AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0478010

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478010 MtrunA17_Chr3g0140431 94.712 624 3 2 85 704 1 598 0.0 1226
Msa0478010 MtrunA17_Chr1g0146301 76.056 710 135 6 2 704 3 684 0.0 1095
Msa0478010 MtrunA17_Chr7g0214531 75.362 621 121 2 89 703 4 598 0.0 1009
Msa0478010 MtrunA17_Chr8g0340491 74.566 633 126 4 80 704 86 691 0.0 971
Msa0478010 MtrunA17_Chr1g0213321 73.486 611 133 3 96 703 91 675 0.0 967
Msa0478010 MtrunA17_Chr7g0253211 72.123 617 141 2 92 703 294 884 0.0 955
Msa0478010 MtrunA17_Chr4g0071031 36.455 299 153 6 122 417 9 273 1.10e-53 191
Msa0478010 MtrunA17_Chr2g0329981 35.786 299 155 6 122 417 9 273 3.86e-53 190
Msa0478010 MtrunA17_Chr2g0299661 35.452 299 156 6 122 417 9 273 1.44e-51 186
Msa0478010 MtrunA17_Chr1g0166821 35.738 305 157 7 116 417 6 274 2.20e-51 185
Msa0478010 MtrunA17_Chr7g0261501 35.786 299 155 6 122 417 9 273 2.90e-51 185
Msa0478010 MtrunA17_Chr8g0342821 35.836 293 150 7 122 411 9 266 2.93e-51 185
Msa0478010 MtrunA17_Chr1g0187571 35.410 305 158 7 116 417 6 274 1.91e-49 180
Msa0478010 MtrunA17_Chr1g0183631 34.426 305 161 7 116 417 5 273 5.23e-49 178
Msa0478010 MtrunA17_Chr8g0390211 34.754 305 160 7 116 417 5 273 9.13e-48 174
Msa0478010 MtrunA17_Chr1g0167261 34.951 309 160 7 114 417 4 276 1.12e-47 172
Msa0478010 MtrunA17_Chr3g0140071 33.443 305 164 7 116 417 5 273 1.23e-47 174
Msa0478010 MtrunA17_Chr6g0486611 33.779 299 161 7 122 417 9 273 2.25e-47 173
Msa0478010 MtrunA17_Chr1g0146151 33.981 309 164 8 112 417 2 273 3.38e-47 172
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0478010 AT2G25760.1 72.867 715 141 9 1 704 1 673 0.0 1066
Msa0478010 AT2G25760.2 72.284 718 143 10 1 704 1 676 0.0 1055
Msa0478010 AT3G13670.1 67.458 716 187 9 1 704 22 703 0.0 992
Msa0478010 AT3G03940.1 72.285 617 140 2 92 703 110 700 0.0 958
Msa0478010 AT5G18190.2 71.178 628 148 3 83 703 89 690 0.0 954
Msa0478010 AT5G18190.1 71.178 628 148 3 83 703 89 690 0.0 954
Msa0478010 AT3G03930.1 69.388 245 74 1 460 703 43 287 4.86e-121 363
Msa0478010 AT1G03930.1 36.156 307 157 7 114 417 3 273 4.20e-53 191
Msa0478010 AT4G26100.1 35.786 299 155 6 122 417 9 273 1.60e-52 188
Msa0478010 AT3G23340.1 36.393 305 155 7 116 417 5 273 1.76e-52 188
Msa0478010 AT5G44100.1 34.853 307 161 7 114 417 3 273 5.72e-52 187
Msa0478010 AT5G44100.2 34.853 307 161 7 114 417 3 273 5.72e-52 187
Msa0478010 AT2G19470.1 36.120 299 154 6 122 417 9 273 7.39e-52 186
Msa0478010 AT4G14340.2 36.066 305 156 7 116 417 11 279 2.97e-51 182
Msa0478010 AT4G14340.1 36.066 305 156 7 116 417 11 279 4.09e-51 184
Msa0478010 AT1G72710.1 35.786 299 154 7 122 417 9 272 1.08e-50 184
Msa0478010 AT5G57015.1 35.117 299 157 6 122 417 9 273 1.61e-50 182
Msa0478010 AT5G43320.1 36.066 305 156 7 116 417 5 273 1.96e-50 183
Msa0478010 AT5G43320.2 36.066 305 156 7 116 417 5 273 1.27e-49 178
Msa0478010 AT5G43320.3 36.066 305 156 7 116 417 5 273 1.27e-49 178
Msa0478010 AT4G28540.1 34.754 305 160 7 116 417 9 277 1.31e-49 181
Msa0478010 AT4G28860.2 34.754 305 160 7 116 417 5 273 2.02e-49 178
Msa0478010 AT1G04440.1 35.082 305 159 7 116 417 5 273 2.49e-49 180
Msa0478010 AT4G28860.1 34.754 305 160 7 116 417 5 273 5.84e-49 177
Msa0478010 AT4G28880.3 35.082 305 159 7 116 417 5 273 8.82e-49 177
Msa0478010 AT4G28880.2 35.082 305 159 7 116 417 5 273 8.82e-49 177
Msa0478010 AT4G28880.1 35.082 305 159 7 116 417 5 273 8.82e-49 177
Msa0478010 AT4G28880.4 35.082 305 159 7 116 417 5 273 8.82e-49 177
Msa0478010 AT3G23340.2 35.540 287 148 6 134 417 7 259 1.20e-45 169
Msa0478010 AT4G08800.1 31.104 299 137 7 122 417 9 241 1.63e-37 142

Find 221 sgRNAs with CRISPR-Local

Find 422 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTATGCTACACCTTTCTTTA+TGG 0.140701 3_3:+82492298 Msa0478010:three_prime_UTR
AATGCACCAACCTATGTATT+TGG 0.203168 3_3:+82492765 Msa0478010:three_prime_UTR
TCTGAGCACCCTCGGTATTT+AGG 0.209029 3_3:-82490707 None:intergenic
CCCATTCGGACCTTCTTCTT+TGG 0.219272 3_3:-82490887 None:intergenic
GACCCACAATTCCATCAAAA+AGG 0.232071 3_3:-82490665 None:intergenic
TTTGAAAATAATACAGTATA+TGG 0.236549 3_3:-82492744 None:intergenic
CTGAGCACCCTCGGTATTTA+GGG 0.247642 3_3:-82490706 None:intergenic
CTTTCCCAACACATTGTAAA+AGG 0.251961 3_3:+82491073 Msa0478010:CDS
TGGCTTCTTGTGCTAGTCTT+TGG 0.253271 3_3:+82491125 Msa0478010:CDS
AAGCTTGGGAAGGGAGGATT+TGG 0.257494 3_3:+82487957 Msa0478010:CDS
TGTTTCACAGGAATGGATTA+TGG 0.259630 3_3:+82491341 Msa0478010:intron
CTTCTGCCTCCGATTCCTTC+TGG 0.270294 3_3:-82487459 None:intergenic
AAACGAGTCACTGACTTTAT+AGG 0.282911 3_3:-82491598 None:intergenic
GGCTTCTTGTGCTAGTCTTT+GGG 0.284395 3_3:+82491126 Msa0478010:CDS
GGCTCCTCAATGTCTGAATT+TGG 0.290706 3_3:+82492615 Msa0478010:three_prime_UTR
ATATGCTTGGCTCTAGTCTA+TGG 0.295213 3_3:+82488618 Msa0478010:CDS
TGGCCACTGCTGGCACTAGA+TGG 0.300589 3_3:+82491673 Msa0478010:CDS
TATAGGATTGTTGCATGTAT+TGG 0.306085 3_3:-82491581 None:intergenic
GCTCAAAACCTTTGTTTCAT+TGG 0.309003 3_3:-82490953 None:intergenic
TAAGAAGAAGGCAGTGGTTA+GGG 0.314293 3_3:+82487583 Msa0478010:CDS
AGGGGCCTAATGTCAGGATT+TGG 0.316161 3_3:-82490687 None:intergenic
GCTCTAGTCTATGGGATGTT+TGG 0.316967 3_3:+82488627 Msa0478010:CDS
TTCGGCTCCCGGAGCTTTAT+CGG 0.329884 3_3:-82487654 None:intergenic
GGGAACTGGGTGCTATAAAT+AGG 0.330573 3_3:+82492538 Msa0478010:three_prime_UTR
ATAGGATTGTTGCATGTATT+GGG 0.335579 3_3:-82491580 None:intergenic
TTTCTGGTTGATCTTGGATT+AGG 0.337171 3_3:+82489920 Msa0478010:CDS
ACCAACCTTGTGAAGAAAAC+TGG 0.342759 3_3:-82491203 None:intergenic
TAGTCTTTGGGCACTCATTA+TGG 0.347322 3_3:+82491138 Msa0478010:CDS
GTGAATAACGACGACGAAAC+AGG 0.354236 3_3:+82487527 Msa0478010:CDS
TGGGAGAACAGTTTCATAAA+TGG 0.360026 3_3:+82492138 Msa0478010:exon
ACACTAATCCACTGTGTTGC+TGG 0.363197 3_3:-82490914 None:intergenic
GTTACCTTGGCAAGGATATC+AGG 0.363733 3_3:+82490383 Msa0478010:CDS
TTCCTATCTAATCTATATAA+TGG 0.369860 3_3:-82487936 None:intergenic
CTCCCTTCTTCTTCGGCTCC+CGG 0.370094 3_3:-82487665 None:intergenic
TTGTTACAGGGAGAAAATAA+AGG 0.383335 3_3:+82490504 Msa0478010:intron
CTCATTATGGATGCTGGCAC+TGG 0.386456 3_3:+82491151 Msa0478010:CDS
GCAAGGTGCCTACTACATTA+TGG 0.390148 3_3:+82488507 Msa0478010:CDS
AACAGTAATTATTATGTTGA+AGG 0.391003 3_3:+82492457 Msa0478010:three_prime_UTR
AACAGCAAAGGGTGCAATTA+CGG 0.391275 3_3:+82488310 Msa0478010:CDS
TATAGATTAGATAGGAAGCT+TGG 0.395411 3_3:+82487942 Msa0478010:CDS
TATATCGCATCTATTAGTTA+TGG 0.395955 3_3:+82492118 Msa0478010:CDS
ATAAGAAGAAGGCAGTGGTT+AGG 0.397165 3_3:+82487582 Msa0478010:CDS
AACTTCTTGCTTGGACCCTC+GGG 0.405644 3_3:+82489875 Msa0478010:CDS
CGCCGCCGGTCGCCGGCGGG+AGG 0.407045 3_3:+82487408 Msa0478010:CDS
GGAATCAAAATCACCTTCTC+AGG 0.410551 3_3:-82487701 None:intergenic
ACGCGCCGCCGGTCGCCGGC+GGG 0.411110 3_3:+82487405 Msa0478010:CDS
GTGACTCGTTTCCATTTAAG+TGG 0.412212 3_3:+82491610 Msa0478010:CDS
AGTTGTACTCCCTTCTTCTT+CGG 0.412608 3_3:-82487672 None:intergenic
TCAATGTCTGAATTTGGCCT+TGG 0.421015 3_3:+82492621 Msa0478010:three_prime_UTR
AAGTTGTTTCTGGTTGATCT+TGG 0.425523 3_3:+82489914 Msa0478010:CDS
CTCCATTATATAGATTAGAT+AGG 0.426261 3_3:+82487934 Msa0478010:CDS
