AGAAGTAAGAGACTTTTCTT+GGG + chr3_3:77046216-77046235 None:intergenic 30.0%
TTACTTCTGTGCTAGAAATA+TGG - chr3_3:77046228-77046247 Msa0474200:intron 30.0%
ATTGGAATATGCTCCATAAT+TGG - chr3_3:77046475-77046494 Msa0474200:intron 30.0%
TACAGTCAATGATCCAATTA+TGG + chr3_3:77046491-77046510 None:intergenic 30.0%
ATGATAAAGGTGAATTGGAT+TGG + chr3_3:77046524-77046543 None:intergenic 30.0%
CTAGAATGATAAAGGTGAAT+TGG + chr3_3:77046529-77046548 None:intergenic 30.0%
CTGTTGACAAAATTCAATAG+TGG - chr3_3:77046549-77046568 Msa0474200:intron 30.0%
TTGACAAAATTCAATAGTGG+AGG - chr3_3:77046552-77046571 Msa0474200:intron 30.0%
ATGTCTGAAAGTAAACAAAC+TGG + chr3_3:77046688-77046707 None:intergenic 30.0%
! AGTTTGTTTACTTTCAGACA+TGG - chr3_3:77046687-77046706 Msa0474200:intron 30.0%
! TCAGACATGGATTTTTACAA+TGG - chr3_3:77046700-77046719 Msa0474200:intron 30.0%
! ATTTAAACTGGTAATGATGC+AGG + chr3_3:77046735-77046754 None:intergenic 30.0%
!!! TCTAGTACAAGAAAGCATTT+TGG - chr3_3:77046847-77046866 Msa0474200:intron 30.0%
GGGTGATTCATAATCTTATA+TGG - chr3_3:77046878-77046897 Msa0474200:intron 30.0%
GTTCAAGATTATATCAGTTC+TGG + chr3_3:77047090-77047109 None:intergenic 30.0%
!! TAACTTGCTTGTTAAGTTTC+TGG - chr3_3:77047166-77047185 Msa0474200:intron 30.0%
! AACTTGCTTGTTAAGTTTCT+GGG - chr3_3:77047167-77047186 Msa0474200:intron 30.0%
TATAAGCAATATTCTGACTG+AGG + chr3_3:77047696-77047715 None:intergenic 30.0%
!! ATGTGACATGCATTTTGAAA+CGG - chr3_3:77048032-77048051 Msa0474200:intron 30.0%
AAAAGGGAGAAATTTAATCG+GGG - chr3_3:77048226-77048245 Msa0474200:CDS 30.0%
GGGAATAGTTCCAATTTAAT+TGG - chr3_3:77048694-77048713 Msa0474200:intron 30.0%
ACTTCTTCAAAAAAAGGACT+AGG + chr3_3:77049049-77049068 None:intergenic 30.0%
ATAGCATAAGCATATTAAGC+GGG + chr3_3:77049111-77049130 None:intergenic 30.0%
!! TGCTATAGTTGATAGATCTA+TGG - chr3_3:77049125-77049144 Msa0474200:CDS 30.0%
!! GCTATAGTTGATAGATCTAT+GGG - chr3_3:77049126-77049145 Msa0474200:CDS 30.0%
!! CTATAGTTGATAGATCTATG+GGG - chr3_3:77049127-77049146 Msa0474200:CDS 30.0%
TATGATTCACTTTCTAGACA+TGG - chr3_3:77049336-77049355 Msa0474200:CDS 30.0%
ATGATTCACTTTCTAGACAT+GGG - chr3_3:77049337-77049356 Msa0474200:CDS 30.0%
CTCTGTTTGGTAAAAAATAG+CGG - chr3_3:77049360-77049379 Msa0474200:CDS 30.0%
! ACTAATAAGCTAGCTTAAAG+CGG - chr3_3:77049386-77049405 Msa0474200:CDS 30.0%
TAGTATAAGCTAGCTGATAA+CGG - chr3_3:77049425-77049444 Msa0474200:intron 30.0%
AAGCTAGCTAATTGAATTTG+TGG - chr3_3:77049450-77049469 Msa0474200:intron 30.0%
CTAATTGAATTTGTGGTGTT+TGG - chr3_3:77049457-77049476 Msa0474200:intron 30.0%
ATGACTAAAAAAGACATGTC+TGG + chr3_3:77049687-77049706 None:intergenic 30.0%
! GCAAATTAATTTGAAGCTAC+AGG + chr3_3:77049800-77049819 None:intergenic 30.0%
ATGCATATAAACCTACATCA+TGG - chr3_3:77049824-77049843 Msa0474200:intron 30.0%
!! TGTATGTAACTTAAGTTGAG+AGG - chr3_3:77049961-77049980 Msa0474200:intron 30.0%
! GCACTGATGATAAATGATTT+AGG + chr3_3:77050048-77050067 None:intergenic 30.0%
