Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0474200 | XP_013461608.1 | 99.422 | 346 | 2 | 0 | 1 | 346 | 1 | 346 | 0.0 | 694 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0474200 | sp|Q8GWX2|NIPA6_ARATH | 65.176 | 313 | 103 | 1 | 4 | 316 | 3 | 309 | 9.76e-144 | 412 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0474200 | A0A072V2P7 | 99.422 | 346 | 2 | 0 | 1 | 346 | 1 | 346 | 0.0 | 694 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0140700 | Msa0474200 | 0.813416 | 2.587586e-51 | -8.615850e-47 |
Msa0474200 | Msa1361560 | 0.881882 | 1.658710e-70 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0474200 | MtrunA17_Chr3g0130971 | 99.422 | 346 | 2 | 0 | 1 | 346 | 1 | 346 | 0.0 | 694 |
Msa0474200 | MtrunA17_Chr8g0385101 | 81.395 | 344 | 64 | 0 | 3 | 346 | 2 | 345 | 0.0 | 584 |
Msa0474200 | MtrunA17_Chr4g0037541 | 62.805 | 328 | 115 | 1 | 1 | 328 | 1 | 321 | 3.00e-148 | 421 |
Msa0474200 | MtrunA17_Chr8g0378181 | 62.116 | 293 | 111 | 0 | 3 | 295 | 4 | 296 | 9.78e-134 | 384 |
Msa0474200 | MtrunA17_Chr5g0442091 | 56.358 | 346 | 143 | 5 | 3 | 342 | 4 | 347 | 1.81e-128 | 371 |
Msa0474200 | MtrunA17_Chr2g0277341 | 61.775 | 293 | 112 | 0 | 3 | 295 | 14 | 306 | 8.70e-127 | 367 |
Msa0474200 | MtrunA17_Chr3g0121551 | 56.211 | 322 | 139 | 2 | 3 | 322 | 4 | 325 | 4.68e-123 | 357 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0474200 | AT2G21120.1 | 65.176 | 313 | 103 | 1 | 4 | 316 | 3 | 309 | 9.92e-145 | 412 |
Msa0474200 | AT4G38730.1 | 67.119 | 295 | 97 | 0 | 4 | 298 | 3 | 297 | 1.15e-144 | 412 |
Msa0474200 | AT1G71900.1 | 58.559 | 333 | 125 | 3 | 3 | 335 | 16 | 335 | 1.76e-139 | 399 |
Msa0474200 | AT1G71900.2 | 63.140 | 293 | 108 | 0 | 3 | 295 | 16 | 308 | 7.92e-138 | 395 |
Msa0474200 | AT1G34470.1 | 62.799 | 293 | 109 | 0 | 3 | 295 | 16 | 308 | 4.91e-136 | 392 |
Msa0474200 | AT4G09640.1 | 58.160 | 337 | 140 | 1 | 3 | 338 | 16 | 352 | 1.64e-125 | 365 |
Msa0474200 | AT4G13800.5 | 61.364 | 308 | 119 | 0 | 5 | 312 | 7 | 314 | 1.01e-124 | 362 |
Msa0474200 | AT4G13800.1 | 61.364 | 308 | 119 | 0 | 5 | 312 | 7 | 314 | 1.01e-124 | 362 |
Msa0474200 | AT4G13800.8 | 61.364 | 308 | 119 | 0 | 5 | 312 | 7 | 314 | 1.01e-124 | 362 |
Msa0474200 | AT4G13800.10 | 61.364 | 308 | 119 | 0 | 5 | 312 | 7 | 314 | 1.01e-124 | 362 |
Msa0474200 | AT3G23870.1 | 64.261 | 291 | 104 | 0 | 5 | 295 | 7 | 297 | 3.84e-118 | 345 |
Msa0474200 | AT3G23870.3 | 64.261 | 291 | 104 | 0 | 5 | 295 | 7 | 297 | 3.84e-118 | 345 |
Msa0474200 | AT3G23870.2 | 64.261 | 291 | 104 | 0 | 5 | 295 | 7 | 297 | 3.84e-118 | 345 |
Msa0474200 | AT3G23870.4 | 64.261 | 291 | 104 | 0 | 5 | 295 | 7 | 297 | 3.84e-118 | 345 |
Msa0474200 | AT4G13800.6 | 64.122 | 262 | 94 | 0 | 3 | 264 | 5 | 266 | 5.82e-110 | 322 |
Msa0474200 | AT4G13800.2 | 64.122 | 262 | 94 | 0 | 3 | 264 | 5 | 266 | 5.82e-110 | 322 |
Msa0474200 | AT4G13800.9 | 62.609 | 230 | 86 | 0 | 3 | 232 | 5 | 234 | 6.58e-91 | 272 |
Msa0474200 | AT4G13800.7 | 62.609 | 230 | 86 | 0 | 3 | 232 | 5 | 234 | 6.58e-91 | 272 |
Msa0474200 | AT4G13800.4 | 62.609 | 230 | 86 | 0 | 3 | 232 | 5 | 234 | 6.58e-91 | 272 |
Msa0474200 | AT4G13800.3 | 62.609 | 230 | 86 | 0 | 3 | 232 | 5 | 234 | 6.58e-91 | 272 |
Msa0474200 | AT3G23870.5 | 60.476 | 210 | 83 | 0 | 86 | 295 | 8 | 217 | 1.40e-88 | 267 |
Find 118 sgRNAs with CRISPR-Local
Find 340 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGCCAGCGCAATTATGTTTA+AGG | 0.107560 | 3_3:-77048442 | Msa0474200:intron |
GGATAATCTTAATTAAATTA+AGG | 0.172289 | 3_3:+77045606 | None:intergenic |
GATGAAGAAGAATTTGATTT+TGG | 0.196779 | 3_3:+77050465 | None:intergenic |
GATAGAACCCAAGCTTTAAT+TGG | 0.204593 | 3_3:+77045267 | None:intergenic |
TTCATCTTGGCCGTTGTTTC+CGG | 0.207425 | 3_3:-77050387 | Msa0474200:CDS |
GGGTGAGAAGTTACAGAAAA+TGG | 0.211943 | 3_3:-77049631 | Msa0474200:CDS |
ATTGGAATATGCTCCATAAT+TGG | 0.219095 | 3_3:-77049289 | Msa0474200:CDS |
GTTATCTTCTTCAACCTCTT+TGG | 0.228989 | 3_3:-77050186 | Msa0474200:CDS |
TGGATATACCATGATACTTT+TGG | 0.233104 | 3_3:+77045674 | None:intergenic |
TACTACTGCAAATACAAAAC+TGG | 0.237363 | 3_3:+77045216 | None:intergenic |
CTTCTCATTTAGGACTATTC+TGG | 0.239931 | 3_3:-77048323 | Msa0474200:intron |
AAGAAATGTAGCTGTGTTAT+AGG | 0.249387 | 3_3:-77045419 | Msa0474200:three_prime_UTR |
TTACTTCTGTGCTAGAAATA+TGG | 0.262020 | 3_3:-77049536 | Msa0474200:CDS |
GCTATTAAACTTACATTAGA+TGG | 0.277983 | 3_3:-77049108 | Msa0474200:CDS |
CAGTTTAAATTACCTTAATA+TGG | 0.300539 | 3_3:-77049019 | Msa0474200:intron |
TGTGCTAGAAATATGGCTTT+TGG | 0.313475 | 3_3:-77049529 | Msa0474200:CDS |
TACAGTCAATGATCCAATTA+TGG | 0.326528 | 3_3:+77049276 | None:intergenic |
GTGCTTTGAGTATTATTGTT+AGG | 0.346869 | 3_3:-77049990 | Msa0474200:intron |
TACAGTATGAAGCAGAAATA+TGG | 0.348057 | 3_3:-77045468 | Msa0474200:intron |
AGCTTTATTGCAGTGATTGT+TGG | 0.355542 | 3_3:-77050072 | Msa0474200:intron |
GTCTTTATTAATTGTGCAGT+GGG | 0.357367 | 3_3:+77050605 | None:intergenic |
CATATTAAGGTAATTTAAAC+TGG | 0.357572 | 3_3:+77049020 | None:intergenic |
AGAAATGTAGCTGTGTTATA+GGG | 0.360019 | 3_3:-77045418 | Msa0474200:three_prime_UTR |
ATCACTTGAAATGATCTTGC+TGG | 0.376053 | 3_3:+77045585 | None:intergenic |
GAGTGATACTGACCATATTA+AGG | 0.377874 | 3_3:+77049007 | None:intergenic |
ATTAATTGTGCAGTGGGGTT+GGG | 0.381403 | 3_3:+77050611 | None:intergenic |
GATAATCTTAATTAAATTAA+GGG | 0.383033 | 3_3:+77045607 | None:intergenic |
TGTAAACGAAGATATTAGTT+TGG | 0.387230 | 3_3:+77049311 | None:intergenic |
TATTAATTGTGCAGTGGGGT+TGG | 0.389302 | 3_3:+77050610 | None:intergenic |
CTTATAATTCCATTCTAGCT+AGG | 0.397260 | 3_3:-77050496 | Msa0474200:five_prime_UTR |
GATGAAGCCAATCAAATTGC+TGG | 0.399411 | 3_3:+77050404 | None:intergenic |