ATATCGCATCTATTAGTTAT+GGG 0.426501 3_3:+82492119 Msa0478010:CDS
ATTGTTATGTCCCGTGGTGC+TGG 0.431009 3_3:+82491699 Msa0478010:CDS
CGACGCGTAGGAGCTGGTTC+TGG 0.431637 3_3:+82487996 Msa0478010:CDS
AAACTTCTTGCTTGGACCCT+CGG 0.431706 3_3:+82489874 Msa0478010:CDS
GATAGGAAGCTTGGGAAGGG+AGG 0.432226 3_3:+82487951 Msa0478010:CDS
TTCTTCGTGGTCGGTTACCT+TGG 0.433456 3_3:+82490370 Msa0478010:CDS
CAAAAGCAACACAAAGCTTC+GGG 0.436504 3_3:-82490561 None:intergenic
AACGCGCCGCCGGTCGCCGG+CGG 0.437647 3_3:+82487404 Msa0478010:CDS
CCTTCTGGTCTGTGCGGCGG+TGG 0.439587 3_3:-82487444 None:intergenic
GTCACTGCTATGGCCACTGC+TGG 0.440107 3_3:+82491663 Msa0478010:CDS
TGGGTCCAAATCCTGACATT+AGG 0.442025 3_3:+82490682 Msa0478010:CDS
AGCGTTTCTTGAGTTTCATC+AGG 0.442256 3_3:-82491959 None:intergenic
ACGCTTGTCTTCCTTCTTCG+TGG 0.445559 3_3:+82490357 Msa0478010:CDS
ACAAAAGCAACACAAAGCTT+CGG 0.446009 3_3:-82490562 None:intergenic
AAAATAAAAGCAGCTTGATC+AGG 0.446910 3_3:-82491914 None:intergenic
AAGCCTGAAAACTTCTTGCT+TGG 0.452042 3_3:+82489866 Msa0478010:CDS
GTATTTAGGGGCCTAATGTC+AGG 0.452090 3_3:-82490693 None:intergenic
CGTTGGCGTGATAGTTCAAC+TGG 0.453748 3_3:+82490025 Msa0478010:CDS
ATCTAGGATGTCTACTGAAA+TGG 0.454067 3_3:+82488763 Msa0478010:intron
CTGTGCGGCGGTGGCAGCGA+CGG 0.454161 3_3:-82487435 None:intergenic
TTTACCTTAACATGAGTACT+AGG 0.455799 3_3:-82491998 None:intergenic
TATTACATCAGTGCCATAGC+TGG 0.456706 3_3:+82491381 Msa0478010:CDS
GTTGGCCGACGCGTAGGAGC+TGG 0.466210 3_3:+82487990 Msa0478010:CDS
AAAATCACCTTCTCAGGAAG+TGG 0.470398 3_3:-82487695 None:intergenic
CTCCTCCCGCCGGCGACCGG+CGG 0.471128 3_3:-82487410 None:intergenic
GCTCTCCTCCCGCCGGCGAC+CGG 0.471790 3_3:-82487413 None:intergenic
TGGGCACTCATTATGGATGC+TGG 0.472875 3_3:+82491145 Msa0478010:CDS
AGCTAGTAACGGGTCCTCAT+TGG 0.474983 3_3:+82491404 Msa0478010:CDS
CGAGGTCGGGTACGCAACTC+AGG 0.476552 3_3:-82487362 None:intergenic
GATAACGCGCCGCCGGTCGC+CGG 0.478774 3_3:+82487401 Msa0478010:CDS
TCATTGGTTGTAATGTCAAA+AGG 0.480800 3_3:+82491420 Msa0478010:CDS
AGCTTGGGAAGGGAGGATTT+GGG 0.483807 3_3:+82487958 Msa0478010:CDS
CTACATATTCTACAAACTGC+CGG 0.484853 3_3:-82490596 None:intergenic
AACTAATAGATGCGATATAG+AGG 0.485124 3_3:-82492114 None:intergenic
ATTGTAAAAGGAAATGAAGA+TGG 0.488040 3_3:+82491085 Msa0478010:CDS
GGAAGACAAGCGTGTAAGCA+AGG 0.490386 3_3:-82490347 None:intergenic
ATAGATTAGATAGGAAGCTT+GGG 0.491550 3_3:+82487943 Msa0478010:CDS
CCGCACAGACCAGAAGGAAT+CGG 0.493586 3_3:+82487450 Msa0478010:CDS
CTCTGTAAATCCAGCACCAC+GGG 0.494784 3_3:-82491709 None:intergenic
TTCATCATCATCCTCTTCCA+TGG 0.494964 3_3:-82490861 None:intergenic
TAGGTCAAAATCATATCAGC+TGG 0.495543 3_3:-82492179 None:intergenic
GTGTTGCTGGCTGACCCATT+CGG 0.496471 3_3:-82490901 None:intergenic
ATTGACAATGAAAGCATCAA+AGG 0.497939 3_3:-82489963 None:intergenic
TTAGATAGGAAGCTTGGGAA+GGG 0.503149 3_3:+82487948 Msa0478010:CDS
CGTAGTGCCGATAAAGCTCC+GGG 0.503731 3_3:+82487647 Msa0478010:CDS
GCTCCGGGAGCCGAAGAAGA+AGG 0.504739 3_3:+82487662 Msa0478010:CDS
CCGTAGTGCCGATAAAGCTC+CGG 0.505206 3_3:+82487646 Msa0478010:CDS
ATTACGCTATTACAAACTGC+TGG 0.506619 3_3:-82492666 None:intergenic
CTTGCCTACACATCTGAGTT+GGG 0.508086 3_3:+82492216 Msa0478010:three_prime_UTR
GGAAGGAGAGAATAAGAAGA+AGG 0.510183 3_3:+82487571 Msa0478010:CDS
CCATAGCTGGAGCTAGTAAC+GGG 0.513636 3_3:+82491394 Msa0478010:CDS
AAATAGGCCTACCTTGTACT+TGG 0.514239 3_3:+82492554 Msa0478010:three_prime_UTR
ATTAGATAGGAAGCTTGGGA+AGG 0.514540 3_3:+82487947 Msa0478010:CDS
ATTCTACAAGAAATTTATCA+TGG 0.514722 3_3:-82492252 None:intergenic
TTGTCTTCCTTCTTCGTGGT+CGG 0.524778 3_3:+82490361 Msa0478010:CDS
GCTATGGATGAGTACGATAG+TGG 0.525051 3_3:+82487620 Msa0478010:CDS
TTATAGCACCCAGTTCCCGC+TGG 0.526461 3_3:-82492533 None:intergenic
TGTAGAATGCAGTTCAGCAT+TGG 0.526609 3_3:+82492267 Msa0478010:three_prime_UTR
CTTCGATGAATACCTTCACT+AGG 0.528484 3_3:-82491851 None:intergenic
TAGCTTTAAATCAAGAGGTA+AGG 0.529304 3_3:-82492586 None:intergenic
TTCTCATCAGGGGTTCCCGA+GGG 0.529311 3_3:-82489890 None:intergenic
GCTTGCCTACACATCTGAGT+TGG 0.529392 3_3:+82492215 Msa0478010:three_prime_UTR
GGATTTGGGCAAGTCTATGT+TGG 0.531558 3_3:+82487972 Msa0478010:CDS
GAATACCTTCACTAGGGTAC+AGG 0.532543 3_3:-82491844 None:intergenic
CCAAAGAAGAAGGTCCGAAT+GGG 0.533192 3_3:+82490887 Msa0478010:CDS
TAATTACAGATTCAAGTTGG+TGG 0.534253 3_3:+82487909 Msa0478010:intron
ATGATGACAACCATAAAGAA+AGG 0.534545 3_3:-82492308 None:intergenic
AGGACGATTGACCATGGAAG+AGG 0.534909 3_3:+82490850 Msa0478010:CDS
ATTACGGACCTCCACATGAA+TGG 0.537264 3_3:+82488326 Msa0478010:CDS
TCTTAATTACAGATTCAAGT+TGG 0.538540 3_3:+82487906 Msa0478010:intron
ACAAACTGCCGGAAAGGTGC+AGG 0.538874 3_3:-82490585 None:intergenic
TATGCTTGGCTCTAGTCTAT+GGG 0.539645 3_3:+82488619 Msa0478010:CDS
AGCTGGTTCTGGTGCCGTTG+AGG 0.543472 3_3:+82488007 Msa0478010:CDS
AGCACATACCATAATGTAGT+AGG 0.544663 3_3:-82488515 None:intergenic
GGTTTCTAGAGAGGAAGCTA+TGG 0.545782 3_3:+82487604 Msa0478010:intron
AAGAAACCAAATACATAGGT+TGG 0.545816 3_3:-82492771 None:intergenic
GAGACGGTTTATGCGAGGTC+GGG 0.546267 3_3:-82487375 None:intergenic
CGGACCTCCACATGAATGGC+AGG 0.546511 3_3:+82488330 Msa0478010:CDS
TGGTGCTGGATTTACAGAGC+AGG 0.546908 3_3:+82491713 Msa0478010:CDS
GAGAGATTGAAAGAAGAGGA+AGG 0.548043 3_3:+82487554 Msa0478010:CDS
GGCCACTGCTGGCACTAGAT+GGG 0.549197 3_3:+82491674 Msa0478010:CDS
AGAGAATAAGAAGAAGGCAG+TGG 0.549582 3_3:+82487577 Msa0478010:CDS
AAGGTAACCGACCACGAAGA+AGG 0.552994 3_3:-82490368 None:intergenic
GTGAAGGTATTCATCGAAGG+TGG 0.556433 3_3:+82491855 Msa0478010:CDS
TTTCTCATCAGGGGTTCCCG+AGG 0.557461 3_3:-82489891 None:intergenic
CTCCGGGAGCCGAAGAAGAA+GGG 0.558776 3_3:+82487663 Msa0478010:CDS
TGAGCACCCTCGGTATTTAG+GGG 0.558929 3_3:-82490705 None:intergenic
ACTCAGATGTGTAGGCAAGC+GGG 0.559158 3_3:-82492212 None:intergenic
TGATGAACAACCAAAGAAGA+AGG 0.560213 3_3:+82490877 Msa0478010:CDS
TTGACAATGAAAGCATCAAA+GGG 0.560574 3_3:-82489962 None:intergenic
AGGAATGGATTATGGAACAG+TGG 0.562856 3_3:+82491349 Msa0478010:intron
CGTGGTCGGTTACCTTGGCA+AGG 0.564377 3_3:+82490375 Msa0478010:CDS
ATTCAGACATTGAGGAGCCT+CGG 0.564430 3_3:-82492611 None:intergenic
AAATACCGAGGGTGCTCAGA+AGG 0.565005 3_3:+82490710 Msa0478010:CDS
CACGAGTACATTACAAGGGA+CGG 0.566096 3_3:+82488485 Msa0478010:CDS
AGTAGAGAGATTGAAAGAAG+AGG 0.566314 3_3:+82487550 Msa0478010:CDS
GGATAAAAGAGCCAAGTACA+AGG 0.566325 3_3:-82492565 None:intergenic
GCTAGTGTGCATGCACATCT+TGG 0.567152 3_3:+82490291 Msa0478010:CDS
GAAAGCATCAAAGGGTAACA+TGG 0.567495 3_3:-82489954 None:intergenic
AAGTAGCAGGAGAGATGACT+TGG 0.570146 3_3:+82490320 Msa0478010:CDS
TAGAGAAGATGCATTGTAGA+GGG 0.572443 3_3:+82488819 Msa0478010:CDS
CCACCGCCGCACAGACCAGA+AGG 0.573426 3_3:+82487444 Msa0478010:CDS
ACCAAAGAAGAAGGTCCGAA+TGG 0.576715 3_3:+82490886 Msa0478010:CDS
CGGAGTAGCTTTAAATCAAG+AGG 0.576803 3_3:-82492591 None:intergenic
TATTCTACAAACTGCCGGAA+AGG 0.578047 3_3:-82490591 None:intergenic
GTTTCTTGAGTTTCATCAGG+TGG 0.578812 3_3:-82491956 None:intergenic
ACACAAAGCTTCGGGTGAAG+TGG 0.580070 3_3:-82490553 None:intergenic
ACACAGGTCATGGATATGCT+TGG 0.581027 3_3:+82488605 Msa0478010:intron
GCCATAGCTGGAGCTAGTAA+CGG 0.586802 3_3:+82491393 Msa0478010:CDS
TGTTCCACGAGTACATTACA+AGG 0.586861 3_3:+82488480 Msa0478010:CDS
