AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0479220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479220 MtrunA17_Chr3g0141941 89.325 459 43 2 1 459 1 453 0.0 853
Msa0479220 MtrunA17_Chr3g0141941 93.103 87 4 2 508 592 431 517 4.53e-43 161
Msa0479220 MtrunA17_Chr1g0155681 61.420 648 173 19 1 592 1 627 0.0 697
Msa0479220 MtrunA17_Chr1g0177751 55.556 279 109 5 162 430 161 434 2.22e-85 279
Msa0479220 MtrunA17_Chr4g0025521 55.357 280 112 5 162 434 217 490 6.60e-85 279
Msa0479220 MtrunA17_Chr7g0267481 54.717 265 110 4 163 420 172 433 1.81e-80 266
Msa0479220 MtrunA17_Chr8g0373801 50.000 274 120 5 158 420 384 651 3.28e-80 269
Msa0479220 MtrunA17_Chr5g0403251 50.183 273 119 4 161 423 337 602 3.41e-80 268
Msa0479220 MtrunA17_Chr8g0387321 47.203 286 117 7 141 408 163 432 5.73e-75 250
Msa0479220 MtrunA17_Chr3g0141931 45.392 293 126 6 156 431 159 434 2.12e-70 233
Msa0479220 MtrunA17_Chr7g0240371 36.795 337 176 8 158 489 133 437 5.82e-60 207
Msa0479220 MtrunA17_Chr4g0008591 42.366 262 124 3 158 415 192 430 1.76e-58 206
Msa0479220 MtrunA17_Chr2g0327021 39.550 311 141 6 158 443 244 532 3.82e-57 202
Msa0479220 MtrunA17_Chr4g0028701 42.000 300 132 7 158 415 241 540 1.94e-56 201
Msa0479220 MtrunA17_Chr1g0151681 39.847 261 145 6 159 414 240 493 3.65e-44 164
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0479220 AT1G75410.1 48.148 405 178 8 35 430 50 431 1.03e-106 331
Msa0479220 AT1G75410.2 48.148 405 178 8 35 430 50 431 1.03e-106 331
Msa0479220 AT1G19700.1 48.434 415 169 13 34 428 46 435 1.55e-106 331
Msa0479220 AT1G19700.3 48.434 415 169 13 34 428 46 435 1.55e-106 331
Msa0479220 AT1G19700.5 48.434 415 169 13 34 428 46 435 1.55e-106 331
Msa0479220 AT1G19700.4 48.434 415 169 13 34 428 46 435 1.55e-106 331
Msa0479220 AT1G19700.2 48.434 415 169 13 34 428 46 435 1.55e-106 331
Msa0479220 AT2G16400.1 44.301 465 171 14 141 592 93 482 2.72e-106 329
Msa0479220 AT4G34610.2 44.898 441 179 15 165 592 143 532 2.86e-101 317
Msa0479220 AT4G34610.4 44.898 441 179 15 165 592 143 532 2.86e-101 317
Msa0479220 AT4G34610.3 44.898 441 179 15 165 592 143 532 2.86e-101 317
Msa0479220 AT4G34610.1 44.898 441 179 15 165 592 143 532 2.86e-101 317
Msa0479220 AT1G75410.3 46.049 367 166 8 35 392 50 393 1.48e-85 272
Msa0479220 AT2G23760.2 52.290 262 103 5 165 413 240 492 3.99e-78 259
Msa0479220 AT2G23760.1 52.290 262 103 5 165 413 240 492 3.99e-78 259
Msa0479220 AT2G23760.3 52.290 262 103 5 165 413 240 492 3.99e-78 259
Msa0479220 AT2G35940.3 39.765 425 205 12 158 536 186 605 3.74e-77 258
Msa0479220 AT2G35940.1 39.765 425 205 12 158 536 186 605 3.74e-77 258
Msa0479220 AT2G35940.2 39.765 425 205 12 158 536 186 605 3.74e-77 258
Msa0479220 AT4G36870.2 49.064 267 113 5 161 414 311 567 3.98e-74 251
Msa0479220 AT4G36870.1 49.064 267 113 5 161 414 311 567 3.98e-74 251
