AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0384220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384220 MtrunA17_Chr3g0141671 94.928 138 7 0 1 138 1 138 4.78e-96 273
Msa0384220 MtrunA17_Chr1g0155341 59.722 144 49 4 1 137 1 142 2.25e-52 162
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0384220 AT1G19530.2 45.669 127 53 6 1 126 1 112 3.63e-20 80.5
Msa0384220 AT1G19530.1 45.669 127 53 6 1 126 1 112 3.63e-20 80.5

Find 56 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAAGAAATTGATGCTTTC+TGG 0.107507 3_1:-87280803 Msa0384220:CDS
ATTAATTAAGTACCTGATTT+AGG 0.181404 3_1:+87280931 None:intergenic
CTGAATAGTCCTTGATAAAT+TGG 0.192807 3_1:+87280737 None:intergenic
GAAAGCATCAATTTCTTCTT+TGG 0.235405 3_1:+87280806 None:intergenic
CAATTTATCAAGGACTATTC+AGG 0.271260 3_1:-87280736 Msa0384220:intron
CACGGTATCGTCGTATTTGC+CGG 0.314261 3_1:+87280582 None:intergenic
TTACATTTATATATTGTAAA+GGG 0.358760 3_1:+87280142 None:intergenic
GCAGGTGGACCAAGAGCAAC+TGG 0.363566 3_1:-87280311 Msa0384220:intron
CGCCCCATGAAGAAATCATT+TGG 0.393233 3_1:-87280550 Msa0384220:CDS
TTGGTAGGAGCTTCCATCAC+TGG 0.398603 3_1:+87280270 None:intergenic
CATGCCAAATGATTTCTTCA+TGG 0.402591 3_1:+87280546 None:intergenic
TCAATCAATGGGTTCTCTAA+TGG 0.403373 3_1:-87280980 Msa0384220:exon
TTGGAATTAAGAGTGTGATT+TGG 0.408407 3_1:-87281044 Msa0384220:five_prime_UTR
TTCTTCATGGGGCGGGCCAA+GGG 0.427383 3_1:+87280559 None:intergenic
CAGAATCACTTGAAAGGAAT+CGG 0.429094 3_1:-87280836 Msa0384220:CDS
GTTACATTTATATATTGTAA+AGG 0.436853 3_1:+87280141 None:intergenic
ATGCCAAATGATTTCTTCAT+GGG 0.446330 3_1:+87280547 None:intergenic
TTTCTTCATGGGGCGGGCCA+AGG 0.451036 3_1:+87280558 None:intergenic
TATATATTGATCTTATTACT+TGG 0.456811 3_1:-87281113 Msa0384220:five_prime_UTR
GCAGTATCACGTAGCCAACT+TGG 0.457996 3_1:-87280235 Msa0384220:CDS
CAGAAACGCCCAGTTGCTCT+TGG 0.458612 3_1:+87280302 None:intergenic
CATTTATATATTGTAAAGGG+TGG 0.467372 3_1:+87280145 None:intergenic
CACACAACTGATCCTAAATC+AGG 0.475780 3_1:-87280943 Msa0384220:intron
ATTCAGCAGCAATCAATCAA+TGG 0.478897 3_1:-87280992 Msa0384220:exon
AAGTTATTTCCAATTTATCA+AGG 0.479978 3_1:-87280746 Msa0384220:CDS
GTATACATGTATTGTTGATA+AGG 0.481225 3_1:+87281239 None:intergenic
CATGGGGCGGGCCAAGGGCA+CGG 0.483921 3_1:+87280564 None:intergenic
TTAGATTTAGATAGACCATT+CGG 0.484528 3_1:+87280170 None:intergenic
TTCAGCAGCAATCAATCAAT+GGG 0.491514 3_1:-87280991 Msa0384220:exon
AAATGATTTCTTCATGGGGC+GGG 0.491715 3_1:+87280552 None:intergenic
TGCTTTCTGGAGATCAAAGA+AGG 0.491783 3_1:-87280790 Msa0384220:CDS
