Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478800 | XP_013462130.1 | 94.928 | 138 | 7 | 0 | 1 | 138 | 1 | 138 | 5.86e-92 | 273 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478800 | I3SPV4 | 94.928 | 138 | 7 | 0 | 1 | 138 | 1 | 138 | 2.80e-92 | 273 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0384220 | Msa0478800 | 0.834509 | 2.876376e-56 | -8.615850e-47 |
| Msa0478800 | Msa0882360 | 0.809390 | 1.937412e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478800 | MtrunA17_Chr3g0141671 | 94.928 | 138 | 7 | 0 | 1 | 138 | 1 | 138 | 5.39e-96 | 273 |
| Msa0478800 | MtrunA17_Chr1g0155341 | 59.722 | 144 | 49 | 4 | 1 | 137 | 1 | 142 | 2.86e-52 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0478800 | AT1G19530.2 | 44.882 | 127 | 54 | 6 | 1 | 126 | 1 | 112 | 1.34e-19 | 79.0 |
| Msa0478800 | AT1G19530.1 | 44.882 | 127 | 54 | 6 | 1 | 126 | 1 | 112 | 1.34e-19 | 79.0 |
Find 55 sgRNAs with CRISPR-Local
Find 148 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGAAGAAATTGATGCTTTC+TGG | 0.107507 | 3_3:+83657600 | Msa0478800:CDS |
| ATTAATTAAGTACCTGATTT+AGG | 0.181404 | 3_3:-83657472 | None:intergenic |
| CTGAATAGTCCTTGATAAAT+TGG | 0.192807 | 3_3:-83657666 | None:intergenic |
| GAAAGCATCAATTTCTTCTT+TGG | 0.235405 | 3_3:-83657597 | None:intergenic |
| CAATTTATCAAGGACTATTC+AGG | 0.271260 | 3_3:+83657667 | Msa0478800:CDS |
| CACGGTATCGTCGTATTTGC+CGG | 0.314261 | 3_3:-83657804 | None:intergenic |
| TTGGAATTAAAAGTGTGATT+TGG | 0.358296 | 3_3:+83657359 | Msa0478800:five_prime_UTR |
| TTACATTTATATATTGTAAA+GGG | 0.358760 | 3_3:-83658233 | None:intergenic |
| CGCCCCATGAAGAAATCATT+TGG | 0.393233 | 3_3:+83657836 | Msa0478800:CDS |
| GCAGGTGGACAAAGAGCAAC+TGG | 0.398226 | 3_3:+83658064 | Msa0478800:intron |
| CATGCCAAATGATTTCTTCA+TGG | 0.402591 | 3_3:-83657840 | None:intergenic |
| TCAATCAATGGGTTCTCTAA+TGG | 0.403373 | 3_3:+83657423 | Msa0478800:exon |
| TTCTTCATGGGGCGGGCCAA+GGG | 0.427383 | 3_3:-83657827 | None:intergenic |
| CAGAATCACTTGAAAGGAAT+CGG | 0.429094 | 3_3:+83657567 | Msa0478800:intron |
| GTTACATTTATATATTGTAA+AGG | 0.436853 | 3_3:-83658234 | None:intergenic |
| ATGCCAAATGATTTCTTCAT+GGG | 0.446330 | 3_3:-83657839 | None:intergenic |
| TTTCTTCATGGGGCGGGCCA+AGG | 0.451036 | 3_3:-83657828 | None:intergenic |
| ATAAATTGGAAATAACTTTG+AGG | 0.453495 | 3_3:-83657652 | None:intergenic |
| TATATATTGATCTTATTACT+TGG | 0.456811 | 3_3:+83657286 | Msa0478800:five_prime_UTR |
| GCAGTATCACGTAGCCAACT+TGG | 0.457996 | 3_3:+83658140 | Msa0478800:CDS |
