Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475150 | XP_039687676.1 | 92.551 | 443 | 30 | 1 | 1 | 443 | 1 | 440 | 0.0 | 854 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475150 | sp|F4JRR5|TTL_ARATH | 47.917 | 432 | 196 | 11 | 22 | 441 | 6 | 420 | 6.29e-125 | 372 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475150 | G7J3W4 | 92.551 | 443 | 30 | 1 | 1 | 443 | 1 | 440 | 0.0 | 854 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0379160 | Msa0475150 | 0.843057 | 1.771012e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475150 | MtrunA17_Chr2g0302301 | 88.303 | 436 | 28 | 3 | 1 | 436 | 1 | 413 | 0.0 | 786 |
| Msa0475150 | MtrunA17_Chr3g0132241 | 88.303 | 436 | 41 | 3 | 1 | 436 | 1 | 426 | 0.0 | 782 |
| Msa0475150 | MtrunA17_Chr2g0302291 | 87.385 | 436 | 42 | 4 | 1 | 436 | 1 | 423 | 0.0 | 769 |
| Msa0475150 | MtrunA17_Chr2g0302271 | 83.716 | 436 | 28 | 2 | 1 | 436 | 1 | 393 | 0.0 | 740 |
| Msa0475150 | MtrunA17_Chr2g0302281 | 83.486 | 436 | 29 | 2 | 1 | 436 | 1 | 393 | 0.0 | 739 |
| Msa0475150 | MtrunA17_Chr2g0302311 | 83.257 | 436 | 30 | 2 | 1 | 436 | 1 | 393 | 0.0 | 737 |
| Msa0475150 | MtrunA17_Chr2g0302211 | 88.197 | 305 | 33 | 1 | 1 | 305 | 40 | 341 | 0.0 | 556 |
| Msa0475150 | MtrunA17_Chr2g0302221 | 93.793 | 145 | 9 | 0 | 299 | 443 | 1 | 145 | 3.15e-97 | 288 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0475150 | AT4G24900.2 | 48.019 | 429 | 197 | 10 | 22 | 441 | 6 | 417 | 1.15e-127 | 376 |
| Msa0475150 | AT4G24900.1 | 47.917 | 432 | 196 | 11 | 22 | 441 | 6 | 420 | 6.39e-126 | 372 |
Find 157 sgRNAs with CRISPR-Local
Find 306 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCCAACTGGCTTCCTAATTT+TGG | 0.158618 | 3_3:-78213780 | Msa0475150:CDS |
| TTTCATTGTTCGATTGATTA+TGG | 0.190403 | 3_3:+78215137 | None:intergenic |
| GCATCAATGATTGTGATAAT+AGG | 0.203391 | 3_3:-78212852 | Msa0475150:three_prime_UTR |
| TGTGAATACCCTTGCTTTGC+AGG | 0.210617 | 3_3:-78214930 | Msa0475150:CDS |
| GACCATTGTCCACCATTATA+AGG | 0.240119 | 3_3:+78214757 | None:intergenic |
| ATGCAAGTGGGTGAAATTTC+TGG | 0.260115 | 3_3:-78213057 | Msa0475150:three_prime_UTR |
| TTCTGGTGGCAAACATGTTC+GGG | 0.260497 | 3_3:-78213040 | Msa0475150:three_prime_UTR |
| ACCTATTGAGGGTCATTTAT+AGG | 0.275818 | 3_3:+78212748 | None:intergenic |
| ATAAGTTGAAGCACTTCTTT+TGG | 0.278651 | 3_3:-78215425 | Msa0475150:CDS |
| CTTTAACATTGGAAACTTGA+TGG | 0.293859 | 3_3:-78212983 | Msa0475150:three_prime_UTR |
| TTCTCCCTTGTGCTTGCTTT+AGG | 0.296235 | 3_3:+78215826 | None:intergenic |
| CAAGAAGCTCCAACGCGTTT+AGG | 0.302629 | 3_3:+78213870 | None:intergenic |
| TTGATTCCCGTAATCGCTTC+TGG | 0.321659 | 3_3:-78215627 | Msa0475150:CDS |
| AAGATTTACCAATATCTAAA+AGG | 0.330531 | 3_3:+78214978 | None:intergenic |
| CTAAACGCGTTGGAGCTTCT+TGG | 0.345827 | 3_3:-78213869 | Msa0475150:CDS |
| CACTCTGGAGTTGGAAATAC+TGG | 0.346137 | 3_3:-78215001 | Msa0475150:CDS |
| CATCAATGATTGTGATAATA+GGG | 0.351900 | 3_3:-78212851 | Msa0475150:three_prime_UTR |
| CCTTGTGCTTGCTTTAGGCT+TGG | 0.352267 | 3_3:+78215831 | None:intergenic |
| TGCCAGACTCTACCAAAATT+AGG | 0.363902 | 3_3:+78213768 | None:intergenic |
| GAGTATCAGGTATCCTCTTC+AGG | 0.367391 | 3_3:-78215025 | Msa0475150:CDS |
| ATATAAGGTTGTATCTTGAT+TGG | 0.378512 | 3_3:+78213663 | None:intergenic |
| AGGATACGAGTTCACAGAAT+TGG | 0.380361 | 3_3:+78215084 | None:intergenic |
| CTGCCACACGAATGAGTATC+AGG | 0.382968 | 3_3:-78215038 | Msa0475150:CDS |
| AGCCACAAACTCCCTTATAA+TGG | 0.386356 | 3_3:-78214769 | Msa0475150:CDS |
| ACCATTGTCCACCATTATAA+GGG | 0.387426 | 3_3:+78214758 | None:intergenic |
| AAACACACCAGAAGCGATTA+CGG | 0.390716 | 3_3:+78215620 | None:intergenic |
| CTTCCCTGACTTGTTTGAAT+GGG | 0.393201 | 3_3:+78213908 | None:intergenic |
| TTTCTGGTGGCAAACATGTT+CGG | 0.400324 | 3_3:-78213041 | Msa0475150:three_prime_UTR |
| TCTTCCCTGACTTGTTTGAA+TGG | 0.400367 | 3_3:+78213907 | None:intergenic |
| TCTTTGCAGCGGATGGATAA+TGG | 0.403257 | 3_3:-78213095 | Msa0475150:intron |
| CACCATTATAAGGGAGTTTG+TGG | 0.403484 | 3_3:+78214767 | None:intergenic |
| TAAACGCGTTGGAGCTTCTT+GGG | 0.404146 | 3_3:-78213868 | Msa0475150:CDS |
| GGTGGTGGAAACGTTCATTC+TGG | 0.406848 | 3_3:-78214005 | Msa0475150:CDS |
| ATATAGCAGGTTCTTGATAA+TGG | 0.407334 | 3_3:-78214371 | Msa0475150:intron |
| TGTATCTTGATTGGCATCTC+AGG | 0.407746 | 3_3:+78213672 | None:intergenic |
| TTTGGTAGAGTCTGGCAATC+TGG | 0.408366 | 3_3:-78213762 | Msa0475150:CDS |
| CATTTCAGCATCTTTAACAT+TGG | 0.413522 | 3_3:-78212994 | Msa0475150:three_prime_UTR |
| TGAAATGGAGATGGAAAAGA+GGG | 0.414739 | 3_3:-78213829 | Msa0475150:CDS |
| GAAAGGGATTGTTTGTGCTT+AGG | 0.422494 | 3_3:+78215730 | None:intergenic |
| ATTAGCAAGTGAATCGGGTT+TGG | 0.424905 | 3_3:+78216406 | None:intergenic |
| GCGAGAGAGAAAGGTGGAAA+GGG | 0.425301 | 3_3:+78215714 | None:intergenic |
| CAGCAGGCACAAAAGAAATA+CGG | 0.429488 | 3_3:+78214033 | None:intergenic |
| GTCTCCCATTCAAACAAGTC+AGG | 0.429767 | 3_3:-78213912 | Msa0475150:CDS |
| TTGATACCAGGCAAAAGAAC+TGG | 0.431097 | 3_3:+78215570 | None:intergenic |
| TGGTAAATCTTCTTTACCTT+CGG | 0.431171 | 3_3:-78214966 | Msa0475150:CDS |
| TTGAAATGGAGATGGAAAAG+AGG | 0.435852 | 3_3:-78213830 | Msa0475150:CDS |
| CTCGCCCATTGTTGTGGGTG+TGG | 0.438523 | 3_3:+78212887 | None:intergenic |
| AACACATTGTCCTGTCTGTT+CGG | 0.439783 | 3_3:+78212630 | None:intergenic |
| TGACCCACACCCACAACAAT+GGG | 0.440596 | 3_3:-78212891 | Msa0475150:three_prime_UTR |
| CTAGAAGGTTATAGAGGTAA+AGG | 0.445722 | 3_3:-78212774 | Msa0475150:three_prime_UTR |
| TGGAGAGCTCATCAATATCT+TGG | 0.452093 | 3_3:+78215590 | None:intergenic |
