AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0522020

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522020 MtrunA17_Chr3g0140391 99.202 376 3 0 1 376 1 376 0.0 767
Msa0522020 MtrunA17_Chr6g0479331 54.485 301 137 0 72 372 91 391 1.95e-115 341
Msa0522020 MtrunA17_Chr1g0209741 35.587 281 165 9 103 371 101 377 1.11e-46 163
Msa0522020 MtrunA17_Chr6g0457581 32.530 332 200 10 60 371 10 337 3.50e-45 158
Msa0522020 MtrunA17_Chr6g0460121 35.507 276 163 7 107 371 29 300 4.35e-45 157
Msa0522020 MtrunA17_Chr4g0047891 34.694 294 162 11 97 371 41 323 3.37e-40 145
Msa0522020 MtrunA17_Chr4g0071671 32.986 288 181 7 95 372 30 315 7.08e-40 144
Msa0522020 MtrunA17_Chr7g0215451 31.429 315 192 9 75 370 28 337 2.75e-35 132
Msa0522020 MtrunA17_Chr5g0423541 31.071 280 179 8 103 371 115 391 7.83e-35 132
Msa0522020 MtrunA17_Chr1g0195501 32.857 280 173 8 103 371 16 291 3.11e-34 129
Msa0522020 MtrunA17_Chr1g0212901 31.488 289 185 8 93 371 8 293 6.01e-34 128
Msa0522020 MtrunA17_Chr7g0269371 29.514 288 189 8 93 370 6 289 6.68e-34 128
Msa0522020 MtrunA17_Chr1g0199771 31.469 286 164 10 103 368 39 312 2.50e-30 118
Msa0522020 MtrunA17_Chr6g0484431 40.741 108 61 2 103 207 66 173 3.82e-18 84.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0522020 AT5G11650.1 72.513 382 92 4 1 372 1 379 0.0 525
Msa0522020 AT5G11650.2 68.874 302 81 4 1 292 1 299 6.03e-132 380
Msa0522020 AT1G73480.1 56.386 321 134 2 52 372 149 463 1.18e-127 375
Msa0522020 AT1G18360.1 55.247 324 131 4 54 372 68 382 2.78e-124 363
Msa0522020 AT1G52760.1 33.333 288 180 7 95 372 39 324 8.97e-43 152
Msa0522020 AT2G39420.1 34.364 291 176 8 93 372 9 295 6.73e-42 149
Msa0522020 AT2G39410.2 33.557 298 183 8 85 371 1 294 2.02e-41 148
Msa0522020 AT1G11090.1 32.515 326 177 14 65 371 13 314 3.77e-40 145
Msa0522020 AT5G16120.2 30.725 345 215 10 47 370 15 356 6.21e-39 143
Msa0522020 AT5G16120.4 30.725 345 215 10 47 370 29 370 7.87e-39 143
Msa0522020 AT5G16120.3 30.514 331 208 9 59 370 11 338 5.66e-38 140
Msa0522020 AT5G16120.1 30.514 331 208 9 59 370 11 338 5.66e-38 140
Msa0522020 AT2G39400.1 34.050 279 171 6 103 371 13 288 7.73e-38 138
Msa0522020 AT1G77420.1 32.394 284 172 9 103 372 102 379 2.23e-34 131
Msa0522020 AT3G55180.1 35.106 282 165 11 103 371 13 289 1.87e-33 127
Msa0522020 AT3G55190.1 32.215 298 186 10 89 374 5 298 9.80e-33 125
Msa0522020 AT5G14980.1 27.500 280 180 7 107 371 44 315 1.92e-29 116
Msa0522020 AT2G47630.1 32.042 284 176 9 102 371 13 293 4.33e-29 115
Msa0522020 AT3G62860.1 30.108 279 181 8 103 371 17 291 9.32e-29 115
Msa0522020 AT2G47630.2 33.054 239 148 6 142 371 13 248 5.02e-27 109
Msa0522020 AT3G62860.2 32.218 239 150 6 142 371 13 248 5.62e-27 109
Msa0522020 AT2G47630.3 33.054 239 148 6 142 371 33 268 6.09e-27 109
Msa0522020 AT5G19290.1 28.621 290 173 11 103 371 40 316 1.14e-25 106
Msa0522020 AT2G39400.2 30.233 215 138 6 103 309 13 223 1.83e-19 87.0

Find 138 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGATTTATTATCAGGATTT+AGG 0.126422 3_4:-75079400 None:intergenic
CGCTCTTGGTTCCCGGTTTA+CGG 0.245680 3_4:+75075672 Msa0522020:CDS
ATATTAACAGGGAGCTTTCT+TGG 0.251583 3_4:+75077232 Msa0522020:intron
TCGTTCTCCCTCGTCGGAAT+AGG 0.253325 3_4:+75075472 Msa0522020:CDS
ATATTGTGGGATTTATTATC+AGG 0.282886 3_4:-75079407 None:intergenic
TGAAGAGAAGGTGGTTGGTT+AGG 0.292925 3_4:+75075526 Msa0522020:CDS
AAAGAGGCATTCCAGTTTCT+AGG 0.295461 3_4:+75078773 Msa0522020:CDS
GCTCCAAGGTTCCAATTTAA+AGG 0.300871 3_4:+75078742 Msa0522020:CDS
TTCACAAGATTTATACAATA+AGG 0.302609 3_4:+75078975 Msa0522020:CDS
GGATTTATTATCAGGATTTA+GGG 0.306373 3_4:-75079399 None:intergenic
TGCTTCCGCCACCCACTCTT+CGG 0.306651 3_4:-75079236 None:intergenic
GCTTCCGCCACCCACTCTTC+GGG 0.308444 3_4:-75079235 None:intergenic
GGAATACCATGCTTTCTCTT+TGG 0.330795 3_4:+75077278 Msa0522020:CDS
ATGATATTCGCAGTATTTCA+TGG 0.338631 3_4:-75078867 None:intergenic
CGTTCTCCCTCGTCGGAATA+GGG 0.345845 3_4:+75075473 Msa0522020:CDS
GGGAAGAAGAGGATACGTTT+AGG 0.352429 3_4:+75075547 Msa0522020:CDS
GAAGAGAAGGTGGTTGGTTA+GGG 0.360796 3_4:+75075527 Msa0522020:CDS
ATCGCTAACGGCGGCGGCGG+TGG 0.362981 3_4:-75075324 None:intergenic
GGCGGCGGCGGTGGTGGCGG+AGG 0.364066 3_4:-75075315 None:intergenic
GCAAAACTTACGCCAACTAT+TGG 0.365315 3_4:-75077503 None:intergenic
TTTCTCTTTGGTCACTCAAC+TGG 0.369424 3_4:+75077290 Msa0522020:CDS
CTTTGAGAAGAGGAATTATA+CGG 0.370807 3_4:-75075395 None:intergenic
AAGAGAAAGCATGGTATTCC+AGG 0.371380 3_4:-75077275 None:intergenic
GCATTTGAAAATGTCAATAA+TGG 0.372165 3_4:+75079121 Msa0522020:exon
GCTAACGGCGGCGGCGGTGG+TGG 0.384604 3_4:-75075321 None:intergenic
TGGCCAGTTCGAACTCTAAT+AGG 0.393321 3_4:-75078847 None:intergenic
GCTGCTGGATCCCTAGAAAC+TGG 0.395115 3_4:-75078784 None:intergenic
TAAATTATATATTGTGTGTA+GGG 0.395581 3_4:+75079310 Msa0522020:three_prime_UTR
CTCTTTGGTCACTCAACTGG+AGG 0.400550 3_4:+75077293 Msa0522020:CDS
TAGGGATCCAGCAGCTTTGT+TGG 0.405367 3_4:+75078792 Msa0522020:CDS
