Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361560 | XP_013461608.1 | 96.243 | 346 | 1 | 1 | 1 | 334 | 1 | 346 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361560 | sp|Q8GYS1|NIPA7_ARATH | 63.729 | 295 | 95 | 1 | 4 | 286 | 3 | 297 | 1.49e-132 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361560 | A0A072V2P7 | 96.243 | 346 | 1 | 1 | 1 | 334 | 1 | 346 | 0.0 | 665 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0140700 | Msa1361560 | 0.859305 | 4.535012e-63 | -8.615850e-47 |
| Msa0474200 | Msa1361560 | 0.881882 | 1.658710e-70 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361560 | MtrunA17_Chr3g0130971 | 96.243 | 346 | 1 | 1 | 1 | 334 | 1 | 346 | 0.0 | 665 |
| Msa1361560 | MtrunA17_Chr8g0385101 | 78.198 | 344 | 63 | 1 | 3 | 334 | 2 | 345 | 0.0 | 555 |
| Msa1361560 | MtrunA17_Chr4g0037541 | 59.451 | 328 | 114 | 2 | 1 | 316 | 1 | 321 | 6.40e-137 | 392 |
| Msa1361560 | MtrunA17_Chr8g0378181 | 58.703 | 293 | 109 | 1 | 3 | 283 | 4 | 296 | 7.42e-123 | 355 |
| Msa1361560 | MtrunA17_Chr5g0442091 | 53.179 | 346 | 142 | 6 | 3 | 330 | 4 | 347 | 3.03e-117 | 342 |
| Msa1361560 | MtrunA17_Chr2g0277341 | 58.703 | 293 | 109 | 1 | 3 | 283 | 14 | 306 | 4.21e-116 | 339 |
| Msa1361560 | MtrunA17_Chr3g0121551 | 53.416 | 322 | 136 | 3 | 3 | 310 | 4 | 325 | 1.02e-112 | 330 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361560 | AT4G38730.1 | 63.729 | 295 | 95 | 1 | 4 | 286 | 3 | 297 | 1.51e-133 | 383 |
| Msa1361560 | AT2G21120.1 | 61.981 | 313 | 101 | 2 | 4 | 304 | 3 | 309 | 1.66e-133 | 383 |
| Msa1361560 | AT1G71900.1 | 56.156 | 333 | 121 | 4 | 3 | 323 | 16 | 335 | 2.95e-129 | 373 |
| Msa1361560 | AT1G71900.2 | 60.410 | 293 | 104 | 1 | 3 | 283 | 16 | 308 | 1.56e-127 | 369 |
| Msa1361560 | AT1G34470.1 | 59.727 | 293 | 106 | 1 | 3 | 283 | 16 | 308 | 3.00e-125 | 363 |
| Msa1361560 | AT4G09640.1 | 55.490 | 337 | 137 | 2 | 3 | 326 | 16 | 352 | 4.22e-115 | 338 |
| Msa1361560 | AT4G13800.5 | 58.065 | 310 | 118 | 1 | 3 | 300 | 5 | 314 | 2.28e-114 | 335 |
| Msa1361560 | AT4G13800.1 | 58.065 | 310 | 118 | 1 | 3 | 300 | 5 | 314 | 2.28e-114 | 335 |
| Msa1361560 | AT4G13800.8 | 58.065 | 310 | 118 | 1 | 3 | 300 | 5 | 314 | 2.28e-114 | 335 |
| Msa1361560 | AT4G13800.10 | 58.065 | 310 | 118 | 1 | 3 | 300 | 5 | 314 | 2.28e-114 | 335 |
| Msa1361560 | AT3G23870.1 | 61.168 | 291 | 101 | 1 | 5 | 283 | 7 | 297 | 7.17e-108 | 318 |
| Msa1361560 | AT3G23870.3 | 61.168 | 291 | 101 | 1 | 5 | 283 | 7 | 297 | 7.17e-108 | 318 |
| Msa1361560 | AT3G23870.2 | 61.168 | 291 | 101 | 1 | 5 | 283 | 7 | 297 | 7.17e-108 | 318 |
| Msa1361560 | AT3G23870.4 | 61.168 | 291 | 101 | 1 | 5 | 283 | 7 | 297 | 7.17e-108 | 318 |
| Msa1361560 | AT4G13800.6 | 60.687 | 262 | 91 | 1 | 3 | 252 | 5 | 266 | 1.29e-99 | 295 |
| Msa1361560 | AT4G13800.2 | 60.687 | 262 | 91 | 1 | 3 | 252 | 5 | 266 | 1.29e-99 | 295 |
| Msa1361560 | AT3G23870.5 | 63.107 | 206 | 76 | 0 | 78 | 283 | 12 | 217 | 1.57e-90 | 271 |
| Msa1361560 | AT4G13800.9 | 58.696 | 230 | 83 | 1 | 3 | 220 | 5 | 234 | 1.51e-80 | 245 |
| Msa1361560 | AT4G13800.7 | 58.696 | 230 | 83 | 1 | 3 | 220 | 5 | 234 | 1.51e-80 | 245 |
| Msa1361560 | AT4G13800.4 | 58.696 | 230 | 83 | 1 | 3 | 220 | 5 | 234 | 1.51e-80 | 245 |
| Msa1361560 | AT4G13800.3 | 58.696 | 230 | 83 | 1 | 3 | 220 | 5 | 234 | 1.51e-80 | 245 |
Find 118 sgRNAs with CRISPR-Local
Find 345 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTCATCTTGGCCGTTGTTTC+TGG | 0.090786 | tig0017534:-23304 | Msa1361560:CDS |
| AGCCAGCGCAATTATGTTTA+AGG | 0.107560 | tig0017534:-21341 | Msa1361560:intron |
| GGATAATCTTAATTAAATTA+AGG | 0.172289 | tig0017534:+18505 | None:intergenic |
| GATGAAGAAGAATTTGATTT+TGG | 0.196779 | tig0017534:+23382 | None:intergenic |
| GATAGAACCCAAGCTTTAAT+TGG | 0.204593 | tig0017534:+18166 | None:intergenic |
| GGGTGAGAAGTTACAGAAAA+TGG | 0.211943 | tig0017534:-22530 | Msa1361560:CDS |
| ATTGGAATATGCTCCATAAT+TGG | 0.219095 | tig0017534:-22188 | Msa1361560:CDS |
| GTTATCTTCTTCAACCTCTT+TGG | 0.228989 | tig0017534:-23104 | Msa1361560:CDS |
| TGGATATACCATGATACTTT+TGG | 0.233104 | tig0017534:+18573 | None:intergenic |
| GAGAAATGTAGCTGTGTTAT+AGG | 0.234761 | tig0017534:-18318 | Msa1361560:three_prime_UTR |
| TACTACTGCAAATACAAAAC+TGG | 0.237363 | tig0017534:+18115 | None:intergenic |
| CTTCTCATTTAGGACTATTC+TGG | 0.239931 | tig0017534:-21222 | Msa1361560:intron |
| TTACTTCTGTGCTAGAAATA+TGG | 0.262020 | tig0017534:-22435 | Msa1361560:CDS |
| GCTATTAAACTTACATTAGA+TGG | 0.277983 | tig0017534:-22007 | Msa1361560:CDS |
| CAGTTTAAATTACCTTAATA+TGG | 0.300539 | tig0017534:-21918 | Msa1361560:intron |
| TGTGCTAGAAATATGGCTTT+TGG | 0.313475 | tig0017534:-22428 | Msa1361560:CDS |
| TACAGTCAATGATCCAATTA+TGG | 0.326528 | tig0017534:+22175 | None:intergenic |
| AGAAATGTAGCTGTGTTATA+GGG | 0.338574 | tig0017534:-18317 | Msa1361560:three_prime_UTR |
| TACAGTATGAAGCAGAAATA+TGG | 0.348057 | tig0017534:-18367 | Msa1361560:intron |
| AGCTTTATTGCAGTGATTGT+TGG | 0.355902 | tig0017534:-22995 | Msa1361560:intron |
| GTCTTTATTAATTGTGCAGT+GGG | 0.357367 | tig0017534:+23520 | None:intergenic |
| CATATTAAGGTAATTTAAAC+TGG | 0.357572 | tig0017534:+21919 | None:intergenic |
| ATCACTTGAAATGATCTTGC+TGG | 0.376053 | tig0017534:+18484 | None:intergenic |
| GAGTGATACTGACCATATTA+AGG | 0.377874 | tig0017534:+21906 | None:intergenic |
| ATTAATTGTGCAGTGGGGTT+GGG | 0.381403 | tig0017534:+23526 | None:intergenic |
| GATAATCTTAATTAAATTAA+GGG | 0.383033 | tig0017534:+18506 | None:intergenic |
| ATGAAGTAGAAAGTTTAAAC+TGG | 0.384786 | tig0017534:+23459 | None:intergenic |
| TGTAAACGAAGATATTAGTT+TGG | 0.387230 | tig0017534:+22210 | None:intergenic |
| TATTAATTGTGCAGTGGGGT+TGG | 0.389302 | tig0017534:+23525 | None:intergenic |
| CTTATAATTCCATTCTAGCT+AGG | 0.397260 | tig0017534:-23413 | Msa1361560:five_prime_UTR |