GGAATGGATTATGGAACAGT+GGG 0.588580 3_3:+82491350 Msa0478010:intron
GTCTATGTTGGCCGACGCGT+AGG 0.589738 3_3:+82487984 Msa0478010:CDS
TACAACTCCACTTCCTGAGA+AGG 0.591492 3_3:+82487688 Msa0478010:CDS
GTGTTGGGAAAGCCGCTCAT+CGG 0.591532 3_3:-82491062 None:intergenic
ATCTTGGTAGAACAAGTAGC+AGG 0.592624 3_3:+82490307 Msa0478010:CDS
AGTTCCCAACTCAGATGTGT+AGG 0.592708 3_3:-82492220 None:intergenic
TTAGAGAAGATGCATTGTAG+AGG 0.593386 3_3:+82488818 Msa0478010:CDS
AACTCAGATGTGTAGGCAAG+CGG 0.596134 3_3:-82492213 None:intergenic
TGAGACGGTTTATGCGAGGT+CGG 0.596794 3_3:-82487376 None:intergenic
AGCACATTAGGTGGTAGTCA+TGG 0.600563 3_3:+82488457 Msa0478010:intron
TCTCACTGATAACGCGCCGC+CGG 0.600651 3_3:+82487394 Msa0478010:CDS
AGCGACGGCTCTCCTCCCGC+CGG 0.600658 3_3:-82487420 None:intergenic
ATAACCTGATATCCTTGCCA+AGG 0.602758 3_3:-82490387 None:intergenic
AAAAGAGCCAAGTACAAGGT+AGG 0.604138 3_3:-82492561 None:intergenic
AAGGCCAAATTCAGACATTG+AGG 0.604160 3_3:-82492619 None:intergenic
GTTGATCATAATCAACATGA+AGG 0.605161 3_3:-82490048 None:intergenic
TTGTAATAGCGTAATCATTG+TGG 0.606706 3_3:+82492674 Msa0478010:three_prime_UTR
GATTTCCTGTACCCTAGTGA+AGG 0.606757 3_3:+82491839 Msa0478010:CDS
CACAGACCAGAAGGAATCGG+AGG 0.609955 3_3:+82487453 Msa0478010:CDS
TGAAGGTATTCATCGAAGGT+GGG 0.610628 3_3:+82491856 Msa0478010:CDS
CTCGTAGACCAATGAAACAA+AGG 0.611155 3_3:+82490945 Msa0478010:CDS
TTGTAAACCTGCCATTCATG+TGG 0.611605 3_3:-82488337 None:intergenic
TAGGATGTCTACTGAAATGG+TGG 0.612266 3_3:+82488766 Msa0478010:intron
TTGAGCATAGAAACAGCAAA+GGG 0.612579 3_3:+82488299 Msa0478010:CDS
CCCGTTACTAGCTCCAGCTA+TGG 0.614186 3_3:-82491394 None:intergenic
TTTGAGCATAGAAACAGCAA+AGG 0.615974 3_3:+82488298 Msa0478010:CDS
AAGTACCTTCTGAGCACCCT+CGG 0.619914 3_3:-82490715 None:intergenic
CCCAAAGAAACCAAATACAT+AGG 0.620931 3_3:-82492775 None:intergenic
AAAGAGAGGACGATTGACCA+TGG 0.622958 3_3:+82490844 Msa0478010:CDS
ATTCCTTCTGGTCTGTGCGG+CGG 0.623393 3_3:-82487447 None:intergenic
TTCGATGAATACCTTCACTA+GGG 0.624580 3_3:-82491850 None:intergenic
CGTCCCTTGTAATGTACTCG+TGG 0.624983 3_3:-82488484 None:intergenic
GGTGGCATGTATTGCAATCG+AGG 0.627258 3_3:+82488784 Msa0478010:CDS
CCGGAGCTTTATCGGCACTA+CGG 0.627559 3_3:-82487646 None:intergenic
TAAACCTGCCATTCATGTGG+AGG 0.628206 3_3:-82488334 None:intergenic
GTACATTACAAGGGACGGCA+AGG 0.629460 3_3:+82488490 Msa0478010:CDS
ATTACAATGTGGCCGATGAG+CGG 0.631315 3_3:+82491050 Msa0478010:CDS
TGCCCATCTAGTGCCAGCAG+TGG 0.632198 3_3:-82491676 None:intergenic
GCGGCGCGTTATCAGTGAGA+CGG 0.633560 3_3:-82487391 None:intergenic
TGTTGTTGCAGATATGTGCA+TGG 0.634497 3_3:+82489836 Msa0478010:intron
GAAGACAAGCGTGTAAGCAA+GGG 0.638778 3_3:-82490346 None:intergenic
TTGCAGCAGTTGCAGTAATG+CGG 0.640610 3_3:-82491889 None:intergenic
CTAGTGAAGGTATTCATCGA+AGG 0.644295 3_3:+82491852 Msa0478010:CDS
TGGGCAATTGTTATGTCCCG+TGG 0.648130 3_3:+82491693 Msa0478010:CDS
TACTAGGAAAATCAGACGTG+CGG 0.651938 3_3:-82491982 None:intergenic
TGGTTTATTTATTAGCAGTG+TGG 0.653080 3_3:+82491105 Msa0478010:CDS
AAACACCGTACATACCTCAA+CGG 0.667251 3_3:-82488021 None:intergenic
TGTCAGGTTGGACAAAAGAG+AGG 0.668670 3_3:+82490830 Msa0478010:intron
ATGGATGAGTACGATAGTGG+TGG 0.670453 3_3:+82487623 Msa0478010:CDS
CAGAACCAGCTCCTACGCGT+CGG 0.671406 3_3:-82487995 None:intergenic
GCTCTGTAAATCCAGCACCA+CGG 0.673158 3_3:-82491710 None:intergenic
CATTAGGCCCCTAAATACCG+AGG 0.680909 3_3:+82490698 Msa0478010:CDS
TCAGTGAGACGGTTTATGCG+AGG 0.681265 3_3:-82487380 None:intergenic
CTACAAGAAATTTATCATGG+AGG 0.683620 3_3:-82492249 None:intergenic
ATTAGGCCCCTAAATACCGA+GGG 0.697940 3_3:+82490699 Msa0478010:CDS
TGGGTCAGCCAGCAACACAG+TGG 0.714696 3_3:+82490906 Msa0478010:CDS
GCGTAGGTATCATTACAATG+TGG 0.721199 3_3:+82491039 Msa0478010:intron
GTTCCACGAGTACATTACAA+GGG 0.736863 3_3:+82488481 Msa0478010:CDS
CTTGATTTAAAGCTACTCCG+AGG 0.740070 3_3:+82492594 Msa0478010:three_prime_UTR
CCGATTCCTTCTGGTCTGTG+CGG 0.742167 3_3:-82487450 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTTTAATTTTGTAA+GGG + chr3_3:82488096-82488115 Msa0478010:intron 10.0%
!! AAAAAACTTTATAAAATGTA+AGG + chr3_3:82488146-82488165 Msa0478010:intron 10.0%
!! AAAAACTTTATAAAATGTAA+GGG + chr3_3:82488147-82488166 Msa0478010:intron 10.0%
!!! TAAGTTTTTTAATAAAGTAA+TGG + chr3_3:82488540-82488559 Msa0478010:intron 10.0%
!!! AAGTTTTTTAATAAAGTAAT+GGG + chr3_3:82488541-82488560 Msa0478010:intron 10.0%
!! ATAATAAATATAATATAACC+AGG - chr3_3:82488858-82488877 None:intergenic 10.0%
!! TTATTTATGCAAAAATAAAT+CGG + chr3_3:82489068-82489087 Msa0478010:intron 10.0%
!!! CTGAATTTTTTAATTTTGTA+AGG + chr3_3:82488095-82488114 Msa0478010:intron 15.0%
!!! TTGTTACATAATATTTTAGT+TGG + chr3_3:82488119-82488138 Msa0478010:intron 15.0%
!!! AGTTTTTTAATAAAGTAATG+GGG + chr3_3:82488542-82488561 Msa0478010:intron 15.0%
!!! CATATTTTTTGTAAATGTTT+TGG + chr3_3:82488704-82488723 Msa0478010:intron 15.0%
!!! ATCTATTATATTTCTAACAT+TGG - chr3_3:82489730-82489749 None:intergenic 15.0%
!!! TACATACATTGATTTAAATA+AGG - chr3_3:82490217-82490236 None:intergenic 15.0%
!! TATTTAAATCAATGTATGTA+TGG + chr3_3:82490217-82490236 Msa0478010:intron 15.0%
!!! TAATTATTTTTGTTTGATGA+TGG + chr3_3:82492482-82492501 Msa0478010:three_prime_UTR 15.0%
!! TTTGAAAATAATACAGTATA+TGG - chr3_3:82492747-82492766 None:intergenic 15.0%
!! TTCCTATCTAATCTATATAA+TGG - chr3_3:82487939-82487958 None:intergenic 20.0%
!!! GTTTTTTAATAAAGTAATGG+GGG + chr3_3:82488543-82488562 Msa0478010:intron 20.0%
!!! TTTTACTAAATTAAGTGTTG+TGG + chr3_3:82489161-82489180 Msa0478010:intron 20.0%
!! AAGAACAAAAACAAATTTGA+GGG - chr3_3:82489637-82489656 None:intergenic 20.0%
!! NNNNNNACCTAAATACATCT+GGG - chr3_3:82490075-82490094 None:intergenic 20.0%
!! NNNNNNNACCTAAATACATC+TGG - chr3_3:82490076-82490095 None:intergenic 20.0%
!!! TTATGAAATTGTTTGTTACA+GGG + chr3_3:82490492-82490511 Msa0478010:intron 20.0%
!!! GATATGTATTTTGCATAATT+TGG - chr3_3:82490645-82490664 None:intergenic 20.0%
!! TACATGTGTTATATCATTTA+AGG + chr3_3:82490753-82490772 Msa0478010:intron 20.0%
!! AAATATAGAAAGTCAAAACT+GGG - chr3_3:82491017-82491036 None:intergenic 20.0%
!! AAAATATAGAAAGTCAAAAC+TGG - chr3_3:82491018-82491037 None:intergenic 20.0%
!!! AGTTTTGACTTTCTATATTT+TGG + chr3_3:82491017-82491036 Msa0478010:intron 20.0%
!! TCTTGATGCATTATATATTT+AGG + chr3_3:82491455-82491474 Msa0478010:intron 20.0%
!!! TATTTGATATATATTTCTGC+AGG + chr3_3:82492075-82492094 Msa0478010:intron 20.0%
!! ATTCTACAAGAAATTTATCA+TGG - chr3_3:82492255-82492274 None:intergenic 20.0%
!! AACAGTAATTATTATGTTGA+AGG + chr3_3:82492457-82492476 Msa0478010:three_prime_UTR 20.0%
!! GATAATTTTTGTCATGTGTT+AGG + chr3_3:82487861-82487880 Msa0478010:intron 25.0%
! TCTTAATTACAGATTCAAGT+TGG + chr3_3:82487906-82487925 Msa0478010:intron 25.0%
! CTCCATTATATAGATTAGAT+AGG + chr3_3:82487934-82487953 Msa0478010:CDS 25.0%
!!! TCTAACCTTAGTTCTTTTTT+CGG + chr3_3:82488740-82488759 Msa0478010:intron 25.0%
! TTTACTAACAGATTGTCTAT+GGG + chr3_3:82488894-82488913 Msa0478010:intron 25.0%
! TTATGCAAAAATAAATCGGT+TGG + chr3_3:82489072-82489091 Msa0478010:intron 25.0%
! TATGCAAAAATAAATCGGTT+GGG + chr3_3:82489073-82489092 Msa0478010:intron 25.0%
