AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0379160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379160 MtrunA17_Chr2g0302301 88.532 436 27 3 1 436 1 413 0.0 785
Msa0379160 MtrunA17_Chr3g0132241 88.303 436 41 3 1 436 1 426 0.0 780
Msa0379160 MtrunA17_Chr2g0302291 87.385 436 42 4 1 436 1 423 0.0 768
Msa0379160 MtrunA17_Chr2g0302271 83.716 436 28 2 1 436 1 393 0.0 739
Msa0379160 MtrunA17_Chr2g0302281 83.486 436 29 2 1 436 1 393 0.0 738
Msa0379160 MtrunA17_Chr2g0302311 83.257 436 30 2 1 436 1 393 0.0 736
Msa0379160 MtrunA17_Chr2g0302211 88.525 305 32 1 1 305 40 341 0.0 556
Msa0379160 MtrunA17_Chr2g0302221 93.793 145 9 0 299 443 1 145 5.48e-97 287
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0379160 AT4G24900.2 46.963 428 203 8 22 441 6 417 3.80e-126 372
Msa0379160 AT4G24900.1 46.868 431 202 9 22 441 6 420 1.78e-124 368

Find 159 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCCAACTGGCTTCCTAATTT+TGG 0.158618 3_1:+80069422 Msa0379160:CDS
TTTCATTGTTCGATTGATTA+TGG 0.190403 3_1:-80068064 None:intergenic
GCATCAATGATTGTGATAAT+AGG 0.203391 3_1:+80070348 Msa0379160:three_prime_UTR
TGTGAATACCCTTGCTTTGC+AGG 0.210617 3_1:+80068271 Msa0379160:CDS
GACCATTGTCCACCATTATA+AGG 0.240119 3_1:-80068444 None:intergenic
ATGCAAGTGGGTGAAATTTC+TGG 0.260115 3_1:+80070143 Msa0379160:three_prime_UTR
TTCTGGTGGCAAACATGTTC+GGG 0.260497 3_1:+80070160 Msa0379160:three_prime_UTR
ACCTATTGAGGGTCATTTAT+AGG 0.275818 3_1:-80070452 None:intergenic
ATAAGTTGAAGCACTTCTTT+TGG 0.278651 3_1:+80067771 Msa0379160:CDS
TTCTCCCTTGTGCTTGCTTT+AGG 0.296235 3_1:-80067370 None:intergenic
CAAGAAGCTCCAACGCGTTT+AGG 0.302629 3_1:-80069332 None:intergenic
CTTTAACATTGGAGACTTGA+TGG 0.305835 3_1:+80070217 Msa0379160:three_prime_UTR
TTGATTCCCGTAATCGCTTC+TGG 0.321659 3_1:+80067569 Msa0379160:CDS
AAGATTTACCAATATCTAAA+AGG 0.330531 3_1:-80068223 None:intergenic
ATTGAGAAAATCAATTCTAA+TGG 0.344078 3_1:-80066711 None:intergenic
CTAAACGCGTTGGAGCTTCT+TGG 0.345827 3_1:+80069333 Msa0379160:CDS
CACTCTGGAGTTGGAAATAC+TGG 0.346137 3_1:+80068200 Msa0379160:CDS
CATCAATGATTGTGATAATA+GGG 0.351900 3_1:+80070349 Msa0379160:three_prime_UTR
CCTTGTGCTTGCTTTAGGCT+TGG 0.352267 3_1:-80067365 None:intergenic
TGCCAGACTCTACCAAAATT+AGG 0.363902 3_1:-80069434 None:intergenic
GAGTATCAGGTATCCTCTTC+AGG 0.367391 3_1:+80068176 Msa0379160:CDS
ATATAAGGTTGTATCTTGAT+TGG 0.378512 3_1:-80069539 None:intergenic
AGGATACGAGTTCACAGAAT+TGG 0.380361 3_1:-80068117 None:intergenic
CTGCCACACGAATGAGTATC+AGG 0.382968 3_1:+80068163 Msa0379160:CDS
ACCATTGTCCACCATTATAA+GGG 0.387426 3_1:-80068443 None:intergenic
AAACACACCAGAAGCGATTA+CGG 0.390716 3_1:-80067576 None:intergenic
CTTCCCTGACTTGTTTGAAT+GGG 0.393201 3_1:-80069294 None:intergenic
TTTCTGGTGGCAAACATGTT+CGG 0.400324 3_1:+80070159 Msa0379160:three_prime_UTR
TCTTCCCTGACTTGTTTGAA+TGG 0.400367 3_1:-80069295 None:intergenic
TCTTTGCAGCGGATGGATAA+TGG 0.403257 3_1:+80070105 Msa0379160:intron
CACCATTATAAGGGAGTTTG+TGG 0.403484 3_1:-80068434 None:intergenic
TAAACGCGTTGGAGCTTCTT+GGG 0.404146 3_1:+80069334 Msa0379160:CDS
GGTGGTGGAAACGTTCATTC+TGG 0.406848 3_1:+80069197 Msa0379160:CDS
ATATAGCAGGTTCTTGATAA+TGG 0.407334 3_1:+80068830 Msa0379160:intron
TGTATCTTGATTGGCATCTC+AGG 0.407746 3_1:-80069530 None:intergenic
TTTGGTAGAGTCTGGCAATC+TGG 0.408366 3_1:+80069440 Msa0379160:CDS
TGAAATGGAGATGGAAAAGA+GGG 0.414739 3_1:+80069373 Msa0379160:CDS
GAAAGGGATTGTTTGTGCTT+AGG 0.422494 3_1:-80067466 None:intergenic
ATTAGCAAGTGAATCGGGTT+TGG 0.424905 3_1:-80066793 None:intergenic
CAGCAGGCACAAAAGAAATA+CGG 0.429488 3_1:-80069169 None:intergenic
GTCTCCCATTCAAACAAGTC+AGG 0.429767 3_1:+80069290 Msa0379160:CDS
AGCCACAAACTCCCTTATAA+TGG 0.430090 3_1:+80068432 Msa0379160:CDS
TTGATACCAGGCAAAAGAAC+TGG 0.431097 3_1:-80067626 None:intergenic
TGGTAAATCTTCTTTACCTT+CGG 0.431171 3_1:+80068235 Msa0379160:CDS
TTGAAATGGAGATGGAAAAG+AGG 0.435852 3_1:+80069372 Msa0379160:CDS
CATTTCAGCATCTTTAACAT+TGG 0.436507 3_1:+80070206 Msa0379160:three_prime_UTR
CTCGCCCATTGTTGTGGGTG+TGG 0.438523 3_1:-80070313 None:intergenic
AACACATTGTCCTGTCTGTT+CGG 0.439783 3_1:-80070570 None:intergenic
TGACCCACACCCACAACAAT+GGG 0.440596 3_1:+80070309 Msa0379160:three_prime_UTR
TGCTTTGTGTCTCAGCTGAA+TGG 0.443110 3_1:+80068406 Msa0379160:intron
TTGAGAAAATCAATTCTAAT+GGG 0.443202 3_1:-80066710 None:intergenic
CTAGAAGGTTATAGAGGTAA+AGG 0.445722 3_1:+80070426 Msa0379160:three_prime_UTR
TGGAGAGCTCATCAATATCT+TGG 0.452093 3_1:-80067606 None:intergenic
AATAACAGTCGGACCTATTG+AGG 0.453038 3_1:-80070464 None:intergenic
GTGCGTTCATGTTGATCCTA+AGG 0.458451 3_1:+80070260 Msa0379160:three_prime_UTR
AAAAGAATCCTTTGATAATG+AGG 0.462400 3_1:+80067314 Msa0379160:exon
TTCCTATTAGCAAGTGAATC+GGG 0.463457 3_1:-80066798 None:intergenic
ATTCTGGAGCACCTCCGCCT+TGG 0.463611 3_1:+80069213 Msa0379160:CDS
GAATCAAGTTGAGGAGTAAG+AGG 0.465438 3_1:-80067553 None:intergenic
CATCGGCACCCAGAAATTCC+AGG 0.467591 3_1:+80066910 Msa0379160:five_prime_UTR
