AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0477960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477960 MtrunA17_Chr3g0140391 99.468 376 2 0 1 376 1 376 0.0 769
Msa0477960 MtrunA17_Chr6g0479331 54.485 301 137 0 72 372 91 391 1.28e-115 341
Msa0477960 MtrunA17_Chr1g0209741 35.587 281 165 9 103 371 101 377 2.27e-46 162
Msa0477960 MtrunA17_Chr6g0460121 35.507 276 163 7 107 371 29 300 7.61e-45 156
Msa0477960 MtrunA17_Chr6g0457581 32.530 332 200 10 60 371 10 337 9.30e-45 157
Msa0477960 MtrunA17_Chr4g0047891 34.694 294 162 11 97 371 41 323 1.61e-40 145
Msa0477960 MtrunA17_Chr4g0071671 32.986 288 181 7 95 372 30 315 5.13e-40 144
Msa0477960 MtrunA17_Chr7g0215451 31.429 315 192 9 75 370 28 337 5.04e-35 131
Msa0477960 MtrunA17_Chr5g0423541 31.071 280 179 8 103 371 115 391 1.15e-34 131
Msa0477960 MtrunA17_Chr1g0195501 32.857 280 173 8 103 371 16 291 2.06e-34 129
Msa0477960 MtrunA17_Chr1g0212901 31.834 289 184 8 93 371 8 293 7.16e-34 127
Msa0477960 MtrunA17_Chr7g0269371 29.514 288 189 8 93 370 6 289 1.17e-33 127
Msa0477960 MtrunA17_Chr1g0199771 31.119 286 165 10 103 368 39 312 8.57e-30 117
Msa0477960 MtrunA17_Chr6g0484431 40.741 108 61 2 103 207 66 173 6.26e-18 83.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0477960 AT5G11650.1 72.513 382 92 4 1 372 1 379 0.0 525
Msa0477960 AT5G11650.2 68.874 302 81 4 1 292 1 299 2.49e-132 381
Msa0477960 AT1G73480.1 56.386 321 134 2 52 372 149 463 3.39e-128 376
Msa0477960 AT1G18360.1 55.247 324 131 4 54 372 68 382 9.47e-125 365
Msa0477960 AT1G52760.1 33.333 288 180 7 95 372 39 324 6.21e-43 152
Msa0477960 AT2G39420.1 34.364 291 176 8 93 372 9 295 3.62e-42 150
Msa0477960 AT2G39410.2 33.557 298 183 8 85 371 1 294 1.07e-41 149
Msa0477960 AT1G11090.1 32.515 326 177 14 65 371 13 314 1.97e-40 145
Msa0477960 AT5G16120.4 30.725 345 215 10 47 370 29 370 1.10e-38 142
Msa0477960 AT5G16120.2 30.725 345 215 10 47 370 15 356 1.11e-38 142
Msa0477960 AT2G39400.1 34.409 279 170 6 103 371 13 288 4.89e-38 139
Msa0477960 AT5G16120.3 30.514 331 208 9 59 370 11 338 8.65e-38 139
Msa0477960 AT5G16120.1 30.514 331 208 9 59 370 11 338 8.65e-38 139
Msa0477960 AT1G77420.1 32.394 284 172 9 103 372 102 379 3.60e-34 130
Msa0477960 AT3G55180.1 35.106 282 165 11 103 371 13 289 6.01e-34 128
Msa0477960 AT3G55190.1 32.215 298 186 10 89 374 5 298 5.80e-33 125
Msa0477960 AT2G47630.1 32.042 284 176 9 102 371 13 293 2.51e-29 116
Msa0477960 AT5G14980.1 27.500 280 180 7 107 371 44 315 4.73e-29 115
Msa0477960 AT3G62860.1 30.824 279 179 8 103 371 17 291 7.32e-29 115
Msa0477960 AT2G47630.2 32.400 250 157 6 131 371 2 248 3.15e-27 110
Msa0477960 AT3G62860.2 32.218 239 150 6 142 371 13 248 6.03e-27 109
Msa0477960 AT2G47630.3 33.054 239 148 6 142 371 33 268 6.40e-27 109
Msa0477960 AT5G19290.1 28.621 290 173 11 103 371 40 316 2.44e-25 105
Msa0477960 AT2G39400.2 30.698 215 137 6 103 309 13 223 1.21e-19 87.8

Find 150 sgRNAs with CRISPR-Local

Find 316 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTTATTATCAGGATTT+AGG 0.126422 3_3:-82451555 None:intergenic
CGCTCTTGGTTCCCGGTTTA+CGG 0.245680 3_3:+82447949 Msa0477960:CDS
ATATTAACAGGGAGCTTTCT+TGG 0.251583 3_3:+82449387 Msa0477960:intron
TCGTTCTCCCTCGTCGGAAT+AGG 0.253325 3_3:+82447749 Msa0477960:CDS
ATATTGTGGGATTTATTATC+AGG 0.282886 3_3:-82451562 None:intergenic
TGAAGAGAAGGTGGTTGGTT+AGG 0.292925 3_3:+82447803 Msa0477960:CDS
AAAGAGGCATTCCAGTTTCT+AGG 0.295461 3_3:+82450929 Msa0477960:CDS
GCTCCAAGGTTCCAATTTAA+AGG 0.300871 3_3:+82450898 Msa0477960:CDS
TTCACAAGATTTATACAATA+AGG 0.302609 3_3:+82451131 Msa0477960:CDS
GGATTTATTATCAGGATTTA+GGG 0.306373 3_3:-82451554 None:intergenic
TGCTTCCGCCACCCACTCTT+CGG 0.306651 3_3:-82451391 None:intergenic
GCTTCCGCCACCCACTCTTC+GGG 0.308444 3_3:-82451390 None:intergenic
GGAATACCATGCTTTCTCTT+TGG 0.330795 3_3:+82449433 Msa0477960:CDS
ATGATATTCGCAGTATTTCA+TGG 0.338631 3_3:-82451023 None:intergenic
CGTTCTCCCTCGTCGGAATA+GGG 0.345845 3_3:+82447750 Msa0477960:CDS
GGGAAGAAGAGGATACGTTT+AGG 0.352429 3_3:+82447824 Msa0477960:CDS
GAAGAGAAGGTGGTTGGTTA+GGG 0.360796 3_3:+82447804 Msa0477960:CDS
ATCGCTAACGGCGGCGGCGG+TGG 0.362981 3_3:-82447601 None:intergenic
GGCGGCGGCGGTGGTGGCGG+AGG 0.364066 3_3:-82447592 None:intergenic
GCAAAACTTACGCCAACTAT+TGG 0.365315 3_3:-82449658 None:intergenic
GTTAGTGTATGTTTGTGAAT+AGG 0.366495 3_3:-82447391 None:intergenic
TTTCTCTTTGGTCACTCAAC+TGG 0.369424 3_3:+82449445 Msa0477960:CDS
CTTTGAGAAGAGGAATTATA+CGG 0.370807 3_3:-82447672 None:intergenic
AAGAGAAAGCATGGTATTCC+AGG 0.371380 3_3:-82449430 None:intergenic
GCTAACGGCGGCGGCGGTGG+TGG 0.384604 3_3:-82447598 None:intergenic
TGGCCAGTTCGAACTCTAAT+AGG 0.393321 3_3:-82451003 None:intergenic
CATGGCAATGGGTACGGGTG+GGG 0.393671 3_3:-82447368 None:intergenic
GCTGCTGGATCCCTAGAAAC+TGG 0.395115 3_3:-82450940 None:intergenic
TAAATTATATATTGTGTGTA+GGG 0.395581 3_3:+82451465 Msa0477960:three_prime_UTR
CTCTTTGGTCACTCAACTGG+AGG 0.400550 3_3:+82449448 Msa0477960:CDS
TAGGGATCCAGCAGCTTTGT+TGG 0.405367 3_3:+82450948 Msa0477960:CDS
CACATTGAAGTGATGGTAGA+AGG 0.405601 3_3:+82449592 Msa0477960:CDS