ATCATATCCAATTAAAGCTT+GGG | 0.401106 | 3_3:-77045274 | Msa0474200:three_prime_UTR |
CATCCATTCATTGAGTTAGC+AGG | 0.403261 | 3_3:-77045529 | Msa0474200:intron |
TCTCTGTGATCCCATCCATT+TGG | 0.406675 | 3_3:-77045391 | Msa0474200:three_prime_UTR |
GAATCTCTTGCTAAACCAAA+TGG | 0.406968 | 3_3:+77045376 | None:intergenic |
CAATTTGATTGGCTTCATCT+TGG | 0.410727 | 3_3:-77050400 | Msa0474200:CDS |
ATCTTCTTCAACCTCTTTGG+TGG | 0.411998 | 3_3:-77050183 | Msa0474200:CDS |
GATTGGAACCCTAGCTAGAA+TGG | 0.413862 | 3_3:+77050487 | None:intergenic |
TACACCTCCAGCAATTTGAT+TGG | 0.420844 | 3_3:-77050411 | Msa0474200:CDS |
GTGATATTGAAATCTTAAAC+TGG | 0.423429 | 3_3:-77045567 | Msa0474200:exon |
CTTCAACCTCTTTGGTGGAT+CGG | 0.423526 | 3_3:-77050178 | Msa0474200:CDS |
CTTCAACGTGCCGGTCTTAA+CGG | 0.423933 | 3_3:-77050324 | Msa0474200:CDS |
GGGTGTCTTCTATGCATTGT+CGG | 0.427769 | 3_3:-77049600 | Msa0474200:CDS |
ACAGTTGTTACGACTTGGTT+TGG | 0.431976 | 3_3:+77050634 | None:intergenic |
TTGAAATTGAAAGTTTAAAG+TGG | 0.432202 | 3_3:+77050544 | None:intergenic |
TCCATTGTTCACTGTTGCCT+TGG | 0.432868 | 3_3:+77045654 | None:intergenic |
AAGAAATACACGTGGGGAAA+GGG | 0.434403 | 3_3:+77045128 | None:intergenic |
ACTAATATCTTCGTTTACAT+TGG | 0.436105 | 3_3:-77049307 | Msa0474200:CDS |
GGTTCTATCATCTGAAACTA+AGG | 0.436474 | 3_3:-77045253 | Msa0474200:three_prime_UTR |
CCTGTACTGACTGGAGGATC+TGG | 0.438220 | 3_3:+77048215 | None:intergenic |
ACTGTGCAATACAGTTGTTC+CGG | 0.443934 | 3_3:+77048247 | None:intergenic |
ACTGGTAATGATGCAGGAAA+TGG | 0.447294 | 3_3:+77049038 | None:intergenic |
GTTGTTTCCGGCGCTTTCAT+CGG | 0.447699 | 3_3:-77050375 | Msa0474200:CDS |
TATCATATCCAATTAAAGCT+TGG | 0.448724 | 3_3:-77045275 | Msa0474200:three_prime_UTR |
GTGGGGAAAGGGAAAGGAAA+AGG | 0.451882 | 3_3:+77045139 | None:intergenic |
TTACAGAAAATGGGCATGCT+TGG | 0.455638 | 3_3:-77049621 | Msa0474200:CDS |
ATTTCAGGTGTCGGAGGCTA+TGG | 0.456831 | 3_3:-77050208 | Msa0474200:intron |
TTGTATTGTGCGCCTCGCTA+TGG | 0.458334 | 3_3:-77049334 | Msa0474200:CDS |
ATGTCTGAAAGTAAACAAAC+TGG | 0.466202 | 3_3:+77049079 | None:intergenic |
ATACAACAACTAAACAAAAC+AGG | 0.470857 | 3_3:+77045181 | None:intergenic |
TACAGAAAATGGGCATGCTT+GGG | 0.471819 | 3_3:-77049620 | Msa0474200:CDS |
GGTGTCTTCTATGCATTGTC+GGG | 0.471983 | 3_3:-77049599 | Msa0474200:CDS |
GTGAACAAGGCATAGTAGAT+TGG | 0.482283 | 3_3:+77048480 | None:intergenic |
ATTTAAACTGGTAATGATGC+AGG | 0.482970 | 3_3:+77049032 | None:intergenic |
AAAGAAATACACGTGGGGAA+AGG | 0.496797 | 3_3:+77045127 | None:intergenic |
TTATAATTCCATTCTAGCTA+GGG | 0.499028 | 3_3:-77050495 | Msa0474200:five_prime_UTR |
GACTGGAGGATCTGGTACTC+TGG | 0.501439 | 3_3:+77048223 | None:intergenic |
GGCCCTGCTAACTCAATGAA+TGG | 0.503144 | 3_3:+77045526 | None:intergenic |
GGTGAGAAGTTACAGAAAAT+GGG | 0.507262 | 3_3:-77049630 | Msa0474200:CDS |
TGTCTTTATTAATTGTGCAG+TGG | 0.511754 | 3_3:+77050604 | None:intergenic |
CTCTTGCTAAACCAAATGGA+TGG | 0.517969 | 3_3:+77045380 | None:intergenic |
ATCCATTCATTGAGTTAGCA+GGG | 0.520879 | 3_3:-77045528 | Msa0474200:intron |
GCGGTGCTTGTTACTCCACT+TGG | 0.520959 | 3_3:-77050012 | Msa0474200:CDS |
TTGGGACAGTTGTTACGACT+TGG | 0.531995 | 3_3:+77050629 | None:intergenic |
CCTTGTCTCCAAAAGTATCA+TGG | 0.537055 | 3_3:-77045682 | Msa0474200:CDS |
CCAGATCCTCCAGTCAGTAC+AGG | 0.543909 | 3_3:-77048215 | Msa0474200:intron |
AACCTTAAACATAATTGCGC+TGG | 0.546072 | 3_3:+77048440 | None:intergenic |
CAATTAATAAAGACAGAAAG+AGG | 0.547116 | 3_3:-77050596 | Msa0474200:five_prime_UTR |
ACCTCTTTGGTGGATCGGCA+TGG | 0.547620 | 3_3:-77050173 | Msa0474200:CDS |
GTTTAAAGTGGATGAAAATG+TGG | 0.549178 | 3_3:+77050556 | None:intergenic |
AGCAGGAGTGCCGTTAAGAC+CGG | 0.549846 | 3_3:+77050314 | None:intergenic |
ATTTCTCTTGTACACAGCCT+CGG | 0.549853 | 3_3:-77049383 | Msa0474200:CDS |
TGGGGAAAGGGAAAGGAAAA+GGG | 0.554246 | 3_3:+77045140 | None:intergenic |
GATGAAAGCGCCGGAAACAA+CGG | 0.554308 | 3_3:+77050377 | None:intergenic |
ATCATCTGAAACTAAGGAGG+TGG | 0.561883 | 3_3:-77045247 | Msa0474200:three_prime_UTR |
TCTTGCTAAACCAAATGGAT+GGG | 0.569603 | 3_3:+77045381 | None:intergenic |
AAGTATAAGCAGCATTGCAT+CGG | 0.570033 | 3_3:-77048297 | Msa0474200:CDS |
GTCATGAGCGTAAAAGCGAT+TGG | 0.570641 | 3_3:-77049135 | Msa0474200:CDS |
AAAGTATCATGGTATATCCA+AGG | 0.578962 | 3_3:-77045671 | Msa0474200:CDS |
ATAATCTTAATTAAATTAAG+GGG | 0.580054 | 3_3:+77045608 | None:intergenic |
GTATGAAGCAGAAATATGGC+TGG | 0.583248 | 3_3:-77045464 | Msa0474200:three_prime_UTR |
TATTGAAATCTTAAACTGGT+AGG | 0.585003 | 3_3:-77045563 | Msa0474200:three_prime_UTR |
ATACACGTGGGGAAAGGGAA+AGG | 0.587100 | 3_3:+77045133 | None:intergenic |
ACTACTGCAAATACAAAACT+GGG | 0.588563 | 3_3:+77045217 | None:intergenic |
TAGGCCTTACCTGTACTGAC+TGG | 0.594862 | 3_3:+77048206 | None:intergenic |
CACAGCCTCGGCAATAGCTG+TGG | 0.597556 | 3_3:-77049371 | Msa0474200:CDS |
ATCTTAATTAAATTAAGGGG+CGG | 0.598280 | 3_3:+77045611 | None:intergenic |
AGTGGAGTAACAAGCACCGC+GGG | 0.601169 | 3_3:+77050015 | None:intergenic |
AGTTTGTTTACTTTCAGACA+TGG | 0.604205 | 3_3:-77049077 | Msa0474200:CDS |
TCCAAGGCAACAGTGAACAA+TGG | 0.615061 | 3_3:-77045655 | Msa0474200:CDS |
TTTACGATTTCAGGTGTCGG+AGG | 0.615243 | 3_3:-77050214 | Msa0474200:intron |
AGCATTGCATCGGAGCTATG+TGG | 0.620149 | 3_3:-77048287 | Msa0474200:CDS |
GCTGGAGCCGATGAAAGCGC+CGG | 0.622386 | 3_3:+77050368 | None:intergenic |
CAGTGAACAATGGAAACAGA+AGG | 0.632620 | 3_3:-77045645 | Msa0474200:CDS |
GCCTTACCTGTACTGACTGG+AGG | 0.634907 | 3_3:+77048209 | None:intergenic |
TATTGTAAAAGATGTGAACA+AGG | 0.639922 | 3_3:+77048467 | None:intergenic |
ATATTAGTTTGGCCATAGCG+AGG | 0.640349 | 3_3:+77049322 | None:intergenic |