| CATTTATATATTGTAAAGGG+TGG | 0.467372 | 3_3:-83658230 | None:intergenic |
| CACACAACTGATCCTAAATC+AGG | 0.475780 | 3_3:+83657460 | Msa0478800:CDS |
| AAGTTATTTCCAATTTATCA+AGG | 0.477495 | 3_3:+83657657 | Msa0478800:CDS |
| ATTCAGCAGCAATCAATCAA+TGG | 0.478897 | 3_3:+83657411 | Msa0478800:exon |
| GTATACATGTATTGTTGATA+AGG | 0.481225 | 3_3:-83657160 | None:intergenic |
| CATGGGGCGGGCCAAGGGCA+CGG | 0.483921 | 3_3:-83657822 | None:intergenic |
| TTAGATTTAGATAGACCATT+CGG | 0.484528 | 3_3:-83658205 | None:intergenic |
| TTCAGCAGCAATCAATCAAT+GGG | 0.491514 | 3_3:+83657412 | Msa0478800:exon |
| AAATGATTTCTTCATGGGGC+GGG | 0.491715 | 3_3:-83657834 | None:intergenic |
| TGCTTTCTGGAGATCAAAGA+AGG | 0.491783 | 3_3:+83657613 | Msa0478800:CDS |
| ACGGTATCGTCGTATTTGCC+GGG | 0.502188 | 3_3:-83657803 | None:intergenic |
| TTGGTAGGAGCTTCCAACAC+TGG | 0.503015 | 3_3:-83658105 | None:intergenic |
| ATACGACGATACCGTGCCCT+TGG | 0.513413 | 3_3:+83657811 | Msa0478800:CDS |
| GACACTTTGTAATAAAACAT+TGG | 0.518073 | 3_3:+83657210 | Msa0478800:five_prime_UTR |
| GGGTTCTCTAATGGCAGGAT+GGG | 0.519019 | 3_3:+83657432 | Msa0478800:CDS |
| ATACAAAGAAAGAAAGACAT+TGG | 0.548215 | 3_3:+83657340 | Msa0478800:five_prime_UTR |
| TCTGAATGAACCTCCAGTGT+TGG | 0.556541 | 3_3:+83658092 | Msa0478800:CDS |
| TGGGTTCTCTAATGGCAGGA+TGG | 0.562729 | 3_3:+83657431 | Msa0478800:CDS |
| ATATTTCAGAATCACTTGAA+AGG | 0.563841 | 3_3:+83657561 | Msa0478800:intron |
| TCAATGGGTTCTCTAATGGC+AGG | 0.564446 | 3_3:+83657427 | Msa0478800:exon |
| CATGAAGAAATCATTTGGCA+TGG | 0.570197 | 3_3:+83657841 | Msa0478800:CDS |
| CAAATGATTTCTTCATGGGG+CGG | 0.572003 | 3_3:-83657835 | None:intergenic |
| CAGATATGTTTCTGCTGCCG+AGG | 0.573974 | 3_3:-83657182 | None:intergenic |
| CAGTATCACGTAGCCAACTT+GGG | 0.576698 | 3_3:+83658141 | Msa0478800:CDS |
| ATACTGCGATGCATACTTGT+TGG | 0.576932 | 3_3:-83658124 | None:intergenic |
| GAATTAGTGCTTGTTCCGAA+TGG | 0.599911 | 3_3:+83658190 | Msa0478800:CDS |
| AACGTAACGTGCTTGTGTAG+TGG | 0.601346 | 3_3:-83657259 | None:intergenic |
| TGCCAAATGATTTCTTCATG+GGG | 0.625447 | 3_3:-83657838 | None:intergenic |
| TCAAAATTAAACACAGGACA+TGG | 0.627591 | 3_3:+83658168 | Msa0478800:CDS |
| TGCGATGCATACTTGTTGGT+AGG | 0.629639 | 3_3:-83658120 | None:intergenic |
| GAGATCAAAGAAGGAGACAG+AGG | 0.641594 | 3_3:+83657622 | Msa0478800:CDS |
| GTAGGAGCTTCCAACACTGG+AGG | 0.653697 | 3_3:-83658102 | None:intergenic |
| GGATCATCAAAATTAAACAC+AGG | 0.655378 | 3_3:+83658162 | Msa0478800:CDS |