| AATAACAGTCGGACCTATTG+AGG | 0.453038 | 3_3:+78212736 | None:intergenic |
| GTGCGTTCATGTTGATCCTA+AGG | 0.458451 | 3_3:-78212940 | Msa0475150:three_prime_UTR |
| AAAAGAATCCTTTGATAATG+AGG | 0.462400 | 3_3:-78215882 | Msa0475150:exon |
| TTCCTATTAGCAAGTGAATC+GGG | 0.463457 | 3_3:+78216401 | None:intergenic |
| ATTCTGGAGCACCTCCGCCT+TGG | 0.463611 | 3_3:-78213989 | Msa0475150:CDS |
| GAATCAAGTTGAGGAGTAAG+AGG | 0.465438 | 3_3:+78215643 | None:intergenic |
| CATCGGCACCCAGAAATTCC+AGG | 0.467591 | 3_3:-78216289 | Msa0475150:intron |
| GTTCCTATTAGCAAGTGAAT+CGG | 0.467606 | 3_3:+78216400 | None:intergenic |
| GACCAACTAGTGTGACTAGA+AGG | 0.470923 | 3_3:-78212789 | Msa0475150:three_prime_UTR |
| AGAAAAGAGAAAGATTGAAA+TGG | 0.474332 | 3_3:-78213844 | Msa0475150:CDS |
| ATCCAGAAAAGAATTTGAAA+AGG | 0.475633 | 3_3:-78213727 | Msa0475150:CDS |
| GAGACAAGGTCTCCTAAAAC+AGG | 0.485901 | 3_3:+78213930 | None:intergenic |
| TTGCAAAATGAGGAAAGTCC+TGG | 0.489221 | 3_3:-78215187 | Msa0475150:CDS |
| AAAGGCAAAACAACATTTGA+AGG | 0.492186 | 3_3:+78215064 | None:intergenic |
| GCCTATAAATGACCCTCAAT+AGG | 0.492307 | 3_3:-78212749 | Msa0475150:three_prime_UTR |
| AGCGAGAGAGAAAGGTGGAA+AGG | 0.493638 | 3_3:+78215713 | None:intergenic |
| AGTTGAGGAGTAAGAGGGGA+AGG | 0.493950 | 3_3:+78215649 | None:intergenic |
| AAGCGAGTTTGAGTTCTGTA+AGG | 0.495349 | 3_3:-78215797 | Msa0475150:CDS |
| TCTTCAGGACACTCTGGAGT+TGG | 0.495973 | 3_3:-78215010 | Msa0475150:CDS |
| TCGCCCATTGTTGTGGGTGT+GGG | 0.496105 | 3_3:+78212888 | None:intergenic |
| TCACATGTTGTACACTTGCT+AGG | 0.496306 | 3_3:+78215448 | None:intergenic |
| AACACACCAGAAGCGATTAC+GGG | 0.499104 | 3_3:+78215621 | None:intergenic |
| GGAAAGAATGTGATGCCAAC+TGG | 0.499236 | 3_3:-78213794 | Msa0475150:CDS |
| ACCGATCTGAGAGCGAGAGC+CGG | 0.500701 | 3_3:-78215858 | Msa0475150:CDS |
| AAAACGCAGCGGCTCTAAGT+TGG | 0.503334 | 3_3:-78216313 | Msa0475150:five_prime_UTR |
| TTGCTTTAGGCTTGGAACTC+CGG | 0.505550 | 3_3:+78215839 | None:intergenic |
| ACAACCCTCGCCCATTGTTG+TGG | 0.506483 | 3_3:+78212881 | None:intergenic |
| AGAAGCTTCATTGCAAAATG+AGG | 0.508478 | 3_3:-78215197 | Msa0475150:CDS |
| CAACCCTCGCCCATTGTTGT+GGG | 0.511402 | 3_3:+78212882 | None:intergenic |
| TGCGTTCATGTTGATCCTAA+GGG | 0.511458 | 3_3:-78212939 | Msa0475150:three_prime_UTR |
| GAGAAAGATTGAAATGGAGA+TGG | 0.511805 | 3_3:-78213838 | Msa0475150:CDS |
| AGGTCTCCTAAAACAGGCAT+CGG | 0.515223 | 3_3:+78213936 | None:intergenic |
| CCAAGCCTAAAGCAAGCACA+AGG | 0.527399 | 3_3:-78215831 | Msa0475150:CDS |
| TGCAAAATCCTGCAAAGCAA+GGG | 0.528151 | 3_3:+78214922 | None:intergenic |
| TACGGCCAGTCGAGTTCAGT+TGG | 0.535216 | 3_3:+78216355 | None:intergenic |
| ACCTTATATTAGCAAAAGAA+TGG | 0.535376 | 3_3:-78213649 | Msa0475150:intron |
| ATCAAGTTGAGGAGTAAGAG+GGG | 0.536655 | 3_3:+78215645 | None:intergenic |
| TTGACCCACACCCACAACAA+TGG | 0.537577 | 3_3:-78212892 | Msa0475150:three_prime_UTR |
| TGATTATGGATATCACTTGA+AGG | 0.537807 | 3_3:+78215151 | None:intergenic |
| TGTGCTTAGGAAAATATTTG+TGG | 0.539896 | 3_3:+78215743 | None:intergenic |
| AAAGAATCCTTTGATAATGA+GGG | 0.541061 | 3_3:-78215881 | Msa0475150:exon |
| AATATTTGTGGCGAAGACCT+TGG | 0.541717 | 3_3:+78215755 | None:intergenic |
| CTGCAAAATCCTGCAAAGCA+AGG | 0.542365 | 3_3:+78214921 | None:intergenic |
| TGGTGGCACAGTGGATCAGC+TGG | 0.546120 | 3_3:-78215397 | Msa0475150:CDS |
| AGCAGGCACAAAAGAAATAC+GGG | 0.546736 | 3_3:+78214034 | None:intergenic |
| TCCGGCTCTCGCTCTCAGAT+CGG | 0.546924 | 3_3:+78215857 | None:intergenic |
| GTGCTATAAAACTACCATCA+TGG | 0.547893 | 3_3:+78212704 | None:intergenic |
| TGCTTTGTGTCTCAGCTGAA+CGG | 0.550116 | 3_3:-78214795 | Msa0475150:intron |
| GTATCCTCTTCAGGACACTC+TGG | 0.557679 | 3_3:-78215016 | Msa0475150:CDS |
| CCCTCAGTTGTTTCAAACCA+AGG | 0.557837 | 3_3:+78213972 | None:intergenic |
| GCTGACCAACTGAACTCGAC+TGG | 0.560747 | 3_3:-78216360 | Msa0475150:five_prime_UTR |
| GTGTGACTAGAAGGTTATAG+AGG | 0.561752 | 3_3:-78212780 | Msa0475150:three_prime_UTR |
| AACCTTCTAGTCACACTAGT+TGG | 0.562759 | 3_3:+78212787 | None:intergenic |
| CACACCCACAACAATGGGCG+AGG | 0.567124 | 3_3:-78212886 | Msa0475150:three_prime_UTR |
| GGTTCTTGATAATGGTAAAG+TGG | 0.568202 | 3_3:-78214363 | Msa0475150:CDS |
| TATAAAACTACCATCATGGC+AGG | 0.569398 | 3_3:+78212708 | None:intergenic |
| GGTCTCCTAAAACAGGCATC+GGG | 0.570549 | 3_3:+78213937 | None:intergenic |
| GTTGTTTCAAACCAAGGCGG+AGG | 0.570570 | 3_3:+78213978 | None:intergenic |
| TCATTCGTGTGGCAGTGTAA+AGG | 0.570708 | 3_3:+78215046 | None:intergenic |
| ATAACAGTCGGACCTATTGA+GGG | 0.570897 | 3_3:+78212737 | None:intergenic |
| TTTGAAGCGAGAGAGAAAGG+TGG | 0.571574 | 3_3:+78215708 | None:intergenic |
| CAAAGCAAGGGTATTCACAC+TGG | 0.571589 | 3_3:+78214934 | None:intergenic |
| AACTCCAGAGTGTCCTGAAG+AGG | 0.572593 | 3_3:+78215012 | None:intergenic |
| GTGCCTGCTGAAAATGGTGG+TGG | 0.572846 | 3_3:-78214020 | Msa0475150:CDS |
| TTATTTGAATCCTGCCATGA+TGG | 0.576942 | 3_3:-78212718 | Msa0475150:three_prime_UTR |
| GGTGGACAATGGTCAAGCAA+TGG | 0.579780 | 3_3:-78214748 | Msa0475150:CDS |
| TTCTGATAATGACGTTGCAA+AGG | 0.582910 | 3_3:-78215361 | Msa0475150:intron |
| AGCGGAGAGAGCGGTCAGCA+AGG | 0.586780 | 3_3:-78214338 | Msa0475150:intron |
| AGCGGCTCTAAGTTGGTCAT+CGG | 0.589558 | 3_3:-78216306 | Msa0475150:five_prime_UTR |
| GATCGGTCCCTCATTATCAA+AGG | 0.595663 | 3_3:+78215874 | None:intergenic |
| AAAAGAGGGGAGAGATTGTG+AGG | 0.596176 | 3_3:-78213815 | Msa0475150:CDS |
| AAGTTGAATCCTAAACGCGT+TGG | 0.598248 | 3_3:-78213879 | Msa0475150:CDS |