| GATGAAGCCAATCAAATTGC+TGG | 0.399411 | tig0017534:+23321 | None:intergenic |
| ATCATATCCAATTAAAGCTT+GGG | 0.401106 | tig0017534:-18173 | Msa1361560:three_prime_UTR |
| CATCCATTCATTGAGTTAGC+AGG | 0.403261 | tig0017534:-18428 | Msa1361560:intron |
| TCTCTGTGATCCCATCCATT+TGG | 0.406675 | tig0017534:-18290 | Msa1361560:three_prime_UTR |
| GAATCTCTTGCTAAACCAAA+TGG | 0.406968 | tig0017534:+18275 | None:intergenic |
| CAATTTGATTGGCTTCATCT+TGG | 0.410727 | tig0017534:-23317 | Msa1361560:CDS |
| ATCTTCTTCAACCTCTTTGG+TGG | 0.411998 | tig0017534:-23101 | Msa1361560:CDS |
| GATTGGAACCCTAGCTAGAA+TGG | 0.413862 | tig0017534:+23404 | None:intergenic |
| TACACCTCCAGCAATTTGAT+TGG | 0.420844 | tig0017534:-23328 | Msa1361560:CDS |
| GTGATATTGAAATCTTAAAC+TGG | 0.423429 | tig0017534:-18466 | Msa1361560:exon |
| CTTCAACCTCTTTGGTGGAT+CGG | 0.423526 | tig0017534:-23096 | Msa1361560:CDS |
| CTTCAACGTGCCGGTCTTAA+CGG | 0.423933 | tig0017534:-23241 | Msa1361560:CDS |
| GGGTGTCTTCTATGCATTGT+CGG | 0.427769 | tig0017534:-22499 | Msa1361560:CDS |
| GTATTGGCTCATTTCATGTT+GGG | 0.430211 | tig0017534:-22550 | Msa1361560:CDS |
| ACAGTTGTTACGACTTGGTT+TGG | 0.431976 | tig0017534:+23549 | None:intergenic |
| TCCATTGTTCACTGTTGCCT+TGG | 0.432868 | tig0017534:+18553 | None:intergenic |
| ACTAATATCTTCGTTTACAT+TGG | 0.436105 | tig0017534:-22206 | Msa1361560:CDS |
| GGTTCTATCATCTGAAACTA+AGG | 0.436474 | tig0017534:-18152 | Msa1361560:three_prime_UTR |
| CCTGTACTGACTGGAGGATC+TGG | 0.438220 | tig0017534:+21114 | None:intergenic |
| GTTTCAGGTGTCGGAGGCTA+TGG | 0.439832 | tig0017534:-23126 | Msa1361560:intron |
| ATGGGGAAAGGGAAAGGAAA+AGG | 0.443867 | tig0017534:+18038 | None:intergenic |
| ACTGTGCAATACAGTTGTTC+CGG | 0.443934 | tig0017534:+21146 | None:intergenic |
| TGTTACGACTTGGTTTGGTT+TGG | 0.444145 | tig0017534:+23554 | None:intergenic |
| TGGCTAGTGTAGTGCTGTAT+TGG | 0.446403 | tig0017534:-22566 | Msa1361560:intron |
| ACTGGTAATGATGCAGGAAA+TGG | 0.447294 | tig0017534:+21937 | None:intergenic |
| TATCATATCCAATTAAAGCT+TGG | 0.448724 | tig0017534:-18174 | Msa1361560:three_prime_UTR |
| TTACAGAAAATGGGCATGCT+TGG | 0.455638 | tig0017534:-22520 | Msa1361560:CDS |
| TTGTATTGTGCGCCTCGCTA+TGG | 0.458334 | tig0017534:-22233 | Msa1361560:CDS |
| AAGAAATACACATGGGGAAA+GGG | 0.462342 | tig0017534:+18027 | None:intergenic |
| TGTATTGGCTCATTTCATGT+TGG | 0.463222 | tig0017534:-22551 | Msa1361560:CDS |
| ATGTCTGAAAGTAAACAAAC+TGG | 0.466202 | tig0017534:+21978 | None:intergenic |
| ATACAACAACTAAACAAAAC+AGG | 0.470857 | tig0017534:+18080 | None:intergenic |
| TACAGAAAATGGGCATGCTT+GGG | 0.471819 | tig0017534:-22519 | Msa1361560:CDS |
| GGTGTCTTCTATGCATTGTC+GGG | 0.471983 | tig0017534:-22498 | Msa1361560:CDS |
| GTGAACAAGGCATAGTAGAT+TGG | 0.482283 | tig0017534:+21379 | None:intergenic |
| ATTTAAACTGGTAATGATGC+AGG | 0.482970 | tig0017534:+21931 | None:intergenic |
| TTATAATTCCATTCTAGCTA+GGG | 0.499028 | tig0017534:-23412 | Msa1361560:five_prime_UTR |
| GTTGTTTCTGGCGCTTTCAT+CGG | 0.499947 | tig0017534:-23292 | Msa1361560:CDS |
| GACTGGAGGATCTGGTACTC+TGG | 0.501439 | tig0017534:+21122 | None:intergenic |
| GGCCCTGCTAACTCAATGAA+TGG | 0.503144 | tig0017534:+18425 | None:intergenic |
| AGTAGAAAGTTTAAACTGGA+TGG | 0.505514 | tig0017534:+23463 | None:intergenic |
| AAAGAAATACACATGGGGAA+AGG | 0.506414 | tig0017534:+18026 | None:intergenic |
| GGTGAGAAGTTACAGAAAAT+GGG | 0.507262 | tig0017534:-22529 | Msa1361560:CDS |
| TGTCTTTATTAATTGTGCAG+TGG | 0.511754 | tig0017534:+23519 | None:intergenic |
| CTCTTGCTAAACCAAATGGA+TGG | 0.517969 | tig0017534:+18279 | None:intergenic |
| ATCCATTCATTGAGTTAGCA+GGG | 0.520879 | tig0017534:-18427 | Msa1361560:intron |
| TTGGGACAGTTGTTACGACT+TGG | 0.531995 | tig0017534:+23544 | None:intergenic |
| CCTTGTCTCCAAAAGTATCA+TGG | 0.537055 | tig0017534:-18581 | Msa1361560:CDS |
| CCAGATCCTCCAGTCAGTAC+AGG | 0.543909 | tig0017534:-21114 | Msa1361560:intron |
| AACCTTAAACATAATTGCGC+TGG | 0.546072 | tig0017534:+21339 | None:intergenic |
| ATACACATGGGGAAAGGGAA+AGG | 0.546189 | tig0017534:+18032 | None:intergenic |
| CAATTAATAAAGACAGAAAG+AGG | 0.547116 | tig0017534:-23511 | Msa1361560:five_prime_UTR |
| ACCTCTTTGGTGGATCGGCA+TGG | 0.547620 | tig0017534:-23091 | Msa1361560:CDS |
| AGCAGGAGTGCCGTTAAGAC+CGG | 0.549846 | tig0017534:+23231 | None:intergenic |
| ATTTCTCTTGTACACAGCCT+CGG | 0.549853 | tig0017534:-22282 | Msa1361560:CDS |
| TGGGGAAAGGGAAAGGAAAA+GGG | 0.554246 | tig0017534:+18039 | None:intergenic |
| ATCATCTGAAACTAAGGAGG+TGG | 0.561883 | tig0017534:-18146 | Msa1361560:three_prime_UTR |
| CTTTCCGTTTCAGGTGTCGG+AGG | 0.567532 | tig0017534:-23132 | Msa1361560:intron |
| TCTTGCTAAACCAAATGGAT+GGG | 0.569603 | tig0017534:+18280 | None:intergenic |
| GATGAAAGCGCCAGAAACAA+CGG | 0.569818 | tig0017534:+23294 | None:intergenic |
| AAGTATAAGCAGCATTGCAT+CGG | 0.570033 | tig0017534:-21196 | Msa1361560:CDS |
| GTCATGAGCGTAAAAGCGAT+TGG | 0.570641 | tig0017534:-22034 | Msa1361560:CDS |
| AAAGTATCATGGTATATCCA+AGG | 0.578962 | tig0017534:-18570 | Msa1361560:CDS |
| GTTTAAACTGGATGGAAATG+TGG | 0.579826 | tig0017534:+23471 | None:intergenic |
| ATAATCTTAATTAAATTAAG+GGG | 0.580054 | tig0017534:+18507 | None:intergenic |
| GTATGAAGCAGAAATATGGC+TGG | 0.583248 | tig0017534:-18363 | Msa1361560:three_prime_UTR |
| TATTGAAATCTTAAACTGGT+AGG | 0.585003 | tig0017534:-18462 | Msa1361560:three_prime_UTR |
| ACTACTGCAAATACAAAACT+GGG | 0.588563 | tig0017534:+18116 | None:intergenic |
| TAGGCCTTACCTGTACTGAC+TGG | 0.594862 | tig0017534:+21105 | None:intergenic |
| CACAGCCTCGGCAATAGCTG+TGG | 0.597556 | tig0017534:-22270 | Msa1361560:CDS |
| ATCTTAATTAAATTAAGGGG+CGG | 0.598280 | tig0017534:+18510 | None:intergenic |
| AGTTTGTTTACTTTCAGACA+TGG | 0.604205 | tig0017534:-21976 | Msa1361560:CDS |