! TGGATATACCATGATACTTT+TGG + chr3_3:77050093-77050112 None:intergenic 30.0%
! AAAGTATCATGGTATATCCA+AGG - chr3_3:77050093-77050112 Msa0474200:intron 30.0%
CTCTTGACAATGAGAAAATA+TGG + chr3_3:77050262-77050281 None:intergenic 30.0%
TACAGTATGAAGCAGAAATA+TGG - chr3_3:77050296-77050315 Msa0474200:intron 30.0%
AAGAAATGTAGCTGTGTTAT+AGG - chr3_3:77050345-77050364 Msa0474200:CDS 30.0%
AGAAATGTAGCTGTGTTATA+GGG - chr3_3:77050346-77050365 Msa0474200:CDS 30.0%
ACTACTGCAAATACAAAACT+GGG + chr3_3:77050550-77050569 None:intergenic 30.0%
TACTACTGCAAATACAAAAC+TGG + chr3_3:77050551-77050570 None:intergenic 30.0%
!! CAATTTGATTGGCTTCATCT+TGG - chr3_3:77045364-77045383 Msa0474200:three_prime_UTR 35.0%
AGTAACAGAGAGGTAAAAGA+GGG + chr3_3:77045502-77045521 None:intergenic 35.0%
! AACTTTACGATTTCAGGTGT+CGG - chr3_3:77045547-77045566 Msa0474200:three_prime_UTR 35.0%
GTTATCTTCTTCAACCTCTT+TGG - chr3_3:77045578-77045597 Msa0474200:exon 35.0%
!! AGCTTTATTGCAGTGATTGT+TGG - chr3_3:77045692-77045711 Msa0474200:CDS 35.0%
! ATAATACTCAAAGCACCAAG+TGG + chr3_3:77045770-77045789 None:intergenic 35.0%
GTTAGGTAACCAATGTTGTT+TGG - chr3_3:77045791-77045810 Msa0474200:intron 35.0%
CAGTGAAAACCAAACAACAT+TGG + chr3_3:77045803-77045822 None:intergenic 35.0%
ATTGGAACCAAACATACACT+TGG - chr3_3:77045989-77046008 Msa0474200:intron 35.0%
GGTGAGAAGTTACAGAAAAT+GGG - chr3_3:77046134-77046153 Msa0474200:intron 35.0%
! GAAGTAAGAGACTTTTCTTG+GGG + chr3_3:77046215-77046234 None:intergenic 35.0%
! CAGAAGTAAGAGACTTTTCT+TGG + chr3_3:77046217-77046236 None:intergenic 35.0%
! TGTGCTAGAAATATGGCTTT+TGG - chr3_3:77046235-77046254 Msa0474200:intron 35.0%
GTCAACAGCTAGAATGATAA+AGG + chr3_3:77046537-77046556 None:intergenic 35.0%
! ACAAAATTCAATAGTGGAGG+TGG - chr3_3:77046555-77046574 Msa0474200:intron 35.0%
GAGTGATACTGACCATATTA+AGG + chr3_3:77046760-77046779 None:intergenic 35.0%
!!! AAAGCATTTTGGTTTGCAGT+GGG - chr3_3:77046858-77046877 Msa0474200:intron 35.0%
! CAAGATTATATCAGTTCTGG+TGG + chr3_3:77047087-77047106 None:intergenic 35.0%
CAATTCAAAATTCGGGAATC+AGG + chr3_3:77047114-77047133 None:intergenic 35.0%
AGCAAGTTATGACAACTGAA+CGG + chr3_3:77047155-77047174 None:intergenic 35.0%
AATGGTGATAGACTCTTGTA+TGG - chr3_3:77047216-77047235 Msa0474200:intron 35.0%
AACCTTAAACATAATTGCGC+TGG + chr3_3:77047327-77047346 None:intergenic 35.0%
! AGCGCAATTATGTTTAAGGT+TGG - chr3_3:77047326-77047345 Msa0474200:intron 35.0%
! GCATCTTAGGAGTAATCTTT+TGG - chr3_3:77047380-77047399 Msa0474200:intron 35.0%
! CTAAATGAGAAGAGTACAAC+AGG + chr3_3:77047433-77047452 None:intergenic 35.0%
CTGTTGTACTCTTCTCATTT+AGG - chr3_3:77047431-77047450 Msa0474200:intron 35.0%
! CTTCTCATTTAGGACTATTC+TGG - chr3_3:77047441-77047460 Msa0474200:intron 35.0%
AAGTATAAGCAGCATTGCAT+CGG - chr3_3:77047467-77047486 Msa0474200:intron 35.0%
! GGTTTCATCACTGTTTTATC+CGG - chr3_3:77047498-77047517 Msa0474200:intron 35.0%
TAAGGACTTGCATCATCAAA+GGG + chr3_3:77047602-77047621 None:intergenic 35.0%