AGTCAACAATATACAAAGAA+AGG 0.494063 3_1:-87281069 Msa0384220:five_prime_UTR
ACGGTATCGTCGTATTTGCC+GGG 0.502188 3_1:+87280583 None:intergenic
CAATATACAAAGAAAGGCAT+TGG 0.510644 3_1:-87281063 Msa0384220:five_prime_UTR
ATACGACGATACCGTGCCCT+TGG 0.513413 3_1:-87280575 Msa0384220:CDS
GACACTTTGTAATAAAACAT+TGG 0.518073 3_1:-87281189 Msa0384220:five_prime_UTR
GGGTTCTCTAATGGCAGGAT+GGG 0.519019 3_1:-87280971 Msa0384220:CDS
TGGGTTCTCTAATGGCAGGA+TGG 0.562729 3_1:-87280972 Msa0384220:CDS
ATATTTCAGAATCACTTGAA+AGG 0.563841 3_1:-87280842 Msa0384220:intron
TCAATGGGTTCTCTAATGGC+AGG 0.564446 3_1:-87280976 Msa0384220:CDS
CATGAAGAAATCATTTGGCA+TGG 0.570197 3_1:-87280545 Msa0384220:CDS
CAAATGATTTCTTCATGGGG+CGG 0.572003 3_1:+87280551 None:intergenic
CAGATATGTTTCTGCTGCCG+AGG 0.573974 3_1:+87281217 None:intergenic
CAGTATCACGTAGCCAACTT+GGG 0.576698 3_1:-87280234 Msa0384220:CDS
ATACTGCGATGCATACTTGT+TGG 0.576932 3_1:+87280251 None:intergenic
TCTGAATGAACCTCCAGTGA+TGG 0.578917 3_1:-87280283 Msa0384220:CDS
GTAGGAGCTTCCATCACTGG+AGG 0.595410 3_1:+87280273 None:intergenic
GAATTAGTGCTTGTTCCGAA+TGG 0.599911 3_1:-87280185 Msa0384220:CDS
AACGTAACGTGCTTGTGTAG+TGG 0.601346 3_1:+87281140 None:intergenic
TGCCAAATGATTTCTTCATG+GGG 0.625447 3_1:+87280548 None:intergenic
TCAAAATTAAACACAGGACA+TGG 0.627591 3_1:-87280207 Msa0384220:CDS
TGCGATGCATACTTGTTGGT+AGG 0.629639 3_1:+87280255 None:intergenic
GAGATCAAAGAAGGAGACAG+AGG 0.641594 3_1:-87280781 Msa0384220:CDS
GGATCATCAAAATTAAACAC+AGG 0.655378 3_1:-87280213 Msa0384220:CDS
CAGGTGGACCAAGAGCAACT+GGG 0.675150 3_1:-87280310 Msa0384220:CDS
TCAACAATACATGTATACCT+CGG 0.696555 3_1:-87281234 Msa0384220:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTACATTTATATATTGTAAA+GGG + chr3_1:87281243-87281262 None:intergenic 10.0%
!! TTACATTTATATATTGTAAA+GGG + chr3_1:87281243-87281262 None:intergenic 10.0%
!! TATATATTGATCTTATTACT+TGG - chr3_1:87280269-87280288 Msa0384220:CDS 15.0%
!! AATTCATTTCGATATTTAAT+TGG - chr3_1:87280772-87280791 Msa0384220:CDS 15.0%
!! CTTAAAAATATGAAGAAAAA+TGG - chr3_1:87280883-87280902 Msa0384220:intron 15.0%
!! CTTTATATTGAATTTGAATA+TGG - chr3_1:87281033-87281052 Msa0384220:five_prime_UTR 15.0%
!! GTTACATTTATATATTGTAA+AGG + chr3_1:87281244-87281263 None:intergenic 15.0%
!! TATATATTGATCTTATTACT+TGG - chr3_1:87280269-87280288 Msa0384220:CDS 15.0%
!! AATTCATTTCGATATTTAAT+TGG - chr3_1:87280772-87280791 Msa0384220:CDS 15.0%
!! CTTAAAAATATGAAGAAAAA+TGG - chr3_1:87280883-87280902 Msa0384220:intron 15.0%
!! CTTTATATTGAATTTGAATA+TGG - chr3_1:87281033-87281052 Msa0384220:five_prime_UTR 15.0%