! ATTTGATTGAGATACAGTAA+TGG - chr3_3:82489434-82489453 None:intergenic 25.0%
! TATCATTCTGTGATTATGAT+AGG + chr3_3:82489459-82489478 Msa0478010:intron 25.0%
! ATCATTCTGTGATTATGATA+GGG + chr3_3:82489460-82489479 Msa0478010:intron 25.0%
! GAAGAACAAAAACAAATTTG+AGG - chr3_3:82489638-82489657 None:intergenic 25.0%
!! ATCAATGTATGTATGGTTTT+TGG + chr3_3:82490224-82490243 Msa0478010:intron 25.0%
! GATTCTGTATATCATATTCT+TGG + chr3_3:82490249-82490268 Msa0478010:intron 25.0%
!! CTTATGAAATTGTTTGTTAC+AGG + chr3_3:82490491-82490510 Msa0478010:intron 25.0%
!! AAATACATATCCCTTTTTGA+TGG + chr3_3:82490654-82490673 Msa0478010:CDS 25.0%
!! ATTTCCTTTTACAATGTGTT+GGG - chr3_3:82491080-82491099 None:intergenic 25.0%
! ATTGTAAAAGGAAATGAAGA+TGG + chr3_3:82491085-82491104 Msa0478010:CDS 25.0%
! GATGCATTATATATTTAGGA+TGG + chr3_3:82491459-82491478 Msa0478010:intron 25.0%
!! TTTTTGTTGATCCACTTAAA+TGG - chr3_3:82491624-82491643 None:intergenic 25.0%
! TTAAGTGGATCAACAAAAAA+TGG + chr3_3:82491625-82491644 Msa0478010:CDS 25.0%
! ACAATGAATACATGAAAATC+AGG - chr3_3:82492032-82492051 None:intergenic 25.0%
!! ATATATTTCTGCAGGAAAAA+TGG + chr3_3:82492083-82492102 Msa0478010:intron 25.0%
!! TATATTTCTGCAGGAAAAAT+GGG + chr3_3:82492084-82492103 Msa0478010:intron 25.0%
! TATATCGCATCTATTAGTTA+TGG + chr3_3:82492118-82492137 Msa0478010:CDS 25.0%
! ATATCGCATCTATTAGTTAT+GGG + chr3_3:82492119-82492138 Msa0478010:CDS 25.0%
!! TTAGATCTTTTGTGTCAATT+GGG + chr3_3:82492400-82492419 Msa0478010:three_prime_UTR 25.0%
! CACAATGTTTTCGATTTTCT+CGG - chr3_3:82487510-82487529 None:intergenic 30.0%
!! TAATTACAGATTCAAGTTGG+TGG + chr3_3:82487909-82487928 Msa0478010:intron 30.0%
TATAGATTAGATAGGAAGCT+TGG + chr3_3:82487942-82487961 Msa0478010:CDS 30.0%
ATAGATTAGATAGGAAGCTT+GGG + chr3_3:82487943-82487962 Msa0478010:CDS 30.0%
! ATTGATACATGTTGCCATTT+GGG + chr3_3:82488069-82488088 Msa0478010:intron 30.0%
AAAAAATTCAGACACCCAAA+TGG - chr3_3:82488086-82488105 None:intergenic 30.0%
ATAAAAGTCATAGATGCCTT+TGG - chr3_3:82488233-82488252 None:intergenic 30.0%
TTAATGCTACCTGCAATTAT+TGG - chr3_3:82488276-82488295 None:intergenic 30.0%
CTCTATTGAAACAGAAAAGA+GGG - chr3_3:82488372-82488391 None:intergenic 30.0%
ACTCTATTGAAACAGAAAAG+AGG - chr3_3:82488373-82488392 None:intergenic 30.0%
! TCTTTTCTGTTTCAATAGAG+TGG + chr3_3:82488372-82488391 Msa0478010:intron 30.0%
!!! CTCACTTTTTATAGCACATT+AGG + chr3_3:82488445-82488464 Msa0478010:intron 30.0%
! ACTTTTTATAGCACATTAGG+TGG + chr3_3:82488448-82488467 Msa0478010:intron 30.0%
TGTAACATAATGTTACACAC+AGG + chr3_3:82488589-82488608 Msa0478010:intron 30.0%
TAGATCCGAAAAAAGAACTA+AGG - chr3_3:82488748-82488767 None:intergenic 30.0%
!!! TTAGTTCTTTTTTCGGATCT+AGG + chr3_3:82488747-82488766 Msa0478010:intron 30.0%
CTTTACTAACAGATTGTCTA+TGG + chr3_3:82488893-82488912 Msa0478010:intron 30.0%
TTACTAACAGATTGTCTATG+GGG + chr3_3:82488895-82488914 Msa0478010:intron 30.0%
AACACCCAAATGATAACATA+AGG - chr3_3:82488942-82488961 None:intergenic 30.0%
!!! TAGTTTTTTTTTTTACCCCG+AGG + chr3_3:82489034-82489053 Msa0478010:intron 30.0%
AAATAAATGTTGCTCAACCT+CGG - chr3_3:82489054-82489073 None:intergenic 30.0%
! AAATTCTTCTGATTTAGCTC+TGG + chr3_3:82489111-82489130 Msa0478010:intron 30.0%
! TACTAAATTAAGTGTTGTGG+AGG + chr3_3:82489164-82489183 Msa0478010:intron 30.0%
! AGGTTTCTTTTTATCCAGTA+GGG + chr3_3:82489214-82489233 Msa0478010:intron 30.0%
TTTCTAACATTGGTATTGCA+TGG - chr3_3:82489720-82489739 None:intergenic 30.0%
!! AAACAACTTTTTCTCATCAG+GGG - chr3_3:82489903-82489922 None:intergenic 30.0%
!! GAAACAACTTTTTCTCATCA+GGG - chr3_3:82489904-82489923 None:intergenic 30.0%
!! AGAAACAACTTTTTCTCATC+AGG - chr3_3:82489905-82489924 None:intergenic 30.0%
! TGATGAGAAAAAGTTGTTTC+TGG + chr3_3:82489904-82489923 Msa0478010:CDS 30.0%
!! TTGACAATGAAAGCATCAAA+GGG - chr3_3:82489965-82489984 None:intergenic 30.0%
!! ATTGACAATGAAAGCATCAA+AGG - chr3_3:82489966-82489985 None:intergenic 30.0%
GTTGATCATAATCAACATGA+AGG - chr3_3:82490051-82490070 None:intergenic 30.0%
TGTATATCATATTCTTGGCA+GGG + chr3_3:82490254-82490273 Msa0478010:intron 30.0%
TTGTTACAGGGAGAAAATAA+AGG + chr3_3:82490504-82490523 Msa0478010:intron 30.0%
!! ATAAAAGGGCTTTAAGAGTA+TGG - chr3_3:82490787-82490806 None:intergenic 30.0%
! ATACTCTTAAAGCCCTTTTA+TGG + chr3_3:82490786-82490805 Msa0478010:intron 30.0%
! TACTCTTAAAGCCCTTTTAT+GGG + chr3_3:82490787-82490806 Msa0478010:intron 30.0%
! CATTTCCTTTTACAATGTGT+TGG - chr3_3:82491081-82491100 None:intergenic 30.0%
TGGTTTATTTATTAGCAGTG+TGG + chr3_3:82491105-82491124 Msa0478010:CDS 30.0%
AAATCATGAATCTGTTTCAC+AGG + chr3_3:82491329-82491348 Msa0478010:intron 30.0%
! TTTTGACATTACAACCAATG+AGG - chr3_3:82491421-82491440 None:intergenic 30.0%
! TCATTGGTTGTAATGTCAAA+AGG + chr3_3:82491420-82491439 Msa0478010:CDS 30.0%
AGATTTAAACACAACACTAC+TGG - chr3_3:82491520-82491539 None:intergenic 30.0%
ATAGGATTGTTGCATGTATT+GGG - chr3_3:82491583-82491602 None:intergenic 30.0%
TATAGGATTGTTGCATGTAT+TGG - chr3_3:82491584-82491603 None:intergenic 30.0%
AAAATAAAAGCAGCTTGATC+AGG - chr3_3:82491917-82491936 None:intergenic 30.0%
! TTTTCCTAGTACTCATGTTA+AGG + chr3_3:82491994-82492013 Msa0478010:CDS 30.0%
TTTACCTTAACATGAGTACT+AGG - chr3_3:82492001-82492020 None:intergenic 30.0%
AACTAATAGATGCGATATAG+AGG - chr3_3:82492117-82492136 None:intergenic 30.0%
CTACAAGAAATTTATCATGG+AGG - chr3_3:82492252-82492271 None:intergenic 30.0%
ATGATGACAACCATAAAGAA+AGG - chr3_3:82492311-82492330 None:intergenic 30.0%
! CTTAGATCTTTTGTGTCAAT+TGG + chr3_3:82492399-82492418 Msa0478010:three_prime_UTR 30.0%
! ATGCAACTAAAATTTTCCAG+CGG + chr3_3:82492517-82492536 Msa0478010:three_prime_UTR 30.0%
!! TAGCTTTAAATCAAGAGGTA+AGG - chr3_3:82492589-82492608 None:intergenic 30.0%
! TAAACAACTTTTTGTCACCA+AGG - chr3_3:82492641-82492660 None:intergenic 30.0%
TTGTAATAGCGTAATCATTG+TGG + chr3_3:82492674-82492693 Msa0478010:three_prime_UTR 30.0%
AGTAGAGAGATTGAAAGAAG+AGG + chr3_3:82487550-82487569 Msa0478010:CDS 35.0%
CTTCACTATGAACATTTCTC+AGG - chr3_3:82487725-82487744 None:intergenic 35.0%
ATGGCAACATGTATCAATCA+CGG - chr3_3:82488067-82488086 None:intergenic 35.0%
GATTGATACATGTTGCCATT+TGG + chr3_3:82488068-82488087 Msa0478010:intron 35.0%
GGAACAAATTTGTACACCAA+AGG + chr3_3:82488214-82488233 Msa0478010:intron 35.0%
GATATTGCTCCAATAATTGC+AGG + chr3_3:82488264-82488283 Msa0478010:intron 35.0%
TTTGAGCATAGAAACAGCAA+AGG + chr3_3:82488298-82488317 Msa0478010:CDS 35.0%
TTGAGCATAGAAACAGCAAA+GGG + chr3_3:82488299-82488318 Msa0478010:CDS 35.0%
TGTGCTATAAAAAGTGAGCA+TGG - chr3_3:82488443-82488462 None:intergenic 35.0%
AGCACATACCATAATGTAGT+AGG - chr3_3:82488518-82488537 None:intergenic 35.0%
ATAATGTTACACACAGGTCA+TGG + chr3_3:82488595-82488614 Msa0478010:intron 35.0%
! ATCTAGGATGTCTACTGAAA+TGG + chr3_3:82488763-82488782 Msa0478010:intron 35.0%
TTAGAGAAGATGCATTGTAG+AGG + chr3_3:82488818-82488837 Msa0478010:CDS 35.0%
TAGAGAAGATGCATTGTAGA+GGG + chr3_3:82488819-82488838 Msa0478010:CDS 35.0%
TCTCGCCTTATGTTATCATT+TGG + chr3_3:82488934-82488953 Msa0478010:intron 35.0%
CTCGCCTTATGTTATCATTT+GGG + chr3_3:82488935-82488954 Msa0478010:intron 35.0%
!!! TGTTCCGTTTTTTTACCTCA+TGG + chr3_3:82488958-82488977 Msa0478010:intron 35.0%