| ATGTAACATGAAATATACAA+TGG | 0.598612 | 3_3:+78212825 | None:intergenic |
| ACCAAAATTAGGAAGCCAGT+TGG | 0.599512 | 3_3:+78213779 | None:intergenic |
| AATCAAGTTGAGGAGTAAGA+GGG | 0.603161 | 3_3:+78215644 | None:intergenic |
| TCTCCCATTCAAACAAGTCA+GGG | 0.611755 | 3_3:-78213911 | Msa0475150:CDS |
| ACTTGTTTGAATGGGAGACA+AGG | 0.612462 | 3_3:+78213916 | None:intergenic |
| CCTTGGTTTGAAACAACTGA+GGG | 0.618549 | 3_3:-78213972 | Msa0475150:CDS |
| TTTGTGCCTGCTGAAAATGG+TGG | 0.618734 | 3_3:-78214023 | Msa0475150:CDS |
| GGCAGGATTCAAATAACAGT+CGG | 0.622314 | 3_3:+78212725 | None:intergenic |
| ACACTGGAGCACGCTTCCGA+AGG | 0.624754 | 3_3:+78214950 | None:intergenic |
| CGATTACGGGAATCAAGTTG+AGG | 0.631280 | 3_3:+78215634 | None:intergenic |
| TCCCTTATAATGGTGGACAA+TGG | 0.631924 | 3_3:-78214759 | Msa0475150:CDS |
| CTAGTCACACTAGTTGGTCA+CGG | 0.632777 | 3_3:+78212793 | None:intergenic |
| GCCTTGGTTTGAAACAACTG+AGG | 0.637234 | 3_3:-78213973 | Msa0475150:CDS |
| TGGATACTCATGTAATAAAG+CGG | 0.638979 | 3_3:-78214728 | Msa0475150:intron |
| GAATCGTCAGAGTTGAAGAA+CGG | 0.647339 | 3_3:+78216540 | None:intergenic |
| TTTGAGGAAGAAGCGAACAT+CGG | 0.647723 | 3_3:+78215675 | None:intergenic |
| GCGTTCATGTTGATCCTAAG+GGG | 0.650976 | 3_3:-78212938 | Msa0475150:three_prime_UTR |
| ACACCCACAACAATGGGCGA+GGG | 0.652288 | 3_3:-78212885 | Msa0475150:three_prime_UTR |
| GCGATTAATGACTATGCAAG+TGG | 0.652394 | 3_3:-78213070 | Msa0475150:exon |
| TCTGGTGGCAAACATGTTCG+GGG | 0.652788 | 3_3:-78213039 | Msa0475150:three_prime_UTR |
| CACAAACTCCCTTATAATGG+TGG | 0.655091 | 3_3:-78214766 | Msa0475150:CDS |
| CGATTAATGACTATGCAAGT+GGG | 0.658859 | 3_3:-78213069 | Msa0475150:exon |
| TGTGAGTGCAGTGGGACAAG+AGG | 0.664647 | 3_3:-78215237 | Msa0475150:intron |
| AAAGTGGTCAGCGGAGAGAG+CGG | 0.667269 | 3_3:-78214347 | Msa0475150:CDS |
| ATACCTGATACTCATTCGTG+TGG | 0.672100 | 3_3:+78215035 | None:intergenic |
| TTGCAGCGGATGGATAATGG+TGG | 0.678925 | 3_3:-78213092 | Msa0475150:intron |
| TGCAAAATAAATCACGACCA+AGG | 0.680383 | 3_3:-78215772 | Msa0475150:CDS |
| TTGGAAATATGGTGGCACAG+TGG | 0.693464 | 3_3:-78215406 | Msa0475150:CDS |
| GATAATGGTAAAGTGGTCAG+CGG | 0.694408 | 3_3:-78214356 | Msa0475150:CDS |
| AAGCTGATCGCAAAACGCAG+CGG | 0.702485 | 3_3:-78216324 | Msa0475150:five_prime_UTR |
| GAAATGGAGATGGAAAAGAG+GGG | 0.718016 | 3_3:-78213828 | Msa0475150:CDS |
| CAAGTGGGTGAAATTTCTGG+TGG | 0.728035 | 3_3:-78213054 | Msa0475150:three_prime_UTR |
| CAAGCCTAAAGCAAGCACAA+GGG | 0.732388 | 3_3:-78215830 | Msa0475150:CDS |
| TCAGTTGTTTCAAACCAAGG+CGG | 0.741048 | 3_3:+78213975 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTCAACAAATAATTTT+TGG | + | chr3_3:78212623-78212642 | None:intergenic | 15.0% |
| !!! | ACAAATAAGTTTTTGAATAA+GGG | + | chr3_3:78213077-78213096 | None:intergenic | 15.0% |
| !!! | AACAAATAAGTTTTTGAATA+AGG | + | chr3_3:78213078-78213097 | None:intergenic | 15.0% |
| !!! | AGAAAATTTTAGATAACTTA+AGG | + | chr3_3:78214626-78214645 | None:intergenic | 15.0% |
| !! | TTCTTATAATTCTATAAAGT+TGG | - | chr3_3:78214902-78214921 | Msa0475150:intron | 15.0% |
| !! | TCTTATAATTCTATAAAGTT+GGG | - | chr3_3:78214903-78214922 | Msa0475150:intron | 15.0% |
| !!! | AGATAAAACATTTTTTGAAA+GGG | - | chr3_3:78215769-78215788 | Msa0475150:CDS | 15.0% |
| !!! | AACAAATAATATTTTGATAG+CGG | - | chr3_3:78215850-78215869 | Msa0475150:CDS | 15.0% |
| !! | TGAATAATTAATGATTTCTT+TGG | - | chr3_3:78215975-78215994 | Msa0475150:intron | 15.0% |
| !!! | CTAAAAATATTTTACCCATT+AGG | - | chr3_3:78212679-78212698 | Msa0475150:three_prime_UTR | 20.0% |
| !!! | TAATAGAATACCAACTTTTT+TGG | + | chr3_3:78212738-78212757 | None:intergenic | 20.0% |
| !! | ATAAAGTCTCAAATTTGAAA+AGG | + | chr3_3:78213171-78213190 | None:intergenic | 20.0% |
| !!! | ATTATCAAAGGATTCTTTTT+CGG | + | chr3_3:78213299-78213318 | None:intergenic | 20.0% |
| !! | AAAAACAGACATAAGATATA+TGG | + | chr3_3:78213849-78213868 | None:intergenic | 20.0% |
| !!! | ATATCTTATGTCTGTTTTTT+AGG | - | chr3_3:78213850-78213869 | Msa0475150:CDS | 20.0% |
| !!! | TATCTTATGTCTGTTTTTTA+GGG | - | chr3_3:78213851-78213870 | Msa0475150:CDS | 20.0% |
| !! | AAGATTTACCAATATCTAAA+AGG | + | chr3_3:78214207-78214226 | None:intergenic | 20.0% |
| !! | TGTAATTTAAACACTGATAA+AGG | - | chr3_3:78214771-78214790 | Msa0475150:CDS | 20.0% |
| !! | CTTATAATTCTATAAAGTTG+GGG | - | chr3_3:78214904-78214923 | Msa0475150:intron | 20.0% |
| !!! | CAGATAAAACATTTTTTGAA+AGG | - | chr3_3:78215768-78215787 | Msa0475150:CDS | 20.0% |
| !!! | ACAAATAATATTTTGATAGC+GGG | - | chr3_3:78215851-78215870 | Msa0475150:CDS | 20.0% |
| !! | GTTCAAATATTTACAGATTA+AGG | + | chr3_3:78216055-78216074 | None:intergenic | 20.0% |
| !! | ATGTAACATGAAATATACAA+TGG | + | chr3_3:78216360-78216379 | None:intergenic | 20.0% |
| ! | TTGAGAAAATCAATCCTAAT+GGG | + | chr3_3:78212696-78212715 | None:intergenic | 25.0% |
| ! | ATTGAGAAAATCAATCCTAA+TGG | + | chr3_3:78212697-78212716 | None:intergenic | 25.0% |
| !! | TAATTTTCAGCCAAAAAAGT+TGG | - | chr3_3:78212725-78212744 | Msa0475150:three_prime_UTR | 25.0% |
| ! | AAAAAAAACCTGGAATTTCT+GGG | + | chr3_3:78212904-78212923 | None:intergenic | 25.0% |
| ! | AGGAAAATACAGAGTAAAAA+GGG | + | chr3_3:78212931-78212950 | None:intergenic | 25.0% |
| ! | AAGGAAAATACAGAGTAAAA+AGG | + | chr3_3:78212932-78212951 | None:intergenic | 25.0% |
| !!! | ATGTTTAAGTTTTCTTTCTG+TGG | - | chr3_3:78213105-78213124 | Msa0475150:intron | 25.0% |
| ! | TACTTTACTGTTCTAATAAG+TGG | - | chr3_3:78213200-78213219 | Msa0475150:intron | 25.0% |
| !!! | AAAAGAATCCTTTGATAATG+AGG | - | chr3_3:78213300-78213319 | Msa0475150:intron | 25.0% |