| TGTAGCATACATTTATGCGC+CGG | 0.609894 | tig0017534:-22957 | Msa1361560:CDS |
| TCCAAGGCAACAGTGAACAA+TGG | 0.615061 | tig0017534:-18554 | Msa1361560:CDS |
| AGCATTGCATCGGAGCTATG+TGG | 0.620149 | tig0017534:-21186 | Msa1361560:CDS |
| CAGTGAACAATGGAAACAGA+AGG | 0.632620 | tig0017534:-18544 | Msa1361560:CDS |
| GCCTTACCTGTACTGACTGG+AGG | 0.634907 | tig0017534:+21108 | None:intergenic |
| TATTGTAAAAGATGTGAACA+AGG | 0.639922 | tig0017534:+21366 | None:intergenic |
| ATATTAGTTTGGCCATAGCG+AGG | 0.640349 | tig0017534:+22221 | None:intergenic |
| ACCATGCCGATCCACCAAAG+AGG | 0.641294 | tig0017534:+23090 | None:intergenic |
| TCTATCATCTGAAACTAAGG+AGG | 0.648641 | tig0017534:-18149 | Msa1361560:three_prime_UTR |
| AGCATACATTTATGCGCCGG+CGG | 0.652080 | tig0017534:-22954 | Msa1361560:intron |
| GAAGCCAATCAAATTGCTGG+AGG | 0.663080 | tig0017534:+23324 | None:intergenic |
| CACATTGTGTAGCAAGACAG+AGG | 0.670035 | tig0017534:-18239 | Msa1361560:three_prime_UTR |
| TGGAAACAGAAGGAAGACGA+TGG | 0.672702 | tig0017534:-18534 | Msa1361560:CDS |
| GAACGCCACAGCTATTGCCG+AGG | 0.679324 | tig0017534:+22265 | None:intergenic |
| TGCATGGAGCACGATCTCAG+TGG | 0.684014 | tig0017534:+22474 | None:intergenic |
| TCTTTATTAATTGTGCAGTG+GGG | 0.707095 | tig0017534:+23521 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGATAATTAAAGATATTAA+CGG | + | tig0017534:20788-20807 | None:intergenic | 10.0% |
| !! | ATAATCTTAATTAAATTAAG+GGG | + | tig0017534:23078-23097 | None:intergenic | 10.0% |
| !! | GATAATCTTAATTAAATTAA+GGG | + | tig0017534:23079-23098 | None:intergenic | 10.0% |
| !! | TATATGTTAGTTAAAAAGTA+TGG | - | tig0017534:20892-20911 | Msa1361560:intron | 15.0% |
| !!! | ATATGATATTTGAAGTATTT+TGG | + | tig0017534:21323-21342 | None:intergenic | 15.0% |
| !! | AAAAGCAAAAAAATATGTAT+GGG | + | tig0017534:21722-21741 | None:intergenic | 15.0% |
| !! | AAAAAGCAAAAAAATATGTA+TGG | + | tig0017534:21723-21742 | None:intergenic | 15.0% |
| !!! | ATTTGTTATAAACAAAGATT+AGG | - | tig0017534:21752-21771 | Msa1361560:intron | 15.0% |
| !! | TTAAAAACTTCTTCAAAAAA+AGG | + | tig0017534:21974-21993 | None:intergenic | 15.0% |
| !! | AATCAAATATTGCTATAATA+AGG | + | tig0017534:22004-22023 | None:intergenic | 15.0% |
| !! | AAAGAAAATAAGTCTTTAAT+CGG | + | tig0017534:22227-22246 | None:intergenic | 15.0% |
| !!! | ATTTTTCAATTAAGATAACA+AGG | - | tig0017534:22471-22490 | Msa1361560:CDS | 15.0% |
| !!! | TTTTTCAATTAAGATAACAA+GGG | - | tig0017534:22472-22491 | Msa1361560:CDS | 15.0% |
| !! | GGATAATCTTAATTAAATTA+AGG | + | tig0017534:23080-23099 | None:intergenic | 15.0% |
| !! | AAAGTTAGTTAGTTACATAA+CGG | + | tig0017534:18434-18453 | None:intergenic | 20.0% |
| !!! | ATTGATTTTGAGTTGAATTT+AGG | - | tig0017534:18719-18738 | Msa1361560:intron | 20.0% |
| !!! | TTGATTTTGAGTTGAATTTA+GGG | - | tig0017534:18720-18739 | Msa1361560:intron | 20.0% |
| !! | TTTAACTATAAGCTGAAATT+TGG | + | tig0017534:18828-18847 | None:intergenic | 20.0% |
| !! | GATTTATTTGAATAATCTCA+AGG | + | tig0017534:18860-18879 | None:intergenic | 20.0% |
| !!! | TGAATTATGATTTTACTCTT+TGG | - | tig0017534:19260-19279 | Msa1361560:intron | 20.0% |
| !! | CATATTAAGGTAATTTAAAC+TGG | + | tig0017534:19666-19685 | None:intergenic | 20.0% |
| !! | CAGTTTAAATTACCTTAATA+TGG | - | tig0017534:19664-19683 | Msa1361560:intron | 20.0% |
| !!! | TGTTAATATATTTTTCGGTA+TGG | - | tig0017534:19710-19729 | Msa1361560:intron | 20.0% |
| !! | ACAATTTGCAATTCAAAATT+CGG | + | tig0017534:20041-20060 | None:intergenic | 20.0% |
| !!! | AGGTTGGTATTTTATTTTAT+TGG | - | tig0017534:20261-20280 | Msa1361560:intron | 20.0% |
| !! | AAATACAGTACTGTATTAAA+AGG | - | tig0017534:21128-21147 | Msa1361560:CDS | 20.0% |
| !! | AATACAGTACTGTATTAAAA+GGG | - | tig0017534:21129-21148 | Msa1361560:CDS | 20.0% |
| !! | TTAAAAGGGAGAAATTTAAT+CGG | - | tig0017534:21143-21162 | Msa1361560:CDS | 20.0% |
| !! | TGATGAAAATGATTATATCA+TGG | - | tig0017534:21173-21192 | Msa1361560:CDS | 20.0% |
| !! | AAAATCAAACATAACTCTTA+GGG | - | tig0017534:21415-21434 | Msa1361560:CDS | 20.0% |
| !! | AAAAGAACCTAAATATTACA+GGG | + | tig0017534:21678-21697 | None:intergenic | 20.0% |
| !! | TAAAAGAACCTAAATATTAC+AGG | + | tig0017534:21679-21698 | None:intergenic | 20.0% |
| !!! | AAAAAAAGTATGTATCGTAA+GGG | + | tig0017534:22675-22694 | None:intergenic | 20.0% |
| !!! | TAAAAAAAGTATGTATCGTA+AGG | + | tig0017534:22676-22695 | None:intergenic | 20.0% |
| ! | CAATTAATAAAGACAGAAAG+AGG | - | tig0017534:18071-18090 | Msa1361560:three_prime_UTR | 25.0% |
| ! | ATGAAGTAGAAAGTTTAAAC+TGG | + | tig0017534:18126-18145 | None:intergenic | 25.0% |
| !! | TTATAATTCCATTCTAGCTA+GGG | - | tig0017534:18170-18189 | Msa1361560:three_prime_UTR | 25.0% |
| !!! | AGAAGAATTTGATTTTGGAT+TGG | + | tig0017534:18198-18217 | None:intergenic | 25.0% |
| !!! | GATGAAGAAGAATTTGATTT+TGG | + | tig0017534:18203-18222 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTAATGATGAAGC+TGG | + | tig0017534:18318-18337 | None:intergenic | 25.0% |
| ! | AGCTTCATCATTAAGAAAAA+AGG | - | tig0017534:18317-18336 | Msa1361560:three_prime_UTR | 25.0% |
| ! | TAAGAAAAAGTTGTTAGGTT+GGG | + | tig0017534:18530-18549 | None:intergenic | 25.0% |
| ! | ATAAGAAAAAGTTGTTAGGT+TGG | + | tig0017534:18531-18550 | None:intergenic | 25.0% |
| ! | TGAGATAAGAAAAAGTTGTT+AGG | + | tig0017534:18535-18554 | None:intergenic | 25.0% |
| ! | CGAAAATTCAGTAACAAAAA+AGG | + | tig0017534:18567-18586 | None:intergenic | 25.0% |
| !!! | AATTTTGACTCATCCAAAAT+TGG | - | tig0017534:18891-18910 | Msa1361560:intron | 25.0% |
| ! | CAAAGCTTAAAAAGCAAAAA+GGG | + | tig0017534:18953-18972 | None:intergenic | 25.0% |
| ! | TCAAAGCTTAAAAAGCAAAA+AGG | + | tig0017534:18954-18973 | None:intergenic | 25.0% |
| ! | TGTAAACGAAGATATTAGTT+TGG | + | tig0017534:19375-19394 | None:intergenic | 25.0% |
| ! | ACTAATATCTTCGTTTACAT+TGG | - | tig0017534:19376-19395 | Msa1361560:intron | 25.0% |