GTTCCTATTAGCAAGTGAAT+CGG 0.467606 3_1:-80066799 None:intergenic
GACCAACTAGTGTGACTAGA+AGG 0.470923 3_1:+80070411 Msa0379160:three_prime_UTR
AGAAAAGAGAAAGATTGAAA+TGG 0.474332 3_1:+80069358 Msa0379160:CDS
ATCCAGAAAAGAATTTGAAA+AGG 0.475633 3_1:+80069475 Msa0379160:CDS
GAGACAAGGTCTCCTAAAAC+AGG 0.485901 3_1:-80069272 None:intergenic
TTGCAAAATGAGGAAAGTCC+TGG 0.489221 3_1:+80068014 Msa0379160:CDS
AAAGGCAAAACAACATTTGA+AGG 0.492186 3_1:-80068137 None:intergenic
GCCTATAAATGACCCTCAAT+AGG 0.492307 3_1:+80070451 Msa0379160:three_prime_UTR
AGTTGAGGAGTAAGAGGGGA+AGG 0.493950 3_1:-80067547 None:intergenic
AAGCGAGTTTGAGTTCTGTA+AGG 0.495349 3_1:+80067399 Msa0379160:CDS
TCTTCAGGACACTCTGGAGT+TGG 0.495973 3_1:+80068191 Msa0379160:CDS
TCGCCCATTGTTGTGGGTGT+GGG 0.496105 3_1:-80070312 None:intergenic
TCACATGTTGTACACTTGCT+AGG 0.496306 3_1:-80067748 None:intergenic
ACCGATCTGAGAGCAAGAGC+CGG 0.497675 3_1:+80067338 Msa0379160:CDS
AACACACCAGAAGCGATTAC+GGG 0.499104 3_1:-80067575 None:intergenic
GGAAAGAATGTGATGCCAAC+TGG 0.499236 3_1:+80069408 Msa0379160:CDS
AAAACGCAGCGGCTCTAAGT+TGG 0.503334 3_1:+80066886 Msa0379160:five_prime_UTR
TTGCTTTAGGCTTGGAACTC+CGG 0.505550 3_1:-80067357 None:intergenic
ACAACCCTCGCCCATTGTTG+TGG 0.506483 3_1:-80070319 None:intergenic
AGAAGCTTCATTGCAAAATG+AGG 0.508478 3_1:+80068004 Msa0379160:CDS
CAACCCTCGCCCATTGTTGT+GGG 0.511402 3_1:-80070318 None:intergenic
TGCGTTCATGTTGATCCTAA+GGG 0.511458 3_1:+80070261 Msa0379160:three_prime_UTR
GAGAAAGATTGAAATGGAGA+TGG 0.511805 3_1:+80069364 Msa0379160:CDS
AGGTCTCCTAAAACAGGCAT+CGG 0.515223 3_1:-80069266 None:intergenic
GCGAGAGAGAAAGGTGGAAA+GGG 0.518200 3_1:-80067482 None:intergenic
CCAAGCCTAAAGCAAGCACA+AGG 0.527399 3_1:+80067365 Msa0379160:CDS
TGCAAAATCCTGCAAAGCAA+GGG 0.528151 3_1:-80068279 None:intergenic
CGCGAGAGAGAAAGGTGGAA+AGG 0.530464 3_1:-80067483 None:intergenic
TACGGCCAGTCGAGTTCAGT+TGG 0.535216 3_1:-80066844 None:intergenic
ACCTTATATTAGCAAAAGAA+TGG 0.535376 3_1:+80069553 Msa0379160:CDS
ATCAAGTTGAGGAGTAAGAG+GGG 0.536655 3_1:-80067551 None:intergenic
TTGACCCACACCCACAACAA+TGG 0.537577 3_1:+80070308 Msa0379160:three_prime_UTR
TGATTATGGATATCACTTGA+AGG 0.537807 3_1:-80068050 None:intergenic
TGTGCTTAGGAAAATATTTG+TGG 0.539896 3_1:-80067453 None:intergenic
AAAGAATCCTTTGATAATGA+GGG 0.541061 3_1:+80067315 Msa0379160:exon
AATATTTGTGGCGAAGACCT+TGG 0.541717 3_1:-80067441 None:intergenic
CTGCAAAATCCTGCAAAGCA+AGG 0.542365 3_1:-80068280 None:intergenic
TCCGGCTCTTGCTCTCAGAT+CGG 0.545366 3_1:-80067339 None:intergenic
TGGTGGCACAGTGGATCAGC+TGG 0.546120 3_1:+80067799 Msa0379160:CDS
AGCAGGCACAAAAGAAATAC+GGG 0.546736 3_1:-80069168 None:intergenic
GTGCTATAAAACTACCATCA+TGG 0.547893 3_1:-80070496 None:intergenic
GTATCCTCTTCAGGACACTC+TGG 0.557679 3_1:+80068185 Msa0379160:CDS
CCCTCAGTTGTTTCAAACCA+AGG 0.557837 3_1:-80069230 None:intergenic
GCTGACCAACTGAACTCGAC+TGG 0.560747 3_1:+80066839 Msa0379160:intron
GTGTGACTAGAAGGTTATAG+AGG 0.561752 3_1:+80070420 Msa0379160:three_prime_UTR
AACCTTCTAGTCACACTAGT+TGG 0.562759 3_1:-80070413 None:intergenic
CACACCCACAACAATGGGCG+AGG 0.567124 3_1:+80070314 Msa0379160:three_prime_UTR
GGTTCTTGATAATGGTAAAG+TGG 0.568202 3_1:+80068838 Msa0379160:intron
TATAAAACTACCATCATGGC+AGG 0.569398 3_1:-80070492 None:intergenic
GGTCTCCTAAAACAGGCATC+GGG 0.570549 3_1:-80069265 None:intergenic
GTTGTTTCAAACCAAGGCGG+AGG 0.570570 3_1:-80069224 None:intergenic
TCATTCGTGTGGCAGTGTAA+AGG 0.570708 3_1:-80068155 None:intergenic
ATAACAGTCGGACCTATTGA+GGG 0.570897 3_1:-80070463 None:intergenic
CAAAGCAAGGGTATTCACAC+TGG 0.571589 3_1:-80068267 None:intergenic
AACTCCAGAGTGTCCTGAAG+AGG 0.572593 3_1:-80068189 None:intergenic
GTGCCTGCTGAAAATGGTGG+TGG 0.572846 3_1:+80069182 Msa0379160:CDS
TTATTTGAATCCTGCCATGA+TGG 0.576942 3_1:+80070482 Msa0379160:three_prime_UTR
TTCTGATAATGACGTTGCAA+AGG 0.582910 3_1:+80067835 Msa0379160:CDS
AGCGGAGAGAGCGGTCAGCA+AGG 0.586780 3_1:+80068863 Msa0379160:CDS
AGCGGCTCTAAGTTGGTCAT+CGG 0.589558 3_1:+80066893 Msa0379160:five_prime_UTR
GATCGGTCCCTCATTATCAA+AGG 0.595663 3_1:-80067322 None:intergenic
AAAAGAGGGGAGAGATTGTG+AGG 0.596176 3_1:+80069387 Msa0379160:CDS
AAGTTGAATCCTAAACGCGT+TGG 0.598248 3_1:+80069323 Msa0379160:CDS
ATGTAACATGAAATATACAA+TGG 0.598612 3_1:-80070375 None:intergenic
ACCAAAATTAGGAAGCCAGT+TGG 0.599512 3_1:-80069423 None:intergenic
GGTGGACAATGGTCAAGCGA+TGG 0.602318 3_1:+80068453 Msa0379160:CDS
AATCAAGTTGAGGAGTAAGA+GGG 0.603161 3_1:-80067552 None:intergenic
GAATCGTCAAAGTTGAAGAA+CGG 0.608982 3_1:-80066659 None:intergenic
TCTCCCATTCAAACAAGTCA+GGG 0.611755 3_1:+80069291 Msa0379160:CDS
ACTTGTTTGAATGGGAGACA+AGG 0.612462 3_1:-80069286 None:intergenic
CCTTGGTTTGAAACAACTGA+GGG 0.618549 3_1:+80069230 Msa0379160:CDS
TTTGTGCCTGCTGAAAATGG+TGG 0.618734 3_1:+80069179 Msa0379160:CDS
GGCAGGATTCAAATAACAGT+CGG 0.622314 3_1:-80070475 None:intergenic
ACACTGGAGCACGCTTCCGA+AGG 0.624754 3_1:-80068251 None:intergenic
CGATTACGGGAATCAAGTTG+AGG 0.631280 3_1:-80067562 None:intergenic