CACATTGAAGTGATGGTAGA+AGG 0.405601 3_4:+75077437 Msa0522020:CDS
GCGGTGGTGGCGGAGGAAAG+TGG 0.413984 3_4:-75075308 None:intergenic
GTCTTGATGATGGTTGTTGC+CGG 0.415404 3_4:+75075601 Msa0522020:CDS
AACGGCGGCGGCGGTGGTGG+CGG 0.419356 3_4:-75075318 None:intergenic
GAGAAATTTGTACATTCAGC+TGG 0.422724 3_4:+75079351 Msa0522020:three_prime_UTR
AAGAGGAATTATACGGTTGC+TGG 0.429463 3_4:-75075388 None:intergenic
TACTTAAGATCACCGTAAAC+CGG 0.431025 3_4:-75075684 None:intergenic
GCGGAGGAAAGTGGCGGTGG+CGG 0.434146 3_4:-75075299 None:intergenic
GTGGCGGAGGAAAGTGGCGG+TGG 0.435667 3_4:-75075302 None:intergenic
TCACTCAACTGGAGGGGCTG+TGG 0.448260 3_4:+75077301 Msa0522020:CDS
GGCAAAGTACTCTGATCCTC+TGG 0.452619 3_4:+75078813 Msa0522020:CDS
ACCGTTAGATCATCAATAAA+CGG 0.453579 3_4:+75075135 Msa0522020:five_prime_UTR
TCTTGTTCGTTCTCCCTCGT+CGG 0.453724 3_4:+75075466 Msa0522020:CDS
TTCTACACACTTGCCAACTT+TGG 0.457166 3_4:-75079201 None:intergenic
GCTCCTTTAAATTGGAACCT+TGG 0.458257 3_4:-75078745 None:intergenic
CTTCTCTTCAAATTCTTCCT+CGG 0.459294 3_4:-75075513 None:intergenic
GGAGCTACCAGAGAAAATAT+TGG 0.459523 3_4:-75078724 None:intergenic
AACTTTCTAACTACCAAAGT+TGG 0.459746 3_4:+75079188 Msa0522020:three_prime_UTR
TACTTTGCCAACAAAGCTGC+TGG 0.462234 3_4:-75078799 None:intergenic
AAAGACATAAAGCTTTATGA+TGG 0.463555 3_4:+75079012 Msa0522020:CDS
CAGTTAACATTGTGCAACTT+TGG 0.464279 3_4:+75076881 Msa0522020:CDS
TTAAATTATATATTGTGTGT+AGG 0.465601 3_4:+75079309 Msa0522020:three_prime_UTR
TTGCTGGCACCCGACGTTAG+TGG 0.473238 3_4:-75075372 None:intergenic
CACGCTCCGGCTCAAACAAA+AGG 0.473659 3_4:-75079047 None:intergenic
GACATCGCTAACGGCGGCGG+CGG 0.474563 3_4:-75075327 None:intergenic
TGTTCCTTCTCTTGATCAAG+TGG 0.475105 3_4:+75077053 Msa0522020:CDS
GTTGGAATGGGTCTTGATGA+TGG 0.478644 3_4:+75075591 Msa0522020:CDS
AACTTTGGTAGTTAGAAAGT+TGG 0.486077 3_4:-75079186 None:intergenic
AGAGCGTTGGCGCAGGATGT+TGG 0.496334 3_4:+75075573 Msa0522020:CDS
TCTTTGGTCACTCAACTGGA+GGG 0.497603 3_4:+75077294 Msa0522020:CDS
TAGCTCAGGACATTATCAAC+TGG 0.499576 3_4:+75079076 Msa0522020:CDS
TTGGCGCAGGATGTTGGAAT+GGG 0.501149 3_4:+75075579 Msa0522020:CDS
AAGATTAGATCAGAGAATCC+TGG 0.506314 3_4:+75077257 Msa0522020:CDS
GTTGGCGCAGGATGTTGGAA+TGG 0.506491 3_4:+75075578 Msa0522020:CDS
AGTGGGTGGCGGAAGCAGAT+AGG 0.506924 3_4:+75079242 Msa0522020:three_prime_UTR
GTGGTTGGTTAGGGAAGAAG+AGG 0.510352 3_4:+75075536 Msa0522020:CDS
ACATACTACACGATATATTG+TGG 0.511571 3_4:-75079421 None:intergenic
GAAGACATCGCTAACGGCGG+CGG 0.512381 3_4:-75075330 None:intergenic
CTTTATCAGCAGTTCCATGC+AGG 0.512579 3_4:-75078936 None:intergenic
AAGCCATCTCATCCAATAGT+TGG 0.515260 3_4:+75077491 Msa0522020:CDS
TCCGTTTATTGATGATCTAA+CGG 0.517013 3_4:-75075136 None:intergenic
CTTTGGTCACTCAACTGGAG+GGG 0.520149 3_4:+75077295 Msa0522020:CDS
GAATTTGAAGAGAAGGTGGT+TGG 0.520875 3_4:+75075521 Msa0522020:CDS
CCCGACGTTAGTGGCTCCAT+CGG 0.522200 3_4:-75075363 None:intergenic
GATGGCTTCACACGCAAAGC+TGG 0.522765 3_4:-75077476 None:intergenic
TGGCTCCATCGGCGCATCGA+TGG 0.526428 3_4:-75075352 None:intergenic
TACGTTTAGGAGAAGAGCGT+TGG 0.532582 3_4:+75075560 Msa0522020:CDS
TTGAAAATGTCAATAATGGA+AGG 0.532716 3_4:+75079125 Msa0522020:exon
AAGAGGCATTCCAGTTTCTA+GGG 0.532997 3_4:+75078774 Msa0522020:CDS
CCGATGGAGCCACTAACGTC+GGG 0.538648 3_4:+75075363 Msa0522020:CDS
GTACCATTCTTTGTCCTGCA+TGG 0.539898 3_4:+75078922 Msa0522020:CDS
GGAGCGTGAAGAGATAGCTC+AGG 0.541686 3_4:+75079062 Msa0522020:CDS
TTGGTGTCTATGCAATGGAC+TGG 0.544681 3_4:+75076900 Msa0522020:CDS
TTTAAAGGAGCAAACAAAAG+AGG 0.545499 3_4:+75078757 Msa0522020:CDS
GGTATTATGATCATCATTCA+CGG 0.546448 3_4:+75076580 Msa0522020:CDS
CATACTACACGATATATTGT+GGG 0.546892 3_4:-75079420 None:intergenic
TGAGCTATCTCTTCACGCTC+CGG 0.549656 3_4:-75079060 None:intergenic
AGTGGCGGTGGCGGAAGAAG+CGG 0.550481 3_4:-75075290 None:intergenic
GTTCCATGCAGGACAAAGAA+TGG 0.551493 3_4:-75078925 None:intergenic
TGATAAAGTAACTGATCCAT+TGG 0.551814 3_4:+75078951 Msa0522020:CDS
GGACCTATTAGAGTTCGAAC+TGG 0.553822 3_4:+75078844 Msa0522020:CDS
AAATTCTTCCTCGGAGAAGA+CGG 0.555599 3_4:-75075504 None:intergenic
GCTCTGAACGCTTTGAGAAG+AGG 0.558966 3_4:-75075405 None:intergenic
CTTCCGCCACCCACTCTTCG+GGG 0.559094 3_4:-75079234 None:intergenic
TATAAATCTTGTGAAGCCAA+TGG 0.559126 3_4:-75078967 None:intergenic
GTATTATGATCATCATTCAC+GGG 0.559473 3_4:+75076581 Msa0522020:CDS
GGAGGTAGCGATGGATTACA+TGG 0.561526 3_4:+75077027 Msa0522020:CDS
CGAGGAAGAATTTGAAGAGA+AGG 0.564528 3_4:+75075514 Msa0522020:CDS
ATAAATATAAACACAACTGT+AGG 0.564705 3_4:+75075181 Msa0522020:five_prime_UTR
GTCTTCCATCGATGCGCCGA+TGG 0.566115 3_4:+75075347 Msa0522020:CDS
TAGGAGAAGAGCGTTGGCGC+AGG 0.566223 3_4:+75075566 Msa0522020:CDS
GAAGATATGTAGATTTCGCT+AGG 0.567034 3_4:+75076858 Msa0522020:CDS
TTGATGATGGTTGTTGCCGG+TGG 0.569503 3_4:+75075604 Msa0522020:CDS
GTGAAGTCGCCCCGAAGAGT+GGG 0.572279 3_4:+75079225 Msa0522020:three_prime_UTR
ACGCCAACTATTGGATGAGA+TGG 0.572335 3_4:-75077494 None:intergenic