| ! | GTTGAGAAATGTAAATCAAA+AGG | + | tig0017534:19500-19519 | None:intergenic | 25.0% |
| !! | AATATCTTGTTTCTCATTTC+AGG | - | tig0017534:19526-19545 | Msa1361560:intron | 25.0% |
| ! | GCTATTAAACTTACATTAGA+TGG | - | tig0017534:19575-19594 | Msa1361560:intron | 25.0% |
| !!! | AATATATTTTTCGGTATGGT+TGG | - | tig0017534:19714-19733 | Msa1361560:intron | 25.0% |
| ! | TCATAATCTTATATGGTTCA+TGG | - | tig0017534:19804-19823 | Msa1361560:intron | 25.0% |
| ! | ATCATTACTTGGATGTTATT+TGG | + | tig0017534:19966-19985 | None:intergenic | 25.0% |
| ! | CAATTTGCAATTCAAAATTC+GGG | + | tig0017534:20040-20059 | None:intergenic | 25.0% |
| ! | TATTGTAAAAGATGTGAACA+AGG | + | tig0017534:20219-20238 | None:intergenic | 25.0% |
| ! | CAAAGTAAAAAATGCATCTT+AGG | - | tig0017534:20286-20305 | Msa1361560:intron | 25.0% |
| ! | AAATGGCACATATAATTATG+AGG | + | tig0017534:20539-20558 | None:intergenic | 25.0% |
| ! | TAAAAGGGAGAAATTTAATC+GGG | - | tig0017534:21144-21163 | Msa1361560:CDS | 25.0% |
| ! | CAAAATCAAACATAACTCTT+AGG | - | tig0017534:21414-21433 | Msa1361560:CDS | 25.0% |
| ! | ATAGTTCCAATTTAATTGGA+AGG | - | tig0017534:21617-21636 | Msa1361560:intron | 25.0% |
| ! | TTGTAACCTTCCAATTAAAT+TGG | + | tig0017534:21626-21645 | None:intergenic | 25.0% |
| ! | ATATTGCTATAATAAGGACT+AGG | + | tig0017534:21998-22017 | None:intergenic | 25.0% |
| ! | TATAGCATAAGCATATTAAG+CGG | + | tig0017534:22031-22050 | None:intergenic | 25.0% |
| ! | GGAAATTACTACTGTAATAT+AGG | - | tig0017534:22083-22102 | Msa1361560:intron | 25.0% |
| ! | AGCTTATCAAAAAACACTTT+AGG | - | tig0017534:22538-22557 | Msa1361560:CDS | 25.0% |
| ! | ATAAACTTGTGAGAAAATGA+TGG | - | tig0017534:22577-22596 | Msa1361560:intron | 25.0% |
| ! | AGATTTCGAACAAAAATGTT+TGG | - | tig0017534:22789-22808 | Msa1361560:intron | 25.0% |
| !! | GGTTTCTTAGTGTAATATTT+TGG | - | tig0017534:22848-22867 | Msa1361560:intron | 25.0% |
| !!! | TTCTTAGTGTAATATTTTGG+TGG | - | tig0017534:22851-22870 | Msa1361560:intron | 25.0% |
| ! | ATCTTAATTAAATTAAGGGG+CGG | + | tig0017534:23075-23094 | None:intergenic | 25.0% |
| ! | GTGATATTGAAATCTTAAAC+TGG | - | tig0017534:23116-23135 | Msa1361560:CDS | 25.0% |
| ! | TATTGAAATCTTAAACTGGT+AGG | - | tig0017534:23120-23139 | Msa1361560:CDS | 25.0% |
| ! | TATCATATCCAATTAAAGCT+TGG | - | tig0017534:23408-23427 | Msa1361560:five_prime_UTR | 25.0% |
| ! | ATCATATCCAATTAAAGCTT+GGG | - | tig0017534:23409-23428 | Msa1361560:five_prime_UTR | 25.0% |
| ! | ATACAACAACTAAACAAAAC+AGG | + | tig0017534:23505-23524 | None:intergenic | 25.0% |
| TCTTTATTAATTGTGCAGTG+GGG | + | tig0017534:18064-18083 | None:intergenic | 30.0% | |
| GTCTTTATTAATTGTGCAGT+GGG | + | tig0017534:18065-18084 | None:intergenic | 30.0% | |
| TGTCTTTATTAATTGTGCAG+TGG | + | tig0017534:18066-18085 | None:intergenic | 30.0% | |
| AGTAGAAAGTTTAAACTGGA+TGG | + | tig0017534:18122-18141 | None:intergenic | 30.0% | |
| ! | CTTATAATTCCATTCTAGCT+AGG | - | tig0017534:18169-18188 | Msa1361560:three_prime_UTR | 30.0% |
| ! | GTGCTTTGAGTATTATTGTT+AGG | - | tig0017534:18669-18688 | Msa1361560:intron | 30.0% |
| !!! | CTTTTGTTTGTTTTTGCTTG+TGG | - | tig0017534:18990-19009 | Msa1361560:intron | 30.0% |
| !!! | TTTGTTTTTGCTTGTGGAAA+TGG | - | tig0017534:18996-19015 | Msa1361560:intron | 30.0% |
| ! | AGAAGTAAGAGACTTTTCTT+GGG | + | tig0017534:19135-19154 | None:intergenic | 30.0% |
| TTACTTCTGTGCTAGAAATA+TGG | - | tig0017534:19147-19166 | Msa1361560:intron | 30.0% | |
| ATTGGAATATGCTCCATAAT+TGG | - | tig0017534:19394-19413 | Msa1361560:intron | 30.0% | |
| TACAGTCAATGATCCAATTA+TGG | + | tig0017534:19410-19429 | None:intergenic | 30.0% | |
| ATGATAAAGGTGAATTGGAT+TGG | + | tig0017534:19443-19462 | None:intergenic | 30.0% | |
| CTAGAATGATAAAGGTGAAT+TGG | + | tig0017534:19448-19467 | None:intergenic | 30.0% | |
| CTGTTGACAAAATTCAATAG+TGG | - | tig0017534:19468-19487 | Msa1361560:intron | 30.0% | |
| TTGACAAAATTCAATAGTGG+AGG | - | tig0017534:19471-19490 | Msa1361560:intron | 30.0% | |
| ATGTCTGAAAGTAAACAAAC+TGG | + | tig0017534:19607-19626 | None:intergenic | 30.0% | |
| ! | AGTTTGTTTACTTTCAGACA+TGG | - | tig0017534:19606-19625 | Msa1361560:intron | 30.0% |
| ! | TCAGACATGGATTTTTACAA+TGG | - | tig0017534:19619-19638 | Msa1361560:intron | 30.0% |
| ! | ATTTAAACTGGTAATGATGC+AGG | + | tig0017534:19654-19673 | None:intergenic | 30.0% |
| !!! | TCTAGTACAAGAAAGCATTT+TGG | - | tig0017534:19766-19785 | Msa1361560:intron | 30.0% |
| GGGTGATTCATAATCTTATA+TGG | - | tig0017534:19797-19816 | Msa1361560:intron | 30.0% | |
| AACTCATGTTGAAAATACCA+AGG | + | tig0017534:19848-19867 | None:intergenic | 30.0% | |
| GTTCAAGAATATATCAGTTC+TGG | + | tig0017534:20009-20028 | None:intergenic | 30.0% | |
| !! | TAACTTGCTTGTTAAGTTTC+TGG | - | tig0017534:20085-20104 | Msa1361560:intron | 30.0% |
| ! | AACTTGCTTGTTAAGTTTCT+GGG | - | tig0017534:20086-20105 | Msa1361560:intron | 30.0% |
| TATAAGCAATATTCTGACTG+AGG | + | tig0017534:20615-20634 | None:intergenic | 30.0% | |
| !! | ATGTGACATGCATTTTGAAA+CGG | - | tig0017534:20951-20970 | Msa1361560:intron | 30.0% |
| AAAAGGGAGAAATTTAATCG+GGG | - | tig0017534:21145-21164 | Msa1361560:CDS | 30.0% | |
| CGATACACAATTCAAAAAAG+TGG | + | tig0017534:21234-21253 | None:intergenic | 30.0% | |
| GGGAATAGTTCCAATTTAAT+TGG | - | tig0017534:21613-21632 | Msa1361560:intron | 30.0% | |
| ACTTCTTCAAAAAAAGGACT+AGG | + | tig0017534:21968-21987 | None:intergenic | 30.0% | |
| ATAGCATAAGCATATTAAGC+GGG | + | tig0017534:22030-22049 | None:intergenic | 30.0% | |
| !! | TGCTATAGTTGATAGATCTA+TGG | - | tig0017534:22044-22063 | Msa1361560:intron | 30.0% |
| !! | GCTATAGTTGATAGATCTAT+GGG | - | tig0017534:22045-22064 | Msa1361560:intron | 30.0% |
| !! | CTATAGTTGATAGATCTATG+GGG | - | tig0017534:22046-22065 | Msa1361560:intron | 30.0% |