| CAGGTGGACAAAGAGCAACT+GGG | 0.670316 | 3_3:+83658065 | Msa0478800:intron |
| TCAACAATACATGTATACCT+CGG | 0.696555 | 3_3:+83657165 | Msa0478800:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTACATTTATATATTGTAAA+GGG | - | chr3_3:83658236-83658255 | None:intergenic | 10.0% |
| !! | TTACATTTATATATTGTAAA+GGG | - | chr3_3:83658236-83658255 | None:intergenic | 10.0% |
| !! | TATATATTGATCTTATTACT+TGG | + | chr3_3:83657286-83657305 | Msa0478800:five_prime_UTR | 15.0% |
| !! | AATTCATTTCGATATTTAAT+TGG | + | chr3_3:83657776-83657795 | Msa0478800:intron | 15.0% |
| !! | CTTAAAAATATGAAGAAAAA+TGG | + | chr3_3:83657887-83657906 | Msa0478800:CDS | 15.0% |
| !! | CTTTATATTGAATTTGAATA+TGG | + | chr3_3:83658026-83658045 | Msa0478800:intron | 15.0% |
| !! | GTTACATTTATATATTGTAA+AGG | - | chr3_3:83658237-83658256 | None:intergenic | 15.0% |
| !! | TATATATTGATCTTATTACT+TGG | + | chr3_3:83657286-83657305 | Msa0478800:five_prime_UTR | 15.0% |
| !! | AATTCATTTCGATATTTAAT+TGG | + | chr3_3:83657776-83657795 | Msa0478800:intron | 15.0% |
| !! | CTTAAAAATATGAAGAAAAA+TGG | + | chr3_3:83657887-83657906 | Msa0478800:CDS | 15.0% |
| !! | CTTTATATTGAATTTGAATA+TGG | + | chr3_3:83658026-83658045 | Msa0478800:intron | 15.0% |
| !! | GTTACATTTATATATTGTAA+AGG | - | chr3_3:83658237-83658256 | None:intergenic | 15.0% |
| !! | ATTAATTAAGTACCTGATTT+AGG | - | chr3_3:83657475-83657494 | None:intergenic | 20.0% |
| !! | ATAAATTGGAAATAACTTTG+AGG | - | chr3_3:83657655-83657674 | None:intergenic | 20.0% |
| !!! | AAGTTATTTCCAATTTATCA+AGG | + | chr3_3:83657657-83657676 | Msa0478800:CDS | 20.0% |
| !!! | TTAAAAGTATTCATGACAAT+TGG | - | chr3_3:83657992-83658011 | None:intergenic | 20.0% |
| !!! | TGTCATGAATACTTTTAATT+TGG | + | chr3_3:83657994-83658013 | Msa0478800:intron | 20.0% |
| !! | ATTAATTAAGTACCTGATTT+AGG | - | chr3_3:83657475-83657494 | None:intergenic | 20.0% |
| !! | ATAAATTGGAAATAACTTTG+AGG | - | chr3_3:83657655-83657674 | None:intergenic | 20.0% |
| !!! | AAGTTATTTCCAATTTATCA+AGG | + | chr3_3:83657657-83657676 | Msa0478800:CDS | 20.0% |
| !!! | TTAAAAGTATTCATGACAAT+TGG | - | chr3_3:83657992-83658011 | None:intergenic | 20.0% |
| !!! | TGTCATGAATACTTTTAATT+TGG | + | chr3_3:83657994-83658013 | Msa0478800:intron | 20.0% |
| ! | GTATACATGTATTGTTGATA+AGG | - | chr3_3:83657163-83657182 | None:intergenic | 25.0% |
| ! | GACACTTTGTAATAAAACAT+TGG | + | chr3_3:83657210-83657229 | Msa0478800:five_prime_UTR | 25.0% |
| ! | ATACAAAGAAAGAAAGACAT+TGG | + | chr3_3:83657340-83657359 | Msa0478800:five_prime_UTR | 25.0% |