ATTGTGTGTAGGGATTGTAT+TGG 0.573014 3_4:+75079320 Msa0522020:three_prime_UTR
ACAGGTCATGGAGGTAGCGA+TGG 0.580290 3_4:+75077018 Msa0522020:intron
TGAATGTACAAATTTCTCAA+TGG 0.581196 3_4:-75079346 None:intergenic
GTGGTGGCGGAGGAAAGTGG+CGG 0.584967 3_4:-75075305 None:intergenic
GAGTGACCAAAGAGAAAGCA+TGG 0.586609 3_4:-75077284 None:intergenic
ACGCCCTCACATTGAAGTGA+TGG 0.586809 3_4:+75077430 Msa0522020:CDS
ACTTAAGATCACCGTAAACC+GGG 0.587787 3_4:-75075683 None:intergenic
AGTGAAGTCGCCCCGAAGAG+TGG 0.591565 3_4:+75079224 Msa0522020:three_prime_UTR
ATTATCAGGATTTAGGGCCA+CGG 0.603366 3_4:-75079393 None:intergenic
AAGTCGCCCCGAAGAGTGGG+TGG 0.603817 3_4:+75079228 Msa0522020:three_prime_UTR
GAACGAACAAGAGAAAAGAG+AGG 0.604398 3_4:-75075455 None:intergenic
GGAAGAATTTGAAGAGAAGG+TGG 0.613934 3_4:+75075517 Msa0522020:CDS
TCGCCCCGAAGAGTGGGTGG+CGG 0.617674 3_4:+75079231 Msa0522020:three_prime_UTR
CTACCATCACTTCAATGTGA+GGG 0.617795 3_4:-75077433 None:intergenic
TCAGGACATTATCAACTGGA+TGG 0.624877 3_4:+75079080 Msa0522020:CDS
AGAAAATCGAAGTATTCCAC+CGG 0.625417 3_4:-75075620 None:intergenic
CAACTTTGGTGTCTATGCAA+TGG 0.631929 3_4:+75076895 Msa0522020:CDS
TCTACCATCACTTCAATGTG+AGG 0.636222 3_4:-75077434 None:intergenic
TGTGTAGACGAAGATGAGAG+AGG 0.642743 3_4:-75075427 None:intergenic
TCGATGGAAGACATCGCTAA+CGG 0.645152 3_4:-75075336 None:intergenic
GCAACCACTTGATCAAGAGA+AGG 0.648753 3_4:-75077057 None:intergenic
CGGCTCCACCGTCTTCTCCG+AGG 0.656016 3_4:+75075496 Msa0522020:CDS
GAGCCGCCCTATTCCGACGA+GGG 0.658206 3_4:-75075479 None:intergenic
GCCGATGGAGCCACTAACGT+CGG 0.664482 3_4:+75075362 Msa0522020:CDS
ATAGGTCCTGTGTAGACCAG+AGG 0.665370 3_4:-75078829 None:intergenic
TCTGATCCTCTGGTCTACAC+AGG 0.667077 3_4:+75078823 Msa0522020:CDS
TTCACGGGCTTAATGAACAC+AGG 0.671284 3_4:+75076596 Msa0522020:CDS
TTCTTCCTCGGAGAAGACGG+TGG 0.672952 3_4:-75075501 None:intergenic
GTCTATGCAATGGACTGGAT+AGG 0.677930 3_4:+75076905 Msa0522020:CDS
TCTCCCTCGTCGGAATAGGG+CGG 0.690876 3_4:+75075476 Msa0522020:CDS
ATGGAAGACATCGCTAACGG+CGG 0.697848 3_4:-75075333 None:intergenic
TTTATTGCTACAGGTCATGG+AGG 0.698534 3_4:+75077009 Msa0522020:intron
GGAGCCGCCCTATTCCGACG+AGG 0.713676 3_4:-75075480 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATATAACAAAATTATAT+TGG + chr3_4:75076092-75076111 Msa0522020:intron 10.0%
!! TTTATGTTTATGATAAAAAT+GGG + chr3_4:75076293-75076312 Msa0522020:intron 10.0%
!! AAACATATTAAGTTAAAAAA+GGG - chr3_4:75076405-75076424 None:intergenic 10.0%
!! AAAACATATTAAGTTAAAAA+AGG - chr3_4:75076406-75076425 None:intergenic 10.0%
!!! CTAAAAAAAAATCATATTTT+GGG - chr3_4:75076713-75076732 None:intergenic 10.0%
!! ATATTTATTTATATGTATTG+GGG - chr3_4:75076760-75076779 None:intergenic 10.0%
!!! TAAATATTTGTTTTTATACT+TGG + chr3_4:75077117-75077136 Msa0522020:intron 10.0%
!! GTTTATGTTTATGATAAAAA+TGG + chr3_4:75076292-75076311 Msa0522020:intron 15.0%
!! TTATGTTTATGATAAAAATG+GGG + chr3_4:75076294-75076313 Msa0522020:intron 15.0%
!!! GCTAAAAAAAAATCATATTT+TGG - chr3_4:75076714-75076733 None:intergenic 15.0%
!!! ATTTTTTTTTAGCTTTTGTT+GGG + chr3_4:75076721-75076740 Msa0522020:intron 15.0%
!! TTCATAAATTTAATAACAGA+AGG - chr3_4:75077358-75077377 None:intergenic 15.0%
!! TAAATTTATGAAATCATTGT+TGG + chr3_4:75077366-75077385 Msa0522020:intron 15.0%
!!! ATTTTATTTTATTTAGGTGT+TGG + chr3_4:75079273-75079292 Msa0522020:three_prime_UTR 15.0%
!! TTAAATTATATATTGTGTGT+AGG + chr3_4:75079309-75079328 Msa0522020:three_prime_UTR 15.0%
!! TAAATTATATATTGTGTGTA+GGG + chr3_4:75079310-75079329 Msa0522020:three_prime_UTR 15.0%
!! ATAAATATAAACACAACTGT+AGG + chr3_4:75075181-75075200 Msa0522020:five_prime_UTR 20.0%
!!! CTTGATAATTATGTATGTTA+AGG + chr3_4:75075784-75075803 Msa0522020:intron 20.0%
!! CATATCAATATACTAAATGA+AGG - chr3_4:75076042-75076061 None:intergenic 20.0%
!!! GATTTTTTTTTAGCTTTTGT+TGG + chr3_4:75076720-75076739 Msa0522020:intron 20.0%
!!! TTTTTTTTTAGCTTTTGTTG+GGG + chr3_4:75076722-75076741 Msa0522020:intron 20.0%
!! TGATCGTAATAATATTAACA+GGG + chr3_4:75077221-75077240 Msa0522020:intron 20.0%
!!! TAATTTCTGCATTTTTATGT+AGG + chr3_4:75077400-75077419 Msa0522020:intron 20.0%
!! TCGATAAATTCAAATGAATT+AGG - chr3_4:75077755-75077774 None:intergenic 20.0%
!! ATATAGTGATTAGAATGATA+GGG - chr3_4:75077987-75078006 None:intergenic 20.0%
!! TATATAGTGATTAGAATGAT+AGG - chr3_4:75077988-75078007 None:intergenic 20.0%
!! TCATTCTAATCACTATATAA+AGG + chr3_4:75077989-75078008 Msa0522020:intron 20.0%
!! AAACCAAATGAAAAAAAAAG+TGG - chr3_4:75078057-75078076 None:intergenic 20.0%
!! TTCACAAGATTTATACAATA+AGG + chr3_4:75078975-75078994 Msa0522020:CDS 20.0%
!!! TTTCAAATTTTTCGATTGAT+TGG + chr3_4:75079443-75079462 Msa0522020:three_prime_UTR 20.0%
! GAACTTCAATTTCACAAATT+TGG - chr3_4:75075892-75075911 None:intergenic 25.0%
! TTGTGAAATTGAAGTTCAAT+TGG + chr3_4:75075895-75075914 Msa0522020:intron 25.0%
! TTGAAATTGTGAGATTTCTA+AGG + chr3_4:75075948-75075967 Msa0522020:intron 25.0%