!! GTTACATTTATATATTGTAA+AGG + chr3_1:87281244-87281263 None:intergenic 15.0%
!! ATTAATTAAGTACCTGATTT+AGG + chr3_1:87280454-87280473 None:intergenic 20.0%
!!! AAGTTATTTCCAATTTATCA+AGG - chr3_1:87280636-87280655 Msa0384220:intron 20.0%
!!! TTAAAAGTATTCATGACAAT+TGG + chr3_1:87280999-87281018 None:intergenic 20.0%
!!! TGTCATGAATACTTTTAATT+TGG - chr3_1:87281001-87281020 Msa0384220:five_prime_UTR 20.0%
!! ATTAATTAAGTACCTGATTT+AGG + chr3_1:87280454-87280473 None:intergenic 20.0%
!!! AAGTTATTTCCAATTTATCA+AGG - chr3_1:87280636-87280655 Msa0384220:intron 20.0%
!!! TTAAAAGTATTCATGACAAT+TGG + chr3_1:87280999-87281018 None:intergenic 20.0%
!!! TGTCATGAATACTTTTAATT+TGG - chr3_1:87281001-87281020 Msa0384220:five_prime_UTR 20.0%
! GTATACATGTATTGTTGATA+AGG + chr3_1:87280146-87280165 None:intergenic 25.0%
! GACACTTTGTAATAAAACAT+TGG - chr3_1:87280193-87280212 Msa0384220:CDS 25.0%
! AGTCAACAATATACAAAGAA+AGG - chr3_1:87280313-87280332 Msa0384220:intron 25.0%
! ATATTTCAGAATCACTTGAA+AGG - chr3_1:87280540-87280559 Msa0384220:CDS 25.0%
! AAAATATGAAGAAAAATGGC+TGG - chr3_1:87280887-87280906 Msa0384220:intron 25.0%
! AATTTGAATATGGTTGCATT+GGG - chr3_1:87281043-87281062 Msa0384220:five_prime_UTR 25.0%
! TTAGATTTAGATAGACCATT+CGG + chr3_1:87281215-87281234 None:intergenic 25.0%
! CATTTATATATTGTAAAGGG+TGG + chr3_1:87281240-87281259 None:intergenic 25.0%
! GTATACATGTATTGTTGATA+AGG + chr3_1:87280146-87280165 None:intergenic 25.0%
! GACACTTTGTAATAAAACAT+TGG - chr3_1:87280193-87280212 Msa0384220:CDS 25.0%
! AGTCAACAATATACAAAGAA+AGG - chr3_1:87280313-87280332 Msa0384220:intron 25.0%
! ATATTTCAGAATCACTTGAA+AGG - chr3_1:87280540-87280559 Msa0384220:CDS 25.0%
! AAAATATGAAGAAAAATGGC+TGG - chr3_1:87280887-87280906 Msa0384220:intron 25.0%
! AATTTGAATATGGTTGCATT+GGG - chr3_1:87281043-87281062 Msa0384220:five_prime_UTR 25.0%
! TTAGATTTAGATAGACCATT+CGG + chr3_1:87281215-87281234 None:intergenic 25.0%
! CATTTATATATTGTAAAGGG+TGG + chr3_1:87281240-87281259 None:intergenic 25.0%
TCAACAATACATGTATACCT+CGG - chr3_1:87280148-87280167 Msa0384220:three_prime_UTR 30.0%
! CAATATACAAAGAAAGGCAT+TGG - chr3_1:87280319-87280338 Msa0384220:intron 30.0%
! TTGGAATTAAGAGTGTGATT+TGG - chr3_1:87280338-87280357 Msa0384220:intron 30.0%
!! GAAAGCATCAATTTCTTCTT+TGG + chr3_1:87280579-87280598 None:intergenic 30.0%
AAGAAGAAATTGATGCTTTC+TGG - chr3_1:87280579-87280598 Msa0384220:CDS 30.0%
CTGAATAGTCCTTGATAAAT+TGG + chr3_1:87280648-87280667 None:intergenic 30.0%
CAATTTATCAAGGACTATTC+AGG - chr3_1:87280646-87280665 Msa0384220:intron 30.0%
ATGCCAAATGATTTCTTCAT+GGG + chr3_1:87280838-87280857 None:intergenic 30.0%