| !! | TTGGAATTAAAAGTGTGATT+TGG | + | chr3_3:83657359-83657378 | Msa0478800:five_prime_UTR | 25.0% |
| ! | ATATTTCAGAATCACTTGAA+AGG | + | chr3_3:83657561-83657580 | Msa0478800:intron | 25.0% |
| ! | AAAATATGAAGAAAAATGGC+TGG | + | chr3_3:83657891-83657910 | Msa0478800:CDS | 25.0% |
| ! | AATTTGAATATGGTTGCATT+GGG | + | chr3_3:83658036-83658055 | Msa0478800:intron | 25.0% |
| ! | TTAGATTTAGATAGACCATT+CGG | - | chr3_3:83658208-83658227 | None:intergenic | 25.0% |
| ! | CATTTATATATTGTAAAGGG+TGG | - | chr3_3:83658233-83658252 | None:intergenic | 25.0% |
| ! | GTATACATGTATTGTTGATA+AGG | - | chr3_3:83657163-83657182 | None:intergenic | 25.0% |
| ! | GACACTTTGTAATAAAACAT+TGG | + | chr3_3:83657210-83657229 | Msa0478800:five_prime_UTR | 25.0% |
| ! | ATACAAAGAAAGAAAGACAT+TGG | + | chr3_3:83657340-83657359 | Msa0478800:five_prime_UTR | 25.0% |
| !! | TTGGAATTAAAAGTGTGATT+TGG | + | chr3_3:83657359-83657378 | Msa0478800:five_prime_UTR | 25.0% |
| ! | ATATTTCAGAATCACTTGAA+AGG | + | chr3_3:83657561-83657580 | Msa0478800:intron | 25.0% |
| ! | AAAATATGAAGAAAAATGGC+TGG | + | chr3_3:83657891-83657910 | Msa0478800:CDS | 25.0% |
| ! | AATTTGAATATGGTTGCATT+GGG | + | chr3_3:83658036-83658055 | Msa0478800:intron | 25.0% |
| ! | TTAGATTTAGATAGACCATT+CGG | - | chr3_3:83658208-83658227 | None:intergenic | 25.0% |
| ! | CATTTATATATTGTAAAGGG+TGG | - | chr3_3:83658233-83658252 | None:intergenic | 25.0% |
| TCAACAATACATGTATACCT+CGG | + | chr3_3:83657165-83657184 | Msa0478800:five_prime_UTR | 30.0% | |
| !! | GAAAGCATCAATTTCTTCTT+TGG | - | chr3_3:83657600-83657619 | None:intergenic | 30.0% |
| AAGAAGAAATTGATGCTTTC+TGG | + | chr3_3:83657600-83657619 | Msa0478800:CDS | 30.0% | |
| CTGAATAGTCCTTGATAAAT+TGG | - | chr3_3:83657669-83657688 | None:intergenic | 30.0% | |
| CAATTTATCAAGGACTATTC+AGG | + | chr3_3:83657667-83657686 | Msa0478800:CDS | 30.0% | |
| ATGCCAAATGATTTCTTCAT+GGG | - | chr3_3:83657842-83657861 | None:intergenic | 30.0% | |
| CATGGATGTTGACAAAAATA+TGG | + | chr3_3:83657859-83657878 | Msa0478800:CDS | 30.0% | |
| ! | GTTTTCTAACGACTAACAAT+TGG | - | chr3_3:83657932-83657951 | None:intergenic | 30.0% |
| GAATTTGAATATGGTTGCAT+TGG | + | chr3_3:83658035-83658054 | Msa0478800:intron | 30.0% | |
| !! | TAATTTTGATGATCCCAAGT+TGG | - | chr3_3:83658157-83658176 | None:intergenic | 30.0% |
| GGATCATCAAAATTAAACAC+AGG | + | chr3_3:83658162-83658181 | Msa0478800:CDS | 30.0% | |
| TCAAAATTAAACACAGGACA+TGG | + | chr3_3:83658168-83658187 | Msa0478800:CDS | 30.0% | |