TCCCTTATAATGGTGGACAA+TGG 0.631924 3_1:+80068442 Msa0379160:CDS
CTAGTCACACTAGTTGGTCA+CGG 0.632777 3_1:-80070407 None:intergenic
GCCTTGGTTTGAAACAACTG+AGG 0.637234 3_1:+80069229 Msa0379160:CDS
TGGATACTCATGTAATAAAG+CGG 0.645799 3_1:+80068473 Msa0379160:CDS
TTTGAGGAAGAAGCGAACAT+CGG 0.647723 3_1:-80067521 None:intergenic
GCGATAAATGACTATGCAAG+TGG 0.649105 3_1:+80070130 Msa0379160:exon
GCGTTCATGTTGATCCTAAG+GGG 0.650976 3_1:+80070262 Msa0379160:three_prime_UTR
ACACCCACAACAATGGGCGA+GGG 0.652288 3_1:+80070315 Msa0379160:three_prime_UTR
TCTGGTGGCAAACATGTTCG+GGG 0.652788 3_1:+80070161 Msa0379160:three_prime_UTR
CACAAACTCCCTTATAATGG+TGG 0.655091 3_1:+80068435 Msa0379160:CDS
TGTGAGTGCAGTGGGACAAG+AGG 0.664647 3_1:+80067964 Msa0379160:intron
AAAGTGGTCAGCGGAGAGAG+CGG 0.667269 3_1:+80068854 Msa0379160:CDS
TTTGACGCGAGAGAGAAAGG+TGG 0.670190 3_1:-80067488 None:intergenic
ATACCTGATACTCATTCGTG+TGG 0.672100 3_1:-80068166 None:intergenic
TTGCAGCGGATGGATAATGG+TGG 0.678925 3_1:+80070108 Msa0379160:intron
TGCAAAATAAATCACGACCA+AGG 0.680383 3_1:+80067424 Msa0379160:CDS
TTGGAAATATGGTGGCACAG+TGG 0.693464 3_1:+80067790 Msa0379160:CDS
GATAATGGTAAAGTGGTCAG+CGG 0.694408 3_1:+80068845 Msa0379160:CDS
CGATAAATGACTATGCAAGT+GGG 0.694796 3_1:+80070131 Msa0379160:exon
AAGCTGATCGCAAAACGCAG+CGG 0.702485 3_1:+80066875 Msa0379160:five_prime_UTR
GAAATGGAGATGGAAAAGAG+GGG 0.718016 3_1:+80069374 Msa0379160:CDS
CAAGTGGGTGAAATTTCTGG+TGG 0.728035 3_1:+80070146 Msa0379160:three_prime_UTR
CAAGCCTAAAGCAAGCACAA+GGG 0.732388 3_1:+80067366 Msa0379160:CDS
TCAGTTGTTTCAAACCAAGG+CGG 0.741048 3_1:-80069227 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTCAACAAATAATTTT+TGG - chr3_1:80066640-80066659 None:intergenic 15.0%
!!! ACAAATAAGTTTTTGAATAA+GGG - chr3_1:80067094-80067113 None:intergenic 15.0%
!!! AACAAATAAGTTTTTGAATA+AGG - chr3_1:80067095-80067114 None:intergenic 15.0%
!!! AGAAAATTTTAGATAACTTA+AGG - chr3_1:80068645-80068664 None:intergenic 15.0%
!! TTCTTATAATTCTATAAAGT+TGG + chr3_1:80068921-80068940 Msa0379160:intron 15.0%
!! TCTTATAATTCTATAAAGTT+GGG + chr3_1:80068922-80068941 Msa0379160:intron 15.0%
!!! AGATAAAACATTTTTTGAAA+GGG + chr3_1:80069789-80069808 Msa0379160:intron 15.0%
!!! AACAAATAATATTTTGATAG+CGG + chr3_1:80069870-80069889 Msa0379160:intron 15.0%
!! TGAATAATTAATGATTTCTT+TGG + chr3_1:80069995-80070014 Msa0379160:intron 15.0%
!! TTGAGAAAATCAATTCTAAT+GGG - chr3_1:80066713-80066732 None:intergenic 20.0%
!! ATTGAGAAAATCAATTCTAA+TGG - chr3_1:80066714-80066733 None:intergenic 20.0%
!!! TAATAGAATACCAACTTTTT+TGG - chr3_1:80066755-80066774 None:intergenic 20.0%
!! ATAAAGTCTCAAATTTGAAA+AGG - chr3_1:80067185-80067204 None:intergenic 20.0%
!!! ATTATCAAAGGATTCTTTTT+CGG - chr3_1:80067313-80067332 None:intergenic 20.0%
!! AAAAACAGACATAAGATATA+TGG - chr3_1:80067863-80067882 None:intergenic 20.0%
!!! ATATCTTATGTCTGTTTTTT+AGG + chr3_1:80067864-80067883 Msa0379160:intron 20.0%
!!! TATCTTATGTCTGTTTTTTA+GGG + chr3_1:80067865-80067884 Msa0379160:intron 20.0%
!! AAGATTTACCAATATCTAAA+AGG - chr3_1:80068226-80068245 None:intergenic 20.0%
!! TGTAATTTAAACACTGATAA+AGG + chr3_1:80068790-80068809 Msa0379160:intron 20.0%
!! CTTATAATTCTATAAAGTTG+GGG + chr3_1:80068923-80068942 Msa0379160:intron 20.0%
!!! CAGATAAAACATTTTTTGAA+AGG + chr3_1:80069788-80069807 Msa0379160:intron 20.0%
!!! ACAAATAATATTTTGATAGC+GGG + chr3_1:80069871-80069890 Msa0379160:intron 20.0%
!! GTTCAAATATTTACAGATTA+AGG - chr3_1:80070073-80070092 None:intergenic 20.0%
!! ATGTAACATGAAATATACAA+TGG - chr3_1:80070378-80070397 None:intergenic 20.0%
!!! TGTTTTATTGCTTTTCTGTA+AGG + chr3_1:80066593-80066612 Msa0379160:five_prime_UTR 25.0%
!!! AGAATTGATTTTCTCAATTC+TGG + chr3_1:80066716-80066735 Msa0379160:intron 25.0%
!! TAATTTTCAGCCAAAAAAGT+TGG + chr3_1:80066742-80066761 Msa0379160:intron 25.0%
! AAAAAAAACCTGGAATTTCT+GGG - chr3_1:80066921-80066940 None:intergenic 25.0%
! AGGAAAATACAGAGTAAAAA+GGG - chr3_1:80066948-80066967 None:intergenic 25.0%
! AAGGAAAATACAGAGTAAAA+AGG - chr3_1:80066949-80066968 None:intergenic 25.0%
!!! ATGTTTAAGTTTTCTTTCTG+TGG + chr3_1:80067122-80067141 Msa0379160:intron 25.0%
! TACTTTACTGTTCTAATAAG+TGG + chr3_1:80067214-80067233 Msa0379160:intron 25.0%
!!! AAAAGAATCCTTTGATAATG+AGG + chr3_1:80067314-80067333 Msa0379160:exon 25.0%
!!! AAAGAATCCTTTGATAATGA+GGG + chr3_1:80067315-80067334 Msa0379160:exon 25.0%
! GAAAACAAAAAATTGATACC+AGG - chr3_1:80067641-80067660 None:intergenic 25.0%
!!! ATCTTATGTCTGTTTTTTAG+GGG + chr3_1:80067866-80067885 Msa0379160:intron 25.0%
!!! CAATGAAGCTTCTTTTTTAA+GGG - chr3_1:80067997-80068016 None:intergenic 25.0%
! TTTCATTGTTCGATTGATTA+TGG - chr3_1:80068067-80068086 None:intergenic 25.0%
!! TCTTCAAATATTTTGCACAT+AGG - chr3_1:80069000-80069019 None:intergenic 25.0%
! AGAAAAGAGAAAGATTGAAA+TGG + chr3_1:80069358-80069377 Msa0379160:CDS 25.0%
! ATCCAGAAAAGAATTTGAAA+AGG + chr3_1:80069475-80069494 Msa0379160:CDS 25.0%
! ATATAAGGTTGTATCTTGAT+TGG - chr3_1:80069542-80069561 None:intergenic 25.0%