| !!! | AAAGAATCCTTTGATAATGA+GGG | - | chr3_3:78213301-78213320 | Msa0475150:intron | 25.0% |
| ! | GAAAACAAAAAATTGATACC+AGG | + | chr3_3:78213627-78213646 | None:intergenic | 25.0% |
| !!! | ATCTTATGTCTGTTTTTTAG+GGG | - | chr3_3:78213852-78213871 | Msa0475150:CDS | 25.0% |
| !!! | CAATGAAGCTTCTTTTTTAA+GGG | + | chr3_3:78213978-78213997 | None:intergenic | 25.0% |
| ! | TTTCATTGTTCGATTGATTA+TGG | + | chr3_3:78214048-78214067 | None:intergenic | 25.0% |
| !! | TCTTCAAATATTTTGCACAT+AGG | + | chr3_3:78214981-78215000 | None:intergenic | 25.0% |
| ! | AGAAAAGAGAAAGATTGAAA+TGG | - | chr3_3:78215338-78215357 | Msa0475150:intron | 25.0% |
| ! | ATCCAGAAAAGAATTTGAAA+AGG | - | chr3_3:78215455-78215474 | Msa0475150:CDS | 25.0% |
| ! | ATATAAGGTTGTATCTTGAT+TGG | + | chr3_3:78215522-78215541 | None:intergenic | 25.0% |
| ! | ACCTTATATTAGCAAAAGAA+TGG | - | chr3_3:78215533-78215552 | Msa0475150:intron | 25.0% |
| !! | ACCATTCTTTTGCTAATATA+AGG | + | chr3_3:78215537-78215556 | None:intergenic | 25.0% |
| ! | CATCAATGATTGTGATAATA+GGG | - | chr3_3:78216331-78216350 | Msa0475150:five_prime_UTR | 25.0% |
| !! | AGGATTGATTTTCTCAATTC+TGG | - | chr3_3:78212699-78212718 | Msa0475150:three_prime_UTR | 30.0% |
| !!! | CGATCAGCTTTTGATTTTTA+CGG | + | chr3_3:78212848-78212867 | None:intergenic | 30.0% |
| GAAAAAAAACCTGGAATTTC+TGG | + | chr3_3:78212905-78212924 | None:intergenic | 30.0% | |
| GGAAAATACAGAGTAAAAAG+GGG | + | chr3_3:78212930-78212949 | None:intergenic | 30.0% | |
| ! | TAAGTTTTCTTTCTGTGGAA+TGG | - | chr3_3:78213110-78213129 | Msa0475150:intron | 30.0% |
| ! | AAGTTTTCTTTCTGTGGAAT+GGG | - | chr3_3:78213111-78213130 | Msa0475150:intron | 30.0% |
| AGTCTCAAATTTGAAAAGGA+TGG | + | chr3_3:78213167-78213186 | None:intergenic | 30.0% | |
| TACTGTTCTAATAAGTGGTA+AGG | - | chr3_3:78213205-78213224 | Msa0475150:intron | 30.0% | |
| TACGAACAAAAACAACATAG+TGG | + | chr3_3:78213270-78213289 | None:intergenic | 30.0% | |
| !!! | ACTATGTTGTTTTTGTTCGT+AGG | - | chr3_3:78213269-78213288 | Msa0475150:intron | 30.0% |
| !!! | CTATGTTGTTTTTGTTCGTA+GGG | - | chr3_3:78213270-78213289 | Msa0475150:intron | 30.0% |
| TGTGCTTAGGAAAATATTTG+TGG | + | chr3_3:78213442-78213461 | None:intergenic | 30.0% | |
| CAATTTATGAACTATTGTCC+AGG | - | chr3_3:78213646-78213665 | Msa0475150:intron | 30.0% | |
| CAAATTAGCTAAAGAAAACC+TGG | + | chr3_3:78213667-78213686 | None:intergenic | 30.0% | |
| !! | ATAAGTTGAAGCACTTCTTT+TGG | - | chr3_3:78213757-78213776 | Msa0475150:CDS | 30.0% |
| !! | AAGCACTTCTTTTGGAAATA+TGG | - | chr3_3:78213765-78213784 | Msa0475150:CDS | 30.0% |
| !!! | GCAATGAAGCTTCTTTTTTA+AGG | + | chr3_3:78213979-78213998 | None:intergenic | 30.0% |
| TGATTATGGATATCACTTGA+AGG | + | chr3_3:78214034-78214053 | None:intergenic | 30.0% | |
| AAAGGCAAAACAACATTTGA+AGG | + | chr3_3:78214121-78214140 | None:intergenic | 30.0% | |
| !!! | AATACTGGCCTTTTAGATAT+TGG | - | chr3_3:78214196-78214215 | Msa0475150:intron | 30.0% |
| TGGTAAATCTTCTTTACCTT+CGG | - | chr3_3:78214216-78214235 | Msa0475150:intron | 30.0% | |
| AATGACATTTCCAATAGACA+GGG | + | chr3_3:78214296-78214315 | None:intergenic | 30.0% | |
| AAATGACATTTCCAATAGAC+AGG | + | chr3_3:78214297-78214316 | None:intergenic | 30.0% | |
| TTACAATTATCGTTCACTTG+TGG | - | chr3_3:78214325-78214344 | Msa0475150:intron | 30.0% | |
| TACAATTATCGTTCACTTGT+GGG | - | chr3_3:78214326-78214345 | Msa0475150:intron | 30.0% | |
| TGGATACTCATGTAATAAAG+CGG | - | chr3_3:78214454-78214473 | Msa0475150:intron | 30.0% | |
| ! | TTTTCTTGTCTTCATGATCA+AGG | - | chr3_3:78214640-78214659 | Msa0475150:intron | 30.0% |
| GCATTTCTTATGAATATAGC+AGG | - | chr3_3:78214798-78214817 | Msa0475150:intron | 30.0% | |
| ATATAGCAGGTTCTTGATAA+TGG | - | chr3_3:78214811-78214830 | Msa0475150:intron | 30.0% | |
| GACTTGAATGCAGAAAAAAA+AGG | - | chr3_3:78214999-78215018 | Msa0475150:CDS | 30.0% | |
| ! | CAGAAAAAAAAGGTTTTCTG+TGG | - | chr3_3:78215009-78215028 | Msa0475150:CDS | 30.0% |
| CTCTTAGATAGATAACATTG+AGG | - | chr3_3:78215044-78215063 | Msa0475150:CDS | 30.0% | |
| TTAGATAGATAACATTGAGG+AGG | - | chr3_3:78215047-78215066 | Msa0475150:CDS | 30.0% | |
| ! | CTCCTTTTCAAATTCTTTTC+TGG | + | chr3_3:78215460-78215479 | None:intergenic | 30.0% |
| !!! | CATTTTTTGAAAGGGATTTC+TGG | - | chr3_3:78215777-78215796 | Msa0475150:CDS | 30.0% |
| CATTTCAGCATCTTTAACAT+TGG | - | chr3_3:78216188-78216207 | Msa0475150:intron | 30.0% | |
| CTTTAACATTGGAAACTTGA+TGG | - | chr3_3:78216199-78216218 | Msa0475150:intron | 30.0% | |
| GCATCAATGATTGTGATAAT+AGG | - | chr3_3:78216330-78216349 | Msa0475150:five_prime_UTR | 30.0% | |
| TTCCTATTAGCAAGTGAATC+GGG | + | chr3_3:78212784-78212803 | None:intergenic | 35.0% | |
| GTTCCTATTAGCAAGTGAAT+CGG | + | chr3_3:78212785-78212804 | None:intergenic | 35.0% | |
| AAAGGGGAAGAAAAAAAACC+TGG | + | chr3_3:78212914-78212933 | None:intergenic | 35.0% | |
| TTTCTGTGGAATGGGAATAT+GGG | - | chr3_3:78213119-78213138 | Msa0475150:intron | 35.0% | |
| TGCAAAATAAATCACGACCA+AGG | - | chr3_3:78213410-78213429 | Msa0475150:intron | 35.0% | |
| !! | AATCAAGTTGAGGAGTAAGA+GGG | + | chr3_3:78213541-78213560 | None:intergenic | 35.0% |
| !! | CACTTCTTTTGGAAATATGG+TGG | - | chr3_3:78213768-78213787 | Msa0475150:CDS | 35.0% |
| ! | TTCTGATAATGACGTTGCAA+AGG | - | chr3_3:78213821-78213840 | Msa0475150:CDS | 35.0% |
| TAATTTCTTTGTGAGTGCAG+TGG | - | chr3_3:78213936-78213955 | Msa0475150:CDS | 35.0% | |
| AATTTCTTTGTGAGTGCAGT+GGG | - | chr3_3:78213937-78213956 | Msa0475150:CDS | 35.0% | |