!!! GTTCCGTTTTTTTACCTCAT+GGG + chr3_3:82488959-82488978 Msa0478010:intron 35.0%
!!! TTCCGTTTTTTTACCTCATG+GGG + chr3_3:82488960-82488979 Msa0478010:intron 35.0%
TTCCCCATGAGGTAAAAAAA+CGG - chr3_3:82488965-82488984 None:intergenic 35.0%
AATAAATGTTGCTCAACCTC+GGG - chr3_3:82489053-82489072 None:intergenic 35.0%
! GAGGTTTCTTTTTATCCAGT+AGG + chr3_3:82489213-82489232 Msa0478010:intron 35.0%
GAACTAATGAGAAAACTGCA+GGG - chr3_3:82489295-82489314 None:intergenic 35.0%
TGAACTAATGAGAAAACTGC+AGG - chr3_3:82489296-82489315 None:intergenic 35.0%
TGTGATTATGATAGGGACTT+GGG + chr3_3:82489467-82489486 Msa0478010:intron 35.0%
AAGTCCCAAATCAAGTAGTA+TGG + chr3_3:82489505-82489524 Msa0478010:intron 35.0%
!!! GGGTGAGTATTTTAGTAGAT+TGG + chr3_3:82489534-82489553 Msa0478010:intron 35.0%
ATCCTAAAAGCTAGCTATCA+AGG - chr3_3:82489568-82489587 None:intergenic 35.0%
CAAAAACAAATTTGAGGGCA+TGG - chr3_3:82489632-82489651 None:intergenic 35.0%
ATTTACTAGTTGACCATTGC+AGG - chr3_3:82489666-82489685 None:intergenic 35.0%
!! AAGTTGTTTCTGGTTGATCT+TGG + chr3_3:82489914-82489933 Msa0478010:CDS 35.0%
!! TTTCTGGTTGATCTTGGATT+AGG + chr3_3:82489920-82489939 Msa0478010:CDS 35.0%
CTGTATATCATATTCTTGGC+AGG + chr3_3:82490253-82490272 Msa0478010:intron 35.0%
GTATATCATATTCTTGGCAG+GGG + chr3_3:82490255-82490274 Msa0478010:intron 35.0%
TCTTGTCTGCAAGAAAAAGA+TGG + chr3_3:82490530-82490549 Msa0478010:CDS 35.0%
ACAAAAGCAACACAAAGCTT+CGG - chr3_3:82490565-82490584 None:intergenic 35.0%
CTACATATTCTACAAACTGC+CGG - chr3_3:82490599-82490618 None:intergenic 35.0%
! ATCCCTTTTTGATGGAATTG+TGG + chr3_3:82490662-82490681 Msa0478010:CDS 35.0%
! TCCCTTTTTGATGGAATTGT+GGG + chr3_3:82490663-82490682 Msa0478010:CDS 35.0%
ACCCACAATTCCATCAAAAA+GGG - chr3_3:82490667-82490686 None:intergenic 35.0%
CACAACACAAACCCATAAAA+GGG - chr3_3:82490801-82490820 None:intergenic 35.0%
TCACAACACAAACCCATAAA+AGG - chr3_3:82490802-82490821 None:intergenic 35.0%
TGTTGTGAAGCTTATATGTC+AGG + chr3_3:82490814-82490833 Msa0478010:intron 35.0%
TGATGAACAACCAAAGAAGA+AGG + chr3_3:82490877-82490896 Msa0478010:CDS 35.0%
! GCTCAAAACCTTTGTTTCAT+TGG - chr3_3:82490956-82490975 None:intergenic 35.0%
!!! GACTTTCTATATTTTGGCGT+AGG + chr3_3:82491023-82491042 Msa0478010:intron 35.0%
CTTTCCCAACACATTGTAAA+AGG + chr3_3:82491073-82491092 Msa0478010:CDS 35.0%
ATGAATCTGTTTCACAGGAA+TGG + chr3_3:82491334-82491353 Msa0478010:intron 35.0%
!! TGTTTCACAGGAATGGATTA+TGG + chr3_3:82491341-82491360 Msa0478010:intron 35.0%
!! AAACGAGTCACTGACTTTAT+AGG - chr3_3:82491601-82491620 None:intergenic 35.0%
AGTGGATCAACAAAAAATGG+AGG + chr3_3:82491628-82491647 Msa0478010:CDS 35.0%
GTGGATCAACAAAAAATGGA+GGG + chr3_3:82491629-82491648 Msa0478010:CDS 35.0%
ATCAACAAAAAATGGAGGGA+AGG + chr3_3:82491633-82491652 Msa0478010:CDS 35.0%
!!! AGGATTTTTTGTCACTGCTA+TGG + chr3_3:82491653-82491672 Msa0478010:CDS 35.0%
TTCGATGAATACCTTCACTA+GGG - chr3_3:82491853-82491872 None:intergenic 35.0%
TGGGAGAACAGTTTCATAAA+TGG + chr3_3:82492138-82492157 Msa0478010:exon 35.0%
TAGGTCAAAATCATATCAGC+TGG - chr3_3:82492182-82492201 None:intergenic 35.0%
GTATGCTACACCTTTCTTTA+TGG + chr3_3:82492298-82492317 Msa0478010:three_prime_UTR 35.0%
! TGCAACTAAAATTTTCCAGC+GGG + chr3_3:82492518-82492537 Msa0478010:three_prime_UTR 35.0%
ATTACGCTATTACAAACTGC+TGG - chr3_3:82492669-82492688 None:intergenic 35.0%
GAGAGATTGAAAGAAGAGGA+AGG + chr3_3:82487554-82487573 Msa0478010:CDS 40.0%
GGAAGGAGAGAATAAGAAGA+AGG + chr3_3:82487571-82487590 Msa0478010:CDS 40.0%
AGAGAATAAGAAGAAGGCAG+TGG + chr3_3:82487577-82487596 Msa0478010:CDS 40.0%
ATAAGAAGAAGGCAGTGGTT+AGG + chr3_3:82487582-82487601 Msa0478010:CDS 40.0%
TAAGAAGAAGGCAGTGGTTA+GGG + chr3_3:82487583-82487602 Msa0478010:CDS 40.0%
AGTTGTACTCCCTTCTTCTT+CGG - chr3_3:82487675-82487694 None:intergenic 40.0%
AAAATCACCTTCTCAGGAAG+TGG - chr3_3:82487698-82487717 None:intergenic 40.0%
GGAATCAAAATCACCTTCTC+AGG - chr3_3:82487704-82487723 None:intergenic 40.0%
TCTAGTTGAGTCAGACGTTA+TGG + chr3_3:82487813-82487832 Msa0478010:intron 40.0%
ATTAGATAGGAAGCTTGGGA+AGG + chr3_3:82487947-82487966 Msa0478010:CDS 40.0%
TTAGATAGGAAGCTTGGGAA+GGG + chr3_3:82487948-82487967 Msa0478010:CDS 40.0%
AAACACCGTACATACCTCAA+CGG - chr3_3:82488024-82488043 None:intergenic 40.0%
GTTGCTTCGGCACAAAATAA+CGG - chr3_3:82488181-82488200 None:intergenic 40.0%
!! GTTATTTTGTGCCGAAGCAA+CGG + chr3_3:82488180-82488199 Msa0478010:intron 40.0%
!! TTATTTTGTGCCGAAGCAAC+GGG + chr3_3:82488181-82488200 Msa0478010:intron 40.0%
! AACAGCAAAGGGTGCAATTA+CGG + chr3_3:82488310-82488329 Msa0478010:CDS 40.0%
TTGTAAACCTGCCATTCATG+TGG - chr3_3:82488340-82488359 None:intergenic 40.0%
TGTTCCACGAGTACATTACA+AGG + chr3_3:82488480-82488499 Msa0478010:CDS 40.0%
GTTCCACGAGTACATTACAA+GGG + chr3_3:82488481-82488500 Msa0478010:CDS 40.0%
!! ATATGCTTGGCTCTAGTCTA+TGG + chr3_3:82488618-82488637 Msa0478010:CDS 40.0%
!! TATGCTTGGCTCTAGTCTAT+GGG + chr3_3:82488619-82488638 Msa0478010:CDS 40.0%
TAGGATGTCTACTGAAATGG+TGG + chr3_3:82488766-82488785 Msa0478010:intron 40.0%
ATAAATGTTGCTCAACCTCG+GGG - chr3_3:82489052-82489071 None:intergenic 40.0%
! AATTAAGTGTTGTGGAGGAG+AGG + chr3_3:82489169-82489188 Msa0478010:intron 40.0%
! AGAGGTTTCTTGTTATCCAG+AGG + chr3_3:82489187-82489206 Msa0478010:intron 40.0%
! GAGGTTTCTTGTTATCCAGA+GGG + chr3_3:82489188-82489207 Msa0478010:intron 40.0%
! AGGTTTCTTGTTATCCAGAG+GGG + chr3_3:82489189-82489208 Msa0478010:intron 40.0%
! TCTTTTTATCCAGTAGGGTG+AGG + chr3_3:82489219-82489238 Msa0478010:intron 40.0%
! ACTTTTCATGAGCACATCTC+AGG - chr3_3:82489383-82489402 None:intergenic 40.0%
CTGTGATTATGATAGGGACT+TGG + chr3_3:82489466-82489485 Msa0478010:intron 40.0%
TGATAGGGACTTGGGTATTA+TGG + chr3_3:82489475-82489494 Msa0478010:intron 40.0%
GATAGGGACTTGGGTATTAT+GGG + chr3_3:82489476-82489495 Msa0478010:intron 40.0%
CACGCCATACTACTTGATTT+GGG - chr3_3:82489512-82489531 None:intergenic 40.0%
ACACGCCATACTACTTGATT+TGG - chr3_3:82489513-82489532 None:intergenic 40.0%
AATCAAGTAGTATGGCGTGT+TGG + chr3_3:82489513-82489532 Msa0478010:intron 40.0%
ATCAAGTAGTATGGCGTGTT+GGG + chr3_3:82489514-82489533 Msa0478010:intron 40.0%
CTAAAAGCTAGCTATCAAGG+AGG - chr3_3:82489565-82489584 None:intergenic 40.0%
!!! CTCCTTGATAGCTAGCTTTT+AGG + chr3_3:82489563-82489582 Msa0478010:intron 40.0%
ATATCTGCAACAACAACAGC+AGG - chr3_3:82489831-82489850 None:intergenic 40.0%
TGTTGTTGCAGATATGTGCA+TGG + chr3_3:82489836-82489855 Msa0478010:intron 40.0%
AAGCCTGAAAACTTCTTGCT+TGG + chr3_3:82489866-82489885 Msa0478010:CDS 40.0%
!! GAAAGCATCAAAGGGTAACA+TGG - chr3_3:82489957-82489976 None:intergenic 40.0%
! TTTTCTACACAGCAACTCGT+TGG + chr3_3:82490008-82490027 Msa0478010:CDS 40.0%
ATCAACGCCCAGATGTATTT+AGG + chr3_3:82490065-82490084 Msa0478010:CDS 40.0%
ATCTTGGTAGAACAAGTAGC+AGG + chr3_3:82490307-82490326 Msa0478010:CDS 40.0%
ATAACCTGATATCCTTGCCA+AGG - chr3_3:82490390-82490409 None:intergenic 40.0%
CAAAAGCAACACAAAGCTTC+GGG - chr3_3:82490564-82490583 None:intergenic 40.0%
TATTCTACAAACTGCCGGAA+AGG - chr3_3:82490594-82490613 None:intergenic 40.0%
GACCCACAATTCCATCAAAA+AGG - chr3_3:82490668-82490687 None:intergenic 40.0%
GTGAAGCTTATATGTCAGGT+TGG + chr3_3:82490818-82490837 Msa0478010:intron 40.0%