CATGGATGTTGACAAAAATA+TGG - chr3_1:87280855-87280874 Msa0384220:intron 30.0%
! GTTTTCTAACGACTAACAAT+TGG + chr3_1:87280928-87280947 None:intergenic 30.0%
GAATTTGAATATGGTTGCAT+TGG - chr3_1:87281042-87281061 Msa0384220:five_prime_UTR 30.0%
!! TAATTTTGATGATCCCAAGT+TGG + chr3_1:87281164-87281183 None:intergenic 30.0%
GGATCATCAAAATTAAACAC+AGG - chr3_1:87281169-87281188 Msa0384220:five_prime_UTR 30.0%
TCAAAATTAAACACAGGACA+TGG - chr3_1:87281175-87281194 Msa0384220:five_prime_UTR 30.0%
! TTGTTGATAAGGATGAATGA+TGG + chr3_1:87280135-87280154 None:intergenic 30.0%
TCAACAATACATGTATACCT+CGG - chr3_1:87280148-87280167 Msa0384220:three_prime_UTR 30.0%
! CAATATACAAAGAAAGGCAT+TGG - chr3_1:87280319-87280338 Msa0384220:intron 30.0%
! TTGGAATTAAGAGTGTGATT+TGG - chr3_1:87280338-87280357 Msa0384220:intron 30.0%
!! GAAAGCATCAATTTCTTCTT+TGG + chr3_1:87280579-87280598 None:intergenic 30.0%
AAGAAGAAATTGATGCTTTC+TGG - chr3_1:87280579-87280598 Msa0384220:CDS 30.0%
CTGAATAGTCCTTGATAAAT+TGG + chr3_1:87280648-87280667 None:intergenic 30.0%
CAATTTATCAAGGACTATTC+AGG - chr3_1:87280646-87280665 Msa0384220:intron 30.0%
ATGCCAAATGATTTCTTCAT+GGG + chr3_1:87280838-87280857 None:intergenic 30.0%
CATGGATGTTGACAAAAATA+TGG - chr3_1:87280855-87280874 Msa0384220:intron 30.0%
! GTTTTCTAACGACTAACAAT+TGG + chr3_1:87280928-87280947 None:intergenic 30.0%
GAATTTGAATATGGTTGCAT+TGG - chr3_1:87281042-87281061 Msa0384220:five_prime_UTR 30.0%
!! TAATTTTGATGATCCCAAGT+TGG + chr3_1:87281164-87281183 None:intergenic 30.0%
GGATCATCAAAATTAAACAC+AGG - chr3_1:87281169-87281188 Msa0384220:five_prime_UTR 30.0%
TCAAAATTAAACACAGGACA+TGG - chr3_1:87281175-87281194 Msa0384220:five_prime_UTR 30.0%
ATTCAGCAGCAATCAATCAA+TGG - chr3_1:87280390-87280409 Msa0384220:intron 35.0%
TTCAGCAGCAATCAATCAAT+GGG - chr3_1:87280391-87280410 Msa0384220:intron 35.0%
! TCAATCAATGGGTTCTCTAA+TGG - chr3_1:87280402-87280421 Msa0384220:intron 35.0%
TTGTCTTTATGCTCTGTGTT+TGG - chr3_1:87280497-87280516 Msa0384220:CDS 35.0%
CAGAATCACTTGAAAGGAAT+CGG - chr3_1:87280546-87280565 Msa0384220:CDS 35.0%
TGCCAAATGATTTCTTCATG+GGG + chr3_1:87280837-87280856 None:intergenic 35.0%
CATGCCAAATGATTTCTTCA+TGG + chr3_1:87280839-87280858 None:intergenic 35.0%
CATGAAGAAATCATTTGGCA+TGG - chr3_1:87280837-87280856 Msa0384220:intron 35.0%
! ATGGCTGGTAAATTTTCTCA+TGG - chr3_1:87280902-87280921 Msa0384220:intron 35.0%
AAGTCTGCAAGTAGTTGAAT+TGG + chr3_1:87280973-87280992 None:intergenic 35.0%
ATTCAACTACTTGCAGACTT+AGG - chr3_1:87280973-87280992 Msa0384220:CDS 35.0%