| AGAAGCTTCATTGCAAAATG+AGG | - | chr3_3:78213985-78214004 | Msa0475150:CDS | 35.0% | |
| ACCATTGTCCACCATTATAA+GGG | + | chr3_3:78214427-78214446 | None:intergenic | 35.0% | |
| AAAGCGGTAAGTTTATGTGT+TGG | - | chr3_3:78214470-78214489 | Msa0475150:intron | 35.0% | |
| AAGCGGTAAGTTTATGTGTT+GGG | - | chr3_3:78214471-78214490 | Msa0475150:intron | 35.0% | |
| TTCAGACTTTCAGCAATTGT+TGG | - | chr3_3:78214554-78214573 | Msa0475150:intron | 35.0% | |
| !! | TTGTTGGTTGGTGATTTCAT+TGG | - | chr3_3:78214570-78214589 | Msa0475150:intron | 35.0% |
| TAGAAAGCTACAGAACAAGA+GGG | + | chr3_3:78214748-78214767 | None:intergenic | 35.0% | |
| TTAGAAAGCTACAGAACAAG+AGG | + | chr3_3:78214749-78214768 | None:intergenic | 35.0% | |
| !! | GGTTCTTGATAATGGTAAAG+TGG | - | chr3_3:78214819-78214838 | Msa0475150:intron | 35.0% |
| ! | ACTAATGACTCTGCATTTTC+AGG | - | chr3_3:78215111-78215130 | Msa0475150:CDS | 35.0% |
| GAGAAAGATTGAAATGGAGA+TGG | - | chr3_3:78215344-78215363 | Msa0475150:intron | 35.0% | |
| TTGAAATGGAGATGGAAAAG+AGG | - | chr3_3:78215352-78215371 | Msa0475150:intron | 35.0% | |
| TGAAATGGAGATGGAAAAGA+GGG | - | chr3_3:78215353-78215372 | Msa0475150:intron | 35.0% | |
| !! | TTCCTAATTTTGGTAGAGTC+TGG | - | chr3_3:78215412-78215431 | Msa0475150:CDS | 35.0% |
| !!! | TATTTTGATAGCGGGTTACT+AGG | - | chr3_3:78215859-78215878 | Msa0475150:CDS | 35.0% |
| CGATTAATGACTATGCAAGT+GGG | - | chr3_3:78216113-78216132 | Msa0475150:intron | 35.0% | |
| CTAGAAGGTTATAGAGGTAA+AGG | - | chr3_3:78216408-78216427 | Msa0475150:intron | 35.0% | |
| ACCTATTGAGGGTCATTTAT+AGG | + | chr3_3:78216437-78216456 | None:intergenic | 35.0% | |
| TTATTTGAATCCTGCCATGA+TGG | - | chr3_3:78216464-78216483 | Msa0475150:intron | 35.0% | |
| TATAAAACTACCATCATGGC+AGG | + | chr3_3:78216477-78216496 | None:intergenic | 35.0% | |
| GTGCTATAAAACTACCATCA+TGG | + | chr3_3:78216481-78216500 | None:intergenic | 35.0% | |
| !!! | TGGTAGTTTTATAGCACAAG+AGG | - | chr3_3:78216484-78216503 | Msa0475150:intron | 35.0% |
| GAATCGTCAGAGTTGAAGAA+CGG | + | chr3_3:78212645-78212664 | None:intergenic | 40.0% | |
| ATTAGCAAGTGAATCGGGTT+TGG | + | chr3_3:78212779-78212798 | None:intergenic | 40.0% | |
| ! | AACCCGATTCACTTGCTAAT+AGG | - | chr3_3:78212779-78212798 | Msa0475150:three_prime_UTR | 40.0% |
| ACGTGAACAAATGCAGCAAT+TGG | + | chr3_3:78213044-78213063 | None:intergenic | 40.0% | |
| CTTTCTGTGGAATGGGAATA+TGG | - | chr3_3:78213118-78213137 | Msa0475150:intron | 40.0% | |
| TTCTGTGGAATGGGAATATG+GGG | - | chr3_3:78213120-78213139 | Msa0475150:intron | 40.0% | |
| ! | AAGCGAGTTTGAGTTCTGTA+AGG | - | chr3_3:78213385-78213404 | Msa0475150:intron | 40.0% |
| AATATTTGTGGCGAAGACCT+TGG | + | chr3_3:78213430-78213449 | None:intergenic | 40.0% | |
| GAAAGGGATTGTTTGTGCTT+AGG | + | chr3_3:78213455-78213474 | None:intergenic | 40.0% | |
| !!! | GTTTTTGAAGCGAGAGAGAA+AGG | + | chr3_3:78213480-78213499 | None:intergenic | 40.0% |
| TTTGAGGAAGAAGCGAACAT+CGG | + | chr3_3:78213510-78213529 | None:intergenic | 40.0% | |
| !! | ATCAAGTTGAGGAGTAAGAG+GGG | + | chr3_3:78213540-78213559 | None:intergenic | 40.0% |
| !! | GAATCAAGTTGAGGAGTAAG+AGG | + | chr3_3:78213542-78213561 | None:intergenic | 40.0% |
| AAACACACCAGAAGCGATTA+CGG | + | chr3_3:78213565-78213584 | None:intergenic | 40.0% | |
| TGGAGAGCTCATCAATATCT+TGG | + | chr3_3:78213595-78213614 | None:intergenic | 40.0% | |
| TTGATACCAGGCAAAAGAAC+TGG | + | chr3_3:78213615-78213634 | None:intergenic | 40.0% | |
| TGAATGTTCTCTTGTTCTCG+AGG | - | chr3_3:78213690-78213709 | Msa0475150:CDS | 40.0% | |
| TCACATGTTGTACACTTGCT+AGG | + | chr3_3:78213737-78213756 | None:intergenic | 40.0% | |
| TTGCAAAATGAGGAAAGTCC+TGG | - | chr3_3:78213995-78214014 | Msa0475150:CDS | 40.0% | |
| AGGATACGAGTTCACAGAAT+TGG | + | chr3_3:78214101-78214120 | None:intergenic | 40.0% | |
| ATACCTGATACTCATTCGTG+TGG | + | chr3_3:78214150-78214169 | None:intergenic | 40.0% | |
| TGCAAAATCCTGCAAAGCAA+GGG | + | chr3_3:78214263-78214282 | None:intergenic | 40.0% | |
| AGACACAAAGCATAACCACA+CGG | + | chr3_3:78214379-78214398 | None:intergenic | 40.0% | |
| AGCCACAAACTCCCTTATAA+TGG | - | chr3_3:78214413-78214432 | Msa0475150:intron | 40.0% | |
| CACCATTATAAGGGAGTTTG+TGG | + | chr3_3:78214418-78214437 | None:intergenic | 40.0% | |
| CACAAACTCCCTTATAATGG+TGG | - | chr3_3:78214416-78214435 | Msa0475150:intron | 40.0% | |
| !! | TCCCTTATAATGGTGGACAA+TGG | - | chr3_3:78214423-78214442 | Msa0475150:intron | 40.0% |
| GACCATTGTCCACCATTATA+AGG | + | chr3_3:78214428-78214447 | None:intergenic | 40.0% | |
| AGCGGTAAGTTTATGTGTTG+GGG | - | chr3_3:78214472-78214491 | Msa0475150:intron | 40.0% | |
| TTTATGTGTTGGGGGAAAGA+GGG | - | chr3_3:78214481-78214500 | Msa0475150:intron | 40.0% | |
| GACTTTCAGCAATTGTTGGT+TGG | - | chr3_3:78214558-78214577 | Msa0475150:intron | 40.0% | |
| AGAAAGCTACAGAACAAGAG+GGG | + | chr3_3:78214747-78214766 | None:intergenic | 40.0% | |
| ! | GATAATGGTAAAGTGGTCAG+CGG | - | chr3_3:78214826-78214845 | Msa0475150:intron | 40.0% |
| ! | GTTTTCTGTGGCATTATGAC+TGG | - | chr3_3:78215021-78215040 | Msa0475150:CDS | 40.0% |
| AGCAGGCACAAAAGAAATAC+GGG | + | chr3_3:78215151-78215170 | None:intergenic | 40.0% | |
| CAGCAGGCACAAAAGAAATA+CGG | + | chr3_3:78215152-78215171 | None:intergenic | 40.0% | |
| ! | TCTTTTGTGCCTGCTGAAAA+TGG | - | chr3_3:78215156-78215175 | Msa0475150:CDS | 40.0% |
| ! | TCAGTTGTTTCAAACCAAGG+CGG | + | chr3_3:78215210-78215229 | None:intergenic | 40.0% |
| ! | CCTTGGTTTGAAACAACTGA+GGG | - | chr3_3:78215210-78215229 | Msa0475150:CDS | 40.0% |
| ACTTGTTTGAATGGGAGACA+AGG | + | chr3_3:78215269-78215288 | None:intergenic | 40.0% | |