! ACCTTATATTAGCAAAAGAA+TGG + chr3_1:80069553-80069572 Msa0379160:CDS 25.0%
!! ACCATTCTTTTGCTAATATA+AGG - chr3_1:80069557-80069576 None:intergenic 25.0%
! CATCAATGATTGTGATAATA+GGG + chr3_1:80070349-80070368 Msa0379160:three_prime_UTR 25.0%
!!! CGATCAGCTTTTGATTTTTA+CGG - chr3_1:80066865-80066884 None:intergenic 30.0%
GAAAAAAAACCTGGAATTTC+TGG - chr3_1:80066922-80066941 None:intergenic 30.0%
GGAAAATACAGAGTAAAAAG+GGG - chr3_1:80066947-80066966 None:intergenic 30.0%
! TAAGTTTTCTTTCTGTGGAA+TGG + chr3_1:80067127-80067146 Msa0379160:intron 30.0%
! AAGTTTTCTTTCTGTGGAAT+GGG + chr3_1:80067128-80067147 Msa0379160:intron 30.0%
AGTCTCAAATTTGAAAAGGA+TGG - chr3_1:80067181-80067200 None:intergenic 30.0%
TACTGTTCTAATAAGTGGTA+AGG + chr3_1:80067219-80067238 Msa0379160:intron 30.0%
TACGAACAAAAACAACATAG+TGG - chr3_1:80067284-80067303 None:intergenic 30.0%
!!! ACTATGTTGTTTTTGTTCGT+AGG + chr3_1:80067283-80067302 Msa0379160:intron 30.0%
!!! CTATGTTGTTTTTGTTCGTA+GGG + chr3_1:80067284-80067303 Msa0379160:intron 30.0%
TGTGCTTAGGAAAATATTTG+TGG - chr3_1:80067456-80067475 None:intergenic 30.0%
CAATTTATGAACTATTGTCC+AGG + chr3_1:80067660-80067679 Msa0379160:intron 30.0%
CAAATTAGCTAAAGAAAACC+TGG - chr3_1:80067681-80067700 None:intergenic 30.0%
!! ATAAGTTGAAGCACTTCTTT+TGG + chr3_1:80067771-80067790 Msa0379160:CDS 30.0%
!! AAGCACTTCTTTTGGAAATA+TGG + chr3_1:80067779-80067798 Msa0379160:CDS 30.0%
!!! GCAATGAAGCTTCTTTTTTA+AGG - chr3_1:80067998-80068017 None:intergenic 30.0%
TGATTATGGATATCACTTGA+AGG - chr3_1:80068053-80068072 None:intergenic 30.0%
AAAGGCAAAACAACATTTGA+AGG - chr3_1:80068140-80068159 None:intergenic 30.0%
!!! AATACTGGCCTTTTAGATAT+TGG + chr3_1:80068215-80068234 Msa0379160:CDS 30.0%
TGGTAAATCTTCTTTACCTT+CGG + chr3_1:80068235-80068254 Msa0379160:CDS 30.0%
AATGACATTTCCAATAGACA+GGG - chr3_1:80068315-80068334 None:intergenic 30.0%
AAATGACATTTCCAATAGAC+AGG - chr3_1:80068316-80068335 None:intergenic 30.0%
TTACAATTATCGTTCACTTG+TGG + chr3_1:80068344-80068363 Msa0379160:intron 30.0%
TACAATTATCGTTCACTTGT+GGG + chr3_1:80068345-80068364 Msa0379160:intron 30.0%
TGGATACTCATGTAATAAAG+CGG + chr3_1:80068473-80068492 Msa0379160:CDS 30.0%
! TTTTCTTGTCTTCATGATCA+AGG + chr3_1:80068659-80068678 Msa0379160:intron 30.0%
GCATTTCTTATGAATATAGC+AGG + chr3_1:80068817-80068836 Msa0379160:intron 30.0%
ATATAGCAGGTTCTTGATAA+TGG + chr3_1:80068830-80068849 Msa0379160:intron 30.0%
GACTTGAATGCAGAAAAAAA+AGG + chr3_1:80069018-80069037 Msa0379160:intron 30.0%
! CAGAAAAAAAAGGTTTTCTG+TGG + chr3_1:80069028-80069047 Msa0379160:intron 30.0%
CTCTTTGATAGATAACATTG+AGG + chr3_1:80069063-80069082 Msa0379160:intron 30.0%
TTTGATAGATAACATTGAGG+AGG + chr3_1:80069066-80069085 Msa0379160:intron 30.0%
! CTCCTTTTCAAATTCTTTTC+TGG - chr3_1:80069480-80069499 None:intergenic 30.0%
!!! CATTTTTTGAAAGGGATTTC+TGG + chr3_1:80069797-80069816 Msa0379160:intron 30.0%
CATTTCAGCATCTTTAACAT+TGG + chr3_1:80070206-80070225 Msa0379160:three_prime_UTR 30.0%
GCATCAATGATTGTGATAAT+AGG + chr3_1:80070348-80070367 Msa0379160:three_prime_UTR 30.0%
!! TGTAAGGAGATATTTTTGCG+TGG + chr3_1:80066609-80066628 Msa0379160:five_prime_UTR 35.0%
GAATCGTCAAAGTTGAAGAA+CGG - chr3_1:80066662-80066681 None:intergenic 35.0%
TTCCTATTAGCAAGTGAATC+GGG - chr3_1:80066801-80066820 None:intergenic 35.0%
GTTCCTATTAGCAAGTGAAT+CGG - chr3_1:80066802-80066821 None:intergenic 35.0%
AAAGGGGAAGAAAAAAAACC+TGG - chr3_1:80066931-80066950 None:intergenic 35.0%
TTTCTGTGGAATGGGAATAT+GGG + chr3_1:80067136-80067155 Msa0379160:intron 35.0%
TGCAAAATAAATCACGACCA+AGG + chr3_1:80067424-80067443 Msa0379160:CDS 35.0%
!! AATCAAGTTGAGGAGTAAGA+GGG - chr3_1:80067555-80067574 None:intergenic 35.0%
!! CACTTCTTTTGGAAATATGG+TGG + chr3_1:80067782-80067801 Msa0379160:CDS 35.0%
! TTCTGATAATGACGTTGCAA+AGG + chr3_1:80067835-80067854 Msa0379160:CDS 35.0%
TAATTTCTTTGTGAGTGCAG+TGG + chr3_1:80067955-80067974 Msa0379160:intron 35.0%
AATTTCTTTGTGAGTGCAGT+GGG + chr3_1:80067956-80067975 Msa0379160:intron 35.0%
AGAAGCTTCATTGCAAAATG+AGG + chr3_1:80068004-80068023 Msa0379160:CDS 35.0%
ACCATTGTCCACCATTATAA+GGG - chr3_1:80068446-80068465 None:intergenic 35.0%
AAAGCGGTAAGTTTATGTGT+TGG + chr3_1:80068489-80068508 Msa0379160:intron 35.0%
AAGCGGTAAGTTTATGTGTT+GGG + chr3_1:80068490-80068509 Msa0379160:intron 35.0%
TTCAGACTTTCAGCAATTGT+TGG + chr3_1:80068573-80068592 Msa0379160:intron 35.0%
!! TTGTTGGTTGGTGATTTCAT+TGG + chr3_1:80068589-80068608 Msa0379160:intron 35.0%
!! GGTTCTTGATAATGGTAAAG+TGG + chr3_1:80068838-80068857 Msa0379160:intron 35.0%
! ACTAATGACTCTGCATTTTC+AGG + chr3_1:80069131-80069150 Msa0379160:intron 35.0%
GAGAAAGATTGAAATGGAGA+TGG + chr3_1:80069364-80069383 Msa0379160:CDS 35.0%
TTGAAATGGAGATGGAAAAG+AGG + chr3_1:80069372-80069391 Msa0379160:CDS 35.0%
TGAAATGGAGATGGAAAAGA+GGG + chr3_1:80069373-80069392 Msa0379160:CDS 35.0%
!! TTCCTAATTTTGGTAGAGTC+TGG + chr3_1:80069432-80069451 Msa0379160:CDS 35.0%
!!! TATTTTGATAGCGGGTTACT+AGG + chr3_1:80069879-80069898 Msa0379160:intron 35.0%