GCGGTGGTGGCGGAGGAAAG+TGG 0.413984 3_3:-82447585 None:intergenic
GTCTTGATGATGGTTGTTGC+CGG 0.415404 3_3:+82447878 Msa0477960:CDS
AACGGCGGCGGCGGTGGTGG+CGG 0.419356 3_3:-82447595 None:intergenic
GAGAAATTTGTACATTCAGC+TGG 0.422724 3_3:+82451506 Msa0477960:three_prime_UTR
GGCATGGCAATGGGTACGGG+TGG 0.423677 3_3:-82447370 None:intergenic
AAGAGGAATTATACGGTTGC+TGG 0.429463 3_3:-82447665 None:intergenic
TACTTAAGATCACCGTAAAC+CGG 0.431025 3_3:-82447961 None:intergenic
GCGGAGGAAAGTGGCGGTGG+CGG 0.434146 3_3:-82447576 None:intergenic
GTGGCGGAGGAAAGTGGCGG+TGG 0.435667 3_3:-82447579 None:intergenic
GGTATTATGATCATCATTCA+TGG 0.444769 3_3:+82448735 Msa0477960:CDS
TCACTCAACTGGAGGGGCTG+TGG 0.448260 3_3:+82449456 Msa0477960:CDS
GGCAAAGTACTCTGATCCTC+TGG 0.452619 3_3:+82450969 Msa0477960:CDS
ACCGTTAGATCATCAATAAA+CGG 0.453579 3_3:+82447412 Msa0477960:five_prime_UTR
TCTTGTTCGTTCTCCCTCGT+CGG 0.453724 3_3:+82447743 Msa0477960:CDS
TTCTACACACTTGCCAACTT+TGG 0.457166 3_3:-82451356 None:intergenic
GCTCCTTTAAATTGGAACCT+TGG 0.458257 3_3:-82450901 None:intergenic
CTTCTCTTCAAATTCTTCCT+CGG 0.459294 3_3:-82447790 None:intergenic
GGAGCTACCAGAGAAAATAT+TGG 0.459523 3_3:-82450880 None:intergenic
AACTTTCTAACTACCAAAGT+TGG 0.459746 3_3:+82451343 Msa0477960:three_prime_UTR
TACTTTGCCAACAAAGCTGC+TGG 0.462234 3_3:-82450955 None:intergenic
AAAGACATAAAGCTTTATGA+TGG 0.463555 3_3:+82451168 Msa0477960:CDS
CAGTTAACATTGTGCAACTT+TGG 0.464279 3_3:+82449036 Msa0477960:CDS
TTAAATTATATATTGTGTGT+AGG 0.465601 3_3:+82451464 Msa0477960:three_prime_UTR
CAATGGGTACGGGTGGGGAC+GGG 0.466371 3_3:-82447363 None:intergenic
TTGCTGGCACCCGACGTTAG+TGG 0.473238 3_3:-82447649 None:intergenic
CACGCTCCGGCTCAAACAAA+AGG 0.473659 3_3:-82451203 None:intergenic
GACATCGCTAACGGCGGCGG+CGG 0.474563 3_3:-82447604 None:intergenic
GCAATGGGTACGGGTGGGGA+CGG 0.474688 3_3:-82447364 None:intergenic
TGTTCCTTCTCTTGATCAAG+TGG 0.475105 3_3:+82449208 Msa0477960:CDS
GTTGGAATGGGTCTTGATGA+TGG 0.478644 3_3:+82447868 Msa0477960:CDS
AATAGGCATGGCAATGGGTA+CGG 0.484610 3_3:-82447374 None:intergenic
AACTTTGGTAGTTAGAAAGT+TGG 0.486077 3_3:-82451341 None:intergenic
ATAGGCATGGCAATGGGTAC+GGG 0.492406 3_3:-82447373 None:intergenic
AGAGCGTTGGCGCAGGATGT+TGG 0.496334 3_3:+82447850 Msa0477960:CDS
TCTTTGGTCACTCAACTGGA+GGG 0.497603 3_3:+82449449 Msa0477960:CDS
TAGCTCAGGACATTATCAAC+TGG 0.499576 3_3:+82451232 Msa0477960:CDS
TTGGCGCAGGATGTTGGAAT+GGG 0.501149 3_3:+82447856 Msa0477960:CDS
AAGATTAGATCAGAGAATCC+TGG 0.506314 3_3:+82449412 Msa0477960:CDS
GTTGGCGCAGGATGTTGGAA+TGG 0.506491 3_3:+82447855 Msa0477960:CDS
AGTGGGTGGCGGAAGCAGAT+AGG 0.506924 3_3:+82451397 Msa0477960:three_prime_UTR
GTGGTTGGTTAGGGAAGAAG+AGG 0.510352 3_3:+82447813 Msa0477960:CDS
ACATACTACACGATATATTG+TGG 0.511571 3_3:-82451576 None:intergenic
GAAGACATCGCTAACGGCGG+CGG 0.512381 3_3:-82447607 None:intergenic
CTTTATCAGCAGTTCCATGC+AGG 0.512579 3_3:-82451092 None:intergenic
AAGCCATCTCATCCAATAGT+TGG 0.515260 3_3:+82449646 Msa0477960:CDS
TCCGTTTATTGATGATCTAA+CGG 0.517013 3_3:-82447413 None:intergenic
CTTTGGTCACTCAACTGGAG+GGG 0.520149 3_3:+82449450 Msa0477960:CDS
GAATTTGAAGAGAAGGTGGT+TGG 0.520875 3_3:+82447798 Msa0477960:CDS
CCCGACGTTAGTGGCTCCAT+CGG 0.522200 3_3:-82447640 None:intergenic
GATGGCTTCACACGCAAAGC+TGG 0.522765 3_3:-82449631 None:intergenic
TGGCTCCATCGGCGCATCGA+TGG 0.526428 3_3:-82447629 None:intergenic
GCATGGCAATGGGTACGGGT+GGG 0.531155 3_3:-82447369 None:intergenic
TACGTTTAGGAGAAGAGCGT+TGG 0.532582 3_3:+82447837 Msa0477960:CDS
AAGAGGCATTCCAGTTTCTA+GGG 0.532997 3_3:+82450930 Msa0477960:CDS
CCGATGGAGCCACTAACGTC+GGG 0.538648 3_3:+82447640 Msa0477960:CDS
GTACCATTCTTTGTCCTGCA+TGG 0.539898 3_3:+82451078 Msa0477960:CDS
ATAGGGTATGGGGATGGGGA+AGG 0.540249 3_3:+82447335 None:intergenic
GGAGCGTGAAGAGATAGCTC+AGG 0.541686 3_3:+82451218 Msa0477960:CDS
TTGAAAATGTCAATAACGGA+AGG 0.544028 3_3:+82451281 Msa0477960:exon
TTGGTGTCTATGCAATGGAC+TGG 0.544681 3_3:+82449055 Msa0477960:CDS
TTTAAAGGAGCAAACAAAAG+AGG 0.545499 3_3:+82450913 Msa0477960:CDS
CATACTACACGATATATTGT+GGG 0.546892 3_3:-82451575 None:intergenic
TGAGCTATCTCTTCACGCTC+CGG 0.549656 3_3:-82451216 None:intergenic
AGTGGCGGTGGCGGAAGAAG+CGG 0.550481 3_3:-82447567 None:intergenic
GTTCCATGCAGGACAAAGAA+TGG 0.551493 3_3:-82451081 None:intergenic
TGATAAAGTAACTGATCCAT+TGG 0.551814 3_3:+82451107 Msa0477960:CDS
GGACCTATTAGAGTTCGAAC+TGG 0.553822 3_3:+82451000 Msa0477960:CDS
AAATTCTTCCTCGGAGAAGA+CGG 0.555599 3_3:-82447781 None:intergenic
GTATTATGATCATCATTCAT+GGG 0.557114 3_3:+82448736 Msa0477960:CDS
GCATTTGAAAATGTCAATAA+CGG 0.557899 3_3:+82451277 Msa0477960:exon
GCTCTGAACGCTTTGAGAAG+AGG 0.558966 3_3:-82447682 None:intergenic
CTTCCGCCACCCACTCTTCG+GGG 0.559094 3_3:-82451389 None:intergenic
TATAAATCTTGTGAAGCCAA+TGG 0.559126 3_3:-82451123 None:intergenic
GGAGGTAGCGATGGATTACA+TGG 0.561526 3_3:+82449182 Msa0477960:CDS
CGAGGAAGAATTTGAAGAGA+AGG 0.564528 3_3:+82447791 Msa0477960:CDS
ATAAATATAAACACAACTGT+AGG 0.564705 3_3:+82447458 Msa0477960:five_prime_UTR
GTCTTCCATCGATGCGCCGA+TGG 0.566115 3_3:+82447624 Msa0477960:CDS
TAGGAGAAGAGCGTTGGCGC+AGG 0.566223 3_3:+82447843 Msa0477960:CDS