ATTCAGCAGCAATCAATCAA+TGG - chr3_1:87280390-87280409 Msa0384220:intron 35.0%
TTCAGCAGCAATCAATCAAT+GGG - chr3_1:87280391-87280410 Msa0384220:intron 35.0%
! TCAATCAATGGGTTCTCTAA+TGG - chr3_1:87280402-87280421 Msa0384220:intron 35.0%
TTGTCTTTATGCTCTGTGTT+TGG - chr3_1:87280497-87280516 Msa0384220:CDS 35.0%
CAGAATCACTTGAAAGGAAT+CGG - chr3_1:87280546-87280565 Msa0384220:CDS 35.0%
TGCCAAATGATTTCTTCATG+GGG + chr3_1:87280837-87280856 None:intergenic 35.0%
CATGCCAAATGATTTCTTCA+TGG + chr3_1:87280839-87280858 None:intergenic 35.0%
CATGAAGAAATCATTTGGCA+TGG - chr3_1:87280837-87280856 Msa0384220:intron 35.0%
! ATGGCTGGTAAATTTTCTCA+TGG - chr3_1:87280902-87280921 Msa0384220:intron 35.0%
AAGTCTGCAAGTAGTTGAAT+TGG + chr3_1:87280973-87280992 None:intergenic 35.0%
ATTCAACTACTTGCAGACTT+AGG - chr3_1:87280973-87280992 Msa0384220:CDS 35.0%
CACACAACTGATCCTAAATC+AGG - chr3_1:87280439-87280458 Msa0384220:intron 40.0%
! TGCTTTCTGGAGATCAAAGA+AGG - chr3_1:87280592-87280611 Msa0384220:intron 40.0%
CGATATTTAATTGGACAGCC+CGG - chr3_1:87280781-87280800 Msa0384220:CDS 40.0%
AAATGATTTCTTCATGGGGC+GGG + chr3_1:87280833-87280852 None:intergenic 40.0%
CAAATGATTTCTTCATGGGG+CGG + chr3_1:87280834-87280853 None:intergenic 40.0%
ATACTGCGATGCATACTTGT+TGG + chr3_1:87281134-87281153 None:intergenic 40.0%
GAATTAGTGCTTGTTCCGAA+TGG - chr3_1:87281197-87281216 Msa0384220:five_prime_UTR 40.0%
CACACAACTGATCCTAAATC+AGG - chr3_1:87280439-87280458 Msa0384220:intron 40.0%
! TGCTTTCTGGAGATCAAAGA+AGG - chr3_1:87280592-87280611 Msa0384220:intron 40.0%
CGATATTTAATTGGACAGCC+CGG - chr3_1:87280781-87280800 Msa0384220:CDS 40.0%
AAATGATTTCTTCATGGGGC+GGG + chr3_1:87280833-87280852 None:intergenic 40.0%
CAAATGATTTCTTCATGGGG+CGG + chr3_1:87280834-87280853 None:intergenic 40.0%
ATACTGCGATGCATACTTGT+TGG + chr3_1:87281134-87281153 None:intergenic 40.0%
GAATTAGTGCTTGTTCCGAA+TGG - chr3_1:87281197-87281216 Msa0384220:five_prime_UTR 40.0%
AACGTAACGTGCTTGTGTAG+TGG + chr3_1:87280245-87280264 None:intergenic 45.0%
! TCAATGGGTTCTCTAATGGC+AGG - chr3_1:87280406-87280425 Msa0384220:intron 45.0%
! ATGCTCTGTGTTTGGCTTCA+CGG - chr3_1:87280505-87280524 Msa0384220:CDS 45.0%
GAGATCAAAGAAGGAGACAG+AGG - chr3_1:87280601-87280620 Msa0384220:intron 45.0%
CGCCCCATGAAGAAATCATT+TGG - chr3_1:87280832-87280851 Msa0384220:CDS 45.0%
TCTGAATGAACCTCCAGTGA+TGG - chr3_1:87281099-87281118 Msa0384220:five_prime_UTR 45.0%
! TGCGATGCATACTTGTTGGT+AGG + chr3_1:87281130-87281149 None:intergenic 45.0%
CAGTATCACGTAGCCAACTT+GGG - chr3_1:87281148-87281167 Msa0384220:five_prime_UTR 45.0%