| TATGATTCACTTTCTAGACA+TGG | - | tig0017534:22255-22274 | Msa1361560:CDS | 30.0% | |
| ATGATTCACTTTCTAGACAT+GGG | - | tig0017534:22256-22275 | Msa1361560:CDS | 30.0% | |
| CTCTGTTTGGTAAAAAATAG+CGG | - | tig0017534:22279-22298 | Msa1361560:CDS | 30.0% | |
| ! | ACTAATAAGCTAGCTTAAAG+TGG | - | tig0017534:22305-22324 | Msa1361560:intron | 30.0% |
| TAAAGTGGATGAACTTATAG+CGG | - | tig0017534:22320-22339 | Msa1361560:intron | 30.0% | |
| TAGTATAAGCTAGCTGATAA+CGG | - | tig0017534:22344-22363 | Msa1361560:intron | 30.0% | |
| ATGACTAAAAAAGACATGTC+TGG | + | tig0017534:22606-22625 | None:intergenic | 30.0% | |
| !!! | GCAAATTATTTTGAAGCTAC+AGG | + | tig0017534:22719-22738 | None:intergenic | 30.0% |
| ATGCATATAAACCTACATCA+TGG | - | tig0017534:22743-22762 | Msa1361560:intron | 30.0% | |
| !! | TGTATGTAACTTAAGTTGAG+AGG | - | tig0017534:22880-22899 | Msa1361560:intron | 30.0% |
| ! | GCACTGATGATAAATGATTT+AGG | + | tig0017534:22967-22986 | None:intergenic | 30.0% |
| CTCTTGACAATGAGAAAATA+TGG | + | tig0017534:23181-23200 | None:intergenic | 30.0% | |
| TACAGTATGAAGCAGAAATA+TGG | - | tig0017534:23215-23234 | Msa1361560:intron | 30.0% | |
| AGAAATGTAGCTGTGTTATA+GGG | - | tig0017534:23265-23284 | Msa1361560:CDS | 30.0% | |
| ACTACTGCAAATACAAAACT+GGG | + | tig0017534:23469-23488 | None:intergenic | 30.0% | |
| TACTACTGCAAATACAAAAC+TGG | + | tig0017534:23470-23489 | None:intergenic | 30.0% | |
| GTTTAAACTGGATGGAAATG+TGG | + | tig0017534:18114-18133 | None:intergenic | 35.0% | |
| !! | CAATTTGATTGGCTTCATCT+TGG | - | tig0017534:18265-18284 | Msa1361560:three_prime_UTR | 35.0% |
| ACTAACTAACTTTCCGTTTC+AGG | - | tig0017534:18441-18460 | Msa1361560:three_prime_UTR | 35.0% | |
| GTTATCTTCTTCAACCTCTT+TGG | - | tig0017534:18478-18497 | Msa1361560:exon | 35.0% | |
| !! | AGCTTTATTGCAGTGATTGT+TGG | - | tig0017534:18587-18606 | Msa1361560:CDS | 35.0% |
| ! | ATAATACTCAAAGCACCAAG+TGG | + | tig0017534:18665-18684 | None:intergenic | 35.0% |
| GTTAGGTAACCAATGTTGTT+TGG | - | tig0017534:18686-18705 | Msa1361560:intron | 35.0% | |
| GAGTGAAAACCAAACAACAT+TGG | + | tig0017534:18698-18717 | None:intergenic | 35.0% | |
| !! | TGTATGGTTGGTTCCAATTT+TGG | + | tig0017534:18907-18926 | None:intergenic | 35.0% |
| !! | TGTATTGGCTCATTTCATGT+TGG | - | tig0017534:19031-19050 | Msa1361560:intron | 35.0% |
| !! | GTATTGGCTCATTTCATGTT+GGG | - | tig0017534:19032-19051 | Msa1361560:intron | 35.0% |
| GGTGAGAAGTTACAGAAAAT+GGG | - | tig0017534:19053-19072 | Msa1361560:intron | 35.0% | |
| ! | GAAGTAAGAGACTTTTCTTG+GGG | + | tig0017534:19134-19153 | None:intergenic | 35.0% |
| ! | CAGAAGTAAGAGACTTTTCT+TGG | + | tig0017534:19136-19155 | None:intergenic | 35.0% |
| ! | TGTGCTAGAAATATGGCTTT+TGG | - | tig0017534:19154-19173 | Msa1361560:intron | 35.0% |
| GTCAACAGCTAGAATGATAA+AGG | + | tig0017534:19456-19475 | None:intergenic | 35.0% | |
| ! | ACAAAATTCAATAGTGGAGG+TGG | - | tig0017534:19474-19493 | Msa1361560:intron | 35.0% |
| GAGTGATACTGACCATATTA+AGG | + | tig0017534:19679-19698 | None:intergenic | 35.0% | |
| !!! | AAAGCATTTTGGTTTGCAGT+GGG | - | tig0017534:19777-19796 | Msa1361560:intron | 35.0% |
| CAACTGAGCAAATCATTACT+TGG | + | tig0017534:19977-19996 | None:intergenic | 35.0% | |
| !! | TAATGATTTGCTCAGTTGAC+TGG | - | tig0017534:19979-19998 | Msa1361560:intron | 35.0% |
| ! | CAAGAATATATCAGTTCTGG+TGG | + | tig0017534:20006-20025 | None:intergenic | 35.0% |
| CAATTCAAAATTCGGGAATC+AGG | + | tig0017534:20033-20052 | None:intergenic | 35.0% | |
| AGCAAGTTATGACAACTGAA+CGG | + | tig0017534:20074-20093 | None:intergenic | 35.0% | |
| AATGGTGATAGACTCTTGTA+TGG | - | tig0017534:20135-20154 | Msa1361560:intron | 35.0% | |
| AACCTTAAACATAATTGCGC+TGG | + | tig0017534:20246-20265 | None:intergenic | 35.0% | |
| ! | AGCGCAATTATGTTTAAGGT+TGG | - | tig0017534:20245-20264 | Msa1361560:intron | 35.0% |
| ! | GCATCTTAGGAGTAATCTTT+TGG | - | tig0017534:20299-20318 | Msa1361560:intron | 35.0% |
| ! | CTAAATGAGAAGAGTACAAC+AGG | + | tig0017534:20352-20371 | None:intergenic | 35.0% |
| CTGTTGTACTCTTCTCATTT+AGG | - | tig0017534:20350-20369 | Msa1361560:intron | 35.0% | |
| ! | CTTCTCATTTAGGACTATTC+TGG | - | tig0017534:20360-20379 | Msa1361560:intron | 35.0% |
| AAGTATAAGCAGCATTGCAT+CGG | - | tig0017534:20386-20405 | Msa1361560:intron | 35.0% | |
| ! | GGTTTCATCACTGTTTTATC+CGG | - | tig0017534:20417-20436 | Msa1361560:intron | 35.0% |
| TTGGTTGCAGCTCAATAAAA+TGG | + | tig0017534:20556-20575 | None:intergenic | 35.0% | |
| ! | AGCATCAAATGTTTGTTGCA+TGG | + | tig0017534:20679-20698 | None:intergenic | 35.0% |
| !! | GACATGTATTTTGAATCGGA+GGG | + | tig0017534:20726-20745 | None:intergenic | 35.0% |
| !! | CTGCGACATGTATTTTGAAT+CGG | + | tig0017534:20730-20749 | None:intergenic | 35.0% |
| AACGGAGGGAGTAAATTTAA+AGG | - | tig0017534:20969-20988 | Msa1361560:intron | 35.0% | |
| ACGGAGGGAGTAAATTTAAA+GGG | - | tig0017534:20970-20989 | Msa1361560:intron | 35.0% | |
| AGTAAATTTAAAGGGGGTCT+TGG | - | tig0017534:20978-20997 | Msa1361560:intron | 35.0% | |
| AATGATATAAAGCTCCGTCA+TGG | + | tig0017534:21086-21105 | None:intergenic | 35.0% | |
| ACTGTAGAGAGATTAAACAG+AGG | - | tig0017534:21548-21567 | Msa1361560:intron | 35.0% | |
| AGATTAAACAGAGGTAGTGT+GGG | - | tig0017534:21557-21576 | Msa1361560:intron | 35.0% | |
| AACAAAGATTAGGCTTCTGA+TGG | - | tig0017534:21762-21781 | Msa1361560:intron | 35.0% | |
| TTGGTACAACGACAAGTATT+CGG | + | tig0017534:21799-21818 | None:intergenic | 35.0% | |
| ACTAAGTAGCCTACTTTCTT+TGG | + | tig0017534:21818-21837 | None:intergenic | 35.0% | |
| GAACATTCATCAATCAGTAC+AGG | + | tig0017534:21873-21892 | None:intergenic | 35.0% | |
| ! | ATGTTCCTTTTATGTCGACA+AGG | - | tig0017534:21887-21906 | Msa1361560:intron | 35.0% |
| ! | TGTTCCTTTTATGTCGACAA+GGG | - | tig0017534:21888-21907 | Msa1361560:intron | 35.0% |