! TCTAAGGAAAATTTAGAAAC+TGG + chr3_4:75075964-75075983 Msa0522020:intron 25.0%
! CTAAGGAAAATTTAGAAACT+GGG + chr3_4:75075965-75075984 Msa0522020:intron 25.0%
! ATGAAGAACAACATAAATAC+AGG - chr3_4:75076007-75076026 None:intergenic 25.0%
! AGTATATTGATATGCTATAC+TGG + chr3_4:75076048-75076067 Msa0522020:intron 25.0%
! AGTATATTGATATGCTATAC+TGG + chr3_4:75076048-75076067 Msa0522020:intron 25.0%
! GAGTTTCATTTATGTCTTAA+AGG + chr3_4:75076158-75076177 Msa0522020:intron 25.0%
!!! TTTTGGGAAAAAGTAAGTAA+AGG - chr3_4:75076697-75076716 None:intergenic 25.0%
!!! TTTTTTTTAGCTTTTGTTGG+GGG + chr3_4:75076723-75076742 Msa0522020:intron 25.0%
! AGATGATGATATGAAGTATA+AGG - chr3_4:75076964-75076983 None:intergenic 25.0%
! TAAAACAAATAACTTCAGAC+CGG - chr3_4:75076993-75077012 None:intergenic 25.0%
!!! GTTATTTGTTTTATTGCTAC+AGG + chr3_4:75077000-75077019 Msa0522020:intron 25.0%
! CGAAAACATTAAATGGTATT+TGG - chr3_4:75077184-75077203 None:intergenic 25.0%
! CTGATCGTAATAATATTAAC+AGG + chr3_4:75077220-75077239 Msa0522020:intron 25.0%
! TACTATGTAAAATAACAGCT+AGG - chr3_4:75077800-75077819 None:intergenic 25.0%
! TATAGTGATTAGAATGATAG+GGG - chr3_4:75077986-75078005 None:intergenic 25.0%
! TACAAAGTTGACAAAAAAAC+CGG - chr3_4:75078027-75078046 None:intergenic 25.0%
! CAAATGAAAAAAAAAGTGGT+TGG - chr3_4:75078053-75078072 None:intergenic 25.0%
!!! CAACCACTTTTTTTTTCATT+TGG + chr3_4:75078051-75078070 Msa0522020:intron 25.0%
!!! TTTTCATTTGGTTTATGACT+TGG + chr3_4:75078063-75078082 Msa0522020:intron 25.0%
! AATATGAATCTGCTAGATAT+AGG - chr3_4:75078225-75078244 None:intergenic 25.0%
! ATATCTAGCAGATTCATATT+AGG + chr3_4:75078225-75078244 Msa0522020:intron 25.0%
! TTCATATTAGGATTCAATTC+AGG + chr3_4:75078237-75078256 Msa0522020:intron 25.0%
! ATCAGGATTCAATTATGAAT+CGG - chr3_4:75078281-75078300 None:intergenic 25.0%
! TAAATAAGCCTAGGAAATAA+AGG - chr3_4:75078425-75078444 None:intergenic 25.0%
!! AAGACATTTTAAATAAGCCT+AGG - chr3_4:75078434-75078453 None:intergenic 25.0%
! CAGAAAATCTTAAGATTATG+TGG + chr3_4:75078585-75078604 Msa0522020:intron 25.0%
! CTGAATCATGTTTATTGTAA+TGG + chr3_4:75078613-75078632 Msa0522020:intron 25.0%
!!! ACACATCCTTTTAAGTTTTA+AGG - chr3_4:75078680-75078699 None:intergenic 25.0%
!!! TTTTGTTTGCTCCTTTAAAT+TGG - chr3_4:75078756-75078775 None:intergenic 25.0%
!! AAAGACATAAAGCTTTATGA+TGG + chr3_4:75079012-75079031 Msa0522020:CDS 25.0%
! GCATTTGAAAATGTCAATAA+TGG + chr3_4:75079121-75079140 Msa0522020:exon 25.0%
!! TTGAAAATGTCAATAATGGA+AGG + chr3_4:75079125-75079144 Msa0522020:exon 25.0%
! TGAATGTACAAATTTCTCAA+TGG - chr3_4:75079349-75079368 None:intergenic 25.0%
! GGATTTATTATCAGGATTTA+GGG - chr3_4:75079402-75079421 None:intergenic 25.0%
! ATATTGTGGGATTTATTATC+AGG - chr3_4:75079410-75079429 None:intergenic 25.0%
ACCGTTAGATCATCAATAAA+CGG + chr3_4:75075135-75075154 Msa0522020:five_prime_UTR 30.0%
! TCCGTTTATTGATGATCTAA+CGG - chr3_4:75075139-75075158 None:intergenic 30.0%
! CTTTGAGAAGAGGAATTATA+CGG - chr3_4:75075398-75075417 None:intergenic 30.0%
! TGGAATACTTCGATTTTCTA+TGG + chr3_4:75075624-75075643 Msa0522020:CDS 30.0%
CTTTGCATGTTGAAATTTGA+AGG + chr3_4:75075758-75075777 Msa0522020:intron 30.0%
!!! AGGGTTTTGGTTTAGATTTT+TGG + chr3_4:75075854-75075873 Msa0522020:intron 30.0%
!!! GTTTTGGTTTAGATTTTTGG+TGG + chr3_4:75075857-75075876 Msa0522020:intron 30.0%
CATACTTCAAAACCAAATTG+TGG - chr3_4:75076194-75076213 None:intergenic 30.0%
! AAGTTATCATGTTAGTCTCT+AGG + chr3_4:75076248-75076267 Msa0522020:intron 30.0%
!! ATAAAAATGGGGTACTGTAT+TGG + chr3_4:75076305-75076324 Msa0522020:intron 30.0%
!! GAGATTTTAATCGAGGATTT+GGG - chr3_4:75076383-75076402 None:intergenic 30.0%
!! AAAAAGGGAGATTTTAATCG+AGG - chr3_4:75076390-75076409 None:intergenic 30.0%
ACCCAAATAAAAGCAAGAAA+GGG - chr3_4:75076489-75076508 None:intergenic 30.0%
AACCCAAATAAAAGCAAGAA+AGG - chr3_4:75076490-75076509 None:intergenic 30.0%
! ATTTTCGCTTATGTTCTTTC+AGG + chr3_4:75076557-75076576 Msa0522020:intron 30.0%
! TTTTCGCTTATGTTCTTTCA+GGG + chr3_4:75076558-75076577 Msa0522020:intron 30.0%
GGTATTATGATCATCATTCA+CGG + chr3_4:75076580-75076599 Msa0522020:CDS 30.0%
GTATTATGATCATCATTCAC+GGG + chr3_4:75076581-75076600 Msa0522020:CDS 30.0%
!!! TTTTTTTAGCTTTTGTTGGG+GGG + chr3_4:75076724-75076743 Msa0522020:intron 30.0%
CTTGGAATGAAAAGAACTTT+AGG + chr3_4:75077135-75077154 Msa0522020:intron 30.0%
! TTTCTGCATTTTTATGTAGG+CGG + chr3_4:75077403-75077422 Msa0522020:intron 30.0%
GACATTAACAGTTGAAAAGA+AGG - chr3_4:75077667-75077686 None:intergenic 30.0%
TTATTTGCATTTGACAGTCA+GGG - chr3_4:75077693-75077712 None:intergenic 30.0%
TTTATTTGCATTTGACAGTC+AGG - chr3_4:75077694-75077713 None:intergenic 30.0%
TCTCTAGTGTGTATCTTTAT+TGG + chr3_4:75077941-75077960 Msa0522020:intron 30.0%
TAGATGATATATGAGCTTGT+AGG + chr3_4:75078109-75078128 Msa0522020:intron 30.0%
TATGAGCCTAAATATGAGAA+GGG - chr3_4:75078490-75078509 None:intergenic 30.0%