!!! TGTTCCTTTTTTCTTTGCAG+CGG + chr3_1:80070094-80070113 Msa0379160:intron 35.0%
CGATAAATGACTATGCAAGT+GGG + chr3_1:80070131-80070150 Msa0379160:exon 35.0%
CTTTAACATTGGAGACTTGA+TGG + chr3_1:80070217-80070236 Msa0379160:three_prime_UTR 35.0%
CTAGAAGGTTATAGAGGTAA+AGG + chr3_1:80070426-80070445 Msa0379160:three_prime_UTR 35.0%
ACCTATTGAGGGTCATTTAT+AGG - chr3_1:80070455-80070474 None:intergenic 35.0%
TTATTTGAATCCTGCCATGA+TGG + chr3_1:80070482-80070501 Msa0379160:three_prime_UTR 35.0%
TATAAAACTACCATCATGGC+AGG - chr3_1:80070495-80070514 None:intergenic 35.0%
GTGCTATAAAACTACCATCA+TGG - chr3_1:80070499-80070518 None:intergenic 35.0%
!!! TGGTAGTTTTATAGCACAAG+AGG + chr3_1:80070502-80070521 Msa0379160:three_prime_UTR 35.0%
ATTAGCAAGTGAATCGGGTT+TGG - chr3_1:80066796-80066815 None:intergenic 40.0%
! AACCCGATTCACTTGCTAAT+AGG + chr3_1:80066796-80066815 Msa0379160:intron 40.0%
ACGTGAACAAATGCAGCAAT+TGG - chr3_1:80067061-80067080 None:intergenic 40.0%
CTTTCTGTGGAATGGGAATA+TGG + chr3_1:80067135-80067154 Msa0379160:intron 40.0%
TTCTGTGGAATGGGAATATG+GGG + chr3_1:80067137-80067156 Msa0379160:intron 40.0%
! AAGCGAGTTTGAGTTCTGTA+AGG + chr3_1:80067399-80067418 Msa0379160:CDS 40.0%
AATATTTGTGGCGAAGACCT+TGG - chr3_1:80067444-80067463 None:intergenic 40.0%
GAAAGGGATTGTTTGTGCTT+AGG - chr3_1:80067469-80067488 None:intergenic 40.0%
TTTGAGGAAGAAGCGAACAT+CGG - chr3_1:80067524-80067543 None:intergenic 40.0%
!! ATCAAGTTGAGGAGTAAGAG+GGG - chr3_1:80067554-80067573 None:intergenic 40.0%
!! GAATCAAGTTGAGGAGTAAG+AGG - chr3_1:80067556-80067575 None:intergenic 40.0%
AAACACACCAGAAGCGATTA+CGG - chr3_1:80067579-80067598 None:intergenic 40.0%
TGGAGAGCTCATCAATATCT+TGG - chr3_1:80067609-80067628 None:intergenic 40.0%
TTGATACCAGGCAAAAGAAC+TGG - chr3_1:80067629-80067648 None:intergenic 40.0%
TGAATGTTCTCTTGTTCTCG+AGG + chr3_1:80067704-80067723 Msa0379160:intron 40.0%
TCACATGTTGTACACTTGCT+AGG - chr3_1:80067751-80067770 None:intergenic 40.0%
TTGCAAAATGAGGAAAGTCC+TGG + chr3_1:80068014-80068033 Msa0379160:CDS 40.0%
AGGATACGAGTTCACAGAAT+TGG - chr3_1:80068120-80068139 None:intergenic 40.0%
ATACCTGATACTCATTCGTG+TGG - chr3_1:80068169-80068188 None:intergenic 40.0%
TGCAAAATCCTGCAAAGCAA+GGG - chr3_1:80068282-80068301 None:intergenic 40.0%
AGACACAAAGCATAACCACA+CGG - chr3_1:80068398-80068417 None:intergenic 40.0%
AGCCACAAACTCCCTTATAA+TGG + chr3_1:80068432-80068451 Msa0379160:CDS 40.0%
CACCATTATAAGGGAGTTTG+TGG - chr3_1:80068437-80068456 None:intergenic 40.0%
CACAAACTCCCTTATAATGG+TGG + chr3_1:80068435-80068454 Msa0379160:CDS 40.0%
!! TCCCTTATAATGGTGGACAA+TGG + chr3_1:80068442-80068461 Msa0379160:CDS 40.0%
GACCATTGTCCACCATTATA+AGG - chr3_1:80068447-80068466 None:intergenic 40.0%
AGCGGTAAGTTTATGTGTTG+GGG + chr3_1:80068491-80068510 Msa0379160:intron 40.0%
TTTATGTGTTGGGGGAAAGA+GGG + chr3_1:80068500-80068519 Msa0379160:intron 40.0%
GACTTTCAGCAATTGTTGGT+TGG + chr3_1:80068577-80068596 Msa0379160:intron 40.0%
! GATAATGGTAAAGTGGTCAG+CGG + chr3_1:80068845-80068864 Msa0379160:CDS 40.0%
! GTTTTCTGTGGCATTATGAC+TGG + chr3_1:80069040-80069059 Msa0379160:intron 40.0%
AGCAGGCACAAAAGAAATAC+GGG - chr3_1:80069171-80069190 None:intergenic 40.0%
CAGCAGGCACAAAAGAAATA+CGG - chr3_1:80069172-80069191 None:intergenic 40.0%
! TCTTTTGTGCCTGCTGAAAA+TGG + chr3_1:80069176-80069195 Msa0379160:CDS 40.0%
! TCAGTTGTTTCAAACCAAGG+CGG - chr3_1:80069230-80069249 None:intergenic 40.0%
! CCTTGGTTTGAAACAACTGA+GGG + chr3_1:80069230-80069249 Msa0379160:CDS 40.0%
ACTTGTTTGAATGGGAGACA+AGG - chr3_1:80069289-80069308 None:intergenic 40.0%
TCTCCCATTCAAACAAGTCA+GGG + chr3_1:80069291-80069310 Msa0379160:CDS 40.0%
!! CTTCCCTGACTTGTTTGAAT+GGG - chr3_1:80069297-80069316 None:intergenic 40.0%
!! TCTTCCCTGACTTGTTTGAA+TGG - chr3_1:80069298-80069317 None:intergenic 40.0%
AAGTTGAATCCTAAACGCGT+TGG + chr3_1:80069323-80069342 Msa0379160:CDS 40.0%
GAAATGGAGATGGAAAAGAG+GGG + chr3_1:80069374-80069393 Msa0379160:CDS 40.0%
ACCAAAATTAGGAAGCCAGT+TGG - chr3_1:80069426-80069445 None:intergenic 40.0%
TGCCAGACTCTACCAAAATT+AGG - chr3_1:80069437-80069456 None:intergenic 40.0%
TGTATCTTGATTGGCATCTC+AGG - chr3_1:80069533-80069552 None:intergenic 40.0%
CAACTCTGTAAGTTGTCTCA+TGG - chr3_1:80069832-80069851 None:intergenic 40.0%
CATGAGACAACTTACAGAGT+TGG + chr3_1:80069830-80069849 Msa0379160:intron 40.0%
GCGATAAATGACTATGCAAG+TGG + chr3_1:80070130-80070149 Msa0379160:exon 40.0%
ATGCAAGTGGGTGAAATTTC+TGG + chr3_1:80070143-80070162 Msa0379160:three_prime_UTR 40.0%
! TTTCTGGTGGCAAACATGTT+CGG + chr3_1:80070159-80070178 Msa0379160:three_prime_UTR 40.0%
TGCGTTCATGTTGATCCTAA+GGG + chr3_1:80070261-80070280 Msa0379160:three_prime_UTR 40.0%
AACCTTCTAGTCACACTAGT+TGG - chr3_1:80070416-80070435 None:intergenic 40.0%
GTGTGACTAGAAGGTTATAG+AGG + chr3_1:80070420-80070439 Msa0379160:three_prime_UTR 40.0%
GCCTATAAATGACCCTCAAT+AGG + chr3_1:80070451-80070470 Msa0379160:three_prime_UTR 40.0%
ATAACAGTCGGACCTATTGA+GGG - chr3_1:80070466-80070485 None:intergenic 40.0%