ACCATGCCGATCCACCAAAG+AGG | 0.641294 | 3_3:+77050172 | None:intergenic |
ATAATACTCAAAGCACCAAG+TGG | 0.642312 | 3_3:+77049997 | None:intergenic |
TCTATCATCTGAAACTAAGG+AGG | 0.648641 | 3_3:-77045250 | Msa0474200:three_prime_UTR |
AGCATACATTTATGCGCCCG+CGG | 0.652080 | 3_3:-77050031 | Msa0474200:CDS |
GAAGCCAATCAAATTGCTGG+AGG | 0.663080 | 3_3:+77050407 | None:intergenic |
CACATTGTGTAGCAAGACAG+AGG | 0.670035 | 3_3:-77045340 | Msa0474200:three_prime_UTR |
TGGAAACAGAAGGAAGACGA+TGG | 0.672702 | 3_3:-77045635 | Msa0474200:CDS |
GAACGCCACAGCTATTGCCG+AGG | 0.679324 | 3_3:+77049366 | None:intergenic |
TGCATGGAGCACGATCTCAG+TGG | 0.684014 | 3_3:+77049575 | None:intergenic |
TCTTTATTAATTGTGCAGTG+GGG | 0.707095 | 3_3:+77050606 | None:intergenic |
AAGTGGAGTAACAAGCACCG+CGG | 0.779673 | 3_3:+77050014 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAGATAATTAAAGATATTAA+CGG | + | chr3_3:77047869-77047888 | None:intergenic | 10.0% |
!! | ATAATCTTAATTAAATTAAG+GGG | + | chr3_3:77050159-77050178 | None:intergenic | 10.0% |
!! | GATAATCTTAATTAAATTAA+GGG | + | chr3_3:77050160-77050179 | None:intergenic | 10.0% |
!! | TTTAACTATAAGCTAAAATT+TGG | + | chr3_3:77045933-77045952 | None:intergenic | 15.0% |
!! | TATATGTTAGTTAAAAAGTA+TGG | - | chr3_3:77047973-77047992 | Msa0474200:intron | 15.0% |
!!! | ATATGATATTTGAAGTATTT+TGG | + | chr3_3:77048404-77048423 | None:intergenic | 15.0% |
!! | AAAAGCAAAAAAATATGTAT+GGG | + | chr3_3:77048803-77048822 | None:intergenic | 15.0% |
!! | AAAAAGCAAAAAAATATGTA+TGG | + | chr3_3:77048804-77048823 | None:intergenic | 15.0% |
!!! | ATTTGTTATAAACAAAGATT+AGG | - | chr3_3:77048833-77048852 | Msa0474200:intron | 15.0% |
!! | TTAAAAACTTCTTCAAAAAA+AGG | + | chr3_3:77049055-77049074 | None:intergenic | 15.0% |
!! | AATCAAATATTGCTATAATA+AGG | + | chr3_3:77049085-77049104 | None:intergenic | 15.0% |
!! | AAAGAAAATAAGTCTTTAAT+CGG | + | chr3_3:77049308-77049327 | None:intergenic | 15.0% |
!!! | ATTTTTCAATTAAGATAACA+AGG | - | chr3_3:77049552-77049571 | Msa0474200:CDS | 15.0% |
!!! | TTTTTCAATTAAGATAACAA+GGG | - | chr3_3:77049553-77049572 | Msa0474200:CDS | 15.0% |
!! | GGATAATCTTAATTAAATTA+AGG | + | chr3_3:77050161-77050180 | None:intergenic | 15.0% |
!! | TTGAAATTGAAAGTTTAAAG+TGG | + | chr3_3:77045223-77045242 | None:intergenic | 20.0% |
!! | TTAGTTAGTTAGTTACATAA+CGG | + | chr3_3:77045529-77045548 | None:intergenic | 20.0% |
!!! | TGAATTATGATTTTACTCTT+TGG | - | chr3_3:77046341-77046360 | Msa0474200:intron | 20.0% |
!! | CATATTAAGGTAATTTAAAC+TGG | + | chr3_3:77046747-77046766 | None:intergenic | 20.0% |
!! | CAGTTTAAATTACCTTAATA+TGG | - | chr3_3:77046745-77046764 | Msa0474200:intron | 20.0% |
!!! | TGTTAATATATTTTTCGGTA+TGG | - | chr3_3:77046791-77046810 | Msa0474200:intron | 20.0% |
!! | ACAATTTGCAATTCAAAATT+CGG | + | chr3_3:77047122-77047141 | None:intergenic | 20.0% |
!!! | AGGTTGGTATTTTATTTTAT+TGG | - | chr3_3:77047342-77047361 | Msa0474200:intron | 20.0% |
!! | AAATGGCACATATAATTATA+AGG | + | chr3_3:77047620-77047639 | None:intergenic | 20.0% |
!! | AAATACAGTACTGTATTAAA+AGG | - | chr3_3:77048209-77048228 | Msa0474200:intron | 20.0% |
!! | AATACAGTACTGTATTAAAA+GGG | - | chr3_3:77048210-77048229 | Msa0474200:intron | 20.0% |
!! | TTAAAAGGGAGAAATTTAAT+CGG | - | chr3_3:77048224-77048243 | Msa0474200:CDS | 20.0% |
!! | TGATGAAAATGATTATATCA+TGG | - | chr3_3:77048254-77048273 | Msa0474200:CDS | 20.0% |
!! | AAAATCAAACATAACTCTTA+GGG | - | chr3_3:77048496-77048515 | Msa0474200:CDS | 20.0% |
!! | AAAAGAACCTAAATATTACA+GGG | + | chr3_3:77048759-77048778 | None:intergenic | 20.0% |
!! | TAAAAGAACCTAAATATTAC+AGG | + | chr3_3:77048760-77048779 | None:intergenic | 20.0% |
!!! | AAAAAAAGTATGTATCGTAA+GGG | + | chr3_3:77049756-77049775 | None:intergenic | 20.0% |
!!! | TAAAAAAAGTATGTATCGTA+AGG | + | chr3_3:77049757-77049776 | None:intergenic | 20.0% |
! | CAATTAATAAAGACAGAAAG+AGG | - | chr3_3:77045168-77045187 | Msa0474200:three_prime_UTR | 25.0% |
!! | TTATAATTCCATTCTAGCTA+GGG | - | chr3_3:77045269-77045288 | Msa0474200:three_prime_UTR | 25.0% |
!!! | AGAAGAATTTGATTTTGGAT+TGG | + | chr3_3:77045297-77045316 | None:intergenic | 25.0% |
!!! | GATGAAGAAGAATTTGATTT+TGG | + | chr3_3:77045302-77045321 | None:intergenic | 25.0% |
!!! | TTTTTTCTTAATGATGAAGC+TGG | + | chr3_3:77045417-77045436 | None:intergenic | 25.0% |
! | AGCTTCATCATTAAGAAAAA+AGG | - | chr3_3:77045416-77045435 | Msa0474200:three_prime_UTR | 25.0% |
! | AGATAAAGAATAGAGTTGTT+AGG | + | chr3_3:77045635-77045654 | None:intergenic | 25.0% |
!!! | AATTTTGACTCATCCAAAAT+TGG | - | chr3_3:77045971-77045990 | Msa0474200:intron | 25.0% |
! | TCAAAGCTTAAAAAGCAAAA+GGG | + | chr3_3:77046035-77046054 | None:intergenic | 25.0% |
! | TTCAAAGCTTAAAAAGCAAA+AGG | + | chr3_3:77046036-77046055 | None:intergenic | 25.0% |
!! | TGTATTTTCTCATTTCATGT+TGG | - | chr3_3:77046112-77046131 | Msa0474200:intron | 25.0% |
!! | GTATTTTCTCATTTCATGTT+GGG | - | chr3_3:77046113-77046132 | Msa0474200:intron | 25.0% |
! | TGTAAACGAAGATATTAGTT+TGG | + | chr3_3:77046456-77046475 | None:intergenic | 25.0% |
! | ACTAATATCTTCGTTTACAT+TGG | - | chr3_3:77046457-77046476 | Msa0474200:intron | 25.0% |
! | GTTGAGAAATGTAAATCAAA+AGG | + | chr3_3:77046581-77046600 | None:intergenic | 25.0% |
!! | AATATCTTGTTTCTCATTTC+AGG | - | chr3_3:77046607-77046626 | Msa0474200:intron | 25.0% |
! | GCTATTAAACTTACATTAGA+TGG | - | chr3_3:77046656-77046675 | Msa0474200:intron | 25.0% |
! | TCATAATCTTATATGGTTCA+TGG | - | chr3_3:77046885-77046904 | Msa0474200:intron | 25.0% |
! | AACTCATGTTGAAAATACTA+AGG | + | chr3_3:77046929-77046948 | None:intergenic | 25.0% |
! | ATCATTACTTGGATGTTATT+TGG | + | chr3_3:77047047-77047066 | None:intergenic | 25.0% |