| TCAACAATACATGTATACCT+CGG | + | chr3_3:83657165-83657184 | Msa0478800:five_prime_UTR | 30.0% | |
| !! | GAAAGCATCAATTTCTTCTT+TGG | - | chr3_3:83657600-83657619 | None:intergenic | 30.0% |
| AAGAAGAAATTGATGCTTTC+TGG | + | chr3_3:83657600-83657619 | Msa0478800:CDS | 30.0% | |
| CTGAATAGTCCTTGATAAAT+TGG | - | chr3_3:83657669-83657688 | None:intergenic | 30.0% | |
| CAATTTATCAAGGACTATTC+AGG | + | chr3_3:83657667-83657686 | Msa0478800:CDS | 30.0% | |
| ATGCCAAATGATTTCTTCAT+GGG | - | chr3_3:83657842-83657861 | None:intergenic | 30.0% | |
| CATGGATGTTGACAAAAATA+TGG | + | chr3_3:83657859-83657878 | Msa0478800:CDS | 30.0% | |
| ! | GTTTTCTAACGACTAACAAT+TGG | - | chr3_3:83657932-83657951 | None:intergenic | 30.0% |
| GAATTTGAATATGGTTGCAT+TGG | + | chr3_3:83658035-83658054 | Msa0478800:intron | 30.0% | |
| !! | TAATTTTGATGATCCCAAGT+TGG | - | chr3_3:83658157-83658176 | None:intergenic | 30.0% |
| GGATCATCAAAATTAAACAC+AGG | + | chr3_3:83658162-83658181 | Msa0478800:CDS | 30.0% | |
| TCAAAATTAAACACAGGACA+TGG | + | chr3_3:83658168-83658187 | Msa0478800:CDS | 30.0% | |
| ATTCAGCAGCAATCAATCAA+TGG | + | chr3_3:83657411-83657430 | Msa0478800:exon | 35.0% | |
| TTCAGCAGCAATCAATCAAT+GGG | + | chr3_3:83657412-83657431 | Msa0478800:exon | 35.0% | |
| ! | TCAATCAATGGGTTCTCTAA+TGG | + | chr3_3:83657423-83657442 | Msa0478800:exon | 35.0% |
| TTGTCTTTATGCTCTGTGTT+TGG | + | chr3_3:83657518-83657537 | Msa0478800:intron | 35.0% | |
| CAGAATCACTTGAAAGGAAT+CGG | + | chr3_3:83657567-83657586 | Msa0478800:intron | 35.0% | |
| TGCCAAATGATTTCTTCATG+GGG | - | chr3_3:83657841-83657860 | None:intergenic | 35.0% | |
| CATGCCAAATGATTTCTTCA+TGG | - | chr3_3:83657843-83657862 | None:intergenic | 35.0% | |
| CATGAAGAAATCATTTGGCA+TGG | + | chr3_3:83657841-83657860 | Msa0478800:CDS | 35.0% | |
| ! | ATGGCTGGTAAATTTTCTCA+TGG | + | chr3_3:83657906-83657925 | Msa0478800:intron | 35.0% |
| AAGTCTGCAAGTAGTTGAAT+TGG | - | chr3_3:83657966-83657985 | None:intergenic | 35.0% | |
| ATTCAACTACTTGCAGACTT+AGG | + | chr3_3:83657966-83657985 | Msa0478800:intron | 35.0% | |
| ATTCAGCAGCAATCAATCAA+TGG | + | chr3_3:83657411-83657430 | Msa0478800:exon | 35.0% | |
| TTCAGCAGCAATCAATCAAT+GGG | + | chr3_3:83657412-83657431 | Msa0478800:exon | 35.0% | |
| ! | TCAATCAATGGGTTCTCTAA+TGG | + | chr3_3:83657423-83657442 | Msa0478800:exon | 35.0% |
| TTGTCTTTATGCTCTGTGTT+TGG | + | chr3_3:83657518-83657537 | Msa0478800:intron | 35.0% | |
| CAGAATCACTTGAAAGGAAT+CGG | + | chr3_3:83657567-83657586 | Msa0478800:intron | 35.0% | |