ATAAGGACTTGCATCATCAA+AGG + chr3_3:77047603-77047622 None:intergenic 35.0%
TTGGTTGCAGCTCAATAAAA+TGG + chr3_3:77047637-77047656 None:intergenic 35.0%
! AGCATCAAATGTTTGTTGCA+TGG + chr3_3:77047760-77047779 None:intergenic 35.0%
!! GACATGTATTTTGAATCGGA+GGG + chr3_3:77047807-77047826 None:intergenic 35.0%
!! CTGCGACATGTATTTTGAAT+CGG + chr3_3:77047811-77047830 None:intergenic 35.0%
AACGGAGGGAGTAAATTTAA+AGG - chr3_3:77048050-77048069 Msa0474200:intron 35.0%
ACGGAGGGAGTAAATTTAAA+GGG - chr3_3:77048051-77048070 Msa0474200:intron 35.0%
AGTAAATTTAAAGGGGGTCT+TGG - chr3_3:77048059-77048078 Msa0474200:intron 35.0%
AATGATATAAAGCTCCGTCA+TGG + chr3_3:77048167-77048186 None:intergenic 35.0%
!! TGTATCGTTCGATCACTTTT+TGG - chr3_3:77048300-77048319 Msa0474200:CDS 35.0%
ACTGTAGAGAGATTAAACAG+AGG - chr3_3:77048629-77048648 Msa0474200:intron 35.0%
AGATTAAACAGAGGTAGTGT+GGG - chr3_3:77048638-77048657 Msa0474200:intron 35.0%
AACAAAGATTAGGCTTCTGA+TGG - chr3_3:77048843-77048862 Msa0474200:intron 35.0%
TTGGTACAACGACAAGTATT+CGG + chr3_3:77048880-77048899 None:intergenic 35.0%
ACTAAGTAGCCTACTTTCTT+TGG + chr3_3:77048899-77048918 None:intergenic 35.0%
GAACATTCATCAATCAGTAC+AGG + chr3_3:77048954-77048973 None:intergenic 35.0%
! ATGTTCCTTTTATGTCGACA+AGG - chr3_3:77048968-77048987 Msa0474200:intron 35.0%
! TGTTCCTTTTATGTCGACAA+GGG - chr3_3:77048969-77048988 Msa0474200:intron 35.0%
TAAAGTGAACCAAGCTTTCT+AGG - chr3_3:77049210-77049229 Msa0474200:intron 35.0%
TTAACTCAACCTAGAAAGCT+TGG + chr3_3:77049222-77049241 None:intergenic 35.0%
GTCTTTAATCGGAAAAGTGA+TGG + chr3_3:77049297-77049316 None:intergenic 35.0%
AGAAAGTGAATCATAGAAGC+TGG + chr3_3:77049331-77049350 None:intergenic 35.0%
TAAAGCGGATGAACTTATAG+CGG - chr3_3:77049401-77049420 Msa0474200:intron 35.0%
! TTCTCACAGTTTGTTCAGAA+AGG + chr3_3:77050021-77050040 None:intergenic 35.0%
!! CATGATACTTTTGGAGACAA+GGG + chr3_3:77050084-77050103 None:intergenic 35.0%
ATCACTTGAAATGATCTTGC+TGG + chr3_3:77050182-77050201 None:intergenic 35.0%
ATCCATTCATTGAGTTAGCA+GGG - chr3_3:77050236-77050255 Msa0474200:intron 35.0%
TCTCATTGTCAAGAGCAATT+CGG - chr3_3:77050267-77050286 Msa0474200:intron 35.0%
TCTTGCTAAACCAAATGGAT+GGG + chr3_3:77050386-77050405 None:intergenic 35.0%
GAATCTCTTGCTAAACCAAA+TGG + chr3_3:77050391-77050410 None:intergenic 35.0%
! GATAGAACCCAAGCTTTAAT+TGG + chr3_3:77050500-77050519 None:intergenic 35.0%
! GGTTCTATCATCTGAAACTA+AGG - chr3_3:77050511-77050530 Msa0474200:five_prime_UTR 35.0%
! TCTATCATCTGAAACTAAGG+AGG - chr3_3:77050514-77050533 Msa0474200:five_prime_UTR 35.0%
!! ACAGTTGTTACGACTTGGTT+TGG + chr3_3:77045133-77045152 None:intergenic 40.0%
ATTAATTGTGCAGTGGGGTT+GGG + chr3_3:77045156-77045175 None:intergenic 40.0%
TATTAATTGTGCAGTGGGGT+TGG + chr3_3:77045157-77045176 None:intergenic 40.0%
TACACCTCCAGCAATTTGAT+TGG - chr3_3:77045353-77045372 Msa0474200:three_prime_UTR 40.0%