| TCTCCCATTCAAACAAGTCA+GGG | - | chr3_3:78215271-78215290 | Msa0475150:intron | 40.0% | |
| !! | CTTCCCTGACTTGTTTGAAT+GGG | + | chr3_3:78215277-78215296 | None:intergenic | 40.0% |
| !! | TCTTCCCTGACTTGTTTGAA+TGG | + | chr3_3:78215278-78215297 | None:intergenic | 40.0% |
| AAGTTGAATCCTAAACGCGT+TGG | - | chr3_3:78215303-78215322 | Msa0475150:intron | 40.0% | |
| GAAATGGAGATGGAAAAGAG+GGG | - | chr3_3:78215354-78215373 | Msa0475150:intron | 40.0% | |
| ACCAAAATTAGGAAGCCAGT+TGG | + | chr3_3:78215406-78215425 | None:intergenic | 40.0% | |
| TGCCAGACTCTACCAAAATT+AGG | + | chr3_3:78215417-78215436 | None:intergenic | 40.0% | |
| TGTATCTTGATTGGCATCTC+AGG | + | chr3_3:78215513-78215532 | None:intergenic | 40.0% | |
| CAACTCTGTAAGTTGTCTCA+TGG | + | chr3_3:78215812-78215831 | None:intergenic | 40.0% | |
| CATGAGACAACTTACAGAGT+TGG | - | chr3_3:78215810-78215829 | Msa0475150:CDS | 40.0% | |
| ! | TGTTCCCTTTTTCTTTGCAG+CGG | - | chr3_3:78216076-78216095 | Msa0475150:intron | 40.0% |
| GCGATTAATGACTATGCAAG+TGG | - | chr3_3:78216112-78216131 | Msa0475150:intron | 40.0% | |
| ATGCAAGTGGGTGAAATTTC+TGG | - | chr3_3:78216125-78216144 | Msa0475150:intron | 40.0% | |
| ! | TTTCTGGTGGCAAACATGTT+CGG | - | chr3_3:78216141-78216160 | Msa0475150:intron | 40.0% |
| TGCGTTCATGTTGATCCTAA+GGG | - | chr3_3:78216243-78216262 | Msa0475150:intron | 40.0% | |
| AACCTTCTAGTCACACTAGT+TGG | + | chr3_3:78216398-78216417 | None:intergenic | 40.0% | |
| GTGTGACTAGAAGGTTATAG+AGG | - | chr3_3:78216402-78216421 | Msa0475150:intron | 40.0% | |
| GCCTATAAATGACCCTCAAT+AGG | - | chr3_3:78216433-78216452 | Msa0475150:five_prime_UTR | 40.0% | |
| ATAACAGTCGGACCTATTGA+GGG | + | chr3_3:78216448-78216467 | None:intergenic | 40.0% | |
| AATAACAGTCGGACCTATTG+AGG | + | chr3_3:78216449-78216468 | None:intergenic | 40.0% | |
| GGCAGGATTCAAATAACAGT+CGG | + | chr3_3:78216460-78216479 | None:intergenic | 40.0% | |
| !! | TTCATTTTTGCCGAACAGAC+AGG | - | chr3_3:78216542-78216561 | Msa0475150:five_prime_UTR | 40.0% |
| AACACATTGTCCTGTCTGTT+CGG | + | chr3_3:78216555-78216574 | None:intergenic | 40.0% | |
| CAGCAATTGGAGAAATCACG+CGG | + | chr3_3:78213031-78213050 | None:intergenic | 45.0% | |
| GATCGGTCCCTCATTATCAA+AGG | + | chr3_3:78213311-78213330 | None:intergenic | 45.0% | |
| ! | TTGCTTTAGGCTTGGAACTC+CGG | + | chr3_3:78213346-78213365 | None:intergenic | 45.0% |
| CAAGCCTAAAGCAAGCACAA+GGG | - | chr3_3:78213352-78213371 | Msa0475150:intron | 45.0% | |
| TTCTCCCTTGTGCTTGCTTT+AGG | + | chr3_3:78213359-78213378 | None:intergenic | 45.0% | |
| ! | TTTGAAGCGAGAGAGAAAGG+TGG | + | chr3_3:78213477-78213496 | None:intergenic | 45.0% |
| !!! | TAAGAGGGGAAGGTGTTTTG+AGG | + | chr3_3:78213526-78213545 | None:intergenic | 45.0% |
| ! | CGATTACGGGAATCAAGTTG+AGG | + | chr3_3:78213551-78213570 | None:intergenic | 45.0% |
| TTGATTCCCGTAATCGCTTC+TGG | - | chr3_3:78213555-78213574 | Msa0475150:intron | 45.0% | |
| AACACACCAGAAGCGATTAC+GGG | + | chr3_3:78213564-78213583 | None:intergenic | 45.0% | |
| TTGGAAATATGGTGGCACAG+TGG | - | chr3_3:78213776-78213795 | Msa0475150:CDS | 45.0% | |
| ! | GAAAGTCCTGGAGCAGTTTT+TGG | - | chr3_3:78214007-78214026 | Msa0475150:CDS | 45.0% |
| TCATTCGTGTGGCAGTGTAA+AGG | + | chr3_3:78214139-78214158 | None:intergenic | 45.0% | |
| GAGTATCAGGTATCCTCTTC+AGG | - | chr3_3:78214157-78214176 | Msa0475150:intron | 45.0% | |
| !! | CACTCTGGAGTTGGAAATAC+TGG | - | chr3_3:78214181-78214200 | Msa0475150:intron | 45.0% |
| !! | CAAAGCAAGGGTATTCACAC+TGG | + | chr3_3:78214251-78214270 | None:intergenic | 45.0% |
| TGTGAATACCCTTGCTTTGC+AGG | - | chr3_3:78214252-78214271 | Msa0475150:intron | 45.0% | |
| CTGCAAAATCCTGCAAAGCA+AGG | + | chr3_3:78214264-78214283 | None:intergenic | 45.0% | |
| ! | CTTGCTTTGCAGGATTTTGC+AGG | - | chr3_3:78214262-78214281 | Msa0475150:intron | 45.0% |
| GGTATGCTTACCCTGTCTAT+TGG | - | chr3_3:78214283-78214302 | Msa0475150:intron | 45.0% | |
| GTTGAGACTTATCTTCCGTG+TGG | - | chr3_3:78214361-78214380 | Msa0475150:CDS | 45.0% | |
| TGCTTTGTGTCTCAGCTGAA+CGG | - | chr3_3:78214387-78214406 | Msa0475150:intron | 45.0% | |
| GCGGTAAGTTTATGTGTTGG+GGG | - | chr3_3:78214473-78214492 | Msa0475150:intron | 45.0% | |
| GTTTATGTGTTGGGGGAAAG+AGG | - | chr3_3:78214480-78214499 | Msa0475150:intron | 45.0% | |
| TTATGTGTTGGGGGAAAGAG+GGG | - | chr3_3:78214482-78214501 | Msa0475150:intron | 45.0% | |
| TTTGTGCCTGCTGAAAATGG+TGG | - | chr3_3:78215159-78215178 | Msa0475150:CDS | 45.0% | |
| ! | TTTCCACCACCATTTTCAGC+AGG | + | chr3_3:78215168-78215187 | None:intergenic | 45.0% |
| ! | GCCTTGGTTTGAAACAACTG+AGG | - | chr3_3:78215209-78215228 | Msa0475150:CDS | 45.0% |
| ! | CCCTCAGTTGTTTCAAACCA+AGG | + | chr3_3:78215213-78215232 | None:intergenic | 45.0% |
| AGGTCTCCTAAAACAGGCAT+CGG | + | chr3_3:78215249-78215268 | None:intergenic | 45.0% | |
| GAGACAAGGTCTCCTAAAAC+AGG | + | chr3_3:78215255-78215274 | None:intergenic | 45.0% | |
| GTCTCCCATTCAAACAAGTC+AGG | - | chr3_3:78215270-78215289 | Msa0475150:intron | 45.0% | |
| TAAACGCGTTGGAGCTTCTT+GGG | - | chr3_3:78215314-78215333 | Msa0475150:intron | 45.0% | |
| AAAAGAGGGGAGAGATTGTG+AGG | - | chr3_3:78215367-78215386 | Msa0475150:CDS | 45.0% | |
| GGAAAGAATGTGATGCCAAC+TGG | - | chr3_3:78215388-78215407 | Msa0475150:CDS | 45.0% | |
| !! | GCCAACTGGCTTCCTAATTT+TGG | - | chr3_3:78215402-78215421 | Msa0475150:CDS | 45.0% |
| TTTGGTAGAGTCTGGCAATC+TGG | - | chr3_3:78215420-78215439 | Msa0475150:CDS | 45.0% | |
| ! | CTTGGCATGGGTTGCAAAAT+GGG | - | chr3_3:78215688-78215707 | Msa0475150:CDS | 45.0% |