TGATCAATGCTTAAATGGAA+AGG - chr3_4:75078516-75078535 None:intergenic 30.0%
AAGCATGATCAATGCTTAAA+TGG - chr3_4:75078521-75078540 None:intergenic 30.0%
ATCATGCTTTCTTTGATGAA+GGG + chr3_4:75078532-75078551 Msa0522020:intron 30.0%
AAAGCACAAAGTACATTCAA+AGG - chr3_4:75078644-75078663 None:intergenic 30.0%
TTCCTGCCTTAAAACTTAAA+AGG + chr3_4:75078671-75078690 Msa0522020:intron 30.0%
!!! ATCCTTTTAAGTTTTAAGGC+AGG - chr3_4:75078676-75078695 None:intergenic 30.0%
TTTAAAGGAGCAAACAAAAG+AGG + chr3_4:75078757-75078776 Msa0522020:CDS 30.0%
ATGATATTCGCAGTATTTCA+TGG - chr3_4:75078870-75078889 None:intergenic 30.0%
TGATAAAGTAACTGATCCAT+TGG + chr3_4:75078951-75078970 Msa0522020:CDS 30.0%
TATAAATCTTGTGAAGCCAA+TGG - chr3_4:75078970-75078989 None:intergenic 30.0%
! AACTTTGGTAGTTAGAAAGT+TGG - chr3_4:75079189-75079208 None:intergenic 30.0%
AACTTTCTAACTACCAAAGT+TGG + chr3_4:75079188-75079207 Msa0522020:three_prime_UTR 30.0%
! TAAATTTCAGTGATTTTCCG+TGG + chr3_4:75079376-75079395 Msa0522020:three_prime_UTR 30.0%
GGGATTTATTATCAGGATTT+AGG - chr3_4:75079403-75079422 None:intergenic 30.0%
CATACTACACGATATATTGT+GGG - chr3_4:75079423-75079442 None:intergenic 30.0%
ACATACTACACGATATATTG+TGG - chr3_4:75079424-75079443 None:intergenic 30.0%
CTTCTCTTCAAATTCTTCCT+CGG - chr3_4:75075516-75075535 None:intergenic 35.0%
! AGAAAATCGAAGTATTCCAC+CGG - chr3_4:75075623-75075642 None:intergenic 35.0%
TACTTAAGATCACCGTAAAC+CGG - chr3_4:75075687-75075706 None:intergenic 35.0%
GTTTACGGTGATCTTAAGTA+AGG + chr3_4:75075687-75075706 Msa0522020:intron 35.0%
AAGCTTCATAGTGTGAAAAG+AGG + chr3_4:75075834-75075853 Msa0522020:intron 35.0%
AGCTTCATAGTGTGAAAAGA+GGG + chr3_4:75075835-75075854 Msa0522020:intron 35.0%
! ATAGTGTGAAAAGAGGGTTT+TGG + chr3_4:75075841-75075860 Msa0522020:intron 35.0%
AACTGGGTAGATCGAATTAT+TGG + chr3_4:75075981-75076000 Msa0522020:intron 35.0%
TCAAAACCAAATTGTGGAGA+TGG - chr3_4:75076188-75076207 None:intergenic 35.0%
!! GGAGATTTTAATCGAGGATT+TGG - chr3_4:75076384-75076403 None:intergenic 35.0%
GATAGAAAACTCTTGCCTAT+TGG + chr3_4:75076460-75076479 Msa0522020:intron 35.0%
!! AGCCCTTTCTTGCTTTTATT+TGG + chr3_4:75076484-75076503 Msa0522020:intron 35.0%
!! GCCCTTTCTTGCTTTTATTT+GGG + chr3_4:75076485-75076504 Msa0522020:intron 35.0%
TTCTATTCCATACAGTTGTG+CGG + chr3_4:75076508-75076527 Msa0522020:intron 35.0%
! TGCGGCTCTTTTTAAACATT+TGG + chr3_4:75076526-75076545 Msa0522020:intron 35.0%
TTTCGCTTATGTTCTTTCAG+GGG + chr3_4:75076559-75076578 Msa0522020:intron 35.0%
! TCAATAGTTGTTACTTGCTG+TGG + chr3_4:75076659-75076678 Msa0522020:intron 35.0%
!! CAATAGTTGTTACTTGCTGT+GGG + chr3_4:75076660-75076679 Msa0522020:intron 35.0%
!! ATGAGTACTGAGTCAGAATT+GGG - chr3_4:75076829-75076848 None:intergenic 35.0%
!! AATGAGTACTGAGTCAGAAT+TGG - chr3_4:75076830-75076849 None:intergenic 35.0%
!! ACTCAGTACTCATTTTTCAG+CGG + chr3_4:75076836-75076855 Msa0522020:intron 35.0%
GAAGATATGTAGATTTCGCT+AGG + chr3_4:75076858-75076877 Msa0522020:CDS 35.0%
CAGTTAACATTGTGCAACTT+TGG + chr3_4:75076881-75076900 Msa0522020:CDS 35.0%
CATATCATCATCTTTGTGTC+CGG + chr3_4:75076971-75076990 Msa0522020:intron 35.0%
!! TGTTTTATTGCTACAGGTCA+TGG + chr3_4:75077006-75077025 Msa0522020:intron 35.0%
CGCATAGCGAAAACATTAAA+TGG - chr3_4:75077191-75077210 None:intergenic 35.0%
ATATTAACAGGGAGCTTTCT+TGG + chr3_4:75077232-75077251 Msa0522020:intron 35.0%
AAGATTAGATCAGAGAATCC+TGG + chr3_4:75077257-75077276 Msa0522020:CDS 35.0%
TAACAGTTGAAAAGAAGGCA+GGG - chr3_4:75077662-75077681 None:intergenic 35.0%
TTAACAGTTGAAAAGAAGGC+AGG - chr3_4:75077663-75077682 None:intergenic 35.0%
TGTGTCGTAGTATCTTGATT+TGG + chr3_4:75077891-75077910 Msa0522020:intron 35.0%
TGGTACAAAACTGAACTCAA+TGG + chr3_4:75077911-75077930 Msa0522020:intron 35.0%
ATAAAGGTAGTATAGCCAAC+CGG + chr3_4:75078005-75078024 Msa0522020:intron 35.0%
AAGTTGACAAAAAAACCGGT+TGG - chr3_4:75078023-75078042 None:intergenic 35.0%
TTACACTGAGTGGTTAAATC+AGG - chr3_4:75078298-75078317 None:intergenic 35.0%
!! AAATAAGAGCACTAGATGCA+GGG - chr3_4:75078369-75078388 None:intergenic 35.0%
!! TGCTCTTATTTCTGATCTGT+TGG + chr3_4:75078378-75078397 Msa0522020:intron 35.0%
GTATGAGCCTAAATATGAGA+AGG - chr3_4:75078491-75078510 None:intergenic 35.0%
TCAATGCTTAAATGGAAAGG+AGG - chr3_4:75078513-75078532 None:intergenic 35.0%
GATCATGCTTTCTTTGATGA+AGG + chr3_4:75078531-75078550 Msa0522020:intron 35.0%
! TGTTGCTCCAATATTTTCTC+TGG + chr3_4:75078717-75078736 Msa0522020:CDS 35.0%
AGAAGTCAGCACCAAAAAAA+AGG + chr3_4:75079155-75079174 Msa0522020:three_prime_UTR 35.0%
GAAGTCAGCACCAAAAAAAA+GGG + chr3_4:75079156-75079175 Msa0522020:three_prime_UTR 35.0%
AAGTCAGCACCAAAAAAAAG+GGG + chr3_4:75079157-75079176 Msa0522020:three_prime_UTR 35.0%
ATTGTGTGTAGGGATTGTAT+TGG + chr3_4:75079320-75079339 Msa0522020:three_prime_UTR 35.0%
GAGAAATTTGTACATTCAGC+TGG + chr3_4:75079351-75079370 Msa0522020:three_prime_UTR 35.0%
AAGAGGAATTATACGGTTGC+TGG - chr3_4:75075391-75075410 None:intergenic 40.0%