TTGATGATGGTTGTTGCCGG+TGG 0.569503 3_3:+82447881 Msa0477960:CDS
GTGAAGTCGCCCCGAAGAGT+GGG 0.572279 3_3:+82451380 Msa0477960:three_prime_UTR
ACGCCAACTATTGGATGAGA+TGG 0.572335 3_3:-82449649 None:intergenic
ATTGTGTGTAGGGATTGTAT+TGG 0.573014 3_3:+82451475 Msa0477960:three_prime_UTR
ACAGGTCATGGAGGTAGCGA+TGG 0.580290 3_3:+82449173 Msa0477960:intron
TGAATGTACAAATTTCTCAA+TGG 0.581196 3_3:-82451501 None:intergenic
GAAGATATGCAGATTTCGCT+AGG 0.582302 3_3:+82449013 Msa0477960:CDS
GTGGTGGCGGAGGAAAGTGG+CGG 0.584967 3_3:-82447582 None:intergenic
GAGTGACCAAAGAGAAAGCA+TGG 0.586609 3_3:-82449439 None:intergenic
ACGCCCTCACATTGAAGTGA+TGG 0.586809 3_3:+82449585 Msa0477960:CDS
ACTTAAGATCACCGTAAACC+GGG 0.587787 3_3:-82447960 None:intergenic
AGTGAAGTCGCCCCGAAGAG+TGG 0.591565 3_3:+82451379 Msa0477960:three_prime_UTR
ATTATCAGGATTTAGGGCCA+CGG 0.603366 3_3:-82451548 None:intergenic
AAGTCGCCCCGAAGAGTGGG+TGG 0.603817 3_3:+82451383 Msa0477960:three_prime_UTR
GAACGAACAAGAGAAAAGAG+AGG 0.604398 3_3:-82447732 None:intergenic
GGAAGAATTTGAAGAGAAGG+TGG 0.613934 3_3:+82447794 Msa0477960:CDS
TCGCCCCGAAGAGTGGGTGG+CGG 0.617674 3_3:+82451386 Msa0477960:three_prime_UTR
CTACCATCACTTCAATGTGA+GGG 0.617795 3_3:-82449588 None:intergenic
TTCATGGGCTTAATGAACAC+AGG 0.620603 3_3:+82448751 Msa0477960:CDS
TCAGGACATTATCAACTGGA+TGG 0.624877 3_3:+82451236 Msa0477960:CDS
AGAAAATCGAAGTATTCCAC+CGG 0.625417 3_3:-82447897 None:intergenic
TTGTGAATAGGCATGGCAAT+GGG 0.626527 3_3:-82447379 None:intergenic
TGTATGTTTGTGAATAGGCA+TGG 0.631795 3_3:-82447386 None:intergenic
CAACTTTGGTGTCTATGCAA+TGG 0.631929 3_3:+82449050 Msa0477960:CDS
TCTACCATCACTTCAATGTG+AGG 0.636222 3_3:-82449589 None:intergenic
TGTGTAGACGAAGATGAGAG+AGG 0.642743 3_3:-82447704 None:intergenic
TCGATGGAAGACATCGCTAA+CGG 0.645152 3_3:-82447613 None:intergenic
TTTGTGAATAGGCATGGCAA+TGG 0.646032 3_3:-82447380 None:intergenic
GCAACCACTTGATCAAGAGA+AGG 0.648753 3_3:-82449212 None:intergenic
CGGCTCCACCGTCTTCTCCG+AGG 0.656016 3_3:+82447773 Msa0477960:CDS
GAGCCGCCCTATTCCGACGA+GGG 0.658206 3_3:-82447756 None:intergenic
GCCGATGGAGCCACTAACGT+CGG 0.664482 3_3:+82447639 Msa0477960:CDS
ATAGGTCCTGTGTAGACCAG+AGG 0.665370 3_3:-82450985 None:intergenic
TCTGATCCTCTGGTCTACAC+AGG 0.667077 3_3:+82450979 Msa0477960:CDS
TTCTTCCTCGGAGAAGACGG+TGG 0.672952 3_3:-82447778 None:intergenic
GTCTATGCAATGGACTGGAT+AGG 0.677930 3_3:+82449060 Msa0477960:CDS
TCTCCCTCGTCGGAATAGGG+CGG 0.690876 3_3:+82447753 Msa0477960:CDS
ATGGAAGACATCGCTAACGG+CGG 0.697848 3_3:-82447610 None:intergenic
TTTATTGCTACAGGTCATGG+AGG 0.698534 3_3:+82449164 Msa0477960:intron
GGAGCCGCCCTATTCCGACG+AGG 0.713676 3_3:-82447757 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAACATATTAAGTTAAAAAA+GGG - chr3_3:82448560-82448579 None:intergenic 10.0%
!! AAAACATATTAAGTTAAAAA+AGG - chr3_3:82448561-82448580 None:intergenic 10.0%
!!! CTAAAAAAAAATCATATTTT+GGG - chr3_3:82448868-82448887 None:intergenic 10.0%
!! ATATTTATTTATATGTATTG+GGG - chr3_3:82448915-82448934 None:intergenic 10.0%
!!! TAAATATTTGTTTTTATACT+TGG + chr3_3:82449272-82449291 Msa0477960:intron 10.0%
!! GTTTATGTTTATGATAAAAA+TGG + chr3_3:82448449-82448468 Msa0477960:intron 15.0%
!!! GCTAAAAAAAAATCATATTT+TGG - chr3_3:82448869-82448888 None:intergenic 15.0%
!!! ATTTTTTTTTAGCTTTTGTT+GGG + chr3_3:82448876-82448895 Msa0477960:intron 15.0%
!! TTCATAAATTTAATAACAGA+AGG - chr3_3:82449513-82449532 None:intergenic 15.0%
!! TAAATTTATGAAATCATTGT+TGG + chr3_3:82449521-82449540 Msa0477960:intron 15.0%
!!! ATTTTATTTTATTTAGGTGT+TGG + chr3_3:82451428-82451447 Msa0477960:three_prime_UTR 15.0%
!! TTAAATTATATATTGTGTGT+AGG + chr3_3:82451464-82451483 Msa0477960:three_prime_UTR 15.0%
!! TAAATTATATATTGTGTGTA+GGG + chr3_3:82451465-82451484 Msa0477960:three_prime_UTR 15.0%
!! ATAAATATAAACACAACTGT+AGG + chr3_3:82447458-82447477 Msa0477960:five_prime_UTR 20.0%
!!! GTTGATAATTATGTATGTTA+AGG + chr3_3:82448042-82448061 Msa0477960:intron 20.0%
!! GAGTTTCATTTATATCTTAA+AGG + chr3_3:82448337-82448356 Msa0477960:intron 20.0%
!!! GATTTTTTTTTAGCTTTTGT+TGG + chr3_3:82448875-82448894 Msa0477960:intron 20.0%
!!! TTTTTTTTTAGCTTTTGTTG+GGG + chr3_3:82448877-82448896 Msa0477960:intron 20.0%
!! TGATCGTAATAATATTAACA+GGG + chr3_3:82449376-82449395 Msa0477960:intron 20.0%
!!! TAATTTCTGCATTTTTATGT+AGG + chr3_3:82449555-82449574 Msa0477960:intron 20.0%
!! TCGATAAATTCAAATGAATT+AGG - chr3_3:82449911-82449930 None:intergenic 20.0%
!! ATATAGTGATTAGAATGATA+GGG - chr3_3:82450143-82450162 None:intergenic 20.0%
!! TATATAGTGATTAGAATGAT+AGG - chr3_3:82450144-82450163 None:intergenic 20.0%
!! TCATTCTAATCACTATATAA+AGG + chr3_3:82450145-82450164 Msa0477960:intron 20.0%
!! AAACCAAATGAAAAAAAAAG+TGG - chr3_3:82450213-82450232 None:intergenic 20.0%
!! TTCACAAGATTTATACAATA+AGG + chr3_3:82451131-82451150 Msa0477960:CDS 20.0%
!!! TTTCAAATTTTTCGATTGAT+TGG + chr3_3:82451598-82451617 Msa0477960:three_prime_UTR 20.0%
! GAACTTCAATTTCACAAATT+TGG - chr3_3:82448150-82448169 None:intergenic 25.0%
! TTGTGAAATTGAAGTTCAAT+TGG + chr3_3:82448153-82448172 Msa0477960:intron 25.0%
! TTGAAATTGTGAGATTTCTA+AGG + chr3_3:82448206-82448225 Msa0477960:intron 25.0%