Msa0479220 AT2G23760.4 43.631 314 103 6 165 413 240 544 4.51e-68 234
Msa0479220 AT2G27220.1 46.185 249 101 5 168 415 82 298 6.85e-66 221
Msa0479220 AT2G27220.3 46.185 249 101 5 168 415 82 298 6.85e-66 221
Msa0479220 AT2G27220.2 43.446 267 100 7 168 415 82 316 2.44e-62 213
Msa0479220 AT5G41410.1 39.319 323 146 7 232 538 265 553 2.28e-61 214
Msa0479220 AT1G75430.1 41.241 274 130 7 163 419 17 276 7.85e-61 204
Msa0479220 AT4G36870.4 45.935 246 110 5 161 393 311 546 1.29e-58 205
Msa0479220 AT4G36870.3 45.902 244 109 5 161 391 311 544 1.01e-57 203
Msa0479220 AT5G02030.1 42.701 274 120 6 158 415 166 418 1.08e-54 195
Msa0479220 AT2G27990.1 43.346 263 118 8 158 415 258 494 4.69e-51 185
Msa0479220 AT4G32980.1 37.736 265 141 5 156 414 195 441 3.36e-44 164
Msa0479220 AT4G32980.2 37.736 265 141 5 156 414 195 441 3.36e-44 164
Msa0479220 AT1G75430.2 34.071 226 118 7 163 371 17 228 6.72e-29 117
Msa0479220 AT2G27990.2 36.073 219 109 8 158 371 258 450 2.47e-25 109

Find 148 sgRNAs with CRISPR-Local

Find 255 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCATCTTTGGACATGGTTGC+TGG 0.171008 3_3:-84088750 Msa0479220:CDS
AAAGCACATTATGATTATTA+TGG 0.217888 3_3:+84090021 None:intergenic
AGGAGTTAATATTATTTAAT+TGG 0.235821 3_3:-84090949 Msa0479220:five_prime_UTR
GACTATCATTTCACAGATTC+AGG 0.242730 3_3:-84087561 Msa0479220:CDS
TTAATGCACGTGTGCGTCTT+TGG 0.261906 3_3:-84088073 Msa0479220:CDS
AGAGATTAATAGTAATAAAT+TGG 0.292200 3_3:-84087946 Msa0479220:CDS
GCAAATTGTGGTGTCATCTT+TGG 0.309506 3_3:-84088763 Msa0479220:CDS
CCCAACCAAGCATTCTCTTC+AGG 0.317247 3_3:-84089824 Msa0479220:CDS
CATCTTTGGACATGGTTGCT+GGG 0.322770 3_3:-84088749 Msa0479220:CDS
CCTTAAGATATTGAGAGTTT+AGG 0.323728 3_3:+84089342 None:intergenic
CCTAAACTCTCAATATCTTA+AGG 0.324664 3_3:-84089342 Msa0479220:CDS
ATCCAACAAATTCTGTCTTT+CGG 0.327791 3_3:+84089127 None:intergenic
TTTCCATTCCATGTTGCTTT+CGG 0.331914 3_3:+84089285 None:intergenic
CTCCAAGGTAAAAGAGATTA+TGG 0.332690 3_3:-84087972 Msa0479220:CDS
GAAATATACAAAGAAGAGTT+TGG 0.368762 3_3:-84088035 Msa0479220:CDS
CGCAATGCAAGTGTAGTATA+TGG 0.380736 3_3:+84088711 None:intergenic
CACATATGATTTAACAGAGT+TGG 0.383789 3_3:-84087751 Msa0479220:CDS
ACATATACTCTCTCTGTTGT+TGG 0.390656 3_3:-84090868 Msa0479220:five_prime_UTR
CAGAGCAAGCAGAGTTTCAA+TGG 0.390687 3_3:+84090833 None:intergenic
AAGTGATTCAAAGGAACCTT+GGG 0.404482 3_3:-84088635 Msa0479220:CDS
ATTCTCTTCAGGGTCCTATA+TGG 0.406017 3_3:-84089813 Msa0479220:CDS
CAGTCTATGCAAATAACTTC+GGG 0.408568 3_3:-84089197 Msa0479220:CDS
GTTGCGAAAACACTCCCTTT+TGG 0.409394 3_3:+84089418 None:intergenic
TATGGTATCAGGTGGCAAAT+TGG 0.411576 3_3:-84088100 Msa0479220:intron
AATGTGATAGATTGTGGAAA+TGG 0.412066 3_3:-84087843 Msa0479220:CDS
TTGAGAGTTTAGGAAAATGT+TGG 0.412411 3_3:+84089352 None:intergenic