GAACGAACAAGAGAAAAGAG+AGG - chr3_4:75075458-75075477 None:intergenic 40.0%
AAATTCTTCCTCGGAGAAGA+CGG - chr3_4:75075507-75075526 None:intergenic 40.0%
CGAGGAAGAATTTGAAGAGA+AGG + chr3_4:75075514-75075533 Msa0522020:CDS 40.0%
GGAAGAATTTGAAGAGAAGG+TGG + chr3_4:75075517-75075536 Msa0522020:CDS 40.0%
GAATTTGAAGAGAAGGTGGT+TGG + chr3_4:75075521-75075540 Msa0522020:CDS 40.0%
!!! ATGCTTTGTTTTGTCGCTCT+TGG + chr3_4:75075658-75075677 Msa0522020:CDS 40.0%
ACTTAAGATCACCGTAAACC+GGG - chr3_4:75075686-75075705 None:intergenic 40.0%
! GTACTGAAGAGTGTGTTAGA+TGG + chr3_4:75076357-75076376 Msa0522020:intron 40.0%
!! CAACTTTGGTGTCTATGCAA+TGG + chr3_4:75076895-75076914 Msa0522020:CDS 40.0%
TTTATTGCTACAGGTCATGG+AGG + chr3_4:75077009-75077028 Msa0522020:intron 40.0%
TGTTCCTTCTCTTGATCAAG+TGG + chr3_4:75077053-75077072 Msa0522020:CDS 40.0%
! AAGAGAAAGCATGGTATTCC+AGG - chr3_4:75077278-75077297 None:intergenic 40.0%
GGAATACCATGCTTTCTCTT+TGG + chr3_4:75077278-75077297 Msa0522020:CDS 40.0%
TTTCTCTTTGGTCACTCAAC+TGG + chr3_4:75077290-75077309 Msa0522020:CDS 40.0%
CTACCATCACTTCAATGTGA+GGG - chr3_4:75077436-75077455 None:intergenic 40.0%
TCTACCATCACTTCAATGTG+AGG - chr3_4:75077437-75077456 None:intergenic 40.0%
CACATTGAAGTGATGGTAGA+AGG + chr3_4:75077437-75077456 Msa0522020:CDS 40.0%
AAGCCATCTCATCCAATAGT+TGG + chr3_4:75077491-75077510 Msa0522020:CDS 40.0%
GCAAAACTTACGCCAACTAT+TGG - chr3_4:75077506-75077525 None:intergenic 40.0%
CAGTAGTATGATGTGAGCTT+TGG + chr3_4:75077715-75077734 Msa0522020:intron 40.0%
GATAAACCTGACTAGATCTG+AGG + chr3_4:75077822-75077841 Msa0522020:intron 40.0%
! CTGTTAGTTCTTATGCCCTT+AGG + chr3_4:75078196-75078215 Msa0522020:intron 40.0%
GCTAGATATAGGACTCCTAA+GGG - chr3_4:75078214-75078233 None:intergenic 40.0%
TGCTAGATATAGGACTCCTA+AGG - chr3_4:75078215-75078234 None:intergenic 40.0%
!! AATAAGAGCACTAGATGCAG+GGG - chr3_4:75078368-75078387 None:intergenic 40.0%
!! GAAATAAGAGCACTAGATGC+AGG - chr3_4:75078370-75078389 None:intergenic 40.0%
GGCATGAATGATGCTAAAAC+CGG + chr3_4:75078399-75078418 Msa0522020:intron 40.0%
! AAAACCGGCCTTTATTTCCT+AGG + chr3_4:75078414-75078433 Msa0522020:intron 40.0%
TAAGCCTAGGAAATAAAGGC+CGG - chr3_4:75078421-75078440 None:intergenic 40.0%
CCTAAATATGAGAAGGGATG+TGG - chr3_4:75078484-75078503 None:intergenic 40.0%
CCACATCCCTTCTCATATTT+AGG + chr3_4:75078481-75078500 Msa0522020:intron 40.0%
GGAGCTACCAGAGAAAATAT+TGG - chr3_4:75078727-75078746 None:intergenic 40.0%
! TATTTTCTCTGGTAGCTCCA+AGG + chr3_4:75078728-75078747 Msa0522020:CDS 40.0%
GCTCCAAGGTTCCAATTTAA+AGG + chr3_4:75078742-75078761 Msa0522020:CDS 40.0%
GCTCCTTTAAATTGGAACCT+TGG - chr3_4:75078748-75078767 None:intergenic 40.0%
!! AAAGAGGCATTCCAGTTTCT+AGG + chr3_4:75078773-75078792 Msa0522020:CDS 40.0%
!! AAGAGGCATTCCAGTTTCTA+GGG + chr3_4:75078774-75078793 Msa0522020:CDS 40.0%
TAGCTCAGGACATTATCAAC+TGG + chr3_4:75079076-75079095 Msa0522020:CDS 40.0%
TCAGGACATTATCAACTGGA+TGG + chr3_4:75079080-75079099 Msa0522020:CDS 40.0%
AGTCAGCACCAAAAAAAAGG+GGG + chr3_4:75079158-75079177 Msa0522020:three_prime_UTR 40.0%
TTCTACACACTTGCCAACTT+TGG - chr3_4:75079204-75079223 None:intergenic 40.0%
! ATTATCAGGATTTAGGGCCA+CGG - chr3_4:75079396-75079415 None:intergenic 40.0%
TCGATGGAAGACATCGCTAA+CGG - chr3_4:75075339-75075358 None:intergenic 45.0%
TGTGTAGACGAAGATGAGAG+AGG - chr3_4:75075430-75075449 None:intergenic 45.0%
! TGAAGAGAAGGTGGTTGGTT+AGG + chr3_4:75075526-75075545 Msa0522020:CDS 45.0%
! GAAGAGAAGGTGGTTGGTTA+GGG + chr3_4:75075527-75075546 Msa0522020:CDS 45.0%
GGGAAGAAGAGGATACGTTT+AGG + chr3_4:75075547-75075566 Msa0522020:CDS 45.0%
! TACGTTTAGGAGAAGAGCGT+TGG + chr3_4:75075560-75075579 Msa0522020:CDS 45.0%
GTTGGAATGGGTCTTGATGA+TGG + chr3_4:75075591-75075610 Msa0522020:CDS 45.0%
!! GTCTTGATGATGGTTGTTGC+CGG + chr3_4:75075601-75075620 Msa0522020:CDS 45.0%
GGATCACCATCTCCACAATT+TGG + chr3_4:75076179-75076198 Msa0522020:intron 45.0%
!! GATTGATTTGCCTTTGCACG+AGG + chr3_4:75076433-75076452 Msa0522020:intron 45.0%
ATTTGCCTTTGCACGAGGAA+TGG + chr3_4:75076438-75076457 Msa0522020:intron 45.0%
TCTATCCATTCCTCGTGCAA+AGG - chr3_4:75076446-75076465 None:intergenic 45.0%
AAAAGAGCCGCACAACTGTA+TGG - chr3_4:75076518-75076537 None:intergenic 45.0%
TTCACGGGCTTAATGAACAC+AGG + chr3_4:75076596-75076615 Msa0522020:CDS 45.0%
! AGTACTGAGTCAGAATTGGG+TGG - chr3_4:75076826-75076845 None:intergenic 45.0%
! TTGGTGTCTATGCAATGGAC+TGG + chr3_4:75076900-75076919 Msa0522020:CDS 45.0%
!! GTCTATGCAATGGACTGGAT+AGG + chr3_4:75076905-75076924 Msa0522020:CDS 45.0%
GCAACCACTTGATCAAGAGA+AGG - chr3_4:75077060-75077079 None:intergenic 45.0%
GAGTGACCAAAGAGAAAGCA+TGG - chr3_4:75077287-75077306 None:intergenic 45.0%
TCTTTGGTCACTCAACTGGA+GGG + chr3_4:75077294-75077313 Msa0522020:CDS 45.0%
ACGCCAACTATTGGATGAGA+TGG - chr3_4:75077497-75077516 None:intergenic 45.0%
! GGCGTAAGTTTTGCACTTCT+TGG + chr3_4:75077512-75077531 Msa0522020:intron 45.0%
! TGTTGCTTCTGTGCTCAGTT+TGG + chr3_4:75077571-75077590 Msa0522020:intron 45.0%