| TAAAGTGAACCAAGCTTTCT+AGG | - | tig0017534:22129-22148 | Msa1361560:intron | 35.0% | |
| TTAACTCAACCTAGAAAGCT+TGG | + | tig0017534:22141-22160 | None:intergenic | 35.0% | |
| GTCTTTAATCGGAAAAGTGA+TGG | + | tig0017534:22216-22235 | None:intergenic | 35.0% | |
| AGAAAGTGAATCATAGAAGC+TGG | + | tig0017534:22250-22269 | None:intergenic | 35.0% | |
| AAAGTGGATGAACTTATAGC+GGG | - | tig0017534:22321-22340 | Msa1361560:intron | 35.0% | |
| AAGCTAGCTGATTGAATTTG+TGG | - | tig0017534:22369-22388 | Msa1361560:intron | 35.0% | |
| CTGATTGAATTTGTGGTGTT+TGG | - | tig0017534:22376-22395 | Msa1361560:intron | 35.0% | |
| ! | TTCTCACAGTTTGTTCAGAA+AGG | + | tig0017534:22940-22959 | None:intergenic | 35.0% |
| ATCACTTGAAATGATCTTGC+TGG | + | tig0017534:23101-23120 | None:intergenic | 35.0% | |
| ATCCATTCATTGAGTTAGCA+GGG | - | tig0017534:23155-23174 | Msa1361560:intron | 35.0% | |
| TCTCATTGTCAAGAGCAATT+CGG | - | tig0017534:23186-23205 | Msa1361560:intron | 35.0% | |
| GAGAAATGTAGCTGTGTTAT+AGG | - | tig0017534:23264-23283 | Msa1361560:CDS | 35.0% | |
| TCTTGCTAAACCAAATGGAT+GGG | + | tig0017534:23305-23324 | None:intergenic | 35.0% | |
| GAATCTCTTGCTAAACCAAA+TGG | + | tig0017534:23310-23329 | None:intergenic | 35.0% | |
| ! | GATAGAACCCAAGCTTTAAT+TGG | + | tig0017534:23419-23438 | None:intergenic | 35.0% |
| ! | GGTTCTATCATCTGAAACTA+AGG | - | tig0017534:23430-23449 | Msa1361560:five_prime_UTR | 35.0% |
| ! | TCTATCATCTGAAACTAAGG+AGG | - | tig0017534:23433-23452 | Msa1361560:five_prime_UTR | 35.0% |
| AAGAAATACACATGGGGAAA+GGG | + | tig0017534:23558-23577 | None:intergenic | 35.0% | |
| AAAGAAATACACATGGGGAA+AGG | + | tig0017534:23559-23578 | None:intergenic | 35.0% | |
| GGCAAAAAGAAATACACATG+GGG | + | tig0017534:23564-23583 | None:intergenic | 35.0% | |
| GGGCAAAAAGAAATACACAT+GGG | + | tig0017534:23565-23584 | None:intergenic | 35.0% | |
| !! | TGTTACGACTTGGTTTGGTT+TGG | + | tig0017534:18031-18050 | None:intergenic | 40.0% |
| !! | ACAGTTGTTACGACTTGGTT+TGG | + | tig0017534:18036-18055 | None:intergenic | 40.0% |
| ATTAATTGTGCAGTGGGGTT+GGG | + | tig0017534:18059-18078 | None:intergenic | 40.0% | |
| TATTAATTGTGCAGTGGGGT+TGG | + | tig0017534:18060-18079 | None:intergenic | 40.0% | |
| TACACCTCCAGCAATTTGAT+TGG | - | tig0017534:18254-18273 | Msa1361560:three_prime_UTR | 40.0% | |
| GATGAAGCCAATCAAATTGC+TGG | + | tig0017534:18264-18283 | None:intergenic | 40.0% | |
| AAAAAAGGTCTTCAACGTGC+CGG | - | tig0017534:18332-18351 | Msa1361560:three_prime_UTR | 40.0% | |
| ! | AAGTGAGTTGACTTACTAGC+AGG | + | tig0017534:18371-18390 | None:intergenic | 40.0% |
| ACAGAGAGAGAGGTAAAAGA+GGG | + | tig0017534:18403-18422 | None:intergenic | 40.0% | |
| AACAGAGAGAGAGGTAAAAG+AGG | + | tig0017534:18404-18423 | None:intergenic | 40.0% | |
| ! | TAACTTTCCGTTTCAGGTGT+CGG | - | tig0017534:18447-18466 | Msa1361560:three_prime_UTR | 40.0% |
| ATCTTCTTCAACCTCTTTGG+TGG | - | tig0017534:18481-18500 | Msa1361560:exon | 40.0% | |
| TGTAGCATACATTTATGCGC+CGG | - | tig0017534:18625-18644 | Msa1361560:intron | 40.0% | |
| ATTGGAACCAACCATACACT+TGG | - | tig0017534:18909-18928 | Msa1361560:intron | 40.0% | |
| GGGTGAGAAGTTACAGAAAA+TGG | - | tig0017534:19052-19071 | Msa1361560:intron | 40.0% | |
| TTACAGAAAATGGGCATGCT+TGG | - | tig0017534:19062-19081 | Msa1361560:intron | 40.0% | |
| TACAGAAAATGGGCATGCTT+GGG | - | tig0017534:19063-19082 | Msa1361560:intron | 40.0% | |
| ATTTCTCTTGTACACAGCCT+CGG | - | tig0017534:19300-19319 | Msa1361560:intron | 40.0% | |
| ! | ATATTAGTTTGGCCATAGCG+AGG | + | tig0017534:19364-19383 | None:intergenic | 40.0% |
| ! | ACTGGTAATGATGCAGGAAA+TGG | + | tig0017534:19648-19667 | None:intergenic | 40.0% |
| !!! | GAAAGCATTTTGGTTTGCAG+TGG | - | tig0017534:19776-19795 | Msa1361560:intron | 40.0% |
| ! | TTGGATGTTATTTGGACGAG+AGG | + | tig0017534:19958-19977 | None:intergenic | 40.0% |
| ! | TTTCTGGGAATCTCTGATCT+GGG | - | tig0017534:20101-20120 | Msa1361560:intron | 40.0% |
| GTGATAGACTCTTGTATGGT+TGG | - | tig0017534:20139-20158 | Msa1361560:intron | 40.0% | |
| GTGAACAAGGCATAGTAGAT+TGG | + | tig0017534:20206-20225 | None:intergenic | 40.0% | |
| AGCCAGCGCAATTATGTTTA+AGG | - | tig0017534:20241-20260 | Msa1361560:intron | 40.0% | |
| ACTGTGCAATACAGTTGTTC+CGG | + | tig0017534:20439-20458 | None:intergenic | 40.0% | |
| TGAGGACTTGCATCATCAAA+GGG | + | tig0017534:20521-20540 | None:intergenic | 40.0% | |
| ATGAGGACTTGCATCATCAA+AGG | + | tig0017534:20522-20541 | None:intergenic | 40.0% | |
| !! | CGACATGTATTTTGAATCGG+AGG | + | tig0017534:20727-20746 | None:intergenic | 40.0% |
| !!! | TGACATGCATTTTGAAACGG+AGG | - | tig0017534:20954-20973 | Msa1361560:intron | 40.0% |
| !!! | GACATGCATTTTGAAACGGA+GGG | - | tig0017534:20955-20974 | Msa1361560:intron | 40.0% |
| CGGAGGGAGTAAATTTAAAG+GGG | - | tig0017534:20971-20990 | Msa1361560:intron | 40.0% | |
| GGAGGGAGTAAATTTAAAGG+GGG | - | tig0017534:20972-20991 | Msa1361560:intron | 40.0% | |
| TATGTGACCTCGTAGTTACA+TGG | + | tig0017534:21024-21043 | None:intergenic | 40.0% | |
| AACTACGAGGTCACATATAC+CGG | - | tig0017534:21027-21046 | Msa1361560:intron | 40.0% | |
| CACATATACCGGTCTACAAT+TGG | - | tig0017534:21038-21057 | Msa1361560:intron | 40.0% | |
| TCTCTGCTCATTCACTAATG+GGG | + | tig0017534:21446-21465 | None:intergenic | 40.0% | |
| CTCTCTGCTCATTCACTAAT+GGG | + | tig0017534:21447-21466 | None:intergenic | 40.0% | |
| TCTCTCTGCTCATTCACTAA+TGG | + | tig0017534:21448-21467 | None:intergenic | 40.0% | |
| AAGAGCAAAGAAACTGAGCA+TGG | - | tig0017534:21496-21515 | Msa1361560:intron | 40.0% | |
| GAGATTAAACAGAGGTAGTG+TGG | - | tig0017534:21556-21575 | Msa1361560:intron | 40.0% | |
| CAAAACCCTAGAACAGAAAG+CGG | - | tig0017534:21648-21667 | Msa1361560:intron | 40.0% | |
| CGGTTCACCCTGTAATATTT+AGG | - | tig0017534:21668-21687 | Msa1361560:intron | 40.0% | |