! | AATAACATCCAAGTAATGAT+TGG | - | chr3_3:77047047-77047066 | Msa0474200:intron | 25.0% |
! | CAATTTGCAATTCAAAATTC+GGG | + | chr3_3:77047121-77047140 | None:intergenic | 25.0% |
! | TATTGTAAAAGATGTGAACA+AGG | + | chr3_3:77047300-77047319 | None:intergenic | 25.0% |
! | CAAAGTAAAAAATGCATCTT+AGG | - | chr3_3:77047367-77047386 | Msa0474200:intron | 25.0% |
! | TAAAAGGGAGAAATTTAATC+GGG | - | chr3_3:77048225-77048244 | Msa0474200:CDS | 25.0% |
! | CAAAATCAAACATAACTCTT+AGG | - | chr3_3:77048495-77048514 | Msa0474200:CDS | 25.0% |
! | ATAGTTCCAATTTAATTGGA+AGG | - | chr3_3:77048698-77048717 | Msa0474200:intron | 25.0% |
! | TTGTAACCTTCCAATTAAAT+TGG | + | chr3_3:77048707-77048726 | None:intergenic | 25.0% |
! | ATATTGCTATAATAAGGACT+AGG | + | chr3_3:77049079-77049098 | None:intergenic | 25.0% |
! | TATAGCATAAGCATATTAAG+CGG | + | chr3_3:77049112-77049131 | None:intergenic | 25.0% |
! | GGAAATTACTACTGTAATAT+AGG | - | chr3_3:77049164-77049183 | Msa0474200:intron | 25.0% |
! | AGCTTATCAAAAAACACTTT+AGG | - | chr3_3:77049619-77049638 | Msa0474200:CDS | 25.0% |
! | ATAAACTTGTGAGAAAATGA+TGG | - | chr3_3:77049658-77049677 | Msa0474200:CDS | 25.0% |
! | AGATTTCGAACAAAAATGTT+TGG | - | chr3_3:77049870-77049889 | Msa0474200:intron | 25.0% |
!! | GGTTTCTTAGTGTAATATTT+TGG | - | chr3_3:77049929-77049948 | Msa0474200:intron | 25.0% |
!!! | TTCTTAGTGTAATATTTTGG+TGG | - | chr3_3:77049932-77049951 | Msa0474200:intron | 25.0% |
! | ATCTTAATTAAATTAAGGGG+CGG | + | chr3_3:77050156-77050175 | None:intergenic | 25.0% |
! | GTGATATTGAAATCTTAAAC+TGG | - | chr3_3:77050197-77050216 | Msa0474200:CDS | 25.0% |
! | TATTGAAATCTTAAACTGGT+AGG | - | chr3_3:77050201-77050220 | Msa0474200:CDS | 25.0% |
! | TATCATATCCAATTAAAGCT+TGG | - | chr3_3:77050489-77050508 | Msa0474200:five_prime_UTR | 25.0% |
! | ATCATATCCAATTAAAGCTT+GGG | - | chr3_3:77050490-77050509 | Msa0474200:five_prime_UTR | 25.0% |
! | ATACAACAACTAAACAAAAC+AGG | + | chr3_3:77050586-77050605 | None:intergenic | 25.0% |
TCTTTATTAATTGTGCAGTG+GGG | + | chr3_3:77045161-77045180 | None:intergenic | 30.0% | |
GTCTTTATTAATTGTGCAGT+GGG | + | chr3_3:77045162-77045181 | None:intergenic | 30.0% | |
TGTCTTTATTAATTGTGCAG+TGG | + | chr3_3:77045163-77045182 | None:intergenic | 30.0% | |
! | GTTTAAAGTGGATGAAAATG+TGG | + | chr3_3:77045211-77045230 | None:intergenic | 30.0% |
! | CTTATAATTCCATTCTAGCT+AGG | - | chr3_3:77045268-77045287 | Msa0474200:three_prime_UTR | 30.0% |
CTAACTAACTTTACGATTTC+AGG | - | chr3_3:77045541-77045560 | Msa0474200:three_prime_UTR | 30.0% | |
AAGAATAGAGTTGTTAGGTT+AGG | + | chr3_3:77045630-77045649 | None:intergenic | 30.0% | |
! | GTGCTTTGAGTATTATTGTT+AGG | - | chr3_3:77045774-77045793 | Msa0474200:intron | 30.0% |
!! | TGTATGTTTGGTTCCAATTT+TGG | + | chr3_3:77045987-77046006 | None:intergenic | 30.0% |
AAAGCTTAAAAAGCAAAAGG+GGG | + | chr3_3:77046033-77046052 | None:intergenic | 30.0% | |
CAAAGCTTAAAAAGCAAAAG+GGG | + | chr3_3:77046034-77046053 | None:intergenic | 30.0% | |
!!! | CTTTTGTTTGTTTTTGCTTG+TGG | - | chr3_3:77046071-77046090 | Msa0474200:intron | 30.0% |
!!! | TTTGTTTTTGCTTGTGGAAA+TGG | - | chr3_3:77046077-77046096 | Msa0474200:intron | 30.0% |
! | AGAAGTAAGAGACTTTTCTT+GGG | + | chr3_3:77046216-77046235 | None:intergenic | 30.0% |
TTACTTCTGTGCTAGAAATA+TGG | - | chr3_3:77046228-77046247 | Msa0474200:intron | 30.0% | |
ATTGGAATATGCTCCATAAT+TGG | - | chr3_3:77046475-77046494 | Msa0474200:intron | 30.0% | |
TACAGTCAATGATCCAATTA+TGG | + | chr3_3:77046491-77046510 | None:intergenic | 30.0% | |
ATGATAAAGGTGAATTGGAT+TGG | + | chr3_3:77046524-77046543 | None:intergenic | 30.0% | |
CTAGAATGATAAAGGTGAAT+TGG | + | chr3_3:77046529-77046548 | None:intergenic | 30.0% | |
CTGTTGACAAAATTCAATAG+TGG | - | chr3_3:77046549-77046568 | Msa0474200:intron | 30.0% | |
TTGACAAAATTCAATAGTGG+AGG | - | chr3_3:77046552-77046571 | Msa0474200:intron | 30.0% | |
ATGTCTGAAAGTAAACAAAC+TGG | + | chr3_3:77046688-77046707 | None:intergenic | 30.0% | |
! | AGTTTGTTTACTTTCAGACA+TGG | - | chr3_3:77046687-77046706 | Msa0474200:intron | 30.0% |
! | TCAGACATGGATTTTTACAA+TGG | - | chr3_3:77046700-77046719 | Msa0474200:intron | 30.0% |
! | ATTTAAACTGGTAATGATGC+AGG | + | chr3_3:77046735-77046754 | None:intergenic | 30.0% |
!!! | TCTAGTACAAGAAAGCATTT+TGG | - | chr3_3:77046847-77046866 | Msa0474200:intron | 30.0% |
GGGTGATTCATAATCTTATA+TGG | - | chr3_3:77046878-77046897 | Msa0474200:intron | 30.0% | |
GTTCAAGATTATATCAGTTC+TGG | + | chr3_3:77047090-77047109 | None:intergenic | 30.0% | |
!! | TAACTTGCTTGTTAAGTTTC+TGG | - | chr3_3:77047166-77047185 | Msa0474200:intron | 30.0% |
! | AACTTGCTTGTTAAGTTTCT+GGG | - | chr3_3:77047167-77047186 | Msa0474200:intron | 30.0% |
TATAAGCAATATTCTGACTG+AGG | + | chr3_3:77047696-77047715 | None:intergenic | 30.0% | |
!! | ATGTGACATGCATTTTGAAA+CGG | - | chr3_3:77048032-77048051 | Msa0474200:intron | 30.0% |
AAAAGGGAGAAATTTAATCG+GGG | - | chr3_3:77048226-77048245 | Msa0474200:CDS | 30.0% | |
GGGAATAGTTCCAATTTAAT+TGG | - | chr3_3:77048694-77048713 | Msa0474200:intron | 30.0% | |
ACTTCTTCAAAAAAAGGACT+AGG | + | chr3_3:77049049-77049068 | None:intergenic | 30.0% | |
ATAGCATAAGCATATTAAGC+GGG | + | chr3_3:77049111-77049130 | None:intergenic | 30.0% | |
!! | TGCTATAGTTGATAGATCTA+TGG | - | chr3_3:77049125-77049144 | Msa0474200:CDS | 30.0% |
!! | GCTATAGTTGATAGATCTAT+GGG | - | chr3_3:77049126-77049145 | Msa0474200:CDS | 30.0% |
!! | CTATAGTTGATAGATCTATG+GGG | - | chr3_3:77049127-77049146 | Msa0474200:CDS | 30.0% |
TATGATTCACTTTCTAGACA+TGG | - | chr3_3:77049336-77049355 | Msa0474200:CDS | 30.0% | |
ATGATTCACTTTCTAGACAT+GGG | - | chr3_3:77049337-77049356 | Msa0474200:CDS | 30.0% | |