GATGAAGCCAATCAAATTGC+TGG + chr3_3:77045363-77045382 None:intergenic 40.0%
AAAAAAGGTCTTCAACGTGC+CGG - chr3_3:77045431-77045450 Msa0474200:three_prime_UTR 40.0%
! AAGTGAGTTGACTTACTAGC+AGG + chr3_3:77045470-77045489 None:intergenic 40.0%
CAGTAACAGAGAGGTAAAAG+AGG + chr3_3:77045503-77045522 None:intergenic 40.0%
TAACGGTAACAGTAACAGAG+AGG + chr3_3:77045512-77045531 None:intergenic 40.0%
ATCTTCTTCAACCTCTTTGG+TGG - chr3_3:77045581-77045600 Msa0474200:exon 40.0%
CGAGAATCCAAGTGTATGTT+TGG + chr3_3:77045999-77046018 None:intergenic 40.0%
GGGTGAGAAGTTACAGAAAA+TGG - chr3_3:77046133-77046152 Msa0474200:intron 40.0%
TTACAGAAAATGGGCATGCT+TGG - chr3_3:77046143-77046162 Msa0474200:intron 40.0%
TACAGAAAATGGGCATGCTT+GGG - chr3_3:77046144-77046163 Msa0474200:intron 40.0%
ATTTCTCTTGTACACAGCCT+CGG - chr3_3:77046381-77046400 Msa0474200:intron 40.0%
! ATATTAGTTTGGCCATAGCG+AGG + chr3_3:77046445-77046464 None:intergenic 40.0%
! ACTGGTAATGATGCAGGAAA+TGG + chr3_3:77046729-77046748 None:intergenic 40.0%
!!! GAAAGCATTTTGGTTTGCAG+TGG - chr3_3:77046857-77046876 Msa0474200:intron 40.0%
TAAGGCAGTAGCTAGAAAAG+TGG + chr3_3:77046911-77046930 None:intergenic 40.0%
! TTGGATGTTATTTGGACGAG+AGG + chr3_3:77047039-77047058 None:intergenic 40.0%
CAACTGAGCCAATCATTACT+TGG + chr3_3:77047058-77047077 None:intergenic 40.0%
! TAATGATTGGCTCAGTTGAC+TGG - chr3_3:77047060-77047079 Msa0474200:intron 40.0%
! TTTCTGGGAATCTCTGATCT+GGG - chr3_3:77047182-77047201 Msa0474200:intron 40.0%
GTGATAGACTCTTGTATGGT+TGG - chr3_3:77047220-77047239 Msa0474200:intron 40.0%
GTGAACAAGGCATAGTAGAT+TGG + chr3_3:77047287-77047306 None:intergenic 40.0%
AGCCAGCGCAATTATGTTTA+AGG - chr3_3:77047322-77047341 Msa0474200:intron 40.0%
ACTGTGCAATACAGTTGTTC+CGG + chr3_3:77047520-77047539 None:intergenic 40.0%
!! CGACATGTATTTTGAATCGG+AGG + chr3_3:77047808-77047827 None:intergenic 40.0%
TAACGGTCAAAGTTGTGCAT+TGG + chr3_3:77047852-77047871 None:intergenic 40.0%
!!! TGACATGCATTTTGAAACGG+AGG - chr3_3:77048035-77048054 Msa0474200:intron 40.0%
!!! GACATGCATTTTGAAACGGA+GGG - chr3_3:77048036-77048055 Msa0474200:intron 40.0%
CGGAGGGAGTAAATTTAAAG+GGG - chr3_3:77048052-77048071 Msa0474200:intron 40.0%
GGAGGGAGTAAATTTAAAGG+GGG - chr3_3:77048053-77048072 Msa0474200:intron 40.0%
TATGTGACCTCGTAGTTACA+TGG + chr3_3:77048105-77048124 None:intergenic 40.0%
AACTACGAGGTCACATATAC+CGG - chr3_3:77048108-77048127 Msa0474200:intron 40.0%
CACATATACCGGTCTACAAT+TGG - chr3_3:77048119-77048138 Msa0474200:intron 40.0%
TCTCTGCTCATTCACTAATG+GGG + chr3_3:77048527-77048546 None:intergenic 40.0%
CTCTCTGCTCATTCACTAAT+GGG + chr3_3:77048528-77048547 None:intergenic 40.0%
TCTCTCTGCTCATTCACTAA+TGG + chr3_3:77048529-77048548 None:intergenic 40.0%
AAGAGCAAAGAAACTGAGCA+TGG - chr3_3:77048577-77048596 Msa0474200:intron 40.0%
GAGATTAAACAGAGGTAGTG+TGG - chr3_3:77048637-77048656 Msa0474200:intron 40.0%
CAAAACCCTAGAACAGAAAG+CGG - chr3_3:77048729-77048748 Msa0474200:intron 40.0%