AACGTAACGTGCTTGTGTAG+TGG + chr3_1:87280245-87280264 None:intergenic 45.0%
! TCAATGGGTTCTCTAATGGC+AGG - chr3_1:87280406-87280425 Msa0384220:intron 45.0%
! ATGCTCTGTGTTTGGCTTCA+CGG - chr3_1:87280505-87280524 Msa0384220:CDS 45.0%
GAGATCAAAGAAGGAGACAG+AGG - chr3_1:87280601-87280620 Msa0384220:intron 45.0%
CGCCCCATGAAGAAATCATT+TGG - chr3_1:87280832-87280851 Msa0384220:CDS 45.0%
TCTGAATGAACCTCCAGTGA+TGG - chr3_1:87281099-87281118 Msa0384220:five_prime_UTR 45.0%
! TGCGATGCATACTTGTTGGT+AGG + chr3_1:87281130-87281149 None:intergenic 45.0%
CAGTATCACGTAGCCAACTT+GGG - chr3_1:87281148-87281167 Msa0384220:five_prime_UTR 45.0%
! CAGATATGTTTCTGCTGCCG+AGG + chr3_1:87280168-87280187 None:intergenic 50.0%
TGGGTTCTCTAATGGCAGGA+TGG - chr3_1:87280410-87280429 Msa0384220:intron 50.0%
GGGTTCTCTAATGGCAGGAT+GGG - chr3_1:87280411-87280430 Msa0384220:intron 50.0%
ACGGTATCGTCGTATTTGCC+GGG + chr3_1:87280802-87280821 None:intergenic 50.0%
CACGGTATCGTCGTATTTGC+CGG + chr3_1:87280803-87280822 None:intergenic 50.0%
TTGGTAGGAGCTTCCATCAC+TGG + chr3_1:87281115-87281134 None:intergenic 50.0%
GCAGTATCACGTAGCCAACT+TGG - chr3_1:87281147-87281166 Msa0384220:five_prime_UTR 50.0%
! CAGATATGTTTCTGCTGCCG+AGG + chr3_1:87280168-87280187 None:intergenic 50.0%
TGGGTTCTCTAATGGCAGGA+TGG - chr3_1:87280410-87280429 Msa0384220:intron 50.0%
GGGTTCTCTAATGGCAGGAT+GGG - chr3_1:87280411-87280430 Msa0384220:intron 50.0%
ACGGTATCGTCGTATTTGCC+GGG + chr3_1:87280802-87280821 None:intergenic 50.0%
CACGGTATCGTCGTATTTGC+CGG + chr3_1:87280803-87280822 None:intergenic 50.0%
TTGGTAGGAGCTTCCATCAC+TGG + chr3_1:87281115-87281134 None:intergenic 50.0%
GCAGTATCACGTAGCCAACT+TGG - chr3_1:87281147-87281166 Msa0384220:five_prime_UTR 50.0%
ATACGACGATACCGTGCCCT+TGG - chr3_1:87280807-87280826 Msa0384220:CDS 55.0%
TGGTTGCATTGGGTGAGTGC+AGG - chr3_1:87281053-87281072 Msa0384220:five_prime_UTR 55.0%
TTGCATTGGGTGAGTGCAGG+TGG - chr3_1:87281056-87281075 Msa0384220:five_prime_UTR 55.0%
CAGGTGGACCAAGAGCAACT+GGG - chr3_1:87281072-87281091 Msa0384220:five_prime_UTR 55.0%
CAGAAACGCCCAGTTGCTCT+TGG + chr3_1:87281083-87281102 None:intergenic 55.0%
GTAGGAGCTTCCATCACTGG+AGG + chr3_1:87281112-87281131 None:intergenic 55.0%
ATACGACGATACCGTGCCCT+TGG - chr3_1:87280807-87280826 Msa0384220:CDS 55.0%
TGGTTGCATTGGGTGAGTGC+AGG - chr3_1:87281053-87281072 Msa0384220:five_prime_UTR 55.0%
TTGCATTGGGTGAGTGCAGG+TGG - chr3_1:87281056-87281075 Msa0384220:five_prime_UTR 55.0%
CAGGTGGACCAAGAGCAACT+GGG - chr3_1:87281072-87281091 Msa0384220:five_prime_UTR 55.0%
CAGAAACGCCCAGTTGCTCT+TGG + chr3_1:87281083-87281102 None:intergenic 55.0%