| TCACGCCAACATGTCTAGAA+TGG | - | chr3_3:78215729-78215748 | Msa0475150:CDS | 45.0% | |
| TACCGCCATTCTAGACATGT+TGG | + | chr3_3:78215737-78215756 | None:intergenic | 45.0% | |
| GGTTACTAGGTTAGCATGTC+TGG | - | chr3_3:78215872-78215891 | Msa0475150:exon | 45.0% | |
| CCATCCGCTGCAAAGAAAAA+GGG | + | chr3_3:78216083-78216102 | None:intergenic | 45.0% | |
| TCCATCCGCTGCAAAGAAAA+AGG | + | chr3_3:78216084-78216103 | None:intergenic | 45.0% | |
| TCTTTGCAGCGGATGGATAA+TGG | - | chr3_3:78216087-78216106 | Msa0475150:intron | 45.0% | |
| ! | CAAGTGGGTGAAATTTCTGG+TGG | - | chr3_3:78216128-78216147 | Msa0475150:intron | 45.0% |
| TTCTGGTGGCAAACATGTTC+GGG | - | chr3_3:78216142-78216161 | Msa0475150:intron | 45.0% | |
| GTGCGTTCATGTTGATCCTA+AGG | - | chr3_3:78216242-78216261 | Msa0475150:intron | 45.0% | |
| GCGTTCATGTTGATCCTAAG+GGG | - | chr3_3:78216244-78216263 | Msa0475150:intron | 45.0% | |
| ! | ATGACTGCAGTTTTCCCCTT+AGG | + | chr3_3:78216261-78216280 | None:intergenic | 45.0% |
| CTAGTCACACTAGTTGGTCA+CGG | + | chr3_3:78216392-78216411 | None:intergenic | 45.0% | |
| GACCAACTAGTGTGACTAGA+AGG | - | chr3_3:78216393-78216412 | Msa0475150:intron | 45.0% | |
| TGGTCAGCAATCTACTCGAC+AGG | + | chr3_3:78212810-78212829 | None:intergenic | 50.0% | |
| AAGCTGATCGCAAAACGCAG+CGG | - | chr3_3:78212858-78212877 | Msa0475150:three_prime_UTR | 50.0% | |
| !! | AAAACGCAGCGGCTCTAAGT+TGG | - | chr3_3:78212869-78212888 | Msa0475150:three_prime_UTR | 50.0% |
| !! | AGCGGCTCTAAGTTGGTCAT+CGG | - | chr3_3:78212876-78212895 | Msa0475150:three_prime_UTR | 50.0% |
| ! | GTATTTTCCTTCCCCTCACC+TGG | - | chr3_3:78212941-78212960 | Msa0475150:three_prime_UTR | 50.0% |
| TACAGAACCGTACCAGGTGA+GGG | + | chr3_3:78212956-78212975 | None:intergenic | 50.0% | |
| ATACAGAACCGTACCAGGTG+AGG | + | chr3_3:78212957-78212976 | None:intergenic | 50.0% | |
| ! | CCTTGTGCTTGCTTTAGGCT+TGG | + | chr3_3:78213354-78213373 | None:intergenic | 50.0% |
| CCAAGCCTAAAGCAAGCACA+AGG | - | chr3_3:78213351-78213370 | Msa0475150:intron | 50.0% | |
| GCGAGAGAGAAAGGTGGAAA+GGG | + | chr3_3:78213471-78213490 | None:intergenic | 50.0% | |
| AGCGAGAGAGAAAGGTGGAA+AGG | + | chr3_3:78213472-78213491 | None:intergenic | 50.0% | |
| AGTTGAGGAGTAAGAGGGGA+AGG | + | chr3_3:78213536-78213555 | None:intergenic | 50.0% | |
| ! | AGCTCTCCAGTTCTTTTGCC+TGG | - | chr3_3:78213606-78213625 | Msa0475150:intron | 50.0% |
| GAAGGTCCAAAAACTGCTCC+AGG | + | chr3_3:78214016-78214035 | None:intergenic | 50.0% | |
| CTGCCACACGAATGAGTATC+AGG | - | chr3_3:78214144-78214163 | Msa0475150:intron | 50.0% | |
| GTATCCTCTTCAGGACACTC+TGG | - | chr3_3:78214166-78214185 | Msa0475150:intron | 50.0% | |
| ! | AACTCCAGAGTGTCCTGAAG+AGG | + | chr3_3:78214173-78214192 | None:intergenic | 50.0% |
| !! | TCTTCAGGACACTCTGGAGT+TGG | - | chr3_3:78214172-78214191 | Msa0475150:intron | 50.0% |
| GGTGGACAATGGTCAAGCAA+TGG | - | chr3_3:78214434-78214453 | Msa0475150:intron | 50.0% | |
| !! | GGTGGTGGAAACGTTCATTC+TGG | - | chr3_3:78215177-78215196 | Msa0475150:CDS | 50.0% |
| ! | GTTGTTTCAAACCAAGGCGG+AGG | + | chr3_3:78215207-78215226 | None:intergenic | 50.0% |
| ! | ATGCACCCGATGCCTGTTTT+AGG | - | chr3_3:78215240-78215259 | Msa0475150:intron | 50.0% |
| GGTCTCCTAAAACAGGCATC+GGG | + | chr3_3:78215248-78215267 | None:intergenic | 50.0% | |
| CAAGAAGCTCCAACGCGTTT+AGG | + | chr3_3:78215315-78215334 | None:intergenic | 50.0% | |
| CTAAACGCGTTGGAGCTTCT+TGG | - | chr3_3:78215313-78215332 | Msa0475150:intron | 50.0% | |
| !!! | GGCACAAAGCAGACTGGTTT+TGG | + | chr3_3:78215610-78215629 | None:intergenic | 50.0% |
| AAACCAGTCTGCTTTGTGCC+TGG | - | chr3_3:78215610-78215629 | Msa0475150:CDS | 50.0% | |
| ! | CACATTCGAAGCTTTGTGCC+TGG | + | chr3_3:78215639-78215658 | None:intergenic | 50.0% |
| ! | ATGTGAAGTGCTTTGTGCCC+TGG | - | chr3_3:78215654-78215673 | Msa0475150:CDS | 50.0% |
| TTGCAACCCATGCCAAGCTT+GGG | + | chr3_3:78215685-78215704 | None:intergenic | 50.0% | |
| TTTGCAACCCATGCCAAGCT+TGG | + | chr3_3:78215686-78215705 | None:intergenic | 50.0% | |
| ! | GCTTGGCATGGGTTGCAAAA+TGG | - | chr3_3:78215687-78215706 | Msa0475150:CDS | 50.0% |
| ! | CGCCAACATGTCTAGAATGG+CGG | - | chr3_3:78215732-78215751 | Msa0475150:CDS | 50.0% |
| ! | CCCTTTTTCTTTGCAGCGGA+TGG | - | chr3_3:78216080-78216099 | Msa0475150:intron | 50.0% |
| ! | TTGCAGCGGATGGATAATGG+TGG | - | chr3_3:78216090-78216109 | Msa0475150:intron | 50.0% |
| TCTGGTGGCAAACATGTTCG+GGG | - | chr3_3:78216143-78216162 | Msa0475150:intron | 50.0% | |
| TTGACCCACACCCACAACAA+TGG | - | chr3_3:78216290-78216309 | Msa0475150:five_prime_UTR | 50.0% | |
| TGACCCACACCCACAACAAT+GGG | - | chr3_3:78216291-78216310 | Msa0475150:five_prime_UTR | 50.0% | |
| GCTGACCAACTGAACTCGAC+TGG | - | chr3_3:78212822-78212841 | Msa0475150:three_prime_UTR | 55.0% | |
| TACGGCCAGTCGAGTTCAGT+TGG | + | chr3_3:78212830-78212849 | None:intergenic | 55.0% | |
| CATCGGCACCCAGAAATTCC+AGG | - | chr3_3:78212893-78212912 | Msa0475150:three_prime_UTR | 55.0% | |
| TTCCTTCCCCTCACCTGGTA+CGG | - | chr3_3:78212946-78212965 | Msa0475150:three_prime_UTR | 55.0% | |
| ACAGAACCGTACCAGGTGAG+GGG | + | chr3_3:78212955-78212974 | None:intergenic | 55.0% | |
| GATCAAAGGTTGTGTCGCGC+AGG | + | chr3_3:78212999-78213018 | None:intergenic | 55.0% | |
| AGAAATCACGCGGTGCATGG+TGG | + | chr3_3:78213021-78213040 | None:intergenic | 55.0% | |
| TGGAGAAATCACGCGGTGCA+TGG | + | chr3_3:78213024-78213043 | None:intergenic | 55.0% | |
| TGTGAGTGCAGTGGGACAAG+AGG | - | chr3_3:78213945-78213964 | Msa0475150:CDS | 55.0% | |