CGGTTCACCCTGTAATATTT+AGG - chr3_3:77048749-77048768 Msa0474200:intron 40.0%
ACAAGTATTCGGTACAAGAG+TGG + chr3_3:77048869-77048888 None:intergenic 40.0%
GTCGTTGTACCAAAGAAAGT+AGG - chr3_3:77048887-77048906 Msa0474200:intron 40.0%
AGATCCCTTGTCGACATAAA+AGG + chr3_3:77048976-77048995 None:intergenic 40.0%
!! TATGGGGTTTAGTTCTTCAC+AGG - chr3_3:77049143-77049162 Msa0474200:intron 40.0%
AAAGCGGATGAACTTATAGC+GGG - chr3_3:77049402-77049421 Msa0474200:intron 40.0%
GTGGTGTTTGGTCAAATTAG+TGG - chr3_3:77049469-77049488 Msa0474200:intron 40.0%
ATGTATCGTAAGGGTCTGTT+TGG + chr3_3:77049747-77049766 None:intergenic 40.0%
TCTGACATTCTCCATGATGT+AGG + chr3_3:77049838-77049857 None:intergenic 40.0%
TCAACATTCATGACACACTG+TGG - chr3_3:77049908-77049927 Msa0474200:intron 40.0%
! CACAGTTTGTTCAGAAAGGA+AGG + chr3_3:77050017-77050036 None:intergenic 40.0%
!! CCATGATACTTTTGGAGACA+AGG + chr3_3:77050085-77050104 None:intergenic 40.0%
!! CCTTGTCTCCAAAAGTATCA+TGG - chr3_3:77050082-77050101 Msa0474200:intron 40.0%
CAGTGAACAATGGAAACAGA+AGG - chr3_3:77050119-77050138 Msa0474200:intron 40.0%
CATCCATTCATTGAGTTAGC+AGG - chr3_3:77050235-77050254 Msa0474200:intron 40.0%
GTATGAAGCAGAAATATGGC+TGG - chr3_3:77050300-77050319 Msa0474200:intron 40.0%
CTCTTGCTAAACCAAATGGA+TGG + chr3_3:77050387-77050406 None:intergenic 40.0%
! ATCATCTGAAACTAAGGAGG+TGG - chr3_3:77050517-77050536 Msa0474200:five_prime_UTR 40.0%
AAGAAATACACGTGGGGAAA+GGG + chr3_3:77050639-77050658 None:intergenic 40.0%
AAAGAAATACACGTGGGGAA+AGG + chr3_3:77050640-77050659 None:intergenic 40.0%
GGCAAAAAGAAATACACGTG+GGG + chr3_3:77050645-77050664 None:intergenic 40.0%
GGGCAAAAAGAAATACACGT+GGG + chr3_3:77050646-77050665 None:intergenic 40.0%
TTGGGACAGTTGTTACGACT+TGG + chr3_3:77045138-77045157 None:intergenic 45.0%
GATTGGAACCCTAGCTAGAA+TGG + chr3_3:77045280-77045299 None:intergenic 45.0%
GAAGCCAATCAAATTGCTGG+AGG + chr3_3:77045360-77045379 None:intergenic 45.0%
! TTCATCTTGGCCGTTGTTTC+CGG - chr3_3:77045377-77045396 Msa0474200:three_prime_UTR 45.0%
!! TTTACGATTTCAGGTGTCGG+AGG - chr3_3:77045550-77045569 Msa0474200:three_prime_UTR 45.0%
! CTTCAACCTCTTTGGTGGAT+CGG - chr3_3:77045586-77045605 Msa0474200:CDS 45.0%
GGGTGTCTTCTATGCATTGT+CGG - chr3_3:77046164-77046183 Msa0474200:intron 45.0%
GGTGTCTTCTATGCATTGTC+GGG - chr3_3:77046165-77046184 Msa0474200:intron 45.0%
GCTGTGTACAAGAGAAATGC+TGG + chr3_3:77046379-77046398 None:intergenic 45.0%
GTCATGAGCGTAAAAGCGAT+TGG - chr3_3:77046629-77046648 Msa0474200:intron 45.0%
GTTATGACAACTGAACGGCA+TGG + chr3_3:77047150-77047169 None:intergenic 45.0%
! GTTTCTGGGAATCTCTGATC+TGG - chr3_3:77047181-77047200 Msa0474200:intron 45.0%
ATCTCTGATCTGGGTATCTG+TGG - chr3_3:77047191-77047210 Msa0474200:intron 45.0%
ATCTGGGTATCTGTGGTGAA+TGG - chr3_3:77047198-77047217 Msa0474200:intron 45.0%
AGGTAAGGCCTAATGCACTT+CGG - chr3_3:77047569-77047588 Msa0474200:intron 45.0%
TGACTGAGGACTAAGAGATG+GGG + chr3_3:77047682-77047701 None:intergenic 45.0%