| ACAAGTATTCGGTACAAGAG+TGG | + | tig0017534:21788-21807 | None:intergenic | 40.0% | |
| GTCGTTGTACCAAAGAAAGT+AGG | - | tig0017534:21806-21825 | Msa1361560:intron | 40.0% | |
| AGATCCCTTGTCGACATAAA+AGG | + | tig0017534:21895-21914 | None:intergenic | 40.0% | |
| !! | TATGGGGTTTAGTTCTTCAC+AGG | - | tig0017534:22062-22081 | Msa1361560:intron | 40.0% |
| GTGGTGTTTGGTCAAATTAG+TGG | - | tig0017534:22388-22407 | Msa1361560:intron | 40.0% | |
| ATGTATCGTAAGGGTCTGTT+TGG | + | tig0017534:22666-22685 | None:intergenic | 40.0% | |
| TCTGACATTCTCCATGATGT+AGG | + | tig0017534:22757-22776 | None:intergenic | 40.0% | |
| TCAACATTCATGACACACTG+TGG | - | tig0017534:22827-22846 | Msa1361560:intron | 40.0% | |
| ! | CACAGTTTGTTCAGAAAGGA+AGG | + | tig0017534:22936-22955 | None:intergenic | 40.0% |
| CAGTGAACAATGGAAACAGA+AGG | - | tig0017534:23038-23057 | Msa1361560:intron | 40.0% | |
| CATCCATTCATTGAGTTAGC+AGG | - | tig0017534:23154-23173 | Msa1361560:intron | 40.0% | |
| GTATGAAGCAGAAATATGGC+TGG | - | tig0017534:23219-23238 | Msa1361560:intron | 40.0% | |
| CTCTTGCTAAACCAAATGGA+TGG | + | tig0017534:23306-23325 | None:intergenic | 40.0% | |
| ! | ATCATCTGAAACTAAGGAGG+TGG | - | tig0017534:23436-23455 | Msa1361560:five_prime_UTR | 40.0% |
| GGGGCAAAAAGAAATACACA+TGG | + | tig0017534:23566-23585 | None:intergenic | 40.0% | |
| TTGGGACAGTTGTTACGACT+TGG | + | tig0017534:18041-18060 | None:intergenic | 45.0% | |
| GATTGGAACCCTAGCTAGAA+TGG | + | tig0017534:18181-18200 | None:intergenic | 45.0% | |
| GAAGCCAATCAAATTGCTGG+AGG | + | tig0017534:18261-18280 | None:intergenic | 45.0% | |
| ! | TTCATCTTGGCCGTTGTTTC+TGG | - | tig0017534:18278-18297 | Msa1361560:three_prime_UTR | 45.0% |
| !! | GATGAAAGCGCCAGAAACAA+CGG | + | tig0017534:18291-18310 | None:intergenic | 45.0% |
| !! | GTTGTTTCTGGCGCTTTCAT+CGG | - | tig0017534:18290-18309 | Msa1361560:three_prime_UTR | 45.0% |
| GGTAACAGTAACAGAGAGAG+AGG | + | tig0017534:18413-18432 | None:intergenic | 45.0% | |
| ! | CTTCAACCTCTTTGGTGGAT+CGG | - | tig0017534:18486-18505 | Msa1361560:CDS | 45.0% |
| CGAGAATCCAAGTGTATGGT+TGG | + | tig0017534:18919-18938 | None:intergenic | 45.0% | |
| ACGACGAGAATCCAAGTGTA+TGG | + | tig0017534:18923-18942 | None:intergenic | 45.0% | |
| TGGCTAGTGTAGTGCTGTAT+TGG | - | tig0017534:19016-19035 | Msa1361560:intron | 45.0% | |
| GGGTGTCTTCTATGCATTGT+CGG | - | tig0017534:19083-19102 | Msa1361560:intron | 45.0% | |
| GGTGTCTTCTATGCATTGTC+GGG | - | tig0017534:19084-19103 | Msa1361560:intron | 45.0% | |
| GCTGTGTACAAGAGAAATGC+TGG | + | tig0017534:19298-19317 | None:intergenic | 45.0% | |
| GTCATGAGCGTAAAAGCGAT+TGG | - | tig0017534:19548-19567 | Msa1361560:intron | 45.0% | |
| ! | CAAGGCACTAGCTAGAAAAG+TGG | + | tig0017534:19830-19849 | None:intergenic | 45.0% |
| !!! | CACTTTTCTAGCTAGTGCCT+TGG | - | tig0017534:19828-19847 | Msa1361560:intron | 45.0% |
| GTTATGACAACTGAACGGCA+TGG | + | tig0017534:20069-20088 | None:intergenic | 45.0% | |
| ! | GTTTCTGGGAATCTCTGATC+TGG | - | tig0017534:20100-20119 | Msa1361560:intron | 45.0% |
| ATCTCTGATCTGGGTATCTG+TGG | - | tig0017534:20110-20129 | Msa1361560:intron | 45.0% | |
| ATCTGGGTATCTGTGGTGAA+TGG | - | tig0017534:20117-20136 | Msa1361560:intron | 45.0% | |
| TCTTGTATGGTTGGCATTGC+AGG | - | tig0017534:20148-20167 | Msa1361560:intron | 45.0% | |
| AGGTAAGGCCTAATGCACTT+CGG | - | tig0017534:20488-20507 | Msa1361560:intron | 45.0% | |
| TGACTGAGGACTAAGAGATG+GGG | + | tig0017534:20601-20620 | None:intergenic | 45.0% | |
| CTGACTGAGGACTAAGAGAT+GGG | + | tig0017534:20602-20621 | None:intergenic | 45.0% | |
| TCTGACTGAGGACTAAGAGA+TGG | + | tig0017534:20603-20622 | None:intergenic | 45.0% | |
| CACATGCCAATGCACAACTT+TGG | - | tig0017534:20762-20781 | Msa1361560:intron | 45.0% | |
| TAACGGCCAAAGTTGTGCAT+TGG | + | tig0017534:20771-20790 | None:intergenic | 45.0% | |
| GTTGCTACCATGTAACTACG+AGG | - | tig0017534:21014-21033 | Msa1361560:intron | 45.0% | |
| TATAAAGCTCCGTCATGGTG+TGG | + | tig0017534:21081-21100 | None:intergenic | 45.0% | |
| TTAAACAGAGGTAGTGTGGG+AGG | - | tig0017534:21560-21579 | Msa1361560:intron | 45.0% | |
| GTGAACCGCTTTCTGTTCTA+GGG | + | tig0017534:21656-21675 | None:intergenic | 45.0% | |
| TTCTAGACATGGGCTCTGTT+TGG | - | tig0017534:22266-22285 | Msa1361560:CDS | 45.0% | |
| TCCAAGGCAACAGTGAACAA+TGG | - | tig0017534:23028-23047 | Msa1361560:intron | 45.0% | |
| TCCATTGTTCACTGTTGCCT+TGG | + | tig0017534:23032-23051 | None:intergenic | 45.0% | |
| TGGAAACAGAAGGAAGACGA+TGG | - | tig0017534:23048-23067 | Msa1361560:intron | 45.0% | |
| TCTCTGTGATCCCATCCATT+TGG | - | tig0017534:23292-23311 | Msa1361560:CDS | 45.0% | |
| CACATTGTGTAGCAAGACAG+AGG | - | tig0017534:23343-23362 | Msa1361560:exon | 45.0% | |
| TGGGGAAAGGGAAAGGAAAA+GGG | + | tig0017534:23546-23565 | None:intergenic | 45.0% | |
| ATGGGGAAAGGGAAAGGAAA+AGG | + | tig0017534:23547-23566 | None:intergenic | 45.0% | |
| ATACACATGGGGAAAGGGAA+AGG | + | tig0017534:23553-23572 | None:intergenic | 45.0% | |
| !!! | TTTTATGTTAATATATTTTT+CGG | - | tig0017534:19705-19724 | Msa1361560:intron | 5.0% |
| !!! | TATTAAATTTTAATAGTTTT+TGG | + | tig0017534:20575-20594 | None:intergenic | 5.0% |
| ! | CTTCAACGTGCCGGTCTTAA+CGG | - | tig0017534:18341-18360 | Msa1361560:three_prime_UTR | 50.0% |
| ATAGCCTCCGACACCTGAAA+CGG | + | tig0017534:18457-18476 | None:intergenic | 50.0% | |
| AGCATACATTTATGCGCCGG+CGG | - | tig0017534:18628-18647 | Msa1361560:intron | 50.0% | |
| ! | GAGACTTTTCTTGGGGTGCA+TGG | + | tig0017534:19127-19146 | None:intergenic | 50.0% |
| !! | TGGCTTTTGGCTGTTCAACC+AGG | - | tig0017534:19167-19186 | Msa1361560:intron | 50.0% |
| TTGTATTGTGCGCCTCGCTA+TGG | - | tig0017534:19349-19368 | Msa1361560:intron | 50.0% | |
| ATGGTTGGCATTGCAGGCAT+TGG | - | tig0017534:20154-20173 | Msa1361560:intron | 50.0% | |