TTCATCATCATCCTCTTCCA+TGG - chr3_3:82490864-82490883 None:intergenic 40.0%
CTCGTAGACCAATGAAACAA+AGG + chr3_3:82490945-82490964 Msa0478010:CDS 40.0%
GCGTAGGTATCATTACAATG+TGG + chr3_3:82491039-82491058 Msa0478010:intron 40.0%
TAGTCTTTGGGCACTCATTA+TGG + chr3_3:82491138-82491157 Msa0478010:CDS 40.0%
! CTCTTCCAGTTTTCTTCACA+AGG + chr3_3:82491198-82491217 Msa0478010:CDS 40.0%
! TCCAGTTTTCTTCACAAGGT+TGG + chr3_3:82491202-82491221 Msa0478010:intron 40.0%
ACCAACCTTGTGAAGAAAAC+TGG - chr3_3:82491206-82491225 None:intergenic 40.0%
!! AGGAATGGATTATGGAACAG+TGG + chr3_3:82491349-82491368 Msa0478010:intron 40.0%
!! GGAATGGATTATGGAACAGT+GGG + chr3_3:82491350-82491369 Msa0478010:intron 40.0%
TATTACATCAGTGCCATAGC+TGG + chr3_3:82491381-82491400 Msa0478010:CDS 40.0%
TGTGATCTGATGTTCCTTAC+AGG + chr3_3:82491555-82491574 Msa0478010:intron 40.0%
GTGATCTGATGTTCCTTACA+GGG + chr3_3:82491556-82491575 Msa0478010:intron 40.0%
GTGACTCGTTTCCATTTAAG+TGG + chr3_3:82491610-82491629 Msa0478010:CDS 40.0%
TTCTCTCTAAACTCGATGCT+AGG + chr3_3:82491805-82491824 Msa0478010:intron 40.0%
CTTCGATGAATACCTTCACT+AGG - chr3_3:82491854-82491873 None:intergenic 40.0%
!! CTAGTGAAGGTATTCATCGA+AGG + chr3_3:82491852-82491871 Msa0478010:CDS 40.0%
!! TGAAGGTATTCATCGAAGGT+GGG + chr3_3:82491856-82491875 Msa0478010:CDS 40.0%
! CATCAGGTGGTTTTCTTCTT+GGG - chr3_3:82491946-82491965 None:intergenic 40.0%
! TCATCAGGTGGTTTTCTTCT+TGG - chr3_3:82491947-82491966 None:intergenic 40.0%
GTTTCTTGAGTTTCATCAGG+TGG - chr3_3:82491959-82491978 None:intergenic 40.0%
AGCGTTTCTTGAGTTTCATC+AGG - chr3_3:82491962-82491981 None:intergenic 40.0%
TACTAGGAAAATCAGACGTG+CGG - chr3_3:82491985-82492004 None:intergenic 40.0%
TGTAGAATGCAGTTCAGCAT+TGG + chr3_3:82492267-82492286 Msa0478010:three_prime_UTR 40.0%
! TAAAATTTTCCAGCGGGAAC+TGG + chr3_3:82492524-82492543 Msa0478010:three_prime_UTR 40.0%
! AAAATTTTCCAGCGGGAACT+GGG + chr3_3:82492525-82492544 Msa0478010:three_prime_UTR 40.0%
AAATAGGCCTACCTTGTACT+TGG + chr3_3:82492554-82492573 Msa0478010:three_prime_UTR 40.0%
AAAAGAGCCAAGTACAAGGT+AGG - chr3_3:82492564-82492583 None:intergenic 40.0%
GGATAAAAGAGCCAAGTACA+AGG - chr3_3:82492568-82492587 None:intergenic 40.0%
!! CGGAGTAGCTTTAAATCAAG+AGG - chr3_3:82492594-82492613 None:intergenic 40.0%
! CTTGATTTAAAGCTACTCCG+AGG + chr3_3:82492594-82492613 Msa0478010:three_prime_UTR 40.0%
AAGGCCAAATTCAGACATTG+AGG - chr3_3:82492622-82492641 None:intergenic 40.0%
TCAATGTCTGAATTTGGCCT+TGG + chr3_3:82492621-82492640 Msa0478010:three_prime_UTR 40.0%
GTGAATAACGACGACGAAAC+AGG + chr3_3:82487527-82487546 Msa0478010:CDS 45.0%
! AGTGGTTAGGGTTTCTAGAG+AGG + chr3_3:82487595-82487614 Msa0478010:intron 45.0%
! GGTTTCTAGAGAGGAAGCTA+TGG + chr3_3:82487604-82487623 Msa0478010:intron 45.0%
GCTATGGATGAGTACGATAG+TGG + chr3_3:82487620-82487639 Msa0478010:CDS 45.0%
! ATGGATGAGTACGATAGTGG+TGG + chr3_3:82487623-82487642 Msa0478010:CDS 45.0%
TACAACTCCACTTCCTGAGA+AGG + chr3_3:82487688-82487707 Msa0478010:CDS 45.0%
GGATTTGGGCAAGTCTATGT+TGG + chr3_3:82487972-82487991 Msa0478010:CDS 45.0%
GGTGTTTATGTCTGCCATTG+TGG + chr3_3:82488037-82488056 Msa0478010:intron 45.0%
CACATCTATTCCCGTTGCTT+CGG - chr3_3:82488194-82488213 None:intergenic 45.0%
GAAGCAACGGGAATAGATGT+GGG + chr3_3:82488193-82488212 Msa0478010:intron 45.0%
ATTACGGACCTCCACATGAA+TGG + chr3_3:82488326-82488345 Msa0478010:CDS 45.0%
TAAACCTGCCATTCATGTGG+AGG - chr3_3:82488337-82488356 None:intergenic 45.0%
AGCACATTAGGTGGTAGTCA+TGG + chr3_3:82488457-82488476 Msa0478010:intron 45.0%
CACGAGTACATTACAAGGGA+CGG + chr3_3:82488485-82488504 Msa0478010:CDS 45.0%
! GCAAGGTGCCTACTACATTA+TGG + chr3_3:82488507-82488526 Msa0478010:CDS 45.0%
GGGGTTTCTATTGTCTCTGA+AGG + chr3_3:82488562-82488581 Msa0478010:intron 45.0%
ACACAGGTCATGGATATGCT+TGG + chr3_3:82488605-82488624 Msa0478010:intron 45.0%
GCTCTAGTCTATGGGATGTT+TGG + chr3_3:82488627-82488646 Msa0478010:CDS 45.0%
GATAACATAAGGCGAGACTC+AGG - chr3_3:82488931-82488950 None:intergenic 45.0%
ATTGAACGTGTTTCCCCATG+AGG - chr3_3:82488976-82488995 None:intergenic 45.0%
AAAAAGAAACCTCACCCCTC+TGG - chr3_3:82489206-82489225 None:intergenic 45.0%
TAAGCTTGACACACTGATCC+TGG - chr3_3:82489260-82489279 None:intergenic 45.0%
CATTAGTTCAGACTGAGAGC+AGG + chr3_3:82489306-82489325 Msa0478010:intron 45.0%
GACAAGTATCTGAGCACTTG+AGG - chr3_3:82489592-82489611 None:intergenic 45.0%
! GGTCCAAGCAAGAAGTTTTC+AGG - chr3_3:82489872-82489891 None:intergenic 45.0%
AAACTTCTTGCTTGGACCCT+CGG + chr3_3:82489874-82489893 Msa0478010:CDS 45.0%
AAGTAGCAGGAGAGATGACT+TGG + chr3_3:82490320-82490339 Msa0478010:CDS 45.0%
GAAGACAAGCGTGTAAGCAA+GGG - chr3_3:82490349-82490368 None:intergenic 45.0%
TTGTCTTCCTTCTTCGTGGT+CGG + chr3_3:82490361-82490380 Msa0478010:CDS 45.0%
GTTACCTTGGCAAGGATATC+AGG + chr3_3:82490383-82490402 Msa0478010:CDS 45.0%
TGGGTCCAAATCCTGACATT+AGG + chr3_3:82490682-82490701 Msa0478010:CDS 45.0%
GTATTTAGGGGCCTAATGTC+AGG - chr3_3:82490696-82490715 None:intergenic 45.0%
ATTAGGCCCCTAAATACCGA+GGG + chr3_3:82490699-82490718 Msa0478010:CDS 45.0%
!! TGTCAGGTTGGACAAAAGAG+AGG + chr3_3:82490830-82490849 Msa0478010:intron 45.0%
AAAGAGAGGACGATTGACCA+TGG + chr3_3:82490844-82490863 Msa0478010:CDS 45.0%
ACCAAAGAAGAAGGTCCGAA+TGG + chr3_3:82490886-82490905 Msa0478010:CDS 45.0%
CCAAAGAAGAAGGTCCGAAT+GGG + chr3_3:82490887-82490906 Msa0478010:CDS 45.0%
ACACTAATCCACTGTGTTGC+TGG - chr3_3:82490917-82490936 None:intergenic 45.0%
ATTACAATGTGGCCGATGAG+CGG + chr3_3:82491050-82491069 Msa0478010:CDS 45.0%
!! TGGCTTCTTGTGCTAGTCTT+TGG + chr3_3:82491125-82491144 Msa0478010:CDS 45.0%
!! GGCTTCTTGTGCTAGTCTTT+GGG + chr3_3:82491126-82491145 Msa0478010:CDS 45.0%
CTAAACTCGATGCTAGGTTG+TGG + chr3_3:82491811-82491830 Msa0478010:intron 45.0%
GATTTCCTGTACCCTAGTGA+AGG + chr3_3:82491839-82491858 Msa0478010:CDS 45.0%
GAATACCTTCACTAGGGTAC+AGG - chr3_3:82491847-82491866 None:intergenic 45.0%
!! GTGAAGGTATTCATCGAAGG+TGG + chr3_3:82491855-82491874 Msa0478010:CDS 45.0%
TTGCAGCAGTTGCAGTAATG+CGG - chr3_3:82491892-82491911 None:intergenic 45.0%
! GCAAGCGGGAATTTTGCAAT+AGG - chr3_3:82492201-82492220 None:intergenic 45.0%
AACTCAGATGTGTAGGCAAG+CGG - chr3_3:82492216-82492235 None:intergenic 45.0%
CTTGCCTACACATCTGAGTT+GGG + chr3_3:82492216-82492235 Msa0478010:three_prime_UTR 45.0%
AGTTCCCAACTCAGATGTGT+AGG - chr3_3:82492223-82492242 None:intergenic 45.0%
! GGGAACTGGGTGCTATAAAT+AGG + chr3_3:82492538-82492557 Msa0478010:three_prime_UTR 45.0%
ATTCAGACATTGAGGAGCCT+CGG - chr3_3:82492614-82492633 None:intergenic 45.0%
GGCTCCTCAATGTCTGAATT+TGG + chr3_3:82492615-82492634 Msa0478010:three_prime_UTR 45.0%
!! TTATATTTATTATTTATACA+TGG + chr3_3:82488865-82488884 Msa0478010:intron 5.0%
!! TATATTTATTATTTATACAT+GGG + chr3_3:82488866-82488885 Msa0478010:intron 5.0%
TGAGACGGTTTATGCGAGGT+CGG - chr3_3:82487379-82487398 None:intergenic 50.0%
TCAGTGAGACGGTTTATGCG+AGG - chr3_3:82487383-82487402 None:intergenic 50.0%
AAGCTTGGGAAGGGAGGATT+TGG + chr3_3:82487957-82487976 Msa0478010:CDS 50.0%
AGCTTGGGAAGGGAGGATTT+GGG + chr3_3:82487958-82487977 Msa0478010:CDS 50.0%
!! TGGTGCCGTTGAGGTATGTA+CGG + chr3_3:82488016-82488035 Msa0478010:intron 50.0%