GTAGGAGCTTCCATCACTGG+AGG + chr3_1:87281112-87281131 None:intergenic 55.0%
TTCTTCATGGGGCGGGCCAA+GGG + chr3_1:87280826-87280845 None:intergenic 60.0%
TTTCTTCATGGGGCGGGCCA+AGG + chr3_1:87280827-87280846 None:intergenic 60.0%
GCAGGTGGACCAAGAGCAAC+TGG - chr3_1:87281071-87281090 Msa0384220:five_prime_UTR 60.0%
TTCTTCATGGGGCGGGCCAA+GGG + chr3_1:87280826-87280845 None:intergenic 60.0%
TTTCTTCATGGGGCGGGCCA+AGG + chr3_1:87280827-87280846 None:intergenic 60.0%
GCAGGTGGACCAAGAGCAAC+TGG - chr3_1:87281071-87281090 Msa0384220:five_prime_UTR 60.0%
CATGGGGCGGGCCAAGGGCA+CGG + chr3_1:87280821-87280840 None:intergenic 75.0%
CATGGGGCGGGCCAAGGGCA+CGG + chr3_1:87280821-87280840 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 87280133 87281271 87280133 ID=Msa0384220;Name=Msa0384220
chr3_1 mRNA 87280133 87281271 87280133 ID=Msa0384220-mRNA-1;Parent=Msa0384220;Name=Msa0384220-mRNA-1;_AED=0.30;_eAED=0.30;_QI=276|1|1|1|1|1|4|43|144
chr3_1 exon 87280133 87280329 87280133 ID=Msa0384220-mRNA-1:exon:23296;Parent=Msa0384220-mRNA-1
chr3_1 exon 87280496 87280605 87280496 ID=Msa0384220-mRNA-1:exon:23295;Parent=Msa0384220-mRNA-1
chr3_1 exon 87280737 87280855 87280737 ID=Msa0384220-mRNA-1:exon:23294;Parent=Msa0384220-mRNA-1
chr3_1 exon 87280944 87281271 87280944 ID=Msa0384220-mRNA-1:exon:23293;Parent=Msa0384220-mRNA-1
chr3_1 five_prime_UTR 87280996 87281271 87280996 ID=Msa0384220-mRNA-1:five_prime_utr;Parent=Msa0384220-mRNA-1
chr3_1 CDS 87280944 87280995 87280944 ID=Msa0384220-mRNA-1:cds;Parent=Msa0384220-mRNA-1
chr3_1 CDS 87280737 87280855 87280737 ID=Msa0384220-mRNA-1:cds;Parent=Msa0384220-mRNA-1
chr3_1 CDS 87280496 87280605 87280496 ID=Msa0384220-mRNA-1:cds;Parent=Msa0384220-mRNA-1
chr3_1 CDS 87280176 87280329 87280176 ID=Msa0384220-mRNA-1:cds;Parent=Msa0384220-mRNA-1
chr3_1 three_prime_UTR 87280133 87280175 87280133 ID=Msa0384220-mRNA-1:three_prime_utr;Parent=Msa0384220-mRNA-1
Gene Sequence

>Msa0384220

ATGGGTTCTCTAATGGCAGGATGGGACTCTCACACAACTGATCCTAAATCAGAATCACTTGAAAGGAATCGGTCACTCACCAAAGAAGAAATTGATGCTTTCTGGAGATCAAAGAAGGAGACAGAGGATGAACACGTCAAAGTTATTTCCAATTTATCAAGGACTATTCAGCCCGGCAAATACGACGATACCGTGCCCTTGGCCCGCCCCATGAAGAAATCATTTGGCATGGATGTTGACAAAAATATGGAGCAGCTTAAAAATATGAAGAAAAATGGCTGGTGGACCAAGAGCAACTGGGCGTTTCTGAATGAACCTCCAGTGATGGAAGCTCCTACCAACAAGTATGCATCGCAGTATCACGTAGCCAACTTGGGATCATCAAAATTAAACACAGGACATGGAATTAGTGCTTGTTCCGAATGGTCTATCTAA
Protein sequence

>Msa0384220

MGSLMAGWDSHTTDPKSESLERNRSLTKEEIDAFWRSKKETEDEHVKVISNLSRTIQPGKYDDTVPLARPMKKSFGMDVDKNMEQLKNMKKNGWWTKSNWAFLNEPPVMEAPTNKYASQYHVANLGSSKLNTGHGISACSEWSI*