CTGACTGAGGACTAAGAGAT+GGG + chr3_3:77047683-77047702 None:intergenic 45.0%
TCTGACTGAGGACTAAGAGA+TGG + chr3_3:77047684-77047703 None:intergenic 45.0%
GTTGCTACCATGTAACTACG+AGG - chr3_3:77048095-77048114 Msa0474200:intron 45.0%
TATAAAGCTCCGTCATGGTG+TGG + chr3_3:77048162-77048181 None:intergenic 45.0%
TTAAACAGAGGTAGTGTGGG+AGG - chr3_3:77048641-77048660 Msa0474200:intron 45.0%
GTGAACCGCTTTCTGTTCTA+GGG + chr3_3:77048737-77048756 None:intergenic 45.0%
TTCTAGACATGGGCTCTGTT+TGG - chr3_3:77049347-77049366 Msa0474200:CDS 45.0%
TGGAAACAGAAGGAAGACGA+TGG - chr3_3:77050129-77050148 Msa0474200:intron 45.0%
TCTCTGTGATCCCATCCATT+TGG - chr3_3:77050373-77050392 Msa0474200:CDS 45.0%
CACATTGTGTAGCAAGACAG+AGG - chr3_3:77050424-77050443 Msa0474200:exon 45.0%
TGGGGAAAGGGAAAGGAAAA+GGG + chr3_3:77050627-77050646 None:intergenic 45.0%
GGGGCAAAAAGAAATACACG+TGG + chr3_3:77050647-77050666 None:intergenic 45.0%
!!! TTTTATGTTAATATATTTTT+CGG - chr3_3:77046786-77046805 Msa0474200:intron 5.0%
!!! TATTAAATTTTAATAGTTTT+TGG + chr3_3:77047656-77047675 None:intergenic 5.0%
!! GATGAAAGCGCCGGAAACAA+CGG + chr3_3:77045390-77045409 None:intergenic 50.0%
! GTTGTTTCCGGCGCTTTCAT+CGG - chr3_3:77045389-77045408 Msa0474200:three_prime_UTR 50.0%
! CTTCAACGTGCCGGTCTTAA+CGG - chr3_3:77045440-77045459 Msa0474200:three_prime_UTR 50.0%
!! ATTTCAGGTGTCGGAGGCTA+TGG - chr3_3:77045556-77045575 Msa0474200:three_prime_UTR 50.0%
AGCATACATTTATGCGCCCG+CGG - chr3_3:77045733-77045752 Msa0474200:intron 50.0%
! AAGTGGAGTAACAAGCACCG+CGG + chr3_3:77045753-77045772 None:intergenic 50.0%
! GAGACTTTTCTTGGGGTGCA+TGG + chr3_3:77046208-77046227 None:intergenic 50.0%
!! TGGCTTTTGGCTGTTCAACC+AGG - chr3_3:77046248-77046267 Msa0474200:intron 50.0%
TTGTATTGTGCGCCTCGCTA+TGG - chr3_3:77046430-77046449 Msa0474200:intron 50.0%
TCTTGTATGGTTGGCATCGC+AGG - chr3_3:77047229-77047248 Msa0474200:intron 50.0%
AGCATTGCATCGGAGCTATG+TGG - chr3_3:77047477-77047496 Msa0474200:intron 50.0%
TCCTCCAGTCAGTACAGGTA+AGG - chr3_3:77047554-77047573 Msa0474200:intron 50.0%
! TAGGCCTTACCTGTACTGAC+TGG + chr3_3:77047561-77047580 None:intergenic 50.0%
GGTAAGGCCTAATGCACTTC+GGG - chr3_3:77047570-77047589 Msa0474200:intron 50.0%
GTAAGGCCTAATGCACTTCG+GGG - chr3_3:77047571-77047590 Msa0474200:intron 50.0%
! GTGCATTGGCATGTGTGAAG+TGG + chr3_3:77047838-77047857 None:intergenic 50.0%
GGTTCGGACCAATTGTAGAC+CGG + chr3_3:77048130-77048149 None:intergenic 50.0%
TTCCCTAGACCACACCATGA+CGG - chr3_3:77048150-77048169 Msa0474200:intron 50.0%
! ACAAGAACGCGTGCAGCTTT+TGG - chr3_3:77048673-77048692 Msa0474200:intron 50.0%
! CAAGAACGCGTGCAGCTTTT+GGG - chr3_3:77048674-77048693 Msa0474200:intron 50.0%
GGTGAACCGCTTTCTGTTCT+AGG + chr3_3:77048738-77048757 None:intergenic 50.0%
GGCCCTGCTAACTCAATGAA+TGG + chr3_3:77050241-77050260 None:intergenic 50.0%
GTGGGGAAAGGGAAAGGAAA+AGG + chr3_3:77050628-77050647 None:intergenic 50.0%
ATACACGTGGGGAAAGGGAA+AGG + chr3_3:77050634-77050653 None:intergenic 50.0%