AATAACAGTCGGACCTATTG+AGG - chr3_1:80070467-80070486 None:intergenic 40.0%
GGCAGGATTCAAATAACAGT+CGG - chr3_1:80070478-80070497 None:intergenic 40.0%
!! TTCATTTTTGCCGAACAGAC+AGG + chr3_1:80070560-80070579 Msa0379160:three_prime_UTR 40.0%
AACACATTGTCCTGTCTGTT+CGG - chr3_1:80070573-80070592 None:intergenic 40.0%
CAGCAATTGGAGAAATCACG+CGG - chr3_1:80067048-80067067 None:intergenic 45.0%
GATCGGTCCCTCATTATCAA+AGG - chr3_1:80067325-80067344 None:intergenic 45.0%
! TTGCTTTAGGCTTGGAACTC+CGG - chr3_1:80067360-80067379 None:intergenic 45.0%
CAAGCCTAAAGCAAGCACAA+GGG + chr3_1:80067366-80067385 Msa0379160:CDS 45.0%
TTCTCCCTTGTGCTTGCTTT+AGG - chr3_1:80067373-80067392 None:intergenic 45.0%
! GTTTTTGACGCGAGAGAGAA+AGG - chr3_1:80067494-80067513 None:intergenic 45.0%
!!! TAAGAGGGGAAGGTGTTTTG+AGG - chr3_1:80067540-80067559 None:intergenic 45.0%
! CGATTACGGGAATCAAGTTG+AGG - chr3_1:80067565-80067584 None:intergenic 45.0%
TTGATTCCCGTAATCGCTTC+TGG + chr3_1:80067569-80067588 Msa0379160:CDS 45.0%
AACACACCAGAAGCGATTAC+GGG - chr3_1:80067578-80067597 None:intergenic 45.0%
TTGGAAATATGGTGGCACAG+TGG + chr3_1:80067790-80067809 Msa0379160:CDS 45.0%
! GAAAGTCCTGGAGCAGTTTT+TGG + chr3_1:80068026-80068045 Msa0379160:CDS 45.0%
TCATTCGTGTGGCAGTGTAA+AGG - chr3_1:80068158-80068177 None:intergenic 45.0%
GAGTATCAGGTATCCTCTTC+AGG + chr3_1:80068176-80068195 Msa0379160:CDS 45.0%
!! CACTCTGGAGTTGGAAATAC+TGG + chr3_1:80068200-80068219 Msa0379160:CDS 45.0%
!! CAAAGCAAGGGTATTCACAC+TGG - chr3_1:80068270-80068289 None:intergenic 45.0%
TGTGAATACCCTTGCTTTGC+AGG + chr3_1:80068271-80068290 Msa0379160:CDS 45.0%
CTGCAAAATCCTGCAAAGCA+AGG - chr3_1:80068283-80068302 None:intergenic 45.0%
! CTTGCTTTGCAGGATTTTGC+AGG + chr3_1:80068281-80068300 Msa0379160:CDS 45.0%
GGTATGCTTACCCTGTCTAT+TGG + chr3_1:80068302-80068321 Msa0379160:intron 45.0%
GTTGAGACTTATCTTCCGTG+TGG + chr3_1:80068380-80068399 Msa0379160:intron 45.0%
TGCTTTGTGTCTCAGCTGAA+TGG + chr3_1:80068406-80068425 Msa0379160:intron 45.0%
GCGGTAAGTTTATGTGTTGG+GGG + chr3_1:80068492-80068511 Msa0379160:intron 45.0%
GTTTATGTGTTGGGGGAAAG+AGG + chr3_1:80068499-80068518 Msa0379160:intron 45.0%
TTATGTGTTGGGGGAAAGAG+GGG + chr3_1:80068501-80068520 Msa0379160:intron 45.0%
TAGAAAGCCACAGAGCAAGA+GGG - chr3_1:80068767-80068786 None:intergenic 45.0%
TTAGAAAGCCACAGAGCAAG+AGG - chr3_1:80068768-80068787 None:intergenic 45.0%
TTTGTGCCTGCTGAAAATGG+TGG + chr3_1:80069179-80069198 Msa0379160:CDS 45.0%
! TTTCCACCACCATTTTCAGC+AGG - chr3_1:80069188-80069207 None:intergenic 45.0%
! GCCTTGGTTTGAAACAACTG+AGG + chr3_1:80069229-80069248 Msa0379160:CDS 45.0%
! CCCTCAGTTGTTTCAAACCA+AGG - chr3_1:80069233-80069252 None:intergenic 45.0%
AGGTCTCCTAAAACAGGCAT+CGG - chr3_1:80069269-80069288 None:intergenic 45.0%
GAGACAAGGTCTCCTAAAAC+AGG - chr3_1:80069275-80069294 None:intergenic 45.0%
GTCTCCCATTCAAACAAGTC+AGG + chr3_1:80069290-80069309 Msa0379160:CDS 45.0%
TAAACGCGTTGGAGCTTCTT+GGG + chr3_1:80069334-80069353 Msa0379160:CDS 45.0%
AAAAGAGGGGAGAGATTGTG+AGG + chr3_1:80069387-80069406 Msa0379160:CDS 45.0%
GGAAAGAATGTGATGCCAAC+TGG + chr3_1:80069408-80069427 Msa0379160:CDS 45.0%
!! GCCAACTGGCTTCCTAATTT+TGG + chr3_1:80069422-80069441 Msa0379160:CDS 45.0%
TTTGGTAGAGTCTGGCAATC+TGG + chr3_1:80069440-80069459 Msa0379160:CDS 45.0%
! CTTGGCATGGGTTGCAAAAT+GGG + chr3_1:80069708-80069727 Msa0379160:intron 45.0%
TCACGCCAACATGTCTAGAA+TGG + chr3_1:80069749-80069768 Msa0379160:intron 45.0%
TACCGCCATTCTAGACATGT+TGG - chr3_1:80069757-80069776 None:intergenic 45.0%
GGTTACTAGGTTAGCATGTC+TGG + chr3_1:80069892-80069911 Msa0379160:intron 45.0%
CCATCCGCTGCAAAGAAAAA+AGG - chr3_1:80070101-80070120 None:intergenic 45.0%
!!! CCTTTTTTCTTTGCAGCGGA+TGG + chr3_1:80070098-80070117 Msa0379160:intron 45.0%
TCTTTGCAGCGGATGGATAA+TGG + chr3_1:80070105-80070124 Msa0379160:intron 45.0%
! CAAGTGGGTGAAATTTCTGG+TGG + chr3_1:80070146-80070165 Msa0379160:three_prime_UTR 45.0%
TTCTGGTGGCAAACATGTTC+GGG + chr3_1:80070160-80070179 Msa0379160:three_prime_UTR 45.0%
GTGCGTTCATGTTGATCCTA+AGG + chr3_1:80070260-80070279 Msa0379160:three_prime_UTR 45.0%
GCGTTCATGTTGATCCTAAG+GGG + chr3_1:80070262-80070281 Msa0379160:three_prime_UTR 45.0%
! ATGACTGCAGTTTTCCCCTT+AGG - chr3_1:80070279-80070298 None:intergenic 45.0%
CTAGTCACACTAGTTGGTCA+CGG - chr3_1:80070410-80070429 None:intergenic 45.0%
GACCAACTAGTGTGACTAGA+AGG + chr3_1:80070411-80070430 Msa0379160:three_prime_UTR 45.0%
TGGTCAGCAATCTACTCGAC+AGG - chr3_1:80066827-80066846 None:intergenic 50.0%
AAGCTGATCGCAAAACGCAG+CGG + chr3_1:80066875-80066894 Msa0379160:five_prime_UTR 50.0%
!! AAAACGCAGCGGCTCTAAGT+TGG + chr3_1:80066886-80066905 Msa0379160:five_prime_UTR 50.0%
!! AGCGGCTCTAAGTTGGTCAT+CGG + chr3_1:80066893-80066912 Msa0379160:five_prime_UTR 50.0%
! GTATTTTCCTTCCCCTCACC+TGG + chr3_1:80066958-80066977 Msa0379160:intron 50.0%
TACAGAACCGTACCAGGTGA+GGG - chr3_1:80066973-80066992 None:intergenic 50.0%
ATACAGAACCGTACCAGGTG+AGG - chr3_1:80066974-80066993 None:intergenic 50.0%