AAGGCAGGGATGTTCTTTCA+TGG - chr3_4:75077648-75077667 None:intergenic 45.0%
CCACTCACATTTACACTGAG+TGG - chr3_4:75078308-75078327 None:intergenic 45.0%
CCACTCAGTGTAAATGTGAG+TGG + chr3_4:75078305-75078324 Msa0522020:intron 45.0%
! GATGTGTAACGTGTTGATGC+AGG + chr3_4:75078693-75078712 Msa0522020:intron 45.0%
TACTTTGCCAACAAAGCTGC+TGG - chr3_4:75078802-75078821 None:intergenic 45.0%
GGACCTATTAGAGTTCGAAC+TGG + chr3_4:75078844-75078863 Msa0522020:CDS 45.0%
TGGCCAGTTCGAACTCTAAT+AGG - chr3_4:75078850-75078869 None:intergenic 45.0%
GTACCATTCTTTGTCCTGCA+TGG + chr3_4:75078922-75078941 Msa0522020:CDS 45.0%
GTTCCATGCAGGACAAAGAA+TGG - chr3_4:75078928-75078947 None:intergenic 45.0%
CTTTATCAGCAGTTCCATGC+AGG - chr3_4:75078939-75078958 None:intergenic 45.0%
GTCAGCACCAAAAAAAAGGG+GGG + chr3_4:75079159-75079178 Msa0522020:three_prime_UTR 45.0%
TCAGCACCAAAAAAAAGGGG+GGG + chr3_4:75079160-75079179 Msa0522020:three_prime_UTR 45.0%
!! AATATTTATTTATATGTATT+GGG - chr3_4:75076761-75076780 None:intergenic 5.0%
!! AAATATTTATTTATATGTAT+TGG - chr3_4:75076762-75076781 None:intergenic 5.0%
!! ATATAAATAAATATTTCTTA+TGG + chr3_4:75076766-75076785 Msa0522020:intron 5.0%
!!! TAAAAATATCATATTTTTAT+TGG + chr3_4:75078156-75078175 Msa0522020:intron 5.0%
!!! ATTCATATTTTATTTTATTT+AGG + chr3_4:75079267-75079286 Msa0522020:three_prime_UTR 5.0%
ATGGAAGACATCGCTAACGG+CGG - chr3_4:75075336-75075355 None:intergenic 50.0%
!! GCTCTGAACGCTTTGAGAAG+AGG - chr3_4:75075408-75075427 None:intergenic 50.0%
TCTTGTTCGTTCTCCCTCGT+CGG + chr3_4:75075466-75075485 Msa0522020:CDS 50.0%
! GTGGTTGGTTAGGGAAGAAG+AGG + chr3_4:75075536-75075555 Msa0522020:CDS 50.0%
TTGGCGCAGGATGTTGGAAT+GGG + chr3_4:75075579-75075598 Msa0522020:CDS 50.0%
!! TTGATGATGGTTGTTGCCGG+TGG + chr3_4:75075604-75075623 Msa0522020:CDS 50.0%
! GTTTTGTCGCTCTTGGTTCC+CGG + chr3_4:75075665-75075684 Msa0522020:CDS 50.0%
AGCAAGAAAGGGCTGCCAAT+AGG - chr3_4:75076478-75076497 None:intergenic 50.0%
! AGCTTTTGTTGGGGGGTCTT+CGG + chr3_4:75076731-75076750 Msa0522020:intron 50.0%
!! GGAGGTAGCGATGGATTACA+TGG + chr3_4:75077027-75077046 Msa0522020:CDS 50.0%
CTCTTTGGTCACTCAACTGG+AGG + chr3_4:75077293-75077312 Msa0522020:CDS 50.0%
CTTTGGTCACTCAACTGGAG+GGG + chr3_4:75077295-75077314 Msa0522020:CDS 50.0%
ACGCCCTCACATTGAAGTGA+TGG + chr3_4:75077430-75077449 Msa0522020:CDS 50.0%
TGAGTGCCTCAGATCTAGTC+AGG - chr3_4:75077831-75077850 None:intergenic 50.0%
! TAGGGATCCAGCAGCTTTGT+TGG + chr3_4:75078792-75078811 Msa0522020:CDS 50.0%
! GGCAAAGTACTCTGATCCTC+TGG + chr3_4:75078813-75078832 Msa0522020:CDS 50.0%
TCTGATCCTCTGGTCTACAC+AGG + chr3_4:75078823-75078842 Msa0522020:CDS 50.0%
ATAGGTCCTGTGTAGACCAG+AGG - chr3_4:75078832-75078851 None:intergenic 50.0%
!! GCACGACCTTTTGTTTGAGC+CGG + chr3_4:75079041-75079060 Msa0522020:CDS 50.0%
TGAGCTATCTCTTCACGCTC+CGG - chr3_4:75079063-75079082 None:intergenic 50.0%
!!! TGGCAACCCCCCCTTTTTTT+TGG - chr3_4:75079169-75079188 None:intergenic 50.0%
TCGTTCTCCCTCGTCGGAAT+AGG + chr3_4:75075472-75075491 Msa0522020:CDS 55.0%
CGTTCTCCCTCGTCGGAATA+GGG + chr3_4:75075473-75075492 Msa0522020:CDS 55.0%
TTCTTCCTCGGAGAAGACGG+TGG - chr3_4:75075504-75075523 None:intergenic 55.0%
GTTGGCGCAGGATGTTGGAA+TGG + chr3_4:75075578-75075597 Msa0522020:CDS 55.0%
CGCTCTTGGTTCCCGGTTTA+CGG + chr3_4:75075672-75075691 Msa0522020:CDS 55.0%
! GCTTTTGTTGGGGGGTCTTC+GGG + chr3_4:75076732-75076751 Msa0522020:intron 55.0%
ACAGGTCATGGAGGTAGCGA+TGG + chr3_4:75077018-75077037 Msa0522020:intron 55.0%
GATGGCTTCACACGCAAAGC+TGG - chr3_4:75077479-75077498 None:intergenic 55.0%
GCTGCTGGATCCCTAGAAAC+TGG - chr3_4:75078787-75078806 None:intergenic 55.0%
CACGCTCCGGCTCAAACAAA+AGG - chr3_4:75079050-75079069 None:intergenic 55.0%
GGAGCGTGAAGAGATAGCTC+AGG + chr3_4:75079062-75079081 Msa0522020:CDS 55.0%
GAAGACATCGCTAACGGCGG+CGG - chr3_4:75075333-75075352 None:intergenic 60.0%
GTCTTCCATCGATGCGCCGA+TGG + chr3_4:75075347-75075366 Msa0522020:CDS 60.0%
GCCGATGGAGCCACTAACGT+CGG + chr3_4:75075362-75075381 Msa0522020:CDS 60.0%
CCCGACGTTAGTGGCTCCAT+CGG - chr3_4:75075366-75075385 None:intergenic 60.0%
CCGATGGAGCCACTAACGTC+GGG + chr3_4:75075363-75075382 Msa0522020:CDS 60.0%
TTGCTGGCACCCGACGTTAG+TGG - chr3_4:75075375-75075394 None:intergenic 60.0%
TCTCCCTCGTCGGAATAGGG+CGG + chr3_4:75075476-75075495 Msa0522020:CDS 60.0%
!! TAGGAGAAGAGCGTTGGCGC+AGG + chr3_4:75075566-75075585 Msa0522020:CDS 60.0%
!! AGAGCGTTGGCGCAGGATGT+TGG + chr3_4:75075573-75075592 Msa0522020:CDS 60.0%
TCACTCAACTGGAGGGGCTG+TGG + chr3_4:75077301-75077320 Msa0522020:CDS 60.0%
AGTGAAGTCGCCCCGAAGAG+TGG + chr3_4:75079224-75079243 Msa0522020:three_prime_UTR 60.0%
GTGAAGTCGCCCCGAAGAGT+GGG + chr3_4:75079225-75079244 Msa0522020:three_prime_UTR 60.0%
TGCTTCCGCCACCCACTCTT+CGG - chr3_4:75079239-75079258 None:intergenic 60.0%
!! AGTGGGTGGCGGAAGCAGAT+AGG + chr3_4:75079242-75079261 Msa0522020:three_prime_UTR 60.0%