! TCTAAGGAAAATTTAGAAAC+TGG + chr3_3:82448222-82448241 Msa0477960:intron 25.0%
! CTAAGGAAAATTTAGAAACT+GGG + chr3_3:82448223-82448242 Msa0477960:intron 25.0%
! ATGAAGAACAACATAAATAC+AGG - chr3_3:82448265-82448284 None:intergenic 25.0%
! AGTATATTGATATGCTATAC+TGG + chr3_3:82448306-82448325 Msa0477960:intron 25.0%
! GTATTATGATCATCATTCAT+GGG + chr3_3:82448736-82448755 Msa0477960:CDS 25.0%
!!! TTTTGGGAAAAAGTAAGTAA+AGG - chr3_3:82448852-82448871 None:intergenic 25.0%
!!! TTTTTTTTAGCTTTTGTTGG+GGG + chr3_3:82448878-82448897 Msa0477960:intron 25.0%
! AGATGATGATATGAAGTATA+AGG - chr3_3:82449119-82449138 None:intergenic 25.0%
! TAAAACAAATAACTTCAGAC+CGG - chr3_3:82449148-82449167 None:intergenic 25.0%
!!! GTTATTTGTTTTATTGCTAC+AGG + chr3_3:82449155-82449174 Msa0477960:intron 25.0%
! CGAAAACATTAAATGGTATT+TGG - chr3_3:82449339-82449358 None:intergenic 25.0%
! CTGATCGTAATAATATTAAC+AGG + chr3_3:82449375-82449394 Msa0477960:intron 25.0%
! TACTATGTAAAATAACAGCT+AGG - chr3_3:82449956-82449975 None:intergenic 25.0%
! TATAGTGATTAGAATGATAG+GGG - chr3_3:82450142-82450161 None:intergenic 25.0%
! TACAAAGTTGACAAAAAAAG+CGG - chr3_3:82450183-82450202 None:intergenic 25.0%
! CAAATGAAAAAAAAAGTGGT+TGG - chr3_3:82450209-82450228 None:intergenic 25.0%
!!! CAACCACTTTTTTTTTCATT+TGG + chr3_3:82450207-82450226 Msa0477960:intron 25.0%
!!! TTTTCATTTGGTTTATGACT+TGG + chr3_3:82450219-82450238 Msa0477960:intron 25.0%
! AATATGAATCTGCTAGATAT+AGG - chr3_3:82450381-82450400 None:intergenic 25.0%
! ATATCTAGCAGATTCATATT+AGG + chr3_3:82450381-82450400 Msa0477960:intron 25.0%
! ATCAGGATTCAATTATGAAT+CGG - chr3_3:82450437-82450456 None:intergenic 25.0%
! TAAATAAGCCTAGGAAATAA+AGG - chr3_3:82450581-82450600 None:intergenic 25.0%
!! AAGACATTTTAAATAAGCCT+AGG - chr3_3:82450590-82450609 None:intergenic 25.0%
! CAGAAAATCTTAAGATTATG+TGG + chr3_3:82450741-82450760 Msa0477960:intron 25.0%
! CTGAATCATGTTTATTGTAA+TGG + chr3_3:82450769-82450788 Msa0477960:intron 25.0%
!!! ACACATCCTTTTAAGTTTTA+AGG - chr3_3:82450836-82450855 None:intergenic 25.0%
!!! TTTTGTTTGCTCCTTTAAAT+TGG - chr3_3:82450912-82450931 None:intergenic 25.0%
!! AAAGACATAAAGCTTTATGA+TGG + chr3_3:82451168-82451187 Msa0477960:CDS 25.0%
! GCATTTGAAAATGTCAATAA+CGG + chr3_3:82451277-82451296 Msa0477960:exon 25.0%
! TGAATGTACAAATTTCTCAA+TGG - chr3_3:82451504-82451523 None:intergenic 25.0%
! GGATTTATTATCAGGATTTA+GGG - chr3_3:82451557-82451576 None:intergenic 25.0%
! ATATTGTGGGATTTATTATC+AGG - chr3_3:82451565-82451584 None:intergenic 25.0%
GTTAGTGTATGTTTGTGAAT+AGG - chr3_3:82447394-82447413 None:intergenic 30.0%
ACCGTTAGATCATCAATAAA+CGG + chr3_3:82447412-82447431 Msa0477960:five_prime_UTR 30.0%
! TCCGTTTATTGATGATCTAA+CGG - chr3_3:82447416-82447435 None:intergenic 30.0%
! CTTTGAGAAGAGGAATTATA+CGG - chr3_3:82447675-82447694 None:intergenic 30.0%
! TGGAATACTTCGATTTTCTA+TGG + chr3_3:82447901-82447920 Msa0477960:CDS 30.0%
!!! AGGGTTTTGGTTTAGATTTT+TGG + chr3_3:82448112-82448131 Msa0477960:intron 30.0%
!!! GTTTTGGTTTAGATTTTTGG+TGG + chr3_3:82448115-82448134 Msa0477960:intron 30.0%
CATACTTCAAAACCAAATTG+TGG - chr3_3:82448373-82448392 None:intergenic 30.0%
TATTTGTCTCTTTAGTCTCT+AGG + chr3_3:82448405-82448424 Msa0477960:intron 30.0%
ATAAAAATGGCGTACTGTAT+TGG + chr3_3:82448462-82448481 Msa0477960:intron 30.0%
!! GAGATTTTAATCGAGGATTT+GGG - chr3_3:82448538-82448557 None:intergenic 30.0%
!! AAAAAGGGAGATTTTAATCG+AGG - chr3_3:82448545-82448564 None:intergenic 30.0%
ACCCAAATAAAAGCAAGAAA+GGG - chr3_3:82448644-82448663 None:intergenic 30.0%
AACCCAAATAAAAGCAAGAA+AGG - chr3_3:82448645-82448664 None:intergenic 30.0%
! ATTTTCGCTTATGTTCTTTC+AGG + chr3_3:82448712-82448731 Msa0477960:intron 30.0%
! TTTTCGCTTATGTTCTTTCA+GGG + chr3_3:82448713-82448732 Msa0477960:intron 30.0%
GGTATTATGATCATCATTCA+TGG + chr3_3:82448735-82448754 Msa0477960:CDS 30.0%
!!! TTTTTTTAGCTTTTGTTGGG+GGG + chr3_3:82448879-82448898 Msa0477960:intron 30.0%
CTTGGAATGAAAAGAACTTT+AGG + chr3_3:82449290-82449309 Msa0477960:intron 30.0%
! TTTCTGCATTTTTATGTAGG+CGG + chr3_3:82449558-82449577 Msa0477960:intron 30.0%
GACATTAACAGTTGAAAAGA+AGG - chr3_3:82449823-82449842 None:intergenic 30.0%
TTATTTGCATTTGACAGTCA+GGG - chr3_3:82449849-82449868 None:intergenic 30.0%
TTTATTTGCATTTGACAGTC+AGG - chr3_3:82449850-82449869 None:intergenic 30.0%
TCTCTAGTGTGTATCTTTAT+TGG + chr3_3:82450097-82450116 Msa0477960:intron 30.0%
TAGATGATATATGAGCTTGT+AGG + chr3_3:82450265-82450284 Msa0477960:intron 30.0%
TTCATATTAGGATTCGATTC+AGG + chr3_3:82450393-82450412 Msa0477960:intron 30.0%
TATGAGCCTAAATATGAGAA+GGG - chr3_3:82450646-82450665 None:intergenic 30.0%
TGATCAATGCTTAAATGGAA+AGG - chr3_3:82450672-82450691 None:intergenic 30.0%
AAGCATGATCAATGCTTAAA+TGG - chr3_3:82450677-82450696 None:intergenic 30.0%
ATCATGCTTTCTTTGATGAA+GGG + chr3_3:82450688-82450707 Msa0477960:intron 30.0%
AAAGGACAAAGTACATTCAA+AGG - chr3_3:82450800-82450819 None:intergenic 30.0%
TTCCTGCCTTAAAACTTAAA+AGG + chr3_3:82450827-82450846 Msa0477960:intron 30.0%
!!! ATCCTTTTAAGTTTTAAGGC+AGG - chr3_3:82450832-82450851 None:intergenic 30.0%