GGGAACAAGAACCTCACTTC+TGG 0.413629 3_3:+84089884 None:intergenic
CGAAACCGGTGTCATTATAC+TGG 0.413951 3_3:+84089555 None:intergenic
GGAAAGCAACAACACATGTT+TGG 0.421673 3_3:-84087540 Msa0479220:CDS
TCATTATACTGGTATTGAAA+TGG 0.422426 3_3:+84089566 None:intergenic
GTTAATATTATTTAATTGGT+TGG 0.422496 3_3:-84090945 Msa0479220:five_prime_UTR
CCAACCAAGCATTCTCTTCA+GGG 0.428447 3_3:-84089823 Msa0479220:CDS
ATAATAATATTACAGATGAT+TGG 0.428620 3_3:-84087280 Msa0479220:three_prime_UTR
AACTGGTTTGACAAGGAATC+AGG 0.432153 3_3:-84088238 Msa0479220:intron
ACATATGATTTAACAGAGTT+GGG 0.435731 3_3:-84087750 Msa0479220:CDS
CATTGAAACTCTGCTTGCTC+TGG 0.436708 3_3:-84090832 Msa0479220:intron
GTGATAAACTTAATAATGAT+TGG 0.437942 3_3:-84091053 Msa0479220:five_prime_UTR
CTGTTTCAATACTTCGTGCT+TGG 0.440367 3_3:-84088491 Msa0479220:CDS
TCCTTTGAATCACTTGAACT+TGG 0.447044 3_3:+84088643 None:intergenic
ATTCATCAGCGATACGAAAC+CGG 0.447145 3_3:+84089541 None:intergenic
ATAATGCTAGCTAGGCAAAC+TGG 0.452403 3_3:-84088255 Msa0479220:CDS
CCCTGAAGAGAATGCTTGGT+TGG 0.454991 3_3:+84089823 None:intergenic
TTGTATATTTCCTCAACCAT+TGG 0.456824 3_3:+84088047 None:intergenic
AGACATGCTTTCCATGCATT+CGG 0.460937 3_3:+84089463 None:intergenic
TTAGATATAGTAGTTCCCTT+TGG 0.461116 3_3:+84089506 None:intergenic
GTACCGTTCTTCCAATGATA+AGG 0.462927 3_3:-84090923 Msa0479220:five_prime_UTR
CAAAAGGCACTTCAGCATCT+TGG 0.463824 3_3:-84088561 Msa0479220:CDS
GGAGGGACAGATGCATTAGA+AGG 0.464657 3_3:+84089587 None:intergenic
CAAATTCTGTCTTTCGGCTG+AGG 0.466044 3_3:+84089133 None:intergenic
TGCATGGAAAGCATGTCTTC+CGG 0.466072 3_3:-84089458 Msa0479220:CDS
ATCTTTGGACATGGTTGCTG+GGG 0.467421 3_3:-84088748 Msa0479220:CDS
CAGAGAAAATAATGCTAGCT+AGG 0.467771 3_3:-84088263 Msa0479220:CDS
AAACAACAGCATATGGTTTG+AGG 0.471400 3_3:+84087421 None:intergenic
ACCAAGTTTAACACACCTAT+AGG 0.472281 3_3:-84089722 Msa0479220:CDS
AGACAAGATCAGCACTTGTT+GGG 0.477704 3_3:+84089864 None:intergenic
AGCCGAAAGACAGAATTTGT+TGG 0.478829 3_3:-84089129 Msa0479220:CDS
CGAGGTGAACATATCCATAT+AGG 0.479681 3_3:+84089799 None:intergenic
ATAGTCACTGTGTCGCCTAT+AGG 0.482382 3_3:+84089707 None:intergenic
CAAGTGATTCAAAGGAACCT+TGG 0.483068 3_3:-84088636 Msa0479220:CDS
TACATGTTGTCTAGTGGAAG+AGG 0.483872 3_3:+84087872 None:intergenic
CTCCTCAGATCACTGCCTGC+AGG 0.488491 3_3:-84089390 Msa0479220:CDS
GCCTATAGGTGTGTTAAACT+TGG 0.490982 3_3:+84089721 None:intergenic
GGTAATGTCATGAAATCCTC+CGG 0.496563 3_3:+84089439 None:intergenic
GGATATCTCACAAGAAGGAT+TGG 0.496624 3_3:+84089154 None:intergenic
AAGACCGACCACCTTATCAT+TGG 0.498200 3_3:+84090912 None:intergenic
TCAGTCTATGCAAATAACTT+CGG 0.500629 3_3:-84089198 Msa0479220:CDS
TCACAATGTCTCTCTTGCAT+TGG 0.504072 3_3:-84087697 Msa0479220:CDS
AGTTGGTGTTAAGCAAGTAA+AGG 0.504482 3_3:-84090969 Msa0479220:five_prime_UTR
AAGACAAGATCAGCACTTGT+TGG 0.508388 3_3:+84089863 None:intergenic