! CCTTGTGCTTGCTTTAGGCT+TGG - chr3_1:80067368-80067387 None:intergenic 50.0%
CCAAGCCTAAAGCAAGCACA+AGG + chr3_1:80067365-80067384 Msa0379160:CDS 50.0%
GCGAGAGAGAAAGGTGGAAA+GGG - chr3_1:80067485-80067504 None:intergenic 50.0%
TTTGACGCGAGAGAGAAAGG+TGG - chr3_1:80067491-80067510 None:intergenic 50.0%
AGTTGAGGAGTAAGAGGGGA+AGG - chr3_1:80067550-80067569 None:intergenic 50.0%
! AGCTCTCCAGTTCTTTTGCC+TGG + chr3_1:80067620-80067639 Msa0379160:CDS 50.0%
GAAGGTCCAAAAACTGCTCC+AGG - chr3_1:80068035-80068054 None:intergenic 50.0%
CTGCCACACGAATGAGTATC+AGG + chr3_1:80068163-80068182 Msa0379160:CDS 50.0%
GTATCCTCTTCAGGACACTC+TGG + chr3_1:80068185-80068204 Msa0379160:CDS 50.0%
! AACTCCAGAGTGTCCTGAAG+AGG - chr3_1:80068192-80068211 None:intergenic 50.0%
!! TCTTCAGGACACTCTGGAGT+TGG + chr3_1:80068191-80068210 Msa0379160:CDS 50.0%
AGAAAGCCACAGAGCAAGAG+GGG - chr3_1:80068766-80068785 None:intergenic 50.0%
!! GGTGGTGGAAACGTTCATTC+TGG + chr3_1:80069197-80069216 Msa0379160:CDS 50.0%
! GTTGTTTCAAACCAAGGCGG+AGG - chr3_1:80069227-80069246 None:intergenic 50.0%
! ATGCACCCGATGCCTGTTTT+AGG + chr3_1:80069260-80069279 Msa0379160:CDS 50.0%
GGTCTCCTAAAACAGGCATC+GGG - chr3_1:80069268-80069287 None:intergenic 50.0%
CAAGAAGCTCCAACGCGTTT+AGG - chr3_1:80069335-80069354 None:intergenic 50.0%
CTAAACGCGTTGGAGCTTCT+TGG + chr3_1:80069333-80069352 Msa0379160:CDS 50.0%
!!! GGCACAAAGCAGACTGGTTT+TGG - chr3_1:80069630-80069649 None:intergenic 50.0%
AAACCAGTCTGCTTTGTGCC+TGG + chr3_1:80069630-80069649 Msa0379160:intron 50.0%
CACATTCGAAGCTTTCTGCC+TGG - chr3_1:80069659-80069678 None:intergenic 50.0%
! ATGTGAAGTGCTTTGTGCCC+TGG + chr3_1:80069674-80069693 Msa0379160:intron 50.0%
TTGCAACCCATGCCAAGCTT+GGG - chr3_1:80069705-80069724 None:intergenic 50.0%
TTTGCAACCCATGCCAAGCT+TGG - chr3_1:80069706-80069725 None:intergenic 50.0%
! GCTTGGCATGGGTTGCAAAA+TGG + chr3_1:80069707-80069726 Msa0379160:intron 50.0%
! CGCCAACATGTCTAGAATGG+CGG + chr3_1:80069752-80069771 Msa0379160:intron 50.0%
! TTGCAGCGGATGGATAATGG+TGG + chr3_1:80070108-80070127 Msa0379160:intron 50.0%
TCTGGTGGCAAACATGTTCG+GGG + chr3_1:80070161-80070180 Msa0379160:three_prime_UTR 50.0%
TTGACCCACACCCACAACAA+TGG + chr3_1:80070308-80070327 Msa0379160:three_prime_UTR 50.0%
TGACCCACACCCACAACAAT+GGG + chr3_1:80070309-80070328 Msa0379160:three_prime_UTR 50.0%
GCTGACCAACTGAACTCGAC+TGG + chr3_1:80066839-80066858 Msa0379160:intron 55.0%
TACGGCCAGTCGAGTTCAGT+TGG - chr3_1:80066847-80066866 None:intergenic 55.0%
CATCGGCACCCAGAAATTCC+AGG + chr3_1:80066910-80066929 Msa0379160:five_prime_UTR 55.0%
TTCCTTCCCCTCACCTGGTA+CGG + chr3_1:80066963-80066982 Msa0379160:intron 55.0%
ACAGAACCGTACCAGGTGAG+GGG - chr3_1:80066972-80066991 None:intergenic 55.0%
GATCAAAGGTTGTGTCGCGC+AGG - chr3_1:80067016-80067035 None:intergenic 55.0%
AGAAATCACGCGGTGCATGG+TGG - chr3_1:80067038-80067057 None:intergenic 55.0%
TGGAGAAATCACGCGGTGCA+TGG - chr3_1:80067041-80067060 None:intergenic 55.0%
ACCGATCTGAGAGCAAGAGC+CGG + chr3_1:80067338-80067357 Msa0379160:CDS 55.0%
TCCGGCTCTTGCTCTCAGAT+CGG - chr3_1:80067342-80067361 None:intergenic 55.0%
CGCGAGAGAGAAAGGTGGAA+AGG - chr3_1:80067486-80067505 None:intergenic 55.0%
TGTGAGTGCAGTGGGACAAG+AGG + chr3_1:80067964-80067983 Msa0379160:intron 55.0%
GGTGGACAATGGTCAAGCGA+TGG + chr3_1:80068453-80068472 Msa0379160:CDS 55.0%
!! GAAAGAGGGGAGGGTGTCTT+AGG + chr3_1:80068514-80068533 Msa0379160:intron 55.0%
ATTGCTCCCCTCTTGCTCTG+TGG + chr3_1:80068757-80068776 Msa0379160:intron 55.0%
AAAGTGGTCAGCGGAGAGAG+CGG + chr3_1:80068854-80068873 Msa0379160:CDS 55.0%
TGAGGAGGCTGTGAGTGTGA+TGG + chr3_1:80069081-80069100 Msa0379160:intron 55.0%
GTGCCTGCTGAAAATGGTGG+TGG + chr3_1:80069182-80069201 Msa0379160:CDS 55.0%
TCGCCCATTGTTGTGGGTGT+GGG - chr3_1:80070315-80070334 None:intergenic 55.0%
ACACCCACAACAATGGGCGA+GGG + chr3_1:80070315-80070334 Msa0379160:three_prime_UTR 55.0%
CAACCCTCGCCCATTGTTGT+GGG - chr3_1:80070321-80070340 None:intergenic 55.0%
ACAACCCTCGCCCATTGTTG+TGG - chr3_1:80070322-80070341 None:intergenic 55.0%
AACCGTACCAGGTGAGGGGA+AGG - chr3_1:80066968-80066987 None:intergenic 60.0%
GCGCGATACAGAACCGTACC+AGG - chr3_1:80066979-80066998 None:intergenic 60.0%
!! CGCGGTGCATGGTGGATCAA+AGG - chr3_1:80067030-80067049 None:intergenic 60.0%
TGGTGGCACAGTGGATCAGC+TGG + chr3_1:80067799-80067818 Msa0379160:CDS 60.0%
ACACTGGAGCACGCTTCCGA+AGG - chr3_1:80068254-80068273 None:intergenic 60.0%
TGTGTTGGGGGAAAGAGGGG+AGG + chr3_1:80068504-80068523 Msa0379160:intron 60.0%
GTGTTGGGGGAAAGAGGGGA+GGG + chr3_1:80068505-80068524 Msa0379160:intron 60.0%
!! ATTCTGGAGCACCTCCGCCT+TGG + chr3_1:80069213-80069232 Msa0379160:CDS 60.0%
CCAGTCTGCTTTGTGCCTGG+CGG + chr3_1:80069633-80069652 Msa0379160:intron 60.0%
GCCAAGCCCAAGCTTGGCAT+GGG + chr3_1:80069696-80069715 Msa0379160:intron 60.0%
ACCCATGCCAAGCTTGGGCT+TGG - chr3_1:80069700-80069719 None:intergenic 60.0%
CTCGCCCATTGTTGTGGGTG+TGG - chr3_1:80070316-80070335 None:intergenic 60.0%