| TGCCAAATGATTTCTTCATG+GGG | - | chr3_3:83657841-83657860 | None:intergenic | 35.0% | |
| CATGCCAAATGATTTCTTCA+TGG | - | chr3_3:83657843-83657862 | None:intergenic | 35.0% | |
| CATGAAGAAATCATTTGGCA+TGG | + | chr3_3:83657841-83657860 | Msa0478800:CDS | 35.0% | |
| ! | ATGGCTGGTAAATTTTCTCA+TGG | + | chr3_3:83657906-83657925 | Msa0478800:intron | 35.0% |
| AAGTCTGCAAGTAGTTGAAT+TGG | - | chr3_3:83657966-83657985 | None:intergenic | 35.0% | |
| ATTCAACTACTTGCAGACTT+AGG | + | chr3_3:83657966-83657985 | Msa0478800:intron | 35.0% | |
| CACACAACTGATCCTAAATC+AGG | + | chr3_3:83657460-83657479 | Msa0478800:CDS | 40.0% | |
| ! | TGCTTTCTGGAGATCAAAGA+AGG | + | chr3_3:83657613-83657632 | Msa0478800:CDS | 40.0% |
| CGATATTTAATTGGACAGCC+CGG | + | chr3_3:83657785-83657804 | Msa0478800:intron | 40.0% | |
| AAATGATTTCTTCATGGGGC+GGG | - | chr3_3:83657837-83657856 | None:intergenic | 40.0% | |
| CAAATGATTTCTTCATGGGG+CGG | - | chr3_3:83657838-83657857 | None:intergenic | 40.0% | |
| ATACTGCGATGCATACTTGT+TGG | - | chr3_3:83658127-83658146 | None:intergenic | 40.0% | |
| GAATTAGTGCTTGTTCCGAA+TGG | + | chr3_3:83658190-83658209 | Msa0478800:CDS | 40.0% | |
| CACACAACTGATCCTAAATC+AGG | + | chr3_3:83657460-83657479 | Msa0478800:CDS | 40.0% | |
| ! | TGCTTTCTGGAGATCAAAGA+AGG | + | chr3_3:83657613-83657632 | Msa0478800:CDS | 40.0% |
| CGATATTTAATTGGACAGCC+CGG | + | chr3_3:83657785-83657804 | Msa0478800:intron | 40.0% | |
| AAATGATTTCTTCATGGGGC+GGG | - | chr3_3:83657837-83657856 | None:intergenic | 40.0% | |
| CAAATGATTTCTTCATGGGG+CGG | - | chr3_3:83657838-83657857 | None:intergenic | 40.0% | |
| ATACTGCGATGCATACTTGT+TGG | - | chr3_3:83658127-83658146 | None:intergenic | 40.0% | |
| GAATTAGTGCTTGTTCCGAA+TGG | + | chr3_3:83658190-83658209 | Msa0478800:CDS | 40.0% | |
| AACGTAACGTGCTTGTGTAG+TGG | - | chr3_3:83657262-83657281 | None:intergenic | 45.0% | |
| ! | TCAATGGGTTCTCTAATGGC+AGG | + | chr3_3:83657427-83657446 | Msa0478800:exon | 45.0% |
| ! | ATGCTCTGTGTTTGGCTTCA+CGG | + | chr3_3:83657526-83657545 | Msa0478800:intron | 45.0% |
| GAGATCAAAGAAGGAGACAG+AGG | + | chr3_3:83657622-83657641 | Msa0478800:CDS | 45.0% | |
| CGCCCCATGAAGAAATCATT+TGG | + | chr3_3:83657836-83657855 | Msa0478800:CDS | 45.0% | |
| TCTGAATGAACCTCCAGTGT+TGG | + | chr3_3:83658092-83658111 | Msa0478800:CDS | 45.0% | |
| ! | TGCGATGCATACTTGTTGGT+AGG | - | chr3_3:83658123-83658142 | None:intergenic | 45.0% |
| CAGTATCACGTAGCCAACTT+GGG | + | chr3_3:83658141-83658160 | Msa0478800:CDS | 45.0% | |