GGATTGGAATTAGAATCATT+AGG 0.508994 3_3:+84089170 None:intergenic
AGCATTGGAATGCTCATCAA+TGG 0.509427 3_3:+84089679 None:intergenic
CCAACAGCTTAGGCAACAAA+AGG 0.510811 3_3:-84088577 Msa0479220:CDS
CGAGACTAAGAGATAACTCT+TGG 0.512889 3_3:+84089621 None:intergenic
ACACCACAATTTGCATTCGA+TGG 0.516116 3_3:+84088772 None:intergenic
TACATGAGAGCTGTAAGCAT+TGG 0.517302 3_3:+84089664 None:intergenic
CCTGAAGAGAATGCTTGGTT+GGG 0.517326 3_3:+84089824 None:intergenic
GATTTCATGACATTACCAAA+AGG 0.521517 3_3:-84089433 Msa0479220:CDS
TCATCTGAAAATACACTCCA+AGG 0.523657 3_3:-84087987 Msa0479220:CDS
TGTCCGAAAGCAACATGGAA+TGG 0.523675 3_3:-84089288 Msa0479220:CDS
CAAGAGTTATCTCTTAGTCT+CGG 0.528666 3_3:-84089620 Msa0479220:CDS
AATTCTTGTCGTCTTCCAAA+GGG 0.529186 3_3:-84089521 Msa0479220:CDS
AAATATGTACTATAGGTAGT+TGG 0.530880 3_3:-84090986 Msa0479220:five_prime_UTR
GAATTCTTGTCGTCTTCCAA+AGG 0.533875 3_3:-84089522 Msa0479220:CDS
TAAGCTGTTGGTCCACGTAC+CGG 0.539458 3_3:+84088589 None:intergenic
AAGAGTTATCTCTTAGTCTC+GGG 0.540585 3_3:-84089619 Msa0479220:CDS
AGGACCCTGAAGAGAATGCT+TGG 0.541911 3_3:+84089819 None:intergenic
GTATTCCTTCTTGTTCCCCA+AGG 0.544341 3_3:+84088619 None:intergenic
ATTTCATGACATTACCAAAA+GGG 0.544569 3_3:-84089432 Msa0479220:CDS
TCTTTGGACATGGTTGCTGG+GGG 0.546073 3_3:-84088747 Msa0479220:CDS
ACCAAGTTCAAGTGATTCAA+AGG 0.549397 3_3:-84088644 Msa0479220:CDS
GGTACGTGGACCAACAGCTT+AGG 0.555219 3_3:-84088587 Msa0479220:CDS
TTGGTGTTATGCGGCAAGCA+TGG 0.558919 3_3:-84088542 Msa0479220:CDS
CACTGCCTGCAGGATTCACA+AGG 0.565086 3_3:-84089380 Msa0479220:CDS
ATTGAAAAGTGCCGAATGCA+TGG 0.565403 3_3:-84089474 Msa0479220:CDS
CAACTCTGTTAAATCATATG+TGG 0.566114 3_3:+84087752 None:intergenic
TAATAATAATAATCAGACAT+TGG 0.566437 3_3:-84087613 Msa0479220:CDS
TTCAGCATCTTGGTGTTATG+CGG 0.567244 3_3:-84088551 Msa0479220:CDS
GATAATCCCAAAGATAGTGA+TGG 0.570048 3_3:-84089233 Msa0479220:CDS
TTATACTGGTATTGAAATGG+AGG 0.572976 3_3:+84089569 None:intergenic
TTATTAAGTTTATCACGTGT+AGG 0.573657 3_3:+84091060 None:intergenic
AAGAAGGAATACCTCGTCTC+CGG 0.574564 3_3:-84088608 Msa0479220:CDS
AGGAACCTTGGGGAACAAGA+AGG 0.579072 3_3:-84088624 Msa0479220:CDS
AATACCTCGTCTCCGGTACG+TGG 0.579283 3_3:-84088601 Msa0479220:CDS
TTAAGTTTATCACGTGTAGG+AGG 0.579983 3_3:+84091063 None:intergenic
TCTTTGGAAACCAATGGTTG+AGG 0.583656 3_3:-84088057 Msa0479220:CDS
TTGAGAAACTGTGAAAGCGA+TGG 0.592333 3_3:-84087672 Msa0479220:CDS
GGTAACTTTACAACTGTGGA+TGG 0.593227 3_3:-84087729 Msa0479220:CDS
AACGTACAAAATATACAGAT+AGG 0.594200 3_3:-84087339 Msa0479220:three_prime_UTR
GTCTATGCAAATAACTTCGG+GGG 0.594987 3_3:-84089195 Msa0479220:CDS
TAGGAGGAAAGCGTGTGTGT+GGG 0.595295 3_3:+84091079 None:intergenic
ATGAATGGCATCATCAGATG+TGG 0.596558 3_3:+84087644 None:intergenic
CCACCTTATCATTGGAAGAA+CGG 0.601521 3_3:+84090920 None:intergenic