CTCTGTTTGGTAAAAAATAG+CGG | - | chr3_3:77049360-77049379 | Msa0474200:CDS | 30.0% | |
! | ACTAATAAGCTAGCTTAAAG+CGG | - | chr3_3:77049386-77049405 | Msa0474200:CDS | 30.0% |
TAGTATAAGCTAGCTGATAA+CGG | - | chr3_3:77049425-77049444 | Msa0474200:intron | 30.0% | |
AAGCTAGCTAATTGAATTTG+TGG | - | chr3_3:77049450-77049469 | Msa0474200:intron | 30.0% | |
CTAATTGAATTTGTGGTGTT+TGG | - | chr3_3:77049457-77049476 | Msa0474200:intron | 30.0% | |
ATGACTAAAAAAGACATGTC+TGG | + | chr3_3:77049687-77049706 | None:intergenic | 30.0% | |
! | GCAAATTAATTTGAAGCTAC+AGG | + | chr3_3:77049800-77049819 | None:intergenic | 30.0% |
ATGCATATAAACCTACATCA+TGG | - | chr3_3:77049824-77049843 | Msa0474200:intron | 30.0% | |
!! | TGTATGTAACTTAAGTTGAG+AGG | - | chr3_3:77049961-77049980 | Msa0474200:intron | 30.0% |
! | GCACTGATGATAAATGATTT+AGG | + | chr3_3:77050048-77050067 | None:intergenic | 30.0% |
! | TGGATATACCATGATACTTT+TGG | + | chr3_3:77050093-77050112 | None:intergenic | 30.0% |
! | AAAGTATCATGGTATATCCA+AGG | - | chr3_3:77050093-77050112 | Msa0474200:intron | 30.0% |
CTCTTGACAATGAGAAAATA+TGG | + | chr3_3:77050262-77050281 | None:intergenic | 30.0% | |
TACAGTATGAAGCAGAAATA+TGG | - | chr3_3:77050296-77050315 | Msa0474200:intron | 30.0% | |
AAGAAATGTAGCTGTGTTAT+AGG | - | chr3_3:77050345-77050364 | Msa0474200:CDS | 30.0% | |
AGAAATGTAGCTGTGTTATA+GGG | - | chr3_3:77050346-77050365 | Msa0474200:CDS | 30.0% | |
ACTACTGCAAATACAAAACT+GGG | + | chr3_3:77050550-77050569 | None:intergenic | 30.0% | |
TACTACTGCAAATACAAAAC+TGG | + | chr3_3:77050551-77050570 | None:intergenic | 30.0% | |
!! | CAATTTGATTGGCTTCATCT+TGG | - | chr3_3:77045364-77045383 | Msa0474200:three_prime_UTR | 35.0% |
AGTAACAGAGAGGTAAAAGA+GGG | + | chr3_3:77045502-77045521 | None:intergenic | 35.0% | |
! | AACTTTACGATTTCAGGTGT+CGG | - | chr3_3:77045547-77045566 | Msa0474200:three_prime_UTR | 35.0% |
GTTATCTTCTTCAACCTCTT+TGG | - | chr3_3:77045578-77045597 | Msa0474200:exon | 35.0% | |
!! | AGCTTTATTGCAGTGATTGT+TGG | - | chr3_3:77045692-77045711 | Msa0474200:CDS | 35.0% |
! | ATAATACTCAAAGCACCAAG+TGG | + | chr3_3:77045770-77045789 | None:intergenic | 35.0% |
GTTAGGTAACCAATGTTGTT+TGG | - | chr3_3:77045791-77045810 | Msa0474200:intron | 35.0% | |
CAGTGAAAACCAAACAACAT+TGG | + | chr3_3:77045803-77045822 | None:intergenic | 35.0% | |
ATTGGAACCAAACATACACT+TGG | - | chr3_3:77045989-77046008 | Msa0474200:intron | 35.0% | |
GGTGAGAAGTTACAGAAAAT+GGG | - | chr3_3:77046134-77046153 | Msa0474200:intron | 35.0% | |
! | GAAGTAAGAGACTTTTCTTG+GGG | + | chr3_3:77046215-77046234 | None:intergenic | 35.0% |
! | CAGAAGTAAGAGACTTTTCT+TGG | + | chr3_3:77046217-77046236 | None:intergenic | 35.0% |
! | TGTGCTAGAAATATGGCTTT+TGG | - | chr3_3:77046235-77046254 | Msa0474200:intron | 35.0% |
GTCAACAGCTAGAATGATAA+AGG | + | chr3_3:77046537-77046556 | None:intergenic | 35.0% | |
! | ACAAAATTCAATAGTGGAGG+TGG | - | chr3_3:77046555-77046574 | Msa0474200:intron | 35.0% |
GAGTGATACTGACCATATTA+AGG | + | chr3_3:77046760-77046779 | None:intergenic | 35.0% | |
!!! | AAAGCATTTTGGTTTGCAGT+GGG | - | chr3_3:77046858-77046877 | Msa0474200:intron | 35.0% |
! | CAAGATTATATCAGTTCTGG+TGG | + | chr3_3:77047087-77047106 | None:intergenic | 35.0% |
CAATTCAAAATTCGGGAATC+AGG | + | chr3_3:77047114-77047133 | None:intergenic | 35.0% | |
AGCAAGTTATGACAACTGAA+CGG | + | chr3_3:77047155-77047174 | None:intergenic | 35.0% | |
AATGGTGATAGACTCTTGTA+TGG | - | chr3_3:77047216-77047235 | Msa0474200:intron | 35.0% | |
AACCTTAAACATAATTGCGC+TGG | + | chr3_3:77047327-77047346 | None:intergenic | 35.0% | |
! | AGCGCAATTATGTTTAAGGT+TGG | - | chr3_3:77047326-77047345 | Msa0474200:intron | 35.0% |
! | GCATCTTAGGAGTAATCTTT+TGG | - | chr3_3:77047380-77047399 | Msa0474200:intron | 35.0% |
! | CTAAATGAGAAGAGTACAAC+AGG | + | chr3_3:77047433-77047452 | None:intergenic | 35.0% |
CTGTTGTACTCTTCTCATTT+AGG | - | chr3_3:77047431-77047450 | Msa0474200:intron | 35.0% | |
! | CTTCTCATTTAGGACTATTC+TGG | - | chr3_3:77047441-77047460 | Msa0474200:intron | 35.0% |
AAGTATAAGCAGCATTGCAT+CGG | - | chr3_3:77047467-77047486 | Msa0474200:intron | 35.0% | |
! | GGTTTCATCACTGTTTTATC+CGG | - | chr3_3:77047498-77047517 | Msa0474200:intron | 35.0% |
TAAGGACTTGCATCATCAAA+GGG | + | chr3_3:77047602-77047621 | None:intergenic | 35.0% | |
ATAAGGACTTGCATCATCAA+AGG | + | chr3_3:77047603-77047622 | None:intergenic | 35.0% | |
TTGGTTGCAGCTCAATAAAA+TGG | + | chr3_3:77047637-77047656 | None:intergenic | 35.0% | |
! | AGCATCAAATGTTTGTTGCA+TGG | + | chr3_3:77047760-77047779 | None:intergenic | 35.0% |
!! | GACATGTATTTTGAATCGGA+GGG | + | chr3_3:77047807-77047826 | None:intergenic | 35.0% |
!! | CTGCGACATGTATTTTGAAT+CGG | + | chr3_3:77047811-77047830 | None:intergenic | 35.0% |
AACGGAGGGAGTAAATTTAA+AGG | - | chr3_3:77048050-77048069 | Msa0474200:intron | 35.0% | |
ACGGAGGGAGTAAATTTAAA+GGG | - | chr3_3:77048051-77048070 | Msa0474200:intron | 35.0% | |
AGTAAATTTAAAGGGGGTCT+TGG | - | chr3_3:77048059-77048078 | Msa0474200:intron | 35.0% | |
AATGATATAAAGCTCCGTCA+TGG | + | chr3_3:77048167-77048186 | None:intergenic | 35.0% | |
!! | TGTATCGTTCGATCACTTTT+TGG | - | chr3_3:77048300-77048319 | Msa0474200:CDS | 35.0% |
ACTGTAGAGAGATTAAACAG+AGG | - | chr3_3:77048629-77048648 | Msa0474200:intron | 35.0% | |
AGATTAAACAGAGGTAGTGT+GGG | - | chr3_3:77048638-77048657 | Msa0474200:intron | 35.0% | |
AACAAAGATTAGGCTTCTGA+TGG | - | chr3_3:77048843-77048862 | Msa0474200:intron | 35.0% | |
TTGGTACAACGACAAGTATT+CGG | + | chr3_3:77048880-77048899 | None:intergenic | 35.0% | |
ACTAAGTAGCCTACTTTCTT+TGG | + | chr3_3:77048899-77048918 | None:intergenic | 35.0% | |
GAACATTCATCAATCAGTAC+AGG | + | chr3_3:77048954-77048973 | None:intergenic | 35.0% | |