!! AGTGGCGGTGGCGGAAGAAG+CGG - chr3_4:75075293-75075312 None:intergenic 65.0%
!! GTGGTGGCGGAGGAAAGTGG+CGG - chr3_4:75075308-75075327 None:intergenic 65.0%
TGGCTCCATCGGCGCATCGA+TGG - chr3_4:75075355-75075374 None:intergenic 65.0%
GAGCCGCCCTATTCCGACGA+GGG - chr3_4:75075482-75075501 None:intergenic 65.0%
GATGCAGGGGACGCGATGCT+GGG - chr3_4:75078355-75078374 None:intergenic 65.0%
AGATGCAGGGGACGCGATGC+TGG - chr3_4:75078356-75078375 None:intergenic 65.0%
AAGTCGCCCCGAAGAGTGGG+TGG + chr3_4:75079228-75079247 Msa0522020:three_prime_UTR 65.0%
CTTCCGCCACCCACTCTTCG+GGG - chr3_4:75079237-75079256 None:intergenic 65.0%
GCTTCCGCCACCCACTCTTC+GGG - chr3_4:75079238-75079257 None:intergenic 65.0%
GCGGAGGAAAGTGGCGGTGG+CGG - chr3_4:75075302-75075321 None:intergenic 70.0%
! GTGGCGGAGGAAAGTGGCGG+TGG - chr3_4:75075305-75075324 None:intergenic 70.0%
!! GCGGTGGTGGCGGAGGAAAG+TGG - chr3_4:75075311-75075330 None:intergenic 70.0%
GACATCGCTAACGGCGGCGG+CGG - chr3_4:75075330-75075349 None:intergenic 70.0%
GGAGCCGCCCTATTCCGACG+AGG - chr3_4:75075483-75075502 None:intergenic 70.0%
CGGCTCCACCGTCTTCTCCG+AGG + chr3_4:75075496-75075515 Msa0522020:CDS 70.0%
TCGCCCCGAAGAGTGGGTGG+CGG + chr3_4:75079231-75079250 Msa0522020:three_prime_UTR 70.0%
ATCGCTAACGGCGGCGGCGG+TGG - chr3_4:75075327-75075346 None:intergenic 75.0%
!! AACGGCGGCGGCGGTGGTGG+CGG - chr3_4:75075321-75075340 None:intergenic 80.0%
! GCTAACGGCGGCGGCGGTGG+TGG - chr3_4:75075324-75075343 None:intergenic 80.0%
!!! GGCGGCGGCGGTGGTGGCGG+AGG - chr3_4:75075318-75075337 None:intergenic 90.0%
Chromosome Type Strat End Strand Name
chr3_4 gene 75075113 75079506 75075113 ID=Msa0522020;Name=Msa0522020
chr3_4 mRNA 75075113 75079506 75075113 ID=Msa0522020-mRNA-1;Parent=Msa0522020;Name=Msa0522020-mRNA-1;_AED=0.06;_eAED=0.06;_QI=232|1|1|1|1|1|7|378|376
chr3_4 exon 75075113 75075703 75075113 ID=Msa0522020-mRNA-1:exon:21348;Parent=Msa0522020-mRNA-1
chr3_4 exon 75076579 75076617 75076579 ID=Msa0522020-mRNA-1:exon:21349;Parent=Msa0522020-mRNA-1
chr3_4 exon 75076856 75076926 75076856 ID=Msa0522020-mRNA-1:exon:21350;Parent=Msa0522020-mRNA-1
chr3_4 exon 75077022 75077086 75077022 ID=Msa0522020-mRNA-1:exon:21351;Parent=Msa0522020-mRNA-1
chr3_4 exon 75077242 75077331 75077242 ID=Msa0522020-mRNA-1:exon:21352;Parent=Msa0522020-mRNA-1
chr3_4 exon 75077422 75077514 75077422 ID=Msa0522020-mRNA-1:exon:21353;Parent=Msa0522020-mRNA-1
chr3_4 exon 75078715 75079506 75078715 ID=Msa0522020-mRNA-1:exon:21354;Parent=Msa0522020-mRNA-1
chr3_4 five_prime_UTR 75075113 75075344 75075113 ID=Msa0522020-mRNA-1:five_prime_utr;Parent=Msa0522020-mRNA-1
chr3_4 CDS 75075345 75075703 75075345 ID=Msa0522020-mRNA-1:cds;Parent=Msa0522020-mRNA-1
chr3_4 CDS 75076579 75076617 75076579 ID=Msa0522020-mRNA-1:cds;Parent=Msa0522020-mRNA-1
chr3_4 CDS 75076856 75076926 75076856 ID=Msa0522020-mRNA-1:cds;Parent=Msa0522020-mRNA-1
chr3_4 CDS 75077022 75077086 75077022 ID=Msa0522020-mRNA-1:cds;Parent=Msa0522020-mRNA-1
chr3_4 CDS 75077242 75077331 75077242 ID=Msa0522020-mRNA-1:cds;Parent=Msa0522020-mRNA-1
chr3_4 CDS 75077422 75077514 75077422 ID=Msa0522020-mRNA-1:cds;Parent=Msa0522020-mRNA-1
chr3_4 CDS 75078715 75079128 75078715 ID=Msa0522020-mRNA-1:cds;Parent=Msa0522020-mRNA-1
chr3_4 three_prime_UTR 75079129 75079506 75079129 ID=Msa0522020-mRNA-1:three_prime_utr;Parent=Msa0522020-mRNA-1
Gene Sequence

>Msa0522020

ATGTCTTCCATCGATGCGCCGATGGAGCCACTAACGTCGGGTGCCAGCAACCGTATAATTCCTCTTCTCAAAGCGTTCAGAGCCTCTCTCATCTTCGTCTACACATTCTTCCTCTCTTTTCTCTTGTTCGTTCTCCCTCGTCGGAATAGGGCGGCTCCACCGTCTTCTCCGAGGAAGAATTTGAAGAGAAGGTGGTTGGTTAGGGAAGAAGAGGATACGTTTAGGAGAAGAGCGTTGGCGCAGGATGTTGGAATGGGTCTTGATGATGGTTGTTGCCGGTGGAATACTTCGATTTTCTATGGTGTTAGAAATAATGCTTTGTTTTGTCGCTCTTGGTTCCCGGTTTACGGTGATCTTAAGGGTATTATGATCATCATTCACGGGCTTAATGAACACAGCGGAAGATATGTAGATTTCGCTAGGCAGTTAACATTGTGCAACTTTGGTGTCTATGCAATGGACTGGATAGGTCATGGAGGTAGCGATGGATTACATGGTTATGTTCCTTCTCTTGATCAAGTGGTTGCAGACACAGGAGCTTTCTTGGAAAAGATTAGATCAGAGAATCCTGGAATACCATGCTTTCTCTTTGGTCACTCAACTGGAGGGGCTGTGGTTTTGAAAGCGGCATCACGCCCTCACATTGAAGTGATGGTAGAAGGAATCATTTTAACATCACCAGCTTTGCGTGTGAAGCCATCTCATCCAATAGTTGGCGCTGTTGCTCCAATATTTTCTCTGGTAGCTCCAAGGTTCCAATTTAAAGGAGCAAACAAAAGAGGCATTCCAGTTTCTAGGGATCCAGCAGCTTTGTTGGCAAAGTACTCTGATCCTCTGGTCTACACAGGACCTATTAGAGTTCGAACTGGCCATGAAATACTGCGAATATCATCATACTTAATGCGAAACTTCAAGTCTGTGACAGTACCATTCTTTGTCCTGCATGGAACTGCTGATAAAGTAACTGATCCATTGGCTTCACAAGATTTATACAATAAGGCAGCTTCTGAGTTCAAAGACATAAAGCTTTATGATGGTTTCTTGCACGACCTTTTGTTTGAGCCGGAGCGTGAAGAGATAGCTCAGGACATTATCAACTGGATGGAAAACAGATTATTTACTAGCATTTGA
Protein sequence

>Msa0522020

MSSIDAPMEPLTSGASNRIIPLLKAFRASLIFVYTFFLSFLLFVLPRRNRAAPPSSPRKNLKRRWLVREEEDTFRRRALAQDVGMGLDDGCCRWNTSIFYGVRNNALFCRSWFPVYGDLKGIMIIIHGLNEHSGRYVDFARQLTLCNFGVYAMDWIGHGGSDGLHGYVPSLDQVVADTGAFLEKIRSENPGIPCFLFGHSTGGAVVLKAASRPHIEVMVEGIILTSPALRVKPSHPIVGAVAPIFSLVAPRFQFKGANKRGIPVSRDPAALLAKYSDPLVYTGPIRVRTGHEILRISSYLMRNFKSVTVPFFVLHGTADKVTDPLASQDLYNKAASEFKDIKLYDGFLHDLLFEPEREEIAQDIINWMENRLFTSI*