CAATACCAGTATAATGACAC+CGG 0.603044 3_3:-84089560 Msa0479220:CDS
GAAAATTGCATGGCAACCAA+AGG 0.604743 3_3:-84087821 Msa0479220:CDS
GTTAATGTCCGAAAGCAACA+TGG 0.605991 3_3:-84089293 Msa0479220:CDS
TCAATATCTTAAGGCTACAC+AGG 0.606571 3_3:-84089333 Msa0479220:CDS
GATTATCCAATCCAATGTTG+CGG 0.607575 3_3:+84089249 None:intergenic
GGCAGTGATCTGAGGAGTGA+GGG 0.610386 3_3:+84089396 None:intergenic
TTTACAACTGTGGATGGTGG+TGG 0.611372 3_3:-84087723 Msa0479220:CDS
TCTTCCAATGATAAGGTGGT+CGG 0.614462 3_3:-84090916 Msa0479220:five_prime_UTR
GGTTGATACCAGTTACCCCA+AGG 0.615136 3_3:-84088289 Msa0479220:intron
AACTTTACAACTGTGGATGG+TGG 0.616544 3_3:-84087726 Msa0479220:CDS
CTAGGCAAACTGGTTTGACA+AGG 0.616619 3_3:-84088245 Msa0479220:CDS
GCTGAGGATATCTCACAAGA+AGG 0.617588 3_3:+84089149 None:intergenic
GATTCATTGTAGTAATTGTG+AGG 0.618741 3_3:+84089764 None:intergenic
AGGCAGTGATCTGAGGAGTG+AGG 0.618773 3_3:+84089395 None:intergenic
TGGTCCACGTACCGGAGACG+AGG 0.620141 3_3:+84088597 None:intergenic
AGGAGGAAAGCGTGTGTGTG+GGG 0.621350 3_3:+84091080 None:intergenic
ATCCTGCAGGCAGTGATCTG+AGG 0.622811 3_3:+84089388 None:intergenic
TAGTAATTGTGAGGTAACAA+AGG 0.627033 3_3:+84089773 None:intergenic
TGTGGTGTCATCTTTGGACA+TGG 0.628842 3_3:-84088757 Msa0479220:CDS
CCGTTCTTCCAATGATAAGG+TGG 0.629055 3_3:-84090920 Msa0479220:five_prime_UTR
GTTGGGTAACTTTACAACTG+TGG 0.629995 3_3:-84087733 Msa0479220:CDS
TATGGTTACCTCATCCAACA+TGG 0.631595 3_3:+84089085 None:intergenic
GTAGGAGGAAAGCGTGTGTG+TGG 0.631947 3_3:+84091078 None:intergenic
TGTGGAAATGGAAAATTGCA+TGG 0.642335 3_3:-84087831 Msa0479220:CDS
TGTGCGTCTTTGGAAACCAA+TGG 0.645810 3_3:-84088063 Msa0479220:CDS
TTGTGAAGAGACCAGAAGTG+AGG 0.658155 3_3:-84089895 Msa0479220:five_prime_UTR
ATGCAAGAGAGACATTGTGA+TGG 0.664466 3_3:+84087700 None:intergenic
TATACTGGTATTGAAATGGA+GGG 0.666797 3_3:+84089570 None:intergenic
AAAGGTATCTTATCTCTGAG+AGG 0.672450 3_3:-84087451 Msa0479220:three_prime_UTR
GTGAGGTAACAAAGGACTCG+AGG 0.675570 3_3:+84089781 None:intergenic
CTGCCATCGAATGCAAATTG+TGG 0.686632 3_3:-84088775 Msa0479220:CDS
ATGGAAAGCATGTCTTCCGG+AGG 0.687343 3_3:-84089455 Msa0479220:CDS
TCTATGCAAATAACTTCGGG+GGG 0.707179 3_3:-84089194 Msa0479220:CDS
AGTCTATGCAAATAACTTCG+GGG 0.713697 3_3:-84089196 Msa0479220:CDS
AGTGATTCAAAGGAACCTTG+GGG 0.732244 3_3:-84088634 Msa0479220:CDS
CAAGCATGGAGACCTCAGAG+AGG 0.733220 3_3:-84088528 Msa0479220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATTTATTGGTAAAA+AGG + chr3_3:84087274-84087293 None:intergenic 10.0%
!!! TAGTACATATTTTTATTTAT+TGG + chr3_3:84087282-84087301 None:intergenic 10.0%
!! TAAATAAAAATATGTACTAT+AGG - chr3_3:84087283-84087302 Msa0479220:three_prime_UTR 10.0%
!! CATATAATTTATTTATATCA+TGG + chr3_3:84088056-84088075 None:intergenic 10.0%
!! TAAAAAATGAAAAATATCTT+TGG + chr3_3:84090803-84090822 None:intergenic 10.0%