CACACCCACAACAATGGGCG+AGG + chr3_1:80070314-80070333 Msa0379160:three_prime_UTR 60.0%
AGCGGAGAGAGCGGTCAGCA+AGG + chr3_1:80068863-80068882 Msa0379160:CDS 65.0%
CCGCCAGGCACAAAGCAGAC+TGG - chr3_1:80069636-80069655 None:intergenic 65.0%
AAGCTTTCTGCCTGGCCGCC+AGG - chr3_1:80069651-80069670 None:intergenic 65.0%
GCCAAGCTTGGGCTTGGCCA+GGG - chr3_1:80069694-80069713 None:intergenic 65.0%
TGCCAAGCTTGGGCTTGGCC+AGG - chr3_1:80069695-80069714 None:intergenic 65.0%
GGCCAAGCCCAAGCTTGGCA+TGG + chr3_1:80069695-80069714 Msa0379160:intron 65.0%
CTGCTTTGTGCCTGGCGGCC+AGG + chr3_1:80069638-80069657 Msa0379160:intron 70.0%
GCCCTGGCCAAGCCCAAGCT+TGG + chr3_1:80069690-80069709 Msa0379160:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 80066586 80070617 80066586 ID=Msa0379160;Name=Msa0379160
chr3_1 mRNA 80066586 80070617 80066586 ID=Msa0379160-mRNA-1;Parent=Msa0379160;Name=Msa0379160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=295|1|1|1|0.66|0.6|10|477|444
chr3_1 exon 80066586 80066719 80066586 ID=Msa0379160-mRNA-1:exon:19882;Parent=Msa0379160-mRNA-1
chr3_1 exon 80066768 80066810 80066768 ID=Msa0379160-mRNA-1:exon:19883;Parent=Msa0379160-mRNA-1
chr3_1 exon 80066840 80066931 80066840 ID=Msa0379160-mRNA-1:exon:19884;Parent=Msa0379160-mRNA-1
chr3_1 exon 80067305 80067641 80067305 ID=Msa0379160-mRNA-1:exon:19885;Parent=Msa0379160-mRNA-1
chr3_1 exon 80067730 80067856 80067730 ID=Msa0379160-mRNA-1:exon:19886;Parent=Msa0379160-mRNA-1
chr3_1 exon 80067975 80068302 80067975 ID=Msa0379160-mRNA-1:exon:19887;Parent=Msa0379160-mRNA-1
chr3_1 exon 80068421 80068494 80068421 ID=Msa0379160-mRNA-1:exon:19888;Parent=Msa0379160-mRNA-1
chr3_1 exon 80068839 80068884 80068839 ID=Msa0379160-mRNA-1:exon:19889;Parent=Msa0379160-mRNA-1
chr3_1 exon 80069153 80069574 80069153 ID=Msa0379160-mRNA-1:exon:19890;Parent=Msa0379160-mRNA-1
chr3_1 exon 80070114 80070617 80070114 ID=Msa0379160-mRNA-1:exon:19891;Parent=Msa0379160-mRNA-1
chr3_1 five_prime_UTR 80066586 80066719 80066586 ID=Msa0379160-mRNA-1:five_prime_utr;Parent=Msa0379160-mRNA-1
chr3_1 five_prime_UTR 80066768 80066810 80066768 ID=Msa0379160-mRNA-1:five_prime_utr;Parent=Msa0379160-mRNA-1
chr3_1 five_prime_UTR 80066840 80066931 80066840 ID=Msa0379160-mRNA-1:five_prime_utr;Parent=Msa0379160-mRNA-1
chr3_1 five_prime_UTR 80067305 80067330 80067305 ID=Msa0379160-mRNA-1:five_prime_utr;Parent=Msa0379160-mRNA-1
chr3_1 CDS 80067331 80067641 80067331 ID=Msa0379160-mRNA-1:cds;Parent=Msa0379160-mRNA-1
chr3_1 CDS 80067730 80067856 80067730 ID=Msa0379160-mRNA-1:cds;Parent=Msa0379160-mRNA-1
chr3_1 CDS 80067975 80068302 80067975 ID=Msa0379160-mRNA-1:cds;Parent=Msa0379160-mRNA-1
chr3_1 CDS 80068421 80068494 80068421 ID=Msa0379160-mRNA-1:cds;Parent=Msa0379160-mRNA-1
chr3_1 CDS 80068839 80068884 80068839 ID=Msa0379160-mRNA-1:cds;Parent=Msa0379160-mRNA-1
chr3_1 CDS 80069153 80069574 80069153 ID=Msa0379160-mRNA-1:cds;Parent=Msa0379160-mRNA-1
chr3_1 CDS 80070114 80070140 80070114 ID=Msa0379160-mRNA-1:cds;Parent=Msa0379160-mRNA-1
chr3_1 three_prime_UTR 80070141 80070617 80070141 ID=Msa0379160-mRNA-1:three_prime_utr;Parent=Msa0379160-mRNA-1
Gene Sequence

>Msa0379160

ATGAGGGACCGATCTGAGAGCAAGAGCCGGAGTTCCAAGCCTAAAGCAAGCACAAGGGAGAAGAAGAAAAGCGAGTTTGAGTTCTGTAAGGTCTGCAAAATAAATCACGACCAAGGTCTTCGCCACAAATATTTTCCTAAGCACAAACAATCCCTTTCCACCTTTCTCTCTCGCGTCAAAAACAAACTCTCCGATGTTCGCTTCTTCCTCAAAACACCTTCCCCTCTTACTCCTCAACTTGATTCCCGTAATCGCTTCTGGTGTGTTTTCTGTGACCAAGATATTGATGAGCTCTCCAGTTCTTTTGCCTGTGAAAATGCGATTCGTCACCTAGCAAGTGTACAACATGTGAATAAGTTGAAGCACTTCTTTTGGAAATATGGTGGCACAGTGGATCAGCTGGATGTGTTTACAGTTTCTGATAATGACGTTGCAAAGTGGGACAAGAGGTGCACGACCCTTAAAAAAGAAGCTTCATTGCAAAATGAGGAAAGTCCTGGAGCAGTTTTTGGACCTTCAAGTGATATCCATAATCAATCGAACAATGAAAATATTGATAGTTTTGAAAATAATATTTATTCCAATTCTGTGAACTCGTATCCTTCAAATGTTGTTTTGCCTTTACACTGCCACACGAATGAGTATCAGGTATCCTCTTCAGGACACTCTGGAGTTGGAAATACTGGCCTTTTAGATATTGGTAAATCTTCTTTACCTTCGGAAGCGTGCTCCAGTGTGAATACCCTTGCTTTGCAGGATTTTGCAGCTGAATGGAGAAGCCACAAACTCCCTTATAATGGTGGACAATGGTCAAGCGATGGATACTCATGTAATAAAGCGGTTCTTGATAATGGTAAAGTGGTCAGCGGAGAGAGCGGTCAGCAAGGTATACAAATGCTCACCCGTATTTCTTTTGTGCCTGCTGAAAATGGTGGTGGAAACGTTCATTCTGGAGCACCTCCGCCTTGGTTTGAAACAACTGAGGGAGTTCAGATGCACCCGATGCCTGTTTTAGGAGACCTTGTCTCCCATTCAAACAAGTCAGGGAAGAACAAAAAGTTGAATCCTAAACGCGTTGGAGCTTCTTGGGCAGAAAAGAGAAAGATTGAAATGGAGATGGAAAAGAGGGGAGAGATTGTGAGGAAAGAATGTGATGCCAACTGGCTTCCTAATTTTGGTAGAGTCTGGCAATCTGGTAGCAGAAGAGAATCCAGAAAAGAATTTGAAAAGGAGAAACAAGAGTTGTCAAATGTTGAAGCTCAACCTGAGATGCCAATCAAGATACAACCTTATATTAGCAAAAGAATGCGGATGGATAATGGTGGCGATAAATGA
Protein sequence

>Msa0379160

MRDRSESKSRSSKPKASTREKKKSEFEFCKVCKINHDQGLRHKYFPKHKQSLSTFLSRVKNKLSDVRFFLKTPSPLTPQLDSRNRFWCVFCDQDIDELSSSFACENAIRHLASVQHVNKLKHFFWKYGGTVDQLDVFTVSDNDVAKWDKRCTTLKKEASLQNEESPGAVFGPSSDIHNQSNNENIDSFENNIYSNSVNSYPSNVVLPLHCHTNEYQVSSSGHSGVGNTGLLDIGKSSLPSEACSSVNTLALQDFAAEWRSHKLPYNGGQWSSDGYSCNKAVLDNGKVVSGESGQQGIQMLTRISFVPAENGGGNVHSGAPPPWFETTEGVQMHPMPVLGDLVSHSNKSGKNKKLNPKRVGASWAEKRKIEMEMEKRGEIVRKECDANWLPNFGRVWQSGSRRESRKEFEKEKQELSNVEAQPEMPIKIQPYISKRMRMDNGGDK*