TTTAAAGGAGCAAACAAAAG+AGG + chr3_3:82450913-82450932 Msa0477960:CDS 30.0%
ATGATATTCGCAGTATTTCA+TGG - chr3_3:82451026-82451045 None:intergenic 30.0%
TGATAAAGTAACTGATCCAT+TGG + chr3_3:82451107-82451126 Msa0477960:CDS 30.0%
TATAAATCTTGTGAAGCCAA+TGG - chr3_3:82451126-82451145 None:intergenic 30.0%
! TTGAAAATGTCAATAACGGA+AGG + chr3_3:82451281-82451300 Msa0477960:exon 30.0%
! AACTTTGGTAGTTAGAAAGT+TGG - chr3_3:82451344-82451363 None:intergenic 30.0%
AACTTTCTAACTACCAAAGT+TGG + chr3_3:82451343-82451362 Msa0477960:three_prime_UTR 30.0%
! TAAATTTCAGTGATTTTCCG+TGG + chr3_3:82451531-82451550 Msa0477960:three_prime_UTR 30.0%
GGGATTTATTATCAGGATTT+AGG - chr3_3:82451558-82451577 None:intergenic 30.0%
CATACTACACGATATATTGT+GGG - chr3_3:82451578-82451597 None:intergenic 30.0%
ACATACTACACGATATATTG+TGG - chr3_3:82451579-82451598 None:intergenic 30.0%
TGTATGTTTGTGAATAGGCA+TGG - chr3_3:82447389-82447408 None:intergenic 35.0%
CTTCTCTTCAAATTCTTCCT+CGG - chr3_3:82447793-82447812 None:intergenic 35.0%
! AGAAAATCGAAGTATTCCAC+CGG - chr3_3:82447900-82447919 None:intergenic 35.0%
TACTTAAGATCACCGTAAAC+CGG - chr3_3:82447964-82447983 None:intergenic 35.0%
GTTTACGGTGATCTTAAGTA+AGG + chr3_3:82447964-82447983 Msa0477960:intron 35.0%
AAGCTTCATAGTGTGAAAAG+AGG + chr3_3:82448092-82448111 Msa0477960:intron 35.0%
AGCTTCATAGTGTGAAAAGA+GGG + chr3_3:82448093-82448112 Msa0477960:intron 35.0%
! ATAGTGTGAAAAGAGGGTTT+TGG + chr3_3:82448099-82448118 Msa0477960:intron 35.0%
AGGAAAATTTAGAAACTGGG+TGG + chr3_3:82448226-82448245 Msa0477960:intron 35.0%
TCAAAACCAAATTGTGGAGA+TGG - chr3_3:82448367-82448386 None:intergenic 35.0%
!! TTGTACTGAAGAGTGTTAGA+TGG + chr3_3:82448512-82448531 Msa0477960:intron 35.0%
!! GGAGATTTTAATCGAGGATT+TGG - chr3_3:82448539-82448558 None:intergenic 35.0%
GATAGAAAACTCTTGCCTAT+TGG + chr3_3:82448615-82448634 Msa0477960:intron 35.0%
!! AGCCCTTTCTTGCTTTTATT+TGG + chr3_3:82448639-82448658 Msa0477960:intron 35.0%
!! GCCCTTTCTTGCTTTTATTT+GGG + chr3_3:82448640-82448659 Msa0477960:intron 35.0%
TTCTATTCCATACAGTTGTG+CGG + chr3_3:82448663-82448682 Msa0477960:intron 35.0%
! TGCGGCTCTTTTTAAACATT+TGG + chr3_3:82448681-82448700 Msa0477960:intron 35.0%
TTTCGCTTATGTTCTTTCAG+GGG + chr3_3:82448714-82448733 Msa0477960:intron 35.0%
! TCAATAGTTGTTACTTGCTG+TGG + chr3_3:82448814-82448833 Msa0477960:intron 35.0%
!! CAATAGTTGTTACTTGCTGT+GGG + chr3_3:82448815-82448834 Msa0477960:intron 35.0%
!! ATGAGTACTGAGTCAGAATT+GGG - chr3_3:82448984-82449003 None:intergenic 35.0%
!! AATGAGTACTGAGTCAGAAT+TGG - chr3_3:82448985-82449004 None:intergenic 35.0%
!! ACTCAGTACTCATTTTTCAG+CGG + chr3_3:82448991-82449010 Msa0477960:intron 35.0%
CAGTTAACATTGTGCAACTT+TGG + chr3_3:82449036-82449055 Msa0477960:CDS 35.0%
!! TGTTTTATTGCTACAGGTCA+TGG + chr3_3:82449161-82449180 Msa0477960:intron 35.0%
ATATTAACAGGGAGCTTTCT+TGG + chr3_3:82449387-82449406 Msa0477960:intron 35.0%
AAGATTAGATCAGAGAATCC+TGG + chr3_3:82449412-82449431 Msa0477960:CDS 35.0%
TAACAGTTGAAAAGAAGGCA+GGG - chr3_3:82449818-82449837 None:intergenic 35.0%
TTAACAGTTGAAAAGAAGGC+AGG - chr3_3:82449819-82449838 None:intergenic 35.0%
TGTGTCGTAGTATCTTGATT+TGG + chr3_3:82450047-82450066 Msa0477960:intron 35.0%
TGGTACAAAACTGAACTCAA+TGG + chr3_3:82450067-82450086 Msa0477960:intron 35.0%
AAGTTGACAAAAAAAGCGGT+TGG - chr3_3:82450179-82450198 None:intergenic 35.0%
TTACACTGAGTGGTTAAATC+AGG - chr3_3:82450454-82450473 None:intergenic 35.0%
!! AAATAAGAGCACTAGATGCA+GGG - chr3_3:82450525-82450544 None:intergenic 35.0%
!! TGCTCTTATTTCTGATCTGT+TGG + chr3_3:82450534-82450553 Msa0477960:intron 35.0%
GTATGAGCCTAAATATGAGA+AGG - chr3_3:82450647-82450666 None:intergenic 35.0%
TCAATGCTTAAATGGAAAGG+AGG - chr3_3:82450669-82450688 None:intergenic 35.0%
GATCATGCTTTCTTTGATGA+AGG + chr3_3:82450687-82450706 Msa0477960:intron 35.0%
TAAGGCAGGAATAAGCAAAA+AGG - chr3_3:82450818-82450837 None:intergenic 35.0%
! TGTTGCTCCAATATTTTCTC+TGG + chr3_3:82450873-82450892 Msa0477960:CDS 35.0%
ATTGTGTGTAGGGATTGTAT+TGG + chr3_3:82451475-82451494 Msa0477960:three_prime_UTR 35.0%
GAGAAATTTGTACATTCAGC+TGG + chr3_3:82451506-82451525 Msa0477960:three_prime_UTR 35.0%
TTGTGAATAGGCATGGCAAT+GGG - chr3_3:82447382-82447401 None:intergenic 40.0%
TTTGTGAATAGGCATGGCAA+TGG - chr3_3:82447383-82447402 None:intergenic 40.0%
AAGAGGAATTATACGGTTGC+TGG - chr3_3:82447668-82447687 None:intergenic 40.0%
GAACGAACAAGAGAAAAGAG+AGG - chr3_3:82447735-82447754 None:intergenic 40.0%
AAATTCTTCCTCGGAGAAGA+CGG - chr3_3:82447784-82447803 None:intergenic 40.0%
CGAGGAAGAATTTGAAGAGA+AGG + chr3_3:82447791-82447810 Msa0477960:CDS 40.0%
GGAAGAATTTGAAGAGAAGG+TGG + chr3_3:82447794-82447813 Msa0477960:CDS 40.0%
GAATTTGAAGAGAAGGTGGT+TGG + chr3_3:82447798-82447817 Msa0477960:CDS 40.0%
!!! ATGCTTTGTTTTGTCGCTCT+TGG + chr3_3:82447935-82447954 Msa0477960:CDS 40.0%
ACTTAAGATCACCGTAAACC+GGG - chr3_3:82447963-82447982 None:intergenic 40.0%
AACTGGGTGGATCGAATTAT+TGG + chr3_3:82448239-82448258 Msa0477960:intron 40.0%
TTCATGGGCTTAATGAACAC+AGG + chr3_3:82448751-82448770 Msa0477960:CDS 40.0%
GAAGATATGCAGATTTCGCT+AGG + chr3_3:82449013-82449032 Msa0477960:CDS 40.0%