| AACGTAACGTGCTTGTGTAG+TGG | - | chr3_3:83657262-83657281 | None:intergenic | 45.0% | |
| ! | TCAATGGGTTCTCTAATGGC+AGG | + | chr3_3:83657427-83657446 | Msa0478800:exon | 45.0% |
| ! | ATGCTCTGTGTTTGGCTTCA+CGG | + | chr3_3:83657526-83657545 | Msa0478800:intron | 45.0% |
| GAGATCAAAGAAGGAGACAG+AGG | + | chr3_3:83657622-83657641 | Msa0478800:CDS | 45.0% | |
| CGCCCCATGAAGAAATCATT+TGG | + | chr3_3:83657836-83657855 | Msa0478800:CDS | 45.0% | |
| TCTGAATGAACCTCCAGTGT+TGG | + | chr3_3:83658092-83658111 | Msa0478800:CDS | 45.0% | |
| ! | TGCGATGCATACTTGTTGGT+AGG | - | chr3_3:83658123-83658142 | None:intergenic | 45.0% |
| CAGTATCACGTAGCCAACTT+GGG | + | chr3_3:83658141-83658160 | Msa0478800:CDS | 45.0% | |
| ! | CAGATATGTTTCTGCTGCCG+AGG | - | chr3_3:83657185-83657204 | None:intergenic | 50.0% |
| TGGGTTCTCTAATGGCAGGA+TGG | + | chr3_3:83657431-83657450 | Msa0478800:CDS | 50.0% | |
| GGGTTCTCTAATGGCAGGAT+GGG | + | chr3_3:83657432-83657451 | Msa0478800:CDS | 50.0% | |
| ACGGTATCGTCGTATTTGCC+GGG | - | chr3_3:83657806-83657825 | None:intergenic | 50.0% | |
| CACGGTATCGTCGTATTTGC+CGG | - | chr3_3:83657807-83657826 | None:intergenic | 50.0% | |
| CAGGTGGACAAAGAGCAACT+GGG | + | chr3_3:83658065-83658084 | Msa0478800:intron | 50.0% | |
| TTGGTAGGAGCTTCCAACAC+TGG | - | chr3_3:83658108-83658127 | None:intergenic | 50.0% | |
| GCAGTATCACGTAGCCAACT+TGG | + | chr3_3:83658140-83658159 | Msa0478800:CDS | 50.0% | |
| ! | CAGATATGTTTCTGCTGCCG+AGG | - | chr3_3:83657185-83657204 | None:intergenic | 50.0% |
| TGGGTTCTCTAATGGCAGGA+TGG | + | chr3_3:83657431-83657450 | Msa0478800:CDS | 50.0% | |
| GGGTTCTCTAATGGCAGGAT+GGG | + | chr3_3:83657432-83657451 | Msa0478800:CDS | 50.0% | |
| ACGGTATCGTCGTATTTGCC+GGG | - | chr3_3:83657806-83657825 | None:intergenic | 50.0% | |
| CACGGTATCGTCGTATTTGC+CGG | - | chr3_3:83657807-83657826 | None:intergenic | 50.0% | |
| CAGGTGGACAAAGAGCAACT+GGG | + | chr3_3:83658065-83658084 | Msa0478800:intron | 50.0% | |
| TTGGTAGGAGCTTCCAACAC+TGG | - | chr3_3:83658108-83658127 | None:intergenic | 50.0% | |
| GCAGTATCACGTAGCCAACT+TGG | + | chr3_3:83658140-83658159 | Msa0478800:CDS | 50.0% | |
| ATACGACGATACCGTGCCCT+TGG | + | chr3_3:83657811-83657830 | Msa0478800:CDS | 55.0% | |
| TGGTTGCATTGGGTGAGTGC+AGG | + | chr3_3:83658046-83658065 | Msa0478800:intron | 55.0% | |
| TTGCATTGGGTGAGTGCAGG+TGG | + | chr3_3:83658049-83658068 | Msa0478800:intron | 55.0% | |
| GCAGGTGGACAAAGAGCAAC+TGG | + | chr3_3:83658064-83658083 | Msa0478800:intron | 55.0% | |