!! AGCAGGAGTGCCGTTAAGAC+CGG + chr3_3:77045453-77045472 None:intergenic 55.0%
! ACCTCTTTGGTGGATCGGCA+TGG - chr3_3:77045591-77045610 Msa0474200:CDS 55.0%
ACCATGCCGATCCACCAAAG+AGG + chr3_3:77045595-77045614 None:intergenic 55.0%
! AGTGGAGTAACAAGCACCGC+GGG + chr3_3:77045752-77045771 None:intergenic 55.0%
! GCGGTGCTTGTTACTCCACT+TGG - chr3_3:77045752-77045771 Msa0474200:intron 55.0%
TGCATGGAGCACGATCTCAG+TGG + chr3_3:77046192-77046211 None:intergenic 55.0%
! TATGCTGCTCCTGCTGACTG+AGG - chr3_3:77046271-77046290 Msa0474200:intron 55.0%
! CTCCTGCTGACTGAGGCTAT+TGG - chr3_3:77046278-77046297 Msa0474200:intron 55.0%
CACCAATAGCCTCAGTCAGC+AGG + chr3_3:77046283-77046302 None:intergenic 55.0%
! CTGCTGACTGAGGCTATTGG+TGG - chr3_3:77046281-77046300 Msa0474200:intron 55.0%
ATGGTTGGCATCGCAGGCAT+TGG - chr3_3:77047235-77047254 Msa0474200:intron 55.0%
GACTGGAGGATCTGGTACTC+TGG + chr3_3:77047544-77047563 None:intergenic 55.0%
!! CCTGTACTGACTGGAGGATC+TGG + chr3_3:77047552-77047571 None:intergenic 55.0%
CCAGATCCTCCAGTCAGTAC+AGG - chr3_3:77047549-77047568 Msa0474200:intron 55.0%
!! GCCTTACCTGTACTGACTGG+AGG + chr3_3:77047558-77047577 None:intergenic 55.0%
GATCCTCCCCGAAGTGCATT+AGG + chr3_3:77047580-77047599 None:intergenic 55.0%
GGTGTGGTCTAGGGAAGGTT+CGG + chr3_3:77048146-77048165 None:intergenic 55.0%
GTCATGGTGTGGTCTAGGGA+AGG + chr3_3:77048151-77048170 None:intergenic 55.0%
CTCCGTCATGGTGTGGTCTA+GGG + chr3_3:77048155-77048174 None:intergenic 55.0%
GTCAGCAGGAGCAGCATACC+TGG + chr3_3:77046269-77046288 None:intergenic 60.0%
CACAGCCTCGGCAATAGCTG+TGG - chr3_3:77046393-77046412 Msa0474200:intron 60.0%
GAACGCCACAGCTATTGCCG+AGG + chr3_3:77046401-77046420 None:intergenic 60.0%
AGGCCTAATGCACTTCGGGG+AGG - chr3_3:77047574-77047593 Msa0474200:intron 60.0%
GCTCCGTCATGGTGTGGTCT+AGG + chr3_3:77048156-77048175 None:intergenic 60.0%
! GCTGGAGCCGATGAAAGCGC+CGG + chr3_3:77045399-77045418 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 77045118 77050668 77045118 ID=Msa0474200;Name=Msa0474200
chr3_3 mRNA 77045118 77050668 77045118 ID=Msa0474200-mRNA-1;Parent=Msa0474200;Name=Msa0474200-mRNA-1;_AED=0.09;_eAED=0.09;_QI=232|1|1|1|0.88|0.8|10|424|346
chr3_3 exon 77045118 77045485 77045118 ID=Msa0474200-mRNA-1:exon:20438;Parent=Msa0474200-mRNA-1
chr3_3 exon 77045530 77045716 77045530 ID=Msa0474200-mRNA-1:exon:20437;Parent=Msa0474200-mRNA-1
chr3_3 exon 77048216 77048333 77048216 ID=Msa0474200-mRNA-1:exon:20436;Parent=Msa0474200-mRNA-1
chr3_3 exon 77048443 77048535 77048443 ID=Msa0474200-mRNA-1:exon:20435;Parent=Msa0474200-mRNA-1
chr3_3 exon 77049020 77049157 77049020 ID=Msa0474200-mRNA-1:exon:20434;Parent=Msa0474200-mRNA-1
chr3_3 exon 77049279 77049406 77049279 ID=Msa0474200-mRNA-1:exon:20433;Parent=Msa0474200-mRNA-1
chr3_3 exon 77049517 77049677 77049517 ID=Msa0474200-mRNA-1:exon:20432;Parent=Msa0474200-mRNA-1