!!! TATTTTTCATTTTTTACTAA+AGG - chr3_3:84090807-84090826 Msa0479220:intron 10.0%
!!! CAATTTTTTTTAAAAGAATA+AGG - chr3_3:84091037-84091056 Msa0479220:five_prime_UTR 10.0%
!! AGGAGTTAATATTATTTAAT+TGG - chr3_3:84087327-84087346 Msa0479220:three_prime_UTR 15.0%
!! GTTAATATTATTTAATTGGT+TGG - chr3_3:84087331-84087350 Msa0479220:three_prime_UTR 15.0%
!!! TCATTACAATCTTTTTTAAA+AGG + chr3_3:84087568-84087587 None:intergenic 15.0%
!! AATTTCAACTATAAAAAACA+AGG + chr3_3:84088084-84088103 None:intergenic 15.0%
!!! ATTAGTTTATAGATTATATC+AGG + chr3_3:84088161-84088180 None:intergenic 15.0%
!! TTATTATGGAATACAAAATA+CGG + chr3_3:84088244-84088263 None:intergenic 15.0%
!! ATACAAATTAAATCCATAAA+AGG + chr3_3:84089237-84089256 None:intergenic 15.0%
!!! TTATCATATCTAACTTTTAT+TGG - chr3_3:84089321-84089340 Msa0479220:CDS 15.0%
!!! ATCTTTTAATTTATATGGTA+TGG - chr3_3:84090158-84090177 Msa0479220:intron 15.0%
!! AGAGATTAATAGTAATAAAT+TGG - chr3_3:84090330-84090349 Msa0479220:intron 15.0%
!!! ATTATTATGTCTTTTATGAA+TGG + chr3_3:84090650-84090669 None:intergenic 15.0%
!! TAATAATAATAATCAGACAT+TGG - chr3_3:84090663-84090682 Msa0479220:intron 15.0%
!! ATAATAATATTACAGATGAT+TGG - chr3_3:84090996-84091015 Msa0479220:five_prime_UTR 15.0%
!! GTGATAAACTTAATAATGAT+TGG - chr3_3:84087223-84087242 Msa0479220:three_prime_UTR 20.0%
!! GGTAAAAAGGAATAAATAAT+TGG + chr3_3:84087261-84087280 None:intergenic 20.0%
!!! GTAAAAATTTTGCTAAAACA+GGG + chr3_3:84087866-84087885 None:intergenic 20.0%
!!! TGTAAAAATTTTGCTAAAAC+AGG + chr3_3:84087867-84087886 None:intergenic 20.0%
!!! TTTTATAGTTGAAATTACAC+TGG - chr3_3:84088088-84088107 Msa0479220:CDS 20.0%
!!! TAATGCTTTCTTTATGTTTT+TGG - chr3_3:84088177-84088196 Msa0479220:intron 20.0%
!! AAAGCACATTATGATTATTA+TGG + chr3_3:84088258-84088277 None:intergenic 20.0%
!! AAATTAAATCCATAAAAGGA+AGG + chr3_3:84089233-84089252 None:intergenic 20.0%
!! GTATTATAAAGTAACACATA+CGG + chr3_3:84089832-84089851 None:intergenic 20.0%
!! GAAAATATAAAATTGAGTGA+AGG + chr3_3:84089871-84089890 None:intergenic 20.0%
!!! ATATTTTCAATTAGTTGCAA+TGG - chr3_3:84089883-84089902 Msa0479220:five_prime_UTR 20.0%
!! TTCAACTTTCATTTCATAAT+TGG - chr3_3:84089966-84089985 Msa0479220:five_prime_UTR 20.0%
!!! GTGTCATCTTTTAATTTATA+TGG - chr3_3:84090153-84090172 Msa0479220:intron 20.0%
!! AATTTAAAAACAACAGCATA+TGG + chr3_3:84090865-84090884 None:intergenic 20.0%
! TTATTAAGTTTATCACGTGT+AGG + chr3_3:84087219-84087238 None:intergenic 25.0%
! AAATATGTACTATAGGTAGT+TGG - chr3_3:84087290-84087309 Msa0479220:three_prime_UTR 25.0%
! CATGTTCATTTATAATCATG+AGG - chr3_3:84087509-84087528 Msa0479220:CDS 25.0%
! AATTTATTTGAATGTTGCCA+AGG - chr3_3:84087716-84087735 Msa0479220:CDS 25.0%
! ACTATAAATCACATTTAGAG+AGG - chr3_3:84087902-84087921 Msa0479220:CDS 25.0%