| GTAGGAGCTTCCAACACTGG+AGG | - | chr3_3:83658105-83658124 | None:intergenic | 55.0% | |
| ATACGACGATACCGTGCCCT+TGG | + | chr3_3:83657811-83657830 | Msa0478800:CDS | 55.0% | |
| TGGTTGCATTGGGTGAGTGC+AGG | + | chr3_3:83658046-83658065 | Msa0478800:intron | 55.0% | |
| TTGCATTGGGTGAGTGCAGG+TGG | + | chr3_3:83658049-83658068 | Msa0478800:intron | 55.0% | |
| GCAGGTGGACAAAGAGCAAC+TGG | + | chr3_3:83658064-83658083 | Msa0478800:intron | 55.0% | |
| GTAGGAGCTTCCAACACTGG+AGG | - | chr3_3:83658105-83658124 | None:intergenic | 55.0% | |
| TTCTTCATGGGGCGGGCCAA+GGG | - | chr3_3:83657830-83657849 | None:intergenic | 60.0% | |
| TTTCTTCATGGGGCGGGCCA+AGG | - | chr3_3:83657831-83657850 | None:intergenic | 60.0% | |
| TTCTTCATGGGGCGGGCCAA+GGG | - | chr3_3:83657830-83657849 | None:intergenic | 60.0% | |
| TTTCTTCATGGGGCGGGCCA+AGG | - | chr3_3:83657831-83657850 | None:intergenic | 60.0% | |
| CATGGGGCGGGCCAAGGGCA+CGG | - | chr3_3:83657825-83657844 | None:intergenic | 75.0% | |
| CATGGGGCGGGCCAAGGGCA+CGG | - | chr3_3:83657825-83657844 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 83657154 | 83658264 | 83657154 | ID=Msa0478800;Name=Msa0478800 |
| chr3_3 | mRNA | 83657154 | 83658264 | 83657154 | ID=Msa0478800-mRNA-1;Parent=Msa0478800;Name=Msa0478800-mRNA-1;_AED=0.30;_eAED=0.30;_QI=276|1|1|1|1|1|4|43|144 |
| chr3_3 | exon | 83657154 | 83657481 | 83657154 | ID=Msa0478800-mRNA-1:exon:23564;Parent=Msa0478800-mRNA-1 |
| chr3_3 | exon | 83657570 | 83657688 | 83657570 | ID=Msa0478800-mRNA-1:exon:23565;Parent=Msa0478800-mRNA-1 |
| chr3_3 | exon | 83657803 | 83657912 | 83657803 | ID=Msa0478800-mRNA-1:exon:23566;Parent=Msa0478800-mRNA-1 |
| chr3_3 | exon | 83658068 | 83658264 | 83658068 | ID=Msa0478800-mRNA-1:exon:23567;Parent=Msa0478800-mRNA-1 |
| chr3_3 | five_prime_UTR | 83657154 | 83657429 | 83657154 | ID=Msa0478800-mRNA-1:five_prime_utr;Parent=Msa0478800-mRNA-1 |
| chr3_3 | CDS | 83657430 | 83657481 | 83657430 | ID=Msa0478800-mRNA-1:cds;Parent=Msa0478800-mRNA-1 |
| chr3_3 | CDS | 83657570 | 83657688 | 83657570 | ID=Msa0478800-mRNA-1:cds;Parent=Msa0478800-mRNA-1 |
| chr3_3 | CDS | 83657803 | 83657912 | 83657803 | ID=Msa0478800-mRNA-1:cds;Parent=Msa0478800-mRNA-1 |
| chr3_3 | CDS | 83658068 | 83658221 | 83658068 | ID=Msa0478800-mRNA-1:cds;Parent=Msa0478800-mRNA-1 |
| chr3_3 | three_prime_UTR | 83658222 | 83658264 | 83658222 | ID=Msa0478800-mRNA-1:three_prime_utr;Parent=Msa0478800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