! | ATGTTCCTTTTATGTCGACA+AGG | - | chr3_3:77048968-77048987 | Msa0474200:intron | 35.0% |
! | TGTTCCTTTTATGTCGACAA+GGG | - | chr3_3:77048969-77048988 | Msa0474200:intron | 35.0% |
TAAAGTGAACCAAGCTTTCT+AGG | - | chr3_3:77049210-77049229 | Msa0474200:intron | 35.0% | |
TTAACTCAACCTAGAAAGCT+TGG | + | chr3_3:77049222-77049241 | None:intergenic | 35.0% | |
GTCTTTAATCGGAAAAGTGA+TGG | + | chr3_3:77049297-77049316 | None:intergenic | 35.0% | |
AGAAAGTGAATCATAGAAGC+TGG | + | chr3_3:77049331-77049350 | None:intergenic | 35.0% | |
TAAAGCGGATGAACTTATAG+CGG | - | chr3_3:77049401-77049420 | Msa0474200:intron | 35.0% | |
! | TTCTCACAGTTTGTTCAGAA+AGG | + | chr3_3:77050021-77050040 | None:intergenic | 35.0% |
!! | CATGATACTTTTGGAGACAA+GGG | + | chr3_3:77050084-77050103 | None:intergenic | 35.0% |
ATCACTTGAAATGATCTTGC+TGG | + | chr3_3:77050182-77050201 | None:intergenic | 35.0% | |
ATCCATTCATTGAGTTAGCA+GGG | - | chr3_3:77050236-77050255 | Msa0474200:intron | 35.0% | |
TCTCATTGTCAAGAGCAATT+CGG | - | chr3_3:77050267-77050286 | Msa0474200:intron | 35.0% | |
TCTTGCTAAACCAAATGGAT+GGG | + | chr3_3:77050386-77050405 | None:intergenic | 35.0% | |
GAATCTCTTGCTAAACCAAA+TGG | + | chr3_3:77050391-77050410 | None:intergenic | 35.0% | |
! | GATAGAACCCAAGCTTTAAT+TGG | + | chr3_3:77050500-77050519 | None:intergenic | 35.0% |
! | GGTTCTATCATCTGAAACTA+AGG | - | chr3_3:77050511-77050530 | Msa0474200:five_prime_UTR | 35.0% |
! | TCTATCATCTGAAACTAAGG+AGG | - | chr3_3:77050514-77050533 | Msa0474200:five_prime_UTR | 35.0% |
!! | ACAGTTGTTACGACTTGGTT+TGG | + | chr3_3:77045133-77045152 | None:intergenic | 40.0% |
ATTAATTGTGCAGTGGGGTT+GGG | + | chr3_3:77045156-77045175 | None:intergenic | 40.0% | |
TATTAATTGTGCAGTGGGGT+TGG | + | chr3_3:77045157-77045176 | None:intergenic | 40.0% | |
TACACCTCCAGCAATTTGAT+TGG | - | chr3_3:77045353-77045372 | Msa0474200:three_prime_UTR | 40.0% | |
GATGAAGCCAATCAAATTGC+TGG | + | chr3_3:77045363-77045382 | None:intergenic | 40.0% | |
AAAAAAGGTCTTCAACGTGC+CGG | - | chr3_3:77045431-77045450 | Msa0474200:three_prime_UTR | 40.0% | |
! | AAGTGAGTTGACTTACTAGC+AGG | + | chr3_3:77045470-77045489 | None:intergenic | 40.0% |
CAGTAACAGAGAGGTAAAAG+AGG | + | chr3_3:77045503-77045522 | None:intergenic | 40.0% | |
TAACGGTAACAGTAACAGAG+AGG | + | chr3_3:77045512-77045531 | None:intergenic | 40.0% | |
ATCTTCTTCAACCTCTTTGG+TGG | - | chr3_3:77045581-77045600 | Msa0474200:exon | 40.0% | |
CGAGAATCCAAGTGTATGTT+TGG | + | chr3_3:77045999-77046018 | None:intergenic | 40.0% | |
GGGTGAGAAGTTACAGAAAA+TGG | - | chr3_3:77046133-77046152 | Msa0474200:intron | 40.0% | |
TTACAGAAAATGGGCATGCT+TGG | - | chr3_3:77046143-77046162 | Msa0474200:intron | 40.0% | |
TACAGAAAATGGGCATGCTT+GGG | - | chr3_3:77046144-77046163 | Msa0474200:intron | 40.0% | |
ATTTCTCTTGTACACAGCCT+CGG | - | chr3_3:77046381-77046400 | Msa0474200:intron | 40.0% | |
! | ATATTAGTTTGGCCATAGCG+AGG | + | chr3_3:77046445-77046464 | None:intergenic | 40.0% |
! | ACTGGTAATGATGCAGGAAA+TGG | + | chr3_3:77046729-77046748 | None:intergenic | 40.0% |
!!! | GAAAGCATTTTGGTTTGCAG+TGG | - | chr3_3:77046857-77046876 | Msa0474200:intron | 40.0% |
TAAGGCAGTAGCTAGAAAAG+TGG | + | chr3_3:77046911-77046930 | None:intergenic | 40.0% | |
! | TTGGATGTTATTTGGACGAG+AGG | + | chr3_3:77047039-77047058 | None:intergenic | 40.0% |
CAACTGAGCCAATCATTACT+TGG | + | chr3_3:77047058-77047077 | None:intergenic | 40.0% | |
! | TAATGATTGGCTCAGTTGAC+TGG | - | chr3_3:77047060-77047079 | Msa0474200:intron | 40.0% |
! | TTTCTGGGAATCTCTGATCT+GGG | - | chr3_3:77047182-77047201 | Msa0474200:intron | 40.0% |
GTGATAGACTCTTGTATGGT+TGG | - | chr3_3:77047220-77047239 | Msa0474200:intron | 40.0% | |
GTGAACAAGGCATAGTAGAT+TGG | + | chr3_3:77047287-77047306 | None:intergenic | 40.0% | |
AGCCAGCGCAATTATGTTTA+AGG | - | chr3_3:77047322-77047341 | Msa0474200:intron | 40.0% | |
ACTGTGCAATACAGTTGTTC+CGG | + | chr3_3:77047520-77047539 | None:intergenic | 40.0% | |
!! | CGACATGTATTTTGAATCGG+AGG | + | chr3_3:77047808-77047827 | None:intergenic | 40.0% |
TAACGGTCAAAGTTGTGCAT+TGG | + | chr3_3:77047852-77047871 | None:intergenic | 40.0% | |
!!! | TGACATGCATTTTGAAACGG+AGG | - | chr3_3:77048035-77048054 | Msa0474200:intron | 40.0% |
!!! | GACATGCATTTTGAAACGGA+GGG | - | chr3_3:77048036-77048055 | Msa0474200:intron | 40.0% |
CGGAGGGAGTAAATTTAAAG+GGG | - | chr3_3:77048052-77048071 | Msa0474200:intron | 40.0% | |
GGAGGGAGTAAATTTAAAGG+GGG | - | chr3_3:77048053-77048072 | Msa0474200:intron | 40.0% | |
TATGTGACCTCGTAGTTACA+TGG | + | chr3_3:77048105-77048124 | None:intergenic | 40.0% | |
AACTACGAGGTCACATATAC+CGG | - | chr3_3:77048108-77048127 | Msa0474200:intron | 40.0% | |
CACATATACCGGTCTACAAT+TGG | - | chr3_3:77048119-77048138 | Msa0474200:intron | 40.0% | |
TCTCTGCTCATTCACTAATG+GGG | + | chr3_3:77048527-77048546 | None:intergenic | 40.0% | |
CTCTCTGCTCATTCACTAAT+GGG | + | chr3_3:77048528-77048547 | None:intergenic | 40.0% | |
TCTCTCTGCTCATTCACTAA+TGG | + | chr3_3:77048529-77048548 | None:intergenic | 40.0% | |
AAGAGCAAAGAAACTGAGCA+TGG | - | chr3_3:77048577-77048596 | Msa0474200:intron | 40.0% | |
GAGATTAAACAGAGGTAGTG+TGG | - | chr3_3:77048637-77048656 | Msa0474200:intron | 40.0% | |
CAAAACCCTAGAACAGAAAG+CGG | - | chr3_3:77048729-77048748 | Msa0474200:intron | 40.0% | |
CGGTTCACCCTGTAATATTT+AGG | - | chr3_3:77048749-77048768 | Msa0474200:intron | 40.0% | |
ACAAGTATTCGGTACAAGAG+TGG | + | chr3_3:77048869-77048888 | None:intergenic | 40.0% | |
GTCGTTGTACCAAAGAAAGT+AGG | - | chr3_3:77048887-77048906 | Msa0474200:intron | 40.0% | |
AGATCCCTTGTCGACATAAA+AGG | + | chr3_3:77048976-77048995 | None:intergenic | 40.0% | |