!! CAACTTTGGTGTCTATGCAA+TGG + chr3_3:82449050-82449069 Msa0477960:CDS 40.0%
CATATCATCATCTTTGCGTC+CGG + chr3_3:82449126-82449145 Msa0477960:intron 40.0%
TTTATTGCTACAGGTCATGG+AGG + chr3_3:82449164-82449183 Msa0477960:intron 40.0%
TGTTCCTTCTCTTGATCAAG+TGG + chr3_3:82449208-82449227 Msa0477960:CDS 40.0%
CGCATGGCGAAAACATTAAA+TGG - chr3_3:82449346-82449365 None:intergenic 40.0%
! AAGAGAAAGCATGGTATTCC+AGG - chr3_3:82449433-82449452 None:intergenic 40.0%
GGAATACCATGCTTTCTCTT+TGG + chr3_3:82449433-82449452 Msa0477960:CDS 40.0%
TTTCTCTTTGGTCACTCAAC+TGG + chr3_3:82449445-82449464 Msa0477960:CDS 40.0%
CTACCATCACTTCAATGTGA+GGG - chr3_3:82449591-82449610 None:intergenic 40.0%
TCTACCATCACTTCAATGTG+AGG - chr3_3:82449592-82449611 None:intergenic 40.0%
CACATTGAAGTGATGGTAGA+AGG + chr3_3:82449592-82449611 Msa0477960:CDS 40.0%
AAGCCATCTCATCCAATAGT+TGG + chr3_3:82449646-82449665 Msa0477960:CDS 40.0%
GCAAAACTTACGCCAACTAT+TGG - chr3_3:82449661-82449680 None:intergenic 40.0%
CAGTAGTATGATGTGAGCTT+TGG + chr3_3:82449871-82449890 Msa0477960:intron 40.0%
GATAAACCTGACTAGATCTG+AGG + chr3_3:82449978-82449997 Msa0477960:intron 40.0%
! CTGTTAGTTCTTATGCCCTT+AGG + chr3_3:82450352-82450371 Msa0477960:intron 40.0%
GCTAGATATAGGACTCCTAA+GGG - chr3_3:82450370-82450389 None:intergenic 40.0%
TGCTAGATATAGGACTCCTA+AGG - chr3_3:82450371-82450390 None:intergenic 40.0%
ATTTCTCAGCAGTACTTTCC+CGG + chr3_3:82450490-82450509 Msa0477960:intron 40.0%
!! AATAAGAGCACTAGATGCAG+GGG - chr3_3:82450524-82450543 None:intergenic 40.0%
!! GAAATAAGAGCACTAGATGC+AGG - chr3_3:82450526-82450545 None:intergenic 40.0%
GGCATGAATGATGCTAAAAC+CGG + chr3_3:82450555-82450574 Msa0477960:intron 40.0%
! AAAACCGGCCTTTATTTCCT+AGG + chr3_3:82450570-82450589 Msa0477960:intron 40.0%
TAAGCCTAGGAAATAAAGGC+CGG - chr3_3:82450577-82450596 None:intergenic 40.0%
CCTAAATATGAGAAGGGATG+TGG - chr3_3:82450640-82450659 None:intergenic 40.0%
CCACATCCCTTCTCATATTT+AGG + chr3_3:82450637-82450656 Msa0477960:intron 40.0%
GGAGCTACCAGAGAAAATAT+TGG - chr3_3:82450883-82450902 None:intergenic 40.0%
! TATTTTCTCTGGTAGCTCCA+AGG + chr3_3:82450884-82450903 Msa0477960:CDS 40.0%
GCTCCAAGGTTCCAATTTAA+AGG + chr3_3:82450898-82450917 Msa0477960:CDS 40.0%
GCTCCTTTAAATTGGAACCT+TGG - chr3_3:82450904-82450923 None:intergenic 40.0%
!! AAAGAGGCATTCCAGTTTCT+AGG + chr3_3:82450929-82450948 Msa0477960:CDS 40.0%
!! AAGAGGCATTCCAGTTTCTA+GGG + chr3_3:82450930-82450949 Msa0477960:CDS 40.0%
TAGCTCAGGACATTATCAAC+TGG + chr3_3:82451232-82451251 Msa0477960:CDS 40.0%
TCAGGACATTATCAACTGGA+TGG + chr3_3:82451236-82451255 Msa0477960:CDS 40.0%
AGAGAAGTCAGCACCAAAAA+AGG + chr3_3:82451309-82451328 Msa0477960:three_prime_UTR 40.0%
GAGAAGTCAGCACCAAAAAA+GGG + chr3_3:82451310-82451329 Msa0477960:three_prime_UTR 40.0%
AGAAGTCAGCACCAAAAAAG+GGG + chr3_3:82451311-82451330 Msa0477960:three_prime_UTR 40.0%
TTCTACACACTTGCCAACTT+TGG - chr3_3:82451359-82451378 None:intergenic 40.0%
! ATTATCAGGATTTAGGGCCA+CGG - chr3_3:82451551-82451570 None:intergenic 40.0%
AATAGGCATGGCAATGGGTA+CGG - chr3_3:82447377-82447396 None:intergenic 45.0%
TCGATGGAAGACATCGCTAA+CGG - chr3_3:82447616-82447635 None:intergenic 45.0%
TGTGTAGACGAAGATGAGAG+AGG - chr3_3:82447707-82447726 None:intergenic 45.0%
! TGAAGAGAAGGTGGTTGGTT+AGG + chr3_3:82447803-82447822 Msa0477960:CDS 45.0%
! GAAGAGAAGGTGGTTGGTTA+GGG + chr3_3:82447804-82447823 Msa0477960:CDS 45.0%
GGGAAGAAGAGGATACGTTT+AGG + chr3_3:82447824-82447843 Msa0477960:CDS 45.0%
! TACGTTTAGGAGAAGAGCGT+TGG + chr3_3:82447837-82447856 Msa0477960:CDS 45.0%
GTTGGAATGGGTCTTGATGA+TGG + chr3_3:82447868-82447887 Msa0477960:CDS 45.0%
!! GTCTTGATGATGGTTGTTGC+CGG + chr3_3:82447878-82447897 Msa0477960:CDS 45.0%
GGATCACCATCTCCACAATT+TGG + chr3_3:82448358-82448377 Msa0477960:intron 45.0%
!! GATTGATTTGCCTTTGCACG+AGG + chr3_3:82448588-82448607 Msa0477960:intron 45.0%
ATTTGCCTTTGCACGAGGAA+TGG + chr3_3:82448593-82448612 Msa0477960:intron 45.0%
TCTATCCATTCCTCGTGCAA+AGG - chr3_3:82448601-82448620 None:intergenic 45.0%
AAAAGAGCCGCACAACTGTA+TGG - chr3_3:82448673-82448692 None:intergenic 45.0%
! AGTACTGAGTCAGAATTGGG+TGG - chr3_3:82448981-82449000 None:intergenic 45.0%
! TTGGTGTCTATGCAATGGAC+TGG + chr3_3:82449055-82449074 Msa0477960:CDS 45.0%
!! GTCTATGCAATGGACTGGAT+AGG + chr3_3:82449060-82449079 Msa0477960:CDS 45.0%
GCAACCACTTGATCAAGAGA+AGG - chr3_3:82449215-82449234 None:intergenic 45.0%
GAGTGACCAAAGAGAAAGCA+TGG - chr3_3:82449442-82449461 None:intergenic 45.0%
TCTTTGGTCACTCAACTGGA+GGG + chr3_3:82449449-82449468 Msa0477960:CDS 45.0%
ACGCCAACTATTGGATGAGA+TGG - chr3_3:82449652-82449671 None:intergenic 45.0%
! GGCGTAAGTTTTGCACTTCT+TGG + chr3_3:82449667-82449686 Msa0477960:intron 45.0%
! TGTTGCTTCTGTGCTCAGTT+TGG + chr3_3:82449726-82449745 Msa0477960:intron 45.0%
AGGCAGGGATGTTTCTTTCA+TGG - chr3_3:82449803-82449822 None:intergenic 45.0%
CCACTCACATTTACACTGAG+TGG - chr3_3:82450464-82450483 None:intergenic 45.0%
CCACTCAGTGTAAATGTGAG+TGG + chr3_3:82450461-82450480 Msa0477960:intron 45.0%
! GATGTGTAACGTGTTGATGC+AGG + chr3_3:82450849-82450868 Msa0477960:intron 45.0%