! TCAATCACGGAGCACCACAA+TGG - chr3_3:82488054-82488073 None:intergenic 50.0%
CGAAGCAACGGGAATAGATG+TGG + chr3_3:82488192-82488211 Msa0478010:intron 50.0%
CGTCCCTTGTAATGTACTCG+TGG - chr3_3:82488487-82488506 None:intergenic 50.0%
GTACATTACAAGGGACGGCA+AGG + chr3_3:82488490-82488509 Msa0478010:CDS 50.0%
GGTGGCATGTATTGCAATCG+AGG + chr3_3:82488784-82488803 Msa0478010:CDS 50.0%
! GAGGGTGAGACTCATTTTCC+TGG + chr3_3:82488837-82488856 Msa0478010:intron 50.0%
! TCTTGTTATCCAGAGGGGTG+AGG + chr3_3:82489194-82489213 Msa0478010:intron 50.0%
TAGGGTGAGGTCCATGCTAA+GGG + chr3_3:82489232-82489251 Msa0478010:intron 50.0%
TGATCCTGGTACCCTTAGCA+TGG - chr3_3:82489246-82489265 None:intergenic 50.0%
! AACCCAAGTTCCACTTGCTG+TGG + chr3_3:82489333-82489352 Msa0478010:intron 50.0%
!! TTCCACTTGCTGTGGCCTAT+GGG + chr3_3:82489341-82489360 Msa0478010:intron 50.0%
TAGTTGACCATTGCAGGCAG+GGG - chr3_3:82489660-82489679 None:intergenic 50.0%
CTAGTTGACCATTGCAGGCA+GGG - chr3_3:82489661-82489680 None:intergenic 50.0%
ACTAGTTGACCATTGCAGGC+AGG - chr3_3:82489662-82489681 None:intergenic 50.0%
AACTTCTTGCTTGGACCCTC+GGG + chr3_3:82489875-82489894 Msa0478010:CDS 50.0%
CGTTGGCGTGATAGTTCAAC+TGG + chr3_3:82490025-82490044 Msa0478010:CDS 50.0%
GCTAGTGTGCATGCACATCT+TGG + chr3_3:82490291-82490310 Msa0478010:CDS 50.0%
GGAAGACAAGCGTGTAAGCA+AGG - chr3_3:82490350-82490369 None:intergenic 50.0%
ACGCTTGTCTTCCTTCTTCG+TGG + chr3_3:82490357-82490376 Msa0478010:CDS 50.0%
AAGGTAACCGACCACGAAGA+AGG - chr3_3:82490371-82490390 None:intergenic 50.0%
TTCTTCGTGGTCGGTTACCT+TGG + chr3_3:82490370-82490389 Msa0478010:CDS 50.0%
ACACAAAGCTTCGGGTGAAG+TGG - chr3_3:82490556-82490575 None:intergenic 50.0%
! GCTTTTGTCCTGCACCTTTC+CGG + chr3_3:82490577-82490596 Msa0478010:CDS 50.0%
AGGGGCCTAATGTCAGGATT+TGG - chr3_3:82490690-82490709 None:intergenic 50.0%
CATTAGGCCCCTAAATACCG+AGG + chr3_3:82490698-82490717 Msa0478010:CDS 50.0%
TGAGCACCCTCGGTATTTAG+GGG - chr3_3:82490708-82490727 None:intergenic 50.0%
CTGAGCACCCTCGGTATTTA+GGG - chr3_3:82490709-82490728 None:intergenic 50.0%
TCTGAGCACCCTCGGTATTT+AGG - chr3_3:82490710-82490729 None:intergenic 50.0%
!! AAATACCGAGGGTGCTCAGA+AGG + chr3_3:82490710-82490729 Msa0478010:CDS 50.0%
AAGTACCTTCTGAGCACCCT+CGG - chr3_3:82490718-82490737 None:intergenic 50.0%
AGGACGATTGACCATGGAAG+AGG + chr3_3:82490850-82490869 Msa0478010:CDS 50.0%
CCCATTCGGACCTTCTTCTT+TGG - chr3_3:82490890-82490909 None:intergenic 50.0%
TGGGCACTCATTATGGATGC+TGG + chr3_3:82491145-82491164 Msa0478010:CDS 50.0%
CTCATTATGGATGCTGGCAC+TGG + chr3_3:82491151-82491170 Msa0478010:CDS 50.0%
GCCATAGCTGGAGCTAGTAA+CGG + chr3_3:82491393-82491412 Msa0478010:CDS 50.0%
CCATAGCTGGAGCTAGTAAC+GGG + chr3_3:82491394-82491413 Msa0478010:CDS 50.0%
!! AGCTAGTAACGGGTCCTCAT+TGG + chr3_3:82491404-82491423 Msa0478010:CDS 50.0%
GCATGTATTGGGTCCCTGTA+AGG - chr3_3:82491572-82491591 None:intergenic 50.0%
TGGGCAATTGTTATGTCCCG+TGG + chr3_3:82491693-82491712 Msa0478010:CDS 50.0%
ATTGTTATGTCCCGTGGTGC+TGG + chr3_3:82491699-82491718 Msa0478010:CDS 50.0%
CTCTGTAAATCCAGCACCAC+GGG - chr3_3:82491712-82491731 None:intergenic 50.0%
GCTCTGTAAATCCAGCACCA+CGG - chr3_3:82491713-82491732 None:intergenic 50.0%
! TGGTGCTGGATTTACAGAGC+AGG + chr3_3:82491713-82491732 Msa0478010:CDS 50.0%
ACTCAGATGTGTAGGCAAGC+GGG - chr3_3:82492215-82492234 None:intergenic 50.0%
GCTTGCCTACACATCTGAGT+TGG + chr3_3:82492215-82492234 Msa0478010:three_prime_UTR 50.0%
GAGACGGTTTATGCGAGGTC+GGG - chr3_3:82487378-82487397 None:intergenic 55.0%
ATTCCTTCTGGTCTGTGCGG+CGG - chr3_3:82487450-82487469 None:intergenic 55.0%
CCGATTCCTTCTGGTCTGTG+CGG - chr3_3:82487453-82487472 None:intergenic 55.0%
CCGCACAGACCAGAAGGAAT+CGG + chr3_3:82487450-82487469 Msa0478010:CDS 55.0%
CACAGACCAGAAGGAATCGG+AGG + chr3_3:82487453-82487472 Msa0478010:CDS 55.0%
CTTCTGCCTCCGATTCCTTC+TGG - chr3_3:82487462-82487481 None:intergenic 55.0%
! CCGGAGCTTTATCGGCACTA+CGG - chr3_3:82487649-82487668 None:intergenic 55.0%
!! CCGTAGTGCCGATAAAGCTC+CGG + chr3_3:82487646-82487665 Msa0478010:CDS 55.0%
!! CGTAGTGCCGATAAAGCTCC+GGG + chr3_3:82487647-82487666 Msa0478010:CDS 55.0%
! TTCGGCTCCCGGAGCTTTAT+CGG - chr3_3:82487657-82487676 None:intergenic 55.0%
GATAGGAAGCTTGGGAAGGG+AGG + chr3_3:82487951-82487970 Msa0478010:CDS 55.0%
! GAGTGGAGCTGCTTTGCTGA+AGG + chr3_3:82488389-82488408 Msa0478010:intron 55.0%
TAGCATGGACCTCACCCTAC+TGG - chr3_3:82489231-82489250 None:intergenic 55.0%
GTAGGGTGAGGTCCATGCTA+AGG + chr3_3:82489231-82489250 Msa0478010:intron 55.0%
!! AGGTCCATGCTAAGGGTACC+AGG + chr3_3:82489239-82489258 Msa0478010:intron 55.0%
GGCCACAGCAAGTGGAACTT+GGG - chr3_3:82489338-82489357 None:intergenic 55.0%
AGGCCACAGCAAGTGGAACT+TGG - chr3_3:82489339-82489358 None:intergenic 55.0%
!! GTTCCACTTGCTGTGGCCTA+TGG + chr3_3:82489340-82489359 Msa0478010:intron 55.0%
!! TCCACTTGCTGTGGCCTATG+GGG + chr3_3:82489342-82489361 Msa0478010:intron 55.0%
GCACATCTCAGGTGCCAAAC+AGG - chr3_3:82489372-82489391 None:intergenic 55.0%
TGTTCTTCCCCTGCCTGCAA+TGG + chr3_3:82489650-82489669 Msa0478010:intron 55.0%
TTCTCATCAGGGGTTCCCGA+GGG - chr3_3:82489893-82489912 None:intergenic 55.0%
TTTCTCATCAGGGGTTCCCG+AGG - chr3_3:82489894-82489913 None:intergenic 55.0%
! ACAAACTGCCGGAAAGGTGC+AGG - chr3_3:82490588-82490607 None:intergenic 55.0%
!! GAGGGTGCTCAGAAGGTACT+TGG + chr3_3:82490717-82490736 Msa0478010:intron 55.0%
! GTGTTGCTGGCTGACCCATT+CGG - chr3_3:82490904-82490923 None:intergenic 55.0%
GTGTTGGGAAAGCCGCTCAT+CGG - chr3_3:82491065-82491084 None:intergenic 55.0%
CCCGTTACTAGCTCCAGCTA+TGG - chr3_3:82491397-82491416 None:intergenic 55.0%
TTATAGCACCCAGTTCCCGC+TGG - chr3_3:82492536-82492555 None:intergenic 55.0%
GCGGCGCGTTATCAGTGAGA+CGG - chr3_3:82487394-82487413 None:intergenic 60.0%
! TCTCACTGATAACGCGCCGC+CGG + chr3_3:82487394-82487413 Msa0478010:CDS 60.0%
CTCCGGGAGCCGAAGAAGAA+GGG + chr3_3:82487663-82487682 Msa0478010:CDS 60.0%
CTCCCTTCTTCTTCGGCTCC+CGG - chr3_3:82487668-82487687 None:intergenic 60.0%
GTCTATGTTGGCCGACGCGT+AGG + chr3_3:82487984-82488003 Msa0478010:CDS 60.0%
CAGAACCAGCTCCTACGCGT+CGG - chr3_3:82487998-82488017 None:intergenic 60.0%
!! AGCTGGTTCTGGTGCCGTTG+AGG + chr3_3:82488007-82488026 Msa0478010:CDS 60.0%
CGGACCTCCACATGAATGGC+AGG + chr3_3:82488330-82488349 Msa0478010:CDS 60.0%
TAAGGCGAGACTCAGGCAGC+AGG - chr3_3:82488924-82488943 None:intergenic 60.0%
GCCTATGGGGCGAACCTGTT+TGG + chr3_3:82489355-82489374 Msa0478010:intron 60.0%
GCCAAACAGGTTCGCCCCAT+AGG - chr3_3:82489359-82489378 None:intergenic 60.0%
CGTGGTCGGTTACCTTGGCA+AGG + chr3_3:82490375-82490394 Msa0478010:CDS 60.0%
TGGGTCAGCCAGCAACACAG+TGG + chr3_3:82490906-82490925 Msa0478010:CDS 60.0%
GTCACTGCTATGGCCACTGC+TGG + chr3_3:82491663-82491682 Msa0478010:CDS 60.0%
TGGCCACTGCTGGCACTAGA+TGG + chr3_3:82491673-82491692 Msa0478010:CDS 60.0%
GGCCACTGCTGGCACTAGAT+GGG + chr3_3:82491674-82491693 Msa0478010:CDS 60.0%
TGCCCATCTAGTGCCAGCAG+TGG - chr3_3:82491679-82491698 None:intergenic 60.0%
CGAGGTCGGGTACGCAACTC+AGG - chr3_3:82487365-82487384 None:intergenic 65.0%
GCTCCGGGAGCCGAAGAAGA+AGG + chr3_3:82487662-82487681 Msa0478010:CDS 65.0%
! CGACGCGTAGGAGCTGGTTC+TGG + chr3_3:82487996-82488015 Msa0478010:CDS 65.0%