!! | TATGGGGTTTAGTTCTTCAC+AGG | - | chr3_3:77049143-77049162 | Msa0474200:intron | 40.0% |
AAAGCGGATGAACTTATAGC+GGG | - | chr3_3:77049402-77049421 | Msa0474200:intron | 40.0% | |
GTGGTGTTTGGTCAAATTAG+TGG | - | chr3_3:77049469-77049488 | Msa0474200:intron | 40.0% | |
ATGTATCGTAAGGGTCTGTT+TGG | + | chr3_3:77049747-77049766 | None:intergenic | 40.0% | |
TCTGACATTCTCCATGATGT+AGG | + | chr3_3:77049838-77049857 | None:intergenic | 40.0% | |
TCAACATTCATGACACACTG+TGG | - | chr3_3:77049908-77049927 | Msa0474200:intron | 40.0% | |
! | CACAGTTTGTTCAGAAAGGA+AGG | + | chr3_3:77050017-77050036 | None:intergenic | 40.0% |
!! | CCATGATACTTTTGGAGACA+AGG | + | chr3_3:77050085-77050104 | None:intergenic | 40.0% |
!! | CCTTGTCTCCAAAAGTATCA+TGG | - | chr3_3:77050082-77050101 | Msa0474200:intron | 40.0% |
CAGTGAACAATGGAAACAGA+AGG | - | chr3_3:77050119-77050138 | Msa0474200:intron | 40.0% | |
CATCCATTCATTGAGTTAGC+AGG | - | chr3_3:77050235-77050254 | Msa0474200:intron | 40.0% | |
GTATGAAGCAGAAATATGGC+TGG | - | chr3_3:77050300-77050319 | Msa0474200:intron | 40.0% | |
CTCTTGCTAAACCAAATGGA+TGG | + | chr3_3:77050387-77050406 | None:intergenic | 40.0% | |
! | ATCATCTGAAACTAAGGAGG+TGG | - | chr3_3:77050517-77050536 | Msa0474200:five_prime_UTR | 40.0% |
AAGAAATACACGTGGGGAAA+GGG | + | chr3_3:77050639-77050658 | None:intergenic | 40.0% | |
AAAGAAATACACGTGGGGAA+AGG | + | chr3_3:77050640-77050659 | None:intergenic | 40.0% | |
GGCAAAAAGAAATACACGTG+GGG | + | chr3_3:77050645-77050664 | None:intergenic | 40.0% | |
GGGCAAAAAGAAATACACGT+GGG | + | chr3_3:77050646-77050665 | None:intergenic | 40.0% | |
TTGGGACAGTTGTTACGACT+TGG | + | chr3_3:77045138-77045157 | None:intergenic | 45.0% | |
GATTGGAACCCTAGCTAGAA+TGG | + | chr3_3:77045280-77045299 | None:intergenic | 45.0% | |
GAAGCCAATCAAATTGCTGG+AGG | + | chr3_3:77045360-77045379 | None:intergenic | 45.0% | |
! | TTCATCTTGGCCGTTGTTTC+CGG | - | chr3_3:77045377-77045396 | Msa0474200:three_prime_UTR | 45.0% |
!! | TTTACGATTTCAGGTGTCGG+AGG | - | chr3_3:77045550-77045569 | Msa0474200:three_prime_UTR | 45.0% |
! | CTTCAACCTCTTTGGTGGAT+CGG | - | chr3_3:77045586-77045605 | Msa0474200:CDS | 45.0% |
GGGTGTCTTCTATGCATTGT+CGG | - | chr3_3:77046164-77046183 | Msa0474200:intron | 45.0% | |
GGTGTCTTCTATGCATTGTC+GGG | - | chr3_3:77046165-77046184 | Msa0474200:intron | 45.0% | |
GCTGTGTACAAGAGAAATGC+TGG | + | chr3_3:77046379-77046398 | None:intergenic | 45.0% | |
GTCATGAGCGTAAAAGCGAT+TGG | - | chr3_3:77046629-77046648 | Msa0474200:intron | 45.0% | |
GTTATGACAACTGAACGGCA+TGG | + | chr3_3:77047150-77047169 | None:intergenic | 45.0% | |
! | GTTTCTGGGAATCTCTGATC+TGG | - | chr3_3:77047181-77047200 | Msa0474200:intron | 45.0% |
ATCTCTGATCTGGGTATCTG+TGG | - | chr3_3:77047191-77047210 | Msa0474200:intron | 45.0% | |
ATCTGGGTATCTGTGGTGAA+TGG | - | chr3_3:77047198-77047217 | Msa0474200:intron | 45.0% | |
AGGTAAGGCCTAATGCACTT+CGG | - | chr3_3:77047569-77047588 | Msa0474200:intron | 45.0% | |
TGACTGAGGACTAAGAGATG+GGG | + | chr3_3:77047682-77047701 | None:intergenic | 45.0% | |
CTGACTGAGGACTAAGAGAT+GGG | + | chr3_3:77047683-77047702 | None:intergenic | 45.0% | |
TCTGACTGAGGACTAAGAGA+TGG | + | chr3_3:77047684-77047703 | None:intergenic | 45.0% | |
GTTGCTACCATGTAACTACG+AGG | - | chr3_3:77048095-77048114 | Msa0474200:intron | 45.0% | |
TATAAAGCTCCGTCATGGTG+TGG | + | chr3_3:77048162-77048181 | None:intergenic | 45.0% | |
TTAAACAGAGGTAGTGTGGG+AGG | - | chr3_3:77048641-77048660 | Msa0474200:intron | 45.0% | |
GTGAACCGCTTTCTGTTCTA+GGG | + | chr3_3:77048737-77048756 | None:intergenic | 45.0% | |
TTCTAGACATGGGCTCTGTT+TGG | - | chr3_3:77049347-77049366 | Msa0474200:CDS | 45.0% | |
TGGAAACAGAAGGAAGACGA+TGG | - | chr3_3:77050129-77050148 | Msa0474200:intron | 45.0% | |
TCTCTGTGATCCCATCCATT+TGG | - | chr3_3:77050373-77050392 | Msa0474200:CDS | 45.0% | |
CACATTGTGTAGCAAGACAG+AGG | - | chr3_3:77050424-77050443 | Msa0474200:exon | 45.0% | |
TGGGGAAAGGGAAAGGAAAA+GGG | + | chr3_3:77050627-77050646 | None:intergenic | 45.0% | |
GGGGCAAAAAGAAATACACG+TGG | + | chr3_3:77050647-77050666 | None:intergenic | 45.0% | |
!!! | TTTTATGTTAATATATTTTT+CGG | - | chr3_3:77046786-77046805 | Msa0474200:intron | 5.0% |
!!! | TATTAAATTTTAATAGTTTT+TGG | + | chr3_3:77047656-77047675 | None:intergenic | 5.0% |
!! | GATGAAAGCGCCGGAAACAA+CGG | + | chr3_3:77045390-77045409 | None:intergenic | 50.0% |
! | GTTGTTTCCGGCGCTTTCAT+CGG | - | chr3_3:77045389-77045408 | Msa0474200:three_prime_UTR | 50.0% |
! | CTTCAACGTGCCGGTCTTAA+CGG | - | chr3_3:77045440-77045459 | Msa0474200:three_prime_UTR | 50.0% |
!! | ATTTCAGGTGTCGGAGGCTA+TGG | - | chr3_3:77045556-77045575 | Msa0474200:three_prime_UTR | 50.0% |
AGCATACATTTATGCGCCCG+CGG | - | chr3_3:77045733-77045752 | Msa0474200:intron | 50.0% | |
! | AAGTGGAGTAACAAGCACCG+CGG | + | chr3_3:77045753-77045772 | None:intergenic | 50.0% |
! | GAGACTTTTCTTGGGGTGCA+TGG | + | chr3_3:77046208-77046227 | None:intergenic | 50.0% |
!! | TGGCTTTTGGCTGTTCAACC+AGG | - | chr3_3:77046248-77046267 | Msa0474200:intron | 50.0% |
TTGTATTGTGCGCCTCGCTA+TGG | - | chr3_3:77046430-77046449 | Msa0474200:intron | 50.0% | |
TCTTGTATGGTTGGCATCGC+AGG | - | chr3_3:77047229-77047248 | Msa0474200:intron | 50.0% | |
AGCATTGCATCGGAGCTATG+TGG | - | chr3_3:77047477-77047496 | Msa0474200:intron | 50.0% | |
TCCTCCAGTCAGTACAGGTA+AGG | - | chr3_3:77047554-77047573 | Msa0474200:intron | 50.0% | |
! | TAGGCCTTACCTGTACTGAC+TGG | + | chr3_3:77047561-77047580 | None:intergenic | 50.0% |
GGTAAGGCCTAATGCACTTC+GGG | - | chr3_3:77047570-77047589 | Msa0474200:intron | 50.0% | |
GTAAGGCCTAATGCACTTCG+GGG | - | chr3_3:77047571-77047590 | Msa0474200:intron | 50.0% | |
! | GTGCATTGGCATGTGTGAAG+TGG | + | chr3_3:77047838-77047857 | None:intergenic | 50.0% |