TACTTTGCCAACAAAGCTGC+TGG - chr3_3:82450958-82450977 None:intergenic 45.0%
GGACCTATTAGAGTTCGAAC+TGG + chr3_3:82451000-82451019 Msa0477960:CDS 45.0%
TGGCCAGTTCGAACTCTAAT+AGG - chr3_3:82451006-82451025 None:intergenic 45.0%
GTACCATTCTTTGTCCTGCA+TGG + chr3_3:82451078-82451097 Msa0477960:CDS 45.0%
GTTCCATGCAGGACAAAGAA+TGG - chr3_3:82451084-82451103 None:intergenic 45.0%
CTTTATCAGCAGTTCCATGC+AGG - chr3_3:82451095-82451114 None:intergenic 45.0%
GAAGTCAGCACCAAAAAAGG+GGG + chr3_3:82451312-82451331 Msa0477960:three_prime_UTR 45.0%
AAGTCAGCACCAAAAAAGGG+GGG + chr3_3:82451313-82451332 Msa0477960:three_prime_UTR 45.0%
!! AATATTTATTTATATGTATT+GGG - chr3_3:82448916-82448935 None:intergenic 5.0%
!! AAATATTTATTTATATGTAT+TGG - chr3_3:82448917-82448936 None:intergenic 5.0%
!! ATATAAATAAATATTTCTTA+TGG + chr3_3:82448921-82448940 Msa0477960:intron 5.0%
!!! TAAAAATATCATATTTTTAT+TGG + chr3_3:82450312-82450331 Msa0477960:intron 5.0%
!!! ATTCATATTTTATTTTATTT+AGG + chr3_3:82451422-82451441 Msa0477960:three_prime_UTR 5.0%
ATAGGCATGGCAATGGGTAC+GGG - chr3_3:82447376-82447395 None:intergenic 50.0%
ATGGAAGACATCGCTAACGG+CGG - chr3_3:82447613-82447632 None:intergenic 50.0%
!! GCTCTGAACGCTTTGAGAAG+AGG - chr3_3:82447685-82447704 None:intergenic 50.0%
TCTTGTTCGTTCTCCCTCGT+CGG + chr3_3:82447743-82447762 Msa0477960:CDS 50.0%
! GTGGTTGGTTAGGGAAGAAG+AGG + chr3_3:82447813-82447832 Msa0477960:CDS 50.0%
TTGGCGCAGGATGTTGGAAT+GGG + chr3_3:82447856-82447875 Msa0477960:CDS 50.0%
!! TTGATGATGGTTGTTGCCGG+TGG + chr3_3:82447881-82447900 Msa0477960:CDS 50.0%
! GTTTTGTCGCTCTTGGTTCC+CGG + chr3_3:82447942-82447961 Msa0477960:CDS 50.0%
AGCAAGAAAGGGCTGCCAAT+AGG - chr3_3:82448633-82448652 None:intergenic 50.0%
! AGCTTTTGTTGGGGGGTCTT+CGG + chr3_3:82448886-82448905 Msa0477960:intron 50.0%
!! GGAGGTAGCGATGGATTACA+TGG + chr3_3:82449182-82449201 Msa0477960:CDS 50.0%
CGATCAGTATGCAAAGCGCA+TGG - chr3_3:82449362-82449381 None:intergenic 50.0%
CTCTTTGGTCACTCAACTGG+AGG + chr3_3:82449448-82449467 Msa0477960:CDS 50.0%
CTTTGGTCACTCAACTGGAG+GGG + chr3_3:82449450-82449469 Msa0477960:CDS 50.0%
ACGCCCTCACATTGAAGTGA+TGG + chr3_3:82449585-82449604 Msa0477960:CDS 50.0%
! CTGACTAGATCTGAGGCACT+CGG + chr3_3:82449985-82450004 Msa0477960:intron 50.0%
! TAGGGATCCAGCAGCTTTGT+TGG + chr3_3:82450948-82450967 Msa0477960:CDS 50.0%
! GGCAAAGTACTCTGATCCTC+TGG + chr3_3:82450969-82450988 Msa0477960:CDS 50.0%
TCTGATCCTCTGGTCTACAC+AGG + chr3_3:82450979-82450998 Msa0477960:CDS 50.0%
ATAGGTCCTGTGTAGACCAG+AGG - chr3_3:82450988-82451007 None:intergenic 50.0%
!! GCACGACCTTTTGTTTGAGC+CGG + chr3_3:82451197-82451216 Msa0477960:CDS 50.0%
TGAGCTATCTCTTCACGCTC+CGG - chr3_3:82451219-82451238 None:intergenic 50.0%
AGTCAGCACCAAAAAAGGGG+GGG + chr3_3:82451314-82451333 Msa0477960:three_prime_UTR 50.0%
TCGTTCTCCCTCGTCGGAAT+AGG + chr3_3:82447749-82447768 Msa0477960:CDS 55.0%
CGTTCTCCCTCGTCGGAATA+GGG + chr3_3:82447750-82447769 Msa0477960:CDS 55.0%
TTCTTCCTCGGAGAAGACGG+TGG - chr3_3:82447781-82447800 None:intergenic 55.0%
GTTGGCGCAGGATGTTGGAA+TGG + chr3_3:82447855-82447874 Msa0477960:CDS 55.0%
CGCTCTTGGTTCCCGGTTTA+CGG + chr3_3:82447949-82447968 Msa0477960:CDS 55.0%
! GCTTTTGTTGGGGGGTCTTC+GGG + chr3_3:82448887-82448906 Msa0477960:intron 55.0%
ACAGGTCATGGAGGTAGCGA+TGG + chr3_3:82449173-82449192 Msa0477960:intron 55.0%
GATGGCTTCACACGCAAAGC+TGG - chr3_3:82449634-82449653 None:intergenic 55.0%
CGAGTGCCTCAGATCTAGTC+AGG - chr3_3:82449987-82450006 None:intergenic 55.0%
GCTGCTGGATCCCTAGAAAC+TGG - chr3_3:82450943-82450962 None:intergenic 55.0%
CACGCTCCGGCTCAAACAAA+AGG - chr3_3:82451206-82451225 None:intergenic 55.0%
GGAGCGTGAAGAGATAGCTC+AGG + chr3_3:82451218-82451237 Msa0477960:CDS 55.0%
GTCAGCACCAAAAAAGGGGG+GGG + chr3_3:82451315-82451334 Msa0477960:three_prime_UTR 55.0%
!!! TTGGCAACCCCCCCCTTTTT+TGG - chr3_3:82451325-82451344 None:intergenic 55.0%
CATGGCAATGGGTACGGGTG+GGG - chr3_3:82447371-82447390 None:intergenic 60.0%
GCATGGCAATGGGTACGGGT+GGG - chr3_3:82447372-82447391 None:intergenic 60.0%
GAAGACATCGCTAACGGCGG+CGG - chr3_3:82447610-82447629 None:intergenic 60.0%
GTCTTCCATCGATGCGCCGA+TGG + chr3_3:82447624-82447643 Msa0477960:CDS 60.0%
GCCGATGGAGCCACTAACGT+CGG + chr3_3:82447639-82447658 Msa0477960:CDS 60.0%
CCCGACGTTAGTGGCTCCAT+CGG - chr3_3:82447643-82447662 None:intergenic 60.0%
CCGATGGAGCCACTAACGTC+GGG + chr3_3:82447640-82447659 Msa0477960:CDS 60.0%
TTGCTGGCACCCGACGTTAG+TGG - chr3_3:82447652-82447671 None:intergenic 60.0%
TCTCCCTCGTCGGAATAGGG+CGG + chr3_3:82447753-82447772 Msa0477960:CDS 60.0%
!! TAGGAGAAGAGCGTTGGCGC+AGG + chr3_3:82447843-82447862 Msa0477960:CDS 60.0%
!! AGAGCGTTGGCGCAGGATGT+TGG + chr3_3:82447850-82447869 Msa0477960:CDS 60.0%
TCACTCAACTGGAGGGGCTG+TGG + chr3_3:82449456-82449475 Msa0477960:CDS 60.0%
AGTGAAGTCGCCCCGAAGAG+TGG + chr3_3:82451379-82451398 Msa0477960:three_prime_UTR 60.0%
GTGAAGTCGCCCCGAAGAGT+GGG + chr3_3:82451380-82451399 Msa0477960:three_prime_UTR 60.0%
TGCTTCCGCCACCCACTCTT+CGG - chr3_3:82451394-82451413 None:intergenic 60.0%
!! AGTGGGTGGCGGAAGCAGAT+AGG + chr3_3:82451397-82451416 Msa0477960:three_prime_UTR 60.0%
CAATGGGTACGGGTGGGGAC+GGG - chr3_3:82447366-82447385 None:intergenic 65.0%