! CTATAAATCACATTTAGAGA+GGG - chr3_3:84087903-84087922 Msa0479220:CDS 25.0%
! GTTATCATTTATTCAAATCC+GGG + chr3_3:84088018-84088037 None:intergenic 25.0%
! GGTTATCATTTATTCAAATC+CGG + chr3_3:84088019-84088038 None:intergenic 25.0%
! TGAATAAATGATAACCAAAC+AGG - chr3_3:84088023-84088042 Msa0479220:CDS 25.0%
! GAATAAATGATAACCAAACA+GGG - chr3_3:84088024-84088043 Msa0479220:CDS 25.0%
!! TCATTATACTGGTATTGAAA+TGG + chr3_3:84088713-84088732 None:intergenic 25.0%
! ATTTCATGACATTACCAAAA+GGG - chr3_3:84088844-84088863 Msa0479220:intron 25.0%
! AGTGCAAAAACTTTATCATA+AGG - chr3_3:84089273-84089292 Msa0479220:CDS 25.0%
!!! AAGTATTGAAACAGAGTTTT+CGG + chr3_3:84089779-84089798 None:intergenic 25.0%
! TGAAGGATTAGAAATTTAGA+GGG + chr3_3:84089854-84089873 None:intergenic 25.0%
!! ATTATTTTCTCTGAATCCTT+GGG + chr3_3:84090006-84090025 None:intergenic 25.0%
! AATTTATATGGTATGGTATC+AGG - chr3_3:84090165-84090184 Msa0479220:intron 25.0%
! GAAATATACAAAGAAGAGTT+TGG - chr3_3:84090241-84090260 Msa0479220:intron 25.0%
! GAAAAAAATGTGATAGATTG+TGG - chr3_3:84090427-84090446 Msa0479220:intron 25.0%
! ACATATGATTTAACAGAGTT+GGG - chr3_3:84090526-84090545 Msa0479220:intron 25.0%
!!! ATCACTTTTATGAACAATGA+GGG + chr3_3:84090907-84090926 None:intergenic 25.0%
! AACGTACAAAATATACAGAT+AGG - chr3_3:84090937-84090956 Msa0479220:five_prime_UTR 25.0%
GTTCATTTATAATCATGAGG+TGG - chr3_3:84087512-84087531 Msa0479220:CDS 30.0%
TGTATGTATGTAATGAGTGT+TGG - chr3_3:84087788-84087807 Msa0479220:CDS 30.0%
TCTCAACAATATCAAAAACC+CGG - chr3_3:84087997-84088016 Msa0479220:CDS 30.0%
!! ATACAAAATACGGTTTTTGG+AGG + chr3_3:84088234-84088253 None:intergenic 30.0%
! GGAATACAAAATACGGTTTT+TGG + chr3_3:84088237-84088256 None:intergenic 30.0%
!!! ACTTTTTCACACAATTGTCT+TGG + chr3_3:84088342-84088361 None:intergenic 30.0%
TAGTAATTGTGAGGTAACAA+AGG + chr3_3:84088506-84088525 None:intergenic 30.0%
GATTCATTGTAGTAATTGTG+AGG + chr3_3:84088515-84088534 None:intergenic 30.0%
! TATACTGGTATTGAAATGGA+GGG + chr3_3:84088709-84088728 None:intergenic 30.0%
! TTATACTGGTATTGAAATGG+AGG + chr3_3:84088710-84088729 None:intergenic 30.0%
TTAGATATAGTAGTTCCCTT+TGG + chr3_3:84088773-84088792 None:intergenic 30.0%
GATTTCATGACATTACCAAA+AGG - chr3_3:84088843-84088862 Msa0479220:intron 30.0%
TTGAGAGTTTAGGAAAATGT+TGG + chr3_3:84088927-84088946 None:intergenic 30.0%
CCTTAAGATATTGAGAGTTT+AGG + chr3_3:84088937-84088956 None:intergenic 30.0%
CCTAAACTCTCAATATCTTA+AGG - chr3_3:84088934-84088953 Msa0479220:intron 30.0%
! GATTTTCCATCACTATCTTT+GGG + chr3_3:84089052-84089071 None:intergenic 30.0%
! AGATTTTCCATCACTATCTT+TGG + chr3_3:84089053-84089072 None:intergenic 30.0%
TCAGTCTATGCAAATAACTT+CGG - chr3_3:84089078-84089097 Msa0479220:intron 30.0%
GGATTGGAATTAGAATCATT+AGG + chr3_3:84089109-84089128 None:intergenic 30.0%
ATCCAACAAATTCTGTCTTT+CGG + chr3_3:84089152-84089171 None:intergenic 30.0%