| !! | GAAAGAGGGGAGGGTGTCTT+AGG | - | chr3_3:78214495-78214514 | Msa0475150:intron | 55.0% |
| AAAGTGGTCAGCGGAGAGAG+CGG | - | chr3_3:78214835-78214854 | Msa0475150:intron | 55.0% | |
| TGAGGAGGCTGTGAGTGTGA+TGG | - | chr3_3:78215062-78215081 | Msa0475150:CDS | 55.0% | |
| GTGCCTGCTGAAAATGGTGG+TGG | - | chr3_3:78215162-78215181 | Msa0475150:CDS | 55.0% | |
| TCGCCCATTGTTGTGGGTGT+GGG | + | chr3_3:78216297-78216316 | None:intergenic | 55.0% | |
| ACACCCACAACAATGGGCGA+GGG | - | chr3_3:78216297-78216316 | Msa0475150:five_prime_UTR | 55.0% | |
| CAACCCTCGCCCATTGTTGT+GGG | + | chr3_3:78216303-78216322 | None:intergenic | 55.0% | |
| ACAACCCTCGCCCATTGTTG+TGG | + | chr3_3:78216304-78216323 | None:intergenic | 55.0% | |
| AACCGTACCAGGTGAGGGGA+AGG | + | chr3_3:78212951-78212970 | None:intergenic | 60.0% | |
| GCGCGATACAGAACCGTACC+AGG | + | chr3_3:78212962-78212981 | None:intergenic | 60.0% | |
| !! | CGCGGTGCATGGTGGATCAA+AGG | + | chr3_3:78213013-78213032 | None:intergenic | 60.0% |
| ACCGATCTGAGAGCGAGAGC+CGG | - | chr3_3:78213324-78213343 | Msa0475150:intron | 60.0% | |
| TCCGGCTCTCGCTCTCAGAT+CGG | + | chr3_3:78213328-78213347 | None:intergenic | 60.0% | |
| TGGTGGCACAGTGGATCAGC+TGG | - | chr3_3:78213785-78213804 | Msa0475150:CDS | 60.0% | |
| ACACTGGAGCACGCTTCCGA+AGG | + | chr3_3:78214235-78214254 | None:intergenic | 60.0% | |
| TGTGTTGGGGGAAAGAGGGG+AGG | - | chr3_3:78214485-78214504 | Msa0475150:intron | 60.0% | |
| GTGTTGGGGGAAAGAGGGGA+GGG | - | chr3_3:78214486-78214505 | Msa0475150:intron | 60.0% | |
| !! | ATTCTGGAGCACCTCCGCCT+TGG | - | chr3_3:78215193-78215212 | Msa0475150:CDS | 60.0% |
| CCAGTCTGCTTTGTGCCTGG+CGG | - | chr3_3:78215613-78215632 | Msa0475150:CDS | 60.0% | |
| GCCAAGCCCAAGCTTGGCAT+GGG | - | chr3_3:78215676-78215695 | Msa0475150:CDS | 60.0% | |
| ACCCATGCCAAGCTTGGGCT+TGG | + | chr3_3:78215680-78215699 | None:intergenic | 60.0% | |
| CTCGCCCATTGTTGTGGGTG+TGG | + | chr3_3:78216298-78216317 | None:intergenic | 60.0% | |
| CACACCCACAACAATGGGCG+AGG | - | chr3_3:78216296-78216315 | Msa0475150:five_prime_UTR | 60.0% | |
| AGCGGAGAGAGCGGTCAGCA+AGG | - | chr3_3:78214844-78214863 | Msa0475150:intron | 65.0% | |
| CCGCCAGGCACAAAGCAGAC+TGG | + | chr3_3:78215616-78215635 | None:intergenic | 65.0% | |
| ! | AAGCTTTGTGCCTGGCCGCC+AGG | + | chr3_3:78215631-78215650 | None:intergenic | 65.0% |
| GCCAAGCTTGGGCTTGGCCA+GGG | + | chr3_3:78215674-78215693 | None:intergenic | 65.0% | |
| TGCCAAGCTTGGGCTTGGCC+AGG | + | chr3_3:78215675-78215694 | None:intergenic | 65.0% | |
| GGCCAAGCCCAAGCTTGGCA+TGG | - | chr3_3:78215675-78215694 | Msa0475150:CDS | 65.0% | |
| CTGCTTTGTGCCTGGCGGCC+AGG | - | chr3_3:78215618-78215637 | Msa0475150:CDS | 70.0% | |
| GCCCTGGCCAAGCCCAAGCT+TGG | - | chr3_3:78215670-78215689 | Msa0475150:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 78212605 | 78216599 | 78212605 | ID=Msa0475150;Name=Msa0475150 |
| chr3_3 | mRNA | 78212605 | 78216599 | 78212605 | ID=Msa0475150-mRNA-1;Parent=Msa0475150;Name=Msa0475150-mRNA-1;_AED=0.13;_eAED=0.13;_QI=260|1|1|1|0.55|0.5|10|480|443 |
| chr3_3 | exon | 78212605 | 78213108 | 78212605 | ID=Msa0475150-mRNA-1:exon:21080;Parent=Msa0475150-mRNA-1 |
| chr3_3 | exon | 78213650 | 78214071 | 78213650 | ID=Msa0475150-mRNA-1:exon:21079;Parent=Msa0475150-mRNA-1 |
| chr3_3 | exon | 78214339 | 78214384 | 78214339 | ID=Msa0475150-mRNA-1:exon:21078;Parent=Msa0475150-mRNA-1 |
| chr3_3 | exon | 78214729 | 78214802 | 78214729 | ID=Msa0475150-mRNA-1:exon:21077;Parent=Msa0475150-mRNA-1 |
| chr3_3 | exon | 78214921 | 78215248 | 78214921 | ID=Msa0475150-mRNA-1:exon:21076;Parent=Msa0475150-mRNA-1 |
| chr3_3 | exon | 78215362 | 78215488 | 78215362 | ID=Msa0475150-mRNA-1:exon:21075;Parent=Msa0475150-mRNA-1 |
| chr3_3 | exon | 78215577 | 78215913 | 78215577 | ID=Msa0475150-mRNA-1:exon:21074;Parent=Msa0475150-mRNA-1 |
| chr3_3 | exon | 78216290 | 78216381 | 78216290 | ID=Msa0475150-mRNA-1:exon:21073;Parent=Msa0475150-mRNA-1 |
| chr3_3 | exon | 78216411 | 78216460 | 78216411 | ID=Msa0475150-mRNA-1:exon:21072;Parent=Msa0475150-mRNA-1 |
| chr3_3 | exon | 78216508 | 78216599 | 78216508 | ID=Msa0475150-mRNA-1:exon:21071;Parent=Msa0475150-mRNA-1 |
| chr3_3 | five_prime_UTR | 78216508 | 78216599 | 78216508 | ID=Msa0475150-mRNA-1:five_prime_utr;Parent=Msa0475150-mRNA-1 |
| chr3_3 | five_prime_UTR | 78216411 | 78216460 | 78216411 | ID=Msa0475150-mRNA-1:five_prime_utr;Parent=Msa0475150-mRNA-1 |
| chr3_3 | five_prime_UTR | 78216290 | 78216381 | 78216290 | ID=Msa0475150-mRNA-1:five_prime_utr;Parent=Msa0475150-mRNA-1 |
| chr3_3 | five_prime_UTR | 78215888 | 78215913 | 78215888 | ID=Msa0475150-mRNA-1:five_prime_utr;Parent=Msa0475150-mRNA-1 |
| chr3_3 | CDS | 78215577 | 78215887 | 78215577 | ID=Msa0475150-mRNA-1:cds;Parent=Msa0475150-mRNA-1 |
| chr3_3 | CDS | 78215362 | 78215488 | 78215362 | ID=Msa0475150-mRNA-1:cds;Parent=Msa0475150-mRNA-1 |
| chr3_3 | CDS | 78214921 | 78215248 | 78214921 | ID=Msa0475150-mRNA-1:cds;Parent=Msa0475150-mRNA-1 |
| chr3_3 | CDS | 78214729 | 78214802 | 78214729 | ID=Msa0475150-mRNA-1:cds;Parent=Msa0475150-mRNA-1 |
| chr3_3 | CDS | 78214339 | 78214384 | 78214339 | ID=Msa0475150-mRNA-1:cds;Parent=Msa0475150-mRNA-1 |
| chr3_3 | CDS | 78213650 | 78214071 | 78213650 | ID=Msa0475150-mRNA-1:cds;Parent=Msa0475150-mRNA-1 |
| chr3_3 | CDS | 78213085 | 78213108 | 78213085 | ID=Msa0475150-mRNA-1:cds;Parent=Msa0475150-mRNA-1 |
| chr3_3 | three_prime_UTR | 78212605 | 78213084 | 78212605 | ID=Msa0475150-mRNA-1:three_prime_utr;Parent=Msa0475150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