GGTTCGGACCAATTGTAGAC+CGG | + | chr3_3:77048130-77048149 | None:intergenic | 50.0% | |
TTCCCTAGACCACACCATGA+CGG | - | chr3_3:77048150-77048169 | Msa0474200:intron | 50.0% | |
! | ACAAGAACGCGTGCAGCTTT+TGG | - | chr3_3:77048673-77048692 | Msa0474200:intron | 50.0% |
! | CAAGAACGCGTGCAGCTTTT+GGG | - | chr3_3:77048674-77048693 | Msa0474200:intron | 50.0% |
GGTGAACCGCTTTCTGTTCT+AGG | + | chr3_3:77048738-77048757 | None:intergenic | 50.0% | |
GGCCCTGCTAACTCAATGAA+TGG | + | chr3_3:77050241-77050260 | None:intergenic | 50.0% | |
GTGGGGAAAGGGAAAGGAAA+AGG | + | chr3_3:77050628-77050647 | None:intergenic | 50.0% | |
ATACACGTGGGGAAAGGGAA+AGG | + | chr3_3:77050634-77050653 | None:intergenic | 50.0% | |
!! | AGCAGGAGTGCCGTTAAGAC+CGG | + | chr3_3:77045453-77045472 | None:intergenic | 55.0% |
! | ACCTCTTTGGTGGATCGGCA+TGG | - | chr3_3:77045591-77045610 | Msa0474200:CDS | 55.0% |
ACCATGCCGATCCACCAAAG+AGG | + | chr3_3:77045595-77045614 | None:intergenic | 55.0% | |
! | AGTGGAGTAACAAGCACCGC+GGG | + | chr3_3:77045752-77045771 | None:intergenic | 55.0% |
! | GCGGTGCTTGTTACTCCACT+TGG | - | chr3_3:77045752-77045771 | Msa0474200:intron | 55.0% |
TGCATGGAGCACGATCTCAG+TGG | + | chr3_3:77046192-77046211 | None:intergenic | 55.0% | |
! | TATGCTGCTCCTGCTGACTG+AGG | - | chr3_3:77046271-77046290 | Msa0474200:intron | 55.0% |
! | CTCCTGCTGACTGAGGCTAT+TGG | - | chr3_3:77046278-77046297 | Msa0474200:intron | 55.0% |
CACCAATAGCCTCAGTCAGC+AGG | + | chr3_3:77046283-77046302 | None:intergenic | 55.0% | |
! | CTGCTGACTGAGGCTATTGG+TGG | - | chr3_3:77046281-77046300 | Msa0474200:intron | 55.0% |
ATGGTTGGCATCGCAGGCAT+TGG | - | chr3_3:77047235-77047254 | Msa0474200:intron | 55.0% | |
GACTGGAGGATCTGGTACTC+TGG | + | chr3_3:77047544-77047563 | None:intergenic | 55.0% | |
!! | CCTGTACTGACTGGAGGATC+TGG | + | chr3_3:77047552-77047571 | None:intergenic | 55.0% |
CCAGATCCTCCAGTCAGTAC+AGG | - | chr3_3:77047549-77047568 | Msa0474200:intron | 55.0% | |
!! | GCCTTACCTGTACTGACTGG+AGG | + | chr3_3:77047558-77047577 | None:intergenic | 55.0% |
GATCCTCCCCGAAGTGCATT+AGG | + | chr3_3:77047580-77047599 | None:intergenic | 55.0% | |
GGTGTGGTCTAGGGAAGGTT+CGG | + | chr3_3:77048146-77048165 | None:intergenic | 55.0% | |
GTCATGGTGTGGTCTAGGGA+AGG | + | chr3_3:77048151-77048170 | None:intergenic | 55.0% | |
CTCCGTCATGGTGTGGTCTA+GGG | + | chr3_3:77048155-77048174 | None:intergenic | 55.0% | |
GTCAGCAGGAGCAGCATACC+TGG | + | chr3_3:77046269-77046288 | None:intergenic | 60.0% | |
CACAGCCTCGGCAATAGCTG+TGG | - | chr3_3:77046393-77046412 | Msa0474200:intron | 60.0% | |
GAACGCCACAGCTATTGCCG+AGG | + | chr3_3:77046401-77046420 | None:intergenic | 60.0% | |
AGGCCTAATGCACTTCGGGG+AGG | - | chr3_3:77047574-77047593 | Msa0474200:intron | 60.0% | |
GCTCCGTCATGGTGTGGTCT+AGG | + | chr3_3:77048156-77048175 | None:intergenic | 60.0% | |
! | GCTGGAGCCGATGAAAGCGC+CGG | + | chr3_3:77045399-77045418 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 77045118 | 77050668 | 77045118 | ID=Msa0474200;Name=Msa0474200 |
chr3_3 | mRNA | 77045118 | 77050668 | 77045118 | ID=Msa0474200-mRNA-1;Parent=Msa0474200;Name=Msa0474200-mRNA-1;_AED=0.09;_eAED=0.09;_QI=232|1|1|1|0.88|0.8|10|424|346 |
chr3_3 | exon | 77045118 | 77045485 | 77045118 | ID=Msa0474200-mRNA-1:exon:20438;Parent=Msa0474200-mRNA-1 |
chr3_3 | exon | 77045530 | 77045716 | 77045530 | ID=Msa0474200-mRNA-1:exon:20437;Parent=Msa0474200-mRNA-1 |
chr3_3 | exon | 77048216 | 77048333 | 77048216 | ID=Msa0474200-mRNA-1:exon:20436;Parent=Msa0474200-mRNA-1 |
chr3_3 | exon | 77048443 | 77048535 | 77048443 | ID=Msa0474200-mRNA-1:exon:20435;Parent=Msa0474200-mRNA-1 |
chr3_3 | exon | 77049020 | 77049157 | 77049020 | ID=Msa0474200-mRNA-1:exon:20434;Parent=Msa0474200-mRNA-1 |
chr3_3 | exon | 77049279 | 77049406 | 77049279 | ID=Msa0474200-mRNA-1:exon:20433;Parent=Msa0474200-mRNA-1 |
chr3_3 | exon | 77049517 | 77049677 | 77049517 | ID=Msa0474200-mRNA-1:exon:20432;Parent=Msa0474200-mRNA-1 |
chr3_3 | exon | 77049991 | 77050081 | 77049991 | ID=Msa0474200-mRNA-1:exon:20431;Parent=Msa0474200-mRNA-1 |
chr3_3 | exon | 77050167 | 77050223 | 77050167 | ID=Msa0474200-mRNA-1:exon:20430;Parent=Msa0474200-mRNA-1 |
chr3_3 | exon | 77050313 | 77050668 | 77050313 | ID=Msa0474200-mRNA-1:exon:20429;Parent=Msa0474200-mRNA-1 |
chr3_3 | five_prime_UTR | 77050437 | 77050668 | 77050437 | ID=Msa0474200-mRNA-1:five_prime_utr;Parent=Msa0474200-mRNA-1 |
chr3_3 | CDS | 77050313 | 77050436 | 77050313 | ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1 |
chr3_3 | CDS | 77050167 | 77050223 | 77050167 | ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1 |
chr3_3 | CDS | 77049991 | 77050081 | 77049991 | ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1 |
chr3_3 | CDS | 77049517 | 77049677 | 77049517 | ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1 |
chr3_3 | CDS | 77049279 | 77049406 | 77049279 | ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1 |
chr3_3 | CDS | 77049020 | 77049157 | 77049020 | ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1 |
chr3_3 | CDS | 77048443 | 77048535 | 77048443 | ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1 |
chr3_3 | CDS | 77048216 | 77048333 | 77048216 | ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1 |
chr3_3 | CDS | 77045586 | 77045716 | 77045586 | ID=Msa0474200-mRNA-1:cds;Parent=Msa0474200-mRNA-1 |
chr3_3 | three_prime_UTR | 77045530 | 77045585 | 77045530 | ID=Msa0474200-mRNA-1:three_prime_utr;Parent=Msa0474200-mRNA-1 |
chr3_3 | three_prime_UTR | 77045118 | 77045485 | 77045118 | ID=Msa0474200-mRNA-1:three_prime_utr;Parent=Msa0474200-mRNA-1 |
Gene Sequence |
Protein sequence |