chr3_3 exon 77049991 77050081 77049991 ID=Msa0474200-mRNA-1:exon:20431;Parent=Msa0474200-mRNA-1
chr3_3 exon 77050167 77050223 77050167 ID=Msa0474200-mRNA-1:exon:20430;Parent=Msa0474200-mRNA-1
chr3_3 exon 77050313 77050668 77050313 ID=Msa0474200-mRNA-1:exon:20429;Parent=Msa0474200-mRNA-1
chr3_3 five_prime_UTR 77050437 77050668 77050437 ID=Msa0474200-mRNA-1:five_prime_utr;Parent=Msa0474200-mRNA-1
chr3_3 CDS 77050313 77050436 77050313 ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1
chr3_3 CDS 77050167 77050223 77050167 ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1
chr3_3 CDS 77049991 77050081 77049991 ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1
chr3_3 CDS 77049517 77049677 77049517 ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1
chr3_3 CDS 77049279 77049406 77049279 ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1
chr3_3 CDS 77049020 77049157 77049020 ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1
chr3_3 CDS 77048443 77048535 77048443 ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1
chr3_3 CDS 77048216 77048333 77048216 ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1
chr3_3 CDS 77045586 77045716 77045586 ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1
chr3_3 three_prime_UTR 77045530 77045585 77045530 ID=Msa0474200-mRNA-1:three_prime_utr;Parent=Msa0474200-mRNA-1
chr3_3 three_prime_UTR 77045118 77045485 77045118 ID=Msa0474200-mRNA-1:three_prime_utr;Parent=Msa0474200-mRNA-1
Gene Sequence

>Msa0474200

ATGTACACCTCCAGCAATTTGATTGGCTTCATCTTGGCCGTTGTTTCCGGCGCTTTCATCGGCTCCAGCTTCATCATTAAGAAAAAAGGTCTTCAACGTGCCGGTCTTAACGGCACTCCTGCTAGTGTCGGAGGCTATGGTTATCTTCTTCAACCTCTTTGGTGGATCGGCATGGTTACTATGATTGTTGGAGAAATTGCAAATTTTGTAGCATACATTTATGCGCCCGCGGTGCTTGTTACTCCACTTGGTGCTTTGAGTATTATTGTTAGTGCTGTATTTTCTCATTTCATGTTGGGTGAGAAGTTACAGAAAATGGGCATGCTTGGGTGTCTTCTATGCATTGTCGGGTCCACTGAGATCGTGCTCCATGCACCCCAAGAAAAGTCTCTTACTTCTGTGCTAGAAATATGGCTTTTGGCTGTTCAACCAGCATTTCTCTTGTACACAGCCTCGGCAATAGCTGTGGCGTTCTTTTTGATTTTGTATTGTGCGCCTCGCTATGGCCAAACTAATATCTTCGTTTACATTGGAATATGCTCCATAATTGGATCATTGACTGTCATGAGCGTAAAAGCGATTGGCATTGCTATTAAACTTACATTAGATGGTGCAAACCAGTTTGTTTACTTTCAGACATGGATTTTTACAATGGTCGCCATTTCCTGCATCATTACCAGTTTAAATTACCTTAATATGGCATTGGATACTTTCAACACAGCAGTCGTTTCTCCAATCTACTATGCCTTGTTCACATCTTTTACAATATTAGCCAGCGCAATTATGTTTAAGGACTATTCTGGACAAAGTATAAGCAGCATTGCATCGGAGCTATGTGGTTTCATCACTGTTTTATCCGGAACAACTGTATTGCACAGTACCAGAGTACCAGATCCTCCAGTCAGTACAGATGTGTACAGTCCCTTGTCTCCAAAAGTATCATGGTATATCCAAGGCAACAGTGAACAATGGAAACAGAAGGAAGACGATGGACCGCCCCTTAATTTAATTAAGATTATCCAGCAAGATCATTTCAAGTGA

Protein sequence

>Msa0474200

MYTSSNLIGFILAVVSGAFIGSSFIIKKKGLQRAGLNGTPASVGGYGYLLQPLWWIGMVTMIVGEIANFVAYIYAPAVLVTPLGALSIIVSAVFSHFMLGEKLQKMGMLGCLLCIVGSTEIVLHAPQEKSLTSVLEIWLLAVQPAFLLYTASAIAVAFFLILYCAPRYGQTNIFVYIGICSIIGSLTVMSVKAIGIAIKLTLDGANQFVYFQTWIFTMVAISCIITSLNYLNMALDTFNTAVVSPIYYALFTSFTILASAIMFKDYSGQSISSIASELCGFITVLSGTTVLHSTRVPDPPVSTDVYSPLSPKVSWYIQGNSEQWKQKEDDGPPLNLIKIIQQDHFK*