GCAATGGGTACGGGTGGGGA+CGG - chr3_3:82447367-82447386 None:intergenic 65.0%
GGCATGGCAATGGGTACGGG+TGG - chr3_3:82447373-82447392 None:intergenic 65.0%
!! AGTGGCGGTGGCGGAAGAAG+CGG - chr3_3:82447570-82447589 None:intergenic 65.0%
!! GTGGTGGCGGAGGAAAGTGG+CGG - chr3_3:82447585-82447604 None:intergenic 65.0%
TGGCTCCATCGGCGCATCGA+TGG - chr3_3:82447632-82447651 None:intergenic 65.0%
GAGCCGCCCTATTCCGACGA+GGG - chr3_3:82447759-82447778 None:intergenic 65.0%
AGATGCAGGGGACGCGATGC+CGG - chr3_3:82450512-82450531 None:intergenic 65.0%
AAGTCGCCCCGAAGAGTGGG+TGG + chr3_3:82451383-82451402 Msa0477960:three_prime_UTR 65.0%
CTTCCGCCACCCACTCTTCG+GGG - chr3_3:82451392-82451411 None:intergenic 65.0%
GCTTCCGCCACCCACTCTTC+GGG - chr3_3:82451393-82451412 None:intergenic 65.0%
GCGGAGGAAAGTGGCGGTGG+CGG - chr3_3:82447579-82447598 None:intergenic 70.0%
! GTGGCGGAGGAAAGTGGCGG+TGG - chr3_3:82447582-82447601 None:intergenic 70.0%
!! GCGGTGGTGGCGGAGGAAAG+TGG - chr3_3:82447588-82447607 None:intergenic 70.0%
GACATCGCTAACGGCGGCGG+CGG - chr3_3:82447607-82447626 None:intergenic 70.0%
GGAGCCGCCCTATTCCGACG+AGG - chr3_3:82447760-82447779 None:intergenic 70.0%
CGGCTCCACCGTCTTCTCCG+AGG + chr3_3:82447773-82447792 Msa0477960:CDS 70.0%
GATGCAGGGGACGCGATGCC+GGG - chr3_3:82450511-82450530 None:intergenic 70.0%
TCGCCCCGAAGAGTGGGTGG+CGG + chr3_3:82451386-82451405 Msa0477960:three_prime_UTR 70.0%
ATCGCTAACGGCGGCGGCGG+TGG - chr3_3:82447604-82447623 None:intergenic 75.0%
!! AACGGCGGCGGCGGTGGTGG+CGG - chr3_3:82447598-82447617 None:intergenic 80.0%
! GCTAACGGCGGCGGCGGTGG+TGG - chr3_3:82447601-82447620 None:intergenic 80.0%
!!! GGCGGCGGCGGTGGTGGCGG+AGG - chr3_3:82447595-82447614 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 82447350 82451661 82447350 ID=Msa0477960;Name=Msa0477960
chr3_3 mRNA 82447350 82451661 82447350 ID=Msa0477960-mRNA-1;Parent=Msa0477960;Name=Msa0477960-mRNA-1;_AED=0.14;_eAED=0.14;_QI=272|1|1|1|1|1|7|377|376
chr3_3 exon 82447350 82447980 82447350 ID=Msa0477960-mRNA-1:exon:22931;Parent=Msa0477960-mRNA-1
chr3_3 exon 82448734 82448772 82448734 ID=Msa0477960-mRNA-1:exon:22932;Parent=Msa0477960-mRNA-1
chr3_3 exon 82449011 82449081 82449011 ID=Msa0477960-mRNA-1:exon:22933;Parent=Msa0477960-mRNA-1
chr3_3 exon 82449177 82449241 82449177 ID=Msa0477960-mRNA-1:exon:22934;Parent=Msa0477960-mRNA-1
chr3_3 exon 82449397 82449486 82449397 ID=Msa0477960-mRNA-1:exon:22935;Parent=Msa0477960-mRNA-1
chr3_3 exon 82449577 82449669 82449577 ID=Msa0477960-mRNA-1:exon:22936;Parent=Msa0477960-mRNA-1
chr3_3 exon 82450871 82451661 82450871 ID=Msa0477960-mRNA-1:exon:22937;Parent=Msa0477960-mRNA-1
chr3_3 five_prime_UTR 82447350 82447621 82447350 ID=Msa0477960-mRNA-1:five_prime_utr;Parent=Msa0477960-mRNA-1
chr3_3 CDS 82447622 82447980 82447622 ID=Msa0477960-mRNA-1:cds;Parent=Msa0477960-mRNA-1
chr3_3 CDS 82448734 82448772 82448734 ID=Msa0477960-mRNA-1:cds;Parent=Msa0477960-mRNA-1
chr3_3 CDS 82449011 82449081 82449011 ID=Msa0477960-mRNA-1:cds;Parent=Msa0477960-mRNA-1
chr3_3 CDS 82449177 82449241 82449177 ID=Msa0477960-mRNA-1:cds;Parent=Msa0477960-mRNA-1
chr3_3 CDS 82449397 82449486 82449397 ID=Msa0477960-mRNA-1:cds;Parent=Msa0477960-mRNA-1
chr3_3 CDS 82449577 82449669 82449577 ID=Msa0477960-mRNA-1:cds;Parent=Msa0477960-mRNA-1
chr3_3 CDS 82450871 82451284 82450871 ID=Msa0477960-mRNA-1:cds;Parent=Msa0477960-mRNA-1
chr3_3 three_prime_UTR 82451285 82451661 82451285 ID=Msa0477960-mRNA-1:three_prime_utr;Parent=Msa0477960-mRNA-1
Gene Sequence

>Msa0477960

ATGTCTTCCATCGATGCGCCGATGGAGCCACTAACGTCGGGTGCCAGCAACCGTATAATTCCTCTTCTCAAAGCGTTCAGAGCCTCTCTCATCTTCGTCTACACATTCTTCCTCTCTTTTCTCTTGTTCGTTCTCCCTCGTCGGAATAGGGCGGCTCCACCGTCTTCTCCGAGGAAGAATTTGAAGAGAAGGTGGTTGGTTAGGGAAGAAGAGGATACGTTTAGGAGAAGAGCGTTGGCGCAGGATGTTGGAATGGGTCTTGATGATGGTTGTTGCCGGTGGAATACTTCGATTTTCTATGGTGTTAGAAATAATGCTTTGTTTTGTCGCTCTTGGTTCCCGGTTTACGGTGATCTTAAGGGTATTATGATCATCATTCATGGGCTTAATGAACACAGCGGAAGATATGCAGATTTCGCTAGGCAGTTAACATTGTGCAACTTTGGTGTCTATGCAATGGACTGGATAGGTCATGGAGGTAGCGATGGATTACATGGTTATGTTCCTTCTCTTGATCAAGTGGTTGCAGACACAGGAGCTTTCTTGGAAAAGATTAGATCAGAGAATCCTGGAATACCATGCTTTCTCTTTGGTCACTCAACTGGAGGGGCTGTGGTTTTGAAAGCGGCATCACGCCCTCACATTGAAGTGATGGTAGAAGGAATCATTTTAACATCACCAGCTTTGCGTGTGAAGCCATCTCATCCAATAGTTGGCGCTGTTGCTCCAATATTTTCTCTGGTAGCTCCAAGGTTCCAATTTAAAGGAGCAAACAAAAGAGGCATTCCAGTTTCTAGGGATCCAGCAGCTTTGTTGGCAAAGTACTCTGATCCTCTGGTCTACACAGGACCTATTAGAGTTCGAACTGGCCATGAAATACTGCGAATATCATCATACTTAATGCGAAACTTCAAGTCTGTGACAGTACCATTCTTTGTCCTGCATGGAACTGCTGATAAAGTAACTGATCCATTGGCTTCACAAGATTTATACAATAAGGCAGCTTCTGAGTTCAAAGACATAAAGCTTTATGATGGTTTCTTGCACGACCTTTTGTTTGAGCCGGAGCGTGAAGAGATAGCTCAGGACATTATCAACTGGATGGAAAACAGATTATTTACTAGCATTTGA
Protein sequence

>Msa0477960

MSSIDAPMEPLTSGASNRIIPLLKAFRASLIFVYTFFLSFLLFVLPRRNRAAPPSSPRKNLKRRWLVREEEDTFRRRALAQDVGMGLDDGCCRWNTSIFYGVRNNALFCRSWFPVYGDLKGIMIIIHGLNEHSGRYADFARQLTLCNFGVYAMDWIGHGGSDGLHGYVPSLDQVVADTGAFLEKIRSENPGIPCFLFGHSTGGAVVLKAASRPHIEVMVEGIILTSPALRVKPSHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLMRNFKSVTVPFFVLHGTADKVTDPLASQDLYNKAASEFKDIKLYDGFLHDLLFEPEREEIAQDIINWMENRLFTSI*