GCCCCATAGGCCACAGCAAG+TGG - chr3_3:82489346-82489365 None:intergenic 65.0%
CCTTCTGGTCTGTGCGGCGG+TGG - chr3_3:82487447-82487466 None:intergenic 70.0%
CCACCGCCGCACAGACCAGA+AGG + chr3_3:82487444-82487463 Msa0478010:CDS 70.0%
GTTGGCCGACGCGTAGGAGC+TGG + chr3_3:82487990-82488009 Msa0478010:CDS 70.0%
GATAACGCGCCGCCGGTCGC+CGG + chr3_3:82487401-82487420 Msa0478010:CDS 75.0%
AGCGACGGCTCTCCTCCCGC+CGG - chr3_3:82487423-82487442 None:intergenic 75.0%
CTGTGCGGCGGTGGCAGCGA+CGG - chr3_3:82487438-82487457 None:intergenic 75.0%
! GCTCTCCTCCCGCCGGCGAC+CGG - chr3_3:82487416-82487435 None:intergenic 80.0%
! AACGCGCCGCCGGTCGCCGG+CGG + chr3_3:82487404-82487423 Msa0478010:CDS 85.0%
! CTCCTCCCGCCGGCGACCGG+CGG - chr3_3:82487413-82487432 None:intergenic 85.0%
! ACGCGCCGCCGGTCGCCGGC+GGG + chr3_3:82487405-82487424 Msa0478010:CDS 90.0%
! CGCCGCCGGTCGCCGGCGGG+AGG + chr3_3:82487408-82487427 Msa0478010:CDS 95.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 82487359 82492786 82487359 ID=Msa0478010;Name=Msa0478010
chr3_3 mRNA 82487359 82492786 82487359 ID=Msa0478010-mRNA-1;Parent=Msa0478010;Name=Msa0478010-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.86|0.75|1|0.93|0.87|16|630|704
chr3_3 exon 82487359 82487604 82487359 ID=Msa0478010-mRNA-1:exon:22968;Parent=Msa0478010-mRNA-1
chr3_3 exon 82487617 82487709 82487617 ID=Msa0478010-mRNA-1:exon:22969;Parent=Msa0478010-mRNA-1
chr3_3 exon 82487918 82488028 82487918 ID=Msa0478010-mRNA-1:exon:22970;Parent=Msa0478010-mRNA-1
chr3_3 exon 82488286 82488359 82488286 ID=Msa0478010-mRNA-1:exon:22971;Parent=Msa0478010-mRNA-1
chr3_3 exon 82488459 82488528 82488459 ID=Msa0478010-mRNA-1:exon:22972;Parent=Msa0478010-mRNA-1
chr3_3 exon 82488611 82488666 82488611 ID=Msa0478010-mRNA-1:exon:22973;Parent=Msa0478010-mRNA-1
chr3_3 exon 82488769 82488840 82488769 ID=Msa0478010-mRNA-1:exon:22974;Parent=Msa0478010-mRNA-1
chr3_3 exon 82489847 82490086 82489847 ID=Msa0478010-mRNA-1:exon:22975;Parent=Msa0478010-mRNA-1
chr3_3 exon 82490275 82490404 82490275 ID=Msa0478010-mRNA-1:exon:22976;Parent=Msa0478010-mRNA-1
chr3_3 exon 82490513 82490731 82490513 ID=Msa0478010-mRNA-1:exon:22977;Parent=Msa0478010-mRNA-1
chr3_3 exon 82490836 82490966 82490836 ID=Msa0478010-mRNA-1:exon:22978;Parent=Msa0478010-mRNA-1
chr3_3 exon 82491045 82491219 82491045 ID=Msa0478010-mRNA-1:exon:22979;Parent=Msa0478010-mRNA-1
chr3_3 exon 82491351 82491441 82491351 ID=Msa0478010-mRNA-1:exon:22980;Parent=Msa0478010-mRNA-1
chr3_3 exon 82491577 82491734 82491577 ID=Msa0478010-mRNA-1:exon:22981;Parent=Msa0478010-mRNA-1
chr3_3 exon 82491827 82492015 82491827 ID=Msa0478010-mRNA-1:exon:22982;Parent=Msa0478010-mRNA-1
chr3_3 exon 82492097 82492786 82492097 ID=Msa0478010-mRNA-1:exon:22983;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82487359 82487604 82487359 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82487617 82487709 82487617 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82487918 82488028 82487918 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82488286 82488359 82488286 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82488459 82488528 82488459 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82488611 82488666 82488611 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82488769 82488840 82488769 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82489847 82490086 82489847 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82490275 82490404 82490275 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82490513 82490731 82490513 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82490836 82490966 82490836 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82491045 82491219 82491045 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82491351 82491441 82491351 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82491577 82491734 82491577 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82491827 82492015 82491827 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 CDS 82492097 82492156 82492097 ID=Msa0478010-mRNA-1:cds;Parent=Msa0478010-mRNA-1
chr3_3 three_prime_UTR 82492157 82492786 82492157 ID=Msa0478010-mRNA-1:three_prime_utr;Parent=Msa0478010-mRNA-1
Gene Sequence

>Msa0478010

ATGCCTGAGTTGCGTACCCGACCTCGCATAAACCGTCTCACTGATAACGCGCCGCCGGTCGCCGGCGGGAGGAGAGCCGTCGCTGCCACCGCCGCACAGACCAGAAGGAATCGGAGGCAGAAGAAGAAGAAGAAGAACACGATCGTTGCCGAGAAAATCGAAAACATTGTGAATAACGACGACGAAACAGGAGTAGAGAGATTGAAAGAAGAGGAAGGAGAGAATAAGAAGAAGGCAGTGGTTAGGGAAGCTATGGATGAGTACGATAGTGGTGGCCGTAGTGCCGATAAAGCTCCGGGAGCCGAAGAAGAAGGGAGTACAACTCCACTTCCTGAGAAGATTCAAGTTGGTGGTTCTCCATTATATAGATTAGATAGGAAGCTTGGGAAGGGAGGATTTGGGCAAGTCTATGTTGGCCGACGCGTAGGAGCTGGTTCTGGTGCCGTTGAGGTAGCATTAAAATTTGAGCATAGAAACAGCAAAGGGTGCAATTACGGACCTCCACATGAATGGCAGGTTTACAACACATTAGGTGGTAGTCATGGTGTTCCACGAGTACATTACAAGGGACGGCAAGGTGCCTACTACATTATGGTCATGGATATGCTTGGCTCTAGTCTATGGGATGTTTGGAATAACAACTCACACACGATGTCTACTGAAATGGTGGCATGTATTGCAATCGAGGCTATCTCTATATTAGAGAAGATGCATTGTAGAGGATATGTGCATGGTGATGTAAAGCCTGAAAACTTCTTGCTTGGACCCTCGGGAACCCCTGATGAGAAAAAGTTGTTTCTGGTTGATCTTGGATTAGGTAAAAAAAAAGCCATGTTACCCTTTGATGCTTTCATTGTCAATGAAGATATGCTTATTCTCTCACTTTTCTACACAGCAACTCGTTGGCGTGATAGTTCAACTGGCCTTCATGTTGATTATGATCAACGCCCAGATGTATTTAGGGGAACAGTTCGTTATGCTAGTGTGCATGCACATCTTGGTAGAACAAGTAGCAGGAGAGATGACTTGGAATCCCTTGCTTACACGCTTGTCTTCCTTCTTCGTGGTCGGTTACCTTGGCAAGGATATCAGGGAGAAAATAAAGGATTTCTTGTCTGCAAGAAAAAGATGGCCACTTCACCCGAAGCTTTGTGTTGCTTTTGTCCTGCACCTTTCCGGCAGTTTGTAGAATATGTAGTAAATTTGAAGTTTGATGAAGAACCAAATTATGCAAAATACATATCCCTTTTTGATGGAATTGTGGGTCCAAATCCTGACATTAGGCCCCTAAATACCGAGGGTGCTCAGAAGGTTGGACAAAAGAGAGGACGATTGACCATGGAAGAGGATGATGATGAACAACCAAAGAAGAAGGTCCGAATGGGTCAGCCAGCAACACAGTGGATTAGTGTTTACAATGCTCGTAGACCAATGAAACAAAGGTATCATTACAATGTGGCCGATGAGCGGCTTTCCCAACACATTGTAAAAGGAAATGAAGATGGTTTATTTATTAGCAGTGTGGCTTCTTGTGCTAGTCTTTGGGCACTCATTATGGATGCTGGCACTGGTTTCACATCACAAGTTTACGAACTCTCTTCCAGTTTTCTTCACAAGGAATGGATTATGGAACAGTGGGATAAGAATTATTACATCAGTGCCATAGCTGGAGCTAGTAACGGGTCCTCATTGGTTGTAATGTCAAAAGGGACCCAATACATGCAACAATCCTATAAAGTCAGTGACTCGTTTCCATTTAAGTGGATCAACAAAAAATGGAGGGAAGGATTTTTTGTCACTGCTATGGCCACTGCTGGCACTAGATGGGCAATTGTTATGTCCCGTGGTGCTGGATTTACAGAGCAGGTTGTGGAACTTGATTTCCTGTACCCTAGTGAAGGTATTCATCGAAGGTGGGAAAACAATTACCGCATTACTGCAACTGCTGCAACGCCTGATCAAGCTGCTTTTATTTTAAGTGTCCCAAGAAGAAAACCACCTGATGAAACTCAAGAAACGCTCCGCACGTCTGATTTTCCTAGTACTCATGTTAAGGAAAAATGGGCAAAGAACCTCTATATCGCATCTATTAGTTATGGGAGAACAGTTTCATAA
Protein sequence

>Msa0478010

MPELRTRPRINRLTDNAPPVAGGRRAVAATAAQTRRNRRQKKKKKNTIVAEKIENIVNNDDETGVERLKEEEGENKKKAVVREAMDEYDSGGRSADKAPGAEEEGSTTPLPEKIQVGGSPLYRLDRKLGKGGFGQVYVGRRVGAGSGAVEVALKFEHRNSKGCNYGPPHEWQVYNTLGGSHGVPRVHYKGRQGAYYIMVMDMLGSSLWDVWNNNSHTMSTEMVACIAIEAISILEKMHCRGYVHGDVKPENFLLGPSGTPDEKKLFLVDLGLGKKKAMLPFDAFIVNEDMLILSLFYTATRWRDSSTGLHVDYDQRPDVFRGTVRYASVHAHLGRTSSRRDDLESLAYTLVFLLRGRLPWQGYQGENKGFLVCKKKMATSPEALCCFCPAPFRQFVEYVVNLKFDEEPNYAKYISLFDGIVGPNPDIRPLNTEGAQKVGQKRGRLTMEEDDDEQPKKKVRMGQPATQWISVYNARRPMKQRYHYNVADERLSQHIVKGNEDGLFISSVASCASLWALIMDAGTGFTSQVYELSSSFLHKEWIMEQWDKNYYISAIAGASNGSSLVVMSKGTQYMQQSYKVSDSFPFKWINKKWREGFFVTAMATAGTRWAIVMSRGAGFTEQVVELDFLYPSEGIHRRWENNYRITATAATPDQAAFILSVPRRKPPDETQETLRTSDFPSTHVKEKWAKNLYIASISYGRTVS*