| AGCATTGCATCGGAGCTATG+TGG | - | tig0017534:20396-20415 | Msa1361560:intron | 50.0% | |
| TCCTCCAGTCAGTACAGGTA+AGG | - | tig0017534:20473-20492 | Msa1361560:intron | 50.0% | |
| ! | TAGGCCTTACCTGTACTGAC+TGG | + | tig0017534:20480-20499 | None:intergenic | 50.0% |
| GGTAAGGCCTAATGCACTTC+GGG | - | tig0017534:20489-20508 | Msa1361560:intron | 50.0% | |
| GTAAGGCCTAATGCACTTCG+GGG | - | tig0017534:20490-20509 | Msa1361560:intron | 50.0% | |
| ! | GTGCATTGGCATGTGTGAAG+TGG | + | tig0017534:20757-20776 | None:intergenic | 50.0% |
| GGTTCGGACCAATTGTAGAC+CGG | + | tig0017534:21049-21068 | None:intergenic | 50.0% | |
| TTCCCTAGACCACACCATGA+CGG | - | tig0017534:21069-21088 | Msa1361560:intron | 50.0% | |
| ! | ACAAGAACGCGTGCAGCTTT+TGG | - | tig0017534:21592-21611 | Msa1361560:intron | 50.0% |
| ! | CAAGAACGCGTGCAGCTTTT+GGG | - | tig0017534:21593-21612 | Msa1361560:intron | 50.0% |
| GGTGAACCGCTTTCTGTTCT+AGG | + | tig0017534:21657-21676 | None:intergenic | 50.0% | |
| GGCCCTGCTAACTCAATGAA+TGG | + | tig0017534:23160-23179 | None:intergenic | 50.0% | |
| !! | AGCAGGAGTGCCGTTAAGAC+CGG | + | tig0017534:18354-18373 | None:intergenic | 55.0% |
| !! | CTTTCCGTTTCAGGTGTCGG+AGG | - | tig0017534:18450-18469 | Msa1361560:three_prime_UTR | 55.0% |
| !! | GTTTCAGGTGTCGGAGGCTA+TGG | - | tig0017534:18456-18475 | Msa1361560:three_prime_UTR | 55.0% |
| ! | ACCTCTTTGGTGGATCGGCA+TGG | - | tig0017534:18491-18510 | Msa1361560:CDS | 55.0% |
| ACCATGCCGATCCACCAAAG+AGG | + | tig0017534:18495-18514 | None:intergenic | 55.0% | |
| ! | AGTGGAGTAACAAGCACCGC+CGG | + | tig0017534:18647-18666 | None:intergenic | 55.0% |
| ! | GCGGTGCTTGTTACTCCACT+TGG | - | tig0017534:18647-18666 | Msa1361560:intron | 55.0% |
| TGCATGGAGCACGATCTCAG+TGG | + | tig0017534:19111-19130 | None:intergenic | 55.0% | |
| ! | TATGCTGCTGCTGCTGACTG+AGG | - | tig0017534:19190-19209 | Msa1361560:intron | 55.0% |
| ! | CTGCTGCTGACTGAGGCTAT+TGG | - | tig0017534:19197-19216 | Msa1361560:intron | 55.0% |
| ! | CTGCTGACTGAGGCTATTGG+TGG | - | tig0017534:19200-19219 | Msa1361560:intron | 55.0% |
| GACTGGAGGATCTGGTACTC+TGG | + | tig0017534:20463-20482 | None:intergenic | 55.0% | |
| !! | CCTGTACTGACTGGAGGATC+TGG | + | tig0017534:20471-20490 | None:intergenic | 55.0% |
| CCAGATCCTCCAGTCAGTAC+AGG | - | tig0017534:20468-20487 | Msa1361560:intron | 55.0% | |
| !! | GCCTTACCTGTACTGACTGG+AGG | + | tig0017534:20477-20496 | None:intergenic | 55.0% |
| GATCCTCCCCGAAGTGCATT+AGG | + | tig0017534:20499-20518 | None:intergenic | 55.0% | |
| GGTGTGGTCTAGGGAAGGTT+CGG | + | tig0017534:21065-21084 | None:intergenic | 55.0% | |
| GTCATGGTGTGGTCTAGGGA+AGG | + | tig0017534:21070-21089 | None:intergenic | 55.0% | |
| CTCCGTCATGGTGTGGTCTA+GGG | + | tig0017534:21074-21093 | None:intergenic | 55.0% | |
| GTCAGCAGCAGCAGCATACC+TGG | + | tig0017534:19188-19207 | None:intergenic | 60.0% | |
| CACAGCCTCGGCAATAGCTG+TGG | - | tig0017534:19312-19331 | Msa1361560:intron | 60.0% | |
| GAACGCCACAGCTATTGCCG+AGG | + | tig0017534:19320-19339 | None:intergenic | 60.0% | |
| AGGCCTAATGCACTTCGGGG+AGG | - | tig0017534:20493-20512 | Msa1361560:intron | 60.0% | |
| GCTCCGTCATGGTGTGGTCT+AGG | + | tig0017534:21075-21094 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017534 | gene | 18017 | 23587 | 18017 | ID=Msa1361560;Name=Msa1361560 |
| tig0017534 | mRNA | 18017 | 23587 | 18017 | ID=Msa1361560-mRNA-1;Parent=Msa1361560;Name=Msa1361560-mRNA-1;_AED=0.12;_eAED=0.12;_QI=234|0.88|0.8|1|0.77|0.7|10|424|334 |
| tig0017534 | exon | 18017 | 18384 | 18017 | ID=Msa1361560-mRNA-1:exon:12487;Parent=Msa1361560-mRNA-1 |
| tig0017534 | exon | 18429 | 18615 | 18429 | ID=Msa1361560-mRNA-1:exon:12486;Parent=Msa1361560-mRNA-1 |
| tig0017534 | exon | 21115 | 21232 | 21115 | ID=Msa1361560-mRNA-1:exon:12485;Parent=Msa1361560-mRNA-1 |
| tig0017534 | exon | 21342 | 21434 | 21342 | ID=Msa1361560-mRNA-1:exon:12484;Parent=Msa1361560-mRNA-1 |
| tig0017534 | exon | 21919 | 22056 | 21919 | ID=Msa1361560-mRNA-1:exon:12483;Parent=Msa1361560-mRNA-1 |
| tig0017534 | exon | 22178 | 22305 | 22178 | ID=Msa1361560-mRNA-1:exon:12482;Parent=Msa1361560-mRNA-1 |
| tig0017534 | exon | 22416 | 22581 | 22416 | ID=Msa1361560-mRNA-1:exon:12481;Parent=Msa1361560-mRNA-1 |
| tig0017534 | exon | 22955 | 23004 | 22955 | ID=Msa1361560-mRNA-1:exon:12480;Parent=Msa1361560-mRNA-1 |
| tig0017534 | exon | 23085 | 23141 | 23085 | ID=Msa1361560-mRNA-1:exon:12479;Parent=Msa1361560-mRNA-1 |
| tig0017534 | exon | 23230 | 23587 | 23230 | ID=Msa1361560-mRNA-1:exon:12478;Parent=Msa1361560-mRNA-1 |
| tig0017534 | five_prime_UTR | 23354 | 23587 | 23354 | ID=Msa1361560-mRNA-1:five_prime_utr;Parent=Msa1361560-mRNA-1 |
| tig0017534 | CDS | 23230 | 23353 | 23230 | ID=Msa1361560-mRNA-1:cds;Parent=Msa1361560-mRNA-1 |
| tig0017534 | CDS | 23085 | 23141 | 23085 | ID=Msa1361560-mRNA-1:cds;Parent=Msa1361560-mRNA-1 |
| tig0017534 | CDS | 22955 | 23004 | 22955 | ID=Msa1361560-mRNA-1:cds;Parent=Msa1361560-mRNA-1 |
| tig0017534 | CDS | 22416 | 22581 | 22416 | ID=Msa1361560-mRNA-1:cds;Parent=Msa1361560-mRNA-1 |
| tig0017534 | CDS | 22178 | 22305 | 22178 | ID=Msa1361560-mRNA-1:cds;Parent=Msa1361560-mRNA-1 |
| tig0017534 | CDS | 21919 | 22056 | 21919 | ID=Msa1361560-mRNA-1:cds;Parent=Msa1361560-mRNA-1 |
| tig0017534 | CDS | 21342 | 21434 | 21342 | ID=Msa1361560-mRNA-1:cds;Parent=Msa1361560-mRNA-1 |
| tig0017534 | CDS | 21115 | 21232 | 21115 | ID=Msa1361560-mRNA-1:cds;Parent=Msa1361560-mRNA-1 |
| tig0017534 | CDS | 18485 | 18615 | 18485 | ID=Msa1361560-mRNA-1:cds;Parent=Msa1361560-mRNA-1 |
| tig0017534 | three_prime_UTR | 18429 | 18484 | 18429 | ID=Msa1361560-mRNA-1:three_prime_utr;Parent=Msa1361560-mRNA-1 |
| tig0017534 | three_prime_UTR | 18017 | 18384 | 18017 | ID=Msa1361560-mRNA-1:three_prime_utr;Parent=Msa1361560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