GGATGCAATGCTAAATAATA+TGG + chr3_3:84089212-84089231 None:intergenic 30.0%
GAATAATTGTCACACACTAT+CGG + chr3_3:84089371-84089390 None:intergenic 30.0%
! CTCTTCTTTTATTCCATAGT+TGG - chr3_3:84089390-84089409 Msa0479220:CDS 30.0%
!! AGTATTGAAACAGAGTTTTC+GGG + chr3_3:84089778-84089797 None:intergenic 30.0%
GTGAAGGATTAGAAATTTAG+AGG + chr3_3:84089855-84089874 None:intergenic 30.0%
! TTATTTTCTCTGAATCCTTG+GGG + chr3_3:84090005-84090024 None:intergenic 30.0%
! CATTATTTTCTCTGAATCCT+TGG + chr3_3:84090007-84090026 None:intergenic 30.0%
TTAAAAGATGACACCACAAT+TGG + chr3_3:84090147-84090166 None:intergenic 30.0%
TTGTATATTTCCTCAACCAT+TGG + chr3_3:84090232-84090251 None:intergenic 30.0%
! TTTTTCTACATGTTGTCTAG+TGG + chr3_3:84090413-84090432 None:intergenic 30.0%
AATGTGATAGATTGTGGAAA+TGG - chr3_3:84090433-84090452 Msa0479220:intron 30.0%
CAACTCTGTTAAATCATATG+TGG + chr3_3:84090527-84090546 None:intergenic 30.0%
CACATATGATTTAACAGAGT+TGG - chr3_3:84090525-84090544 Msa0479220:intron 30.0%
!! CATCACTTTTATGAACAATG+AGG + chr3_3:84090908-84090927 None:intergenic 30.0%
!!! ATTGGTTCTATTTTATCTGC+AGG - chr3_3:84091014-84091033 Msa0479220:five_prime_UTR 30.0%
TTAAGTTTATCACGTGTAGG+AGG + chr3_3:84087216-84087235 None:intergenic 35.0%
!! AGTTGGTGTTAAGCAAGTAA+AGG - chr3_3:84087307-84087326 Msa0479220:three_prime_UTR 35.0%
ACATATACTCTCTCTGTTGT+TGG - chr3_3:84087408-84087427 Msa0479220:three_prime_UTR 35.0%
TTATTGATGTGCGTGATAGA+AGG - chr3_3:84087596-84087615 Msa0479220:CDS 35.0%
TGTTCTATTCCTGATTGATC+AGG - chr3_3:84087836-84087855 Msa0479220:CDS 35.0%
GTTCTATTCCTGATTGATCA+GGG - chr3_3:84087837-84087856 Msa0479220:CDS 35.0%
GATATTGTTGAGACAGTGAT+GGG + chr3_3:84087990-84088009 None:intergenic 35.0%
TGATATTGTTGAGACAGTGA+TGG + chr3_3:84087991-84088010 None:intergenic 35.0%
GCTAGGCTAAAAAATATGCA+TGG + chr3_3:84088126-84088145 None:intergenic 35.0%
!! AAAATACGGTTTTTGGAGGT+GGG + chr3_3:84088230-84088249 None:intergenic 35.0%
ACCAAGTTTAACACACCTAT+AGG - chr3_3:84088554-84088573 Msa0479220:CDS 35.0%
CAAGAGTTATCTCTTAGTCT+CGG - chr3_3:84088656-84088675 Msa0479220:CDS 35.0%
AAGAGTTATCTCTTAGTCTC+GGG - chr3_3:84088657-84088676 Msa0479220:CDS 35.0%
CAATACCAGTATAATGACAC+CGG - chr3_3:84088716-84088735 Msa0479220:CDS 35.0%
AATTCTTGTCGTCTTCCAAA+GGG - chr3_3:84088755-84088774 Msa0479220:CDS 35.0%
TCAATATCTTAAGGCTACAC+AGG - chr3_3:84088943-84088962 Msa0479220:intron 35.0%
!! TTTCCATTCCATGTTGCTTT+CGG + chr3_3:84088994-84089013 None:intergenic 35.0%
CAAGAAAAAATCCGCAACAT+TGG - chr3_3:84089016-84089035 Msa0479220:intron 35.0%
AAAAATCCGCAACATTGGAT+TGG - chr3_3:84089021-84089040 Msa0479220:intron 35.0%
GATTATCCAATCCAATGTTG+CGG + chr3_3:84089030-84089049 None:intergenic 35.0%
GATAATCCCAAAGATAGTGA+TGG - chr3_3:84089043-84089062 Msa0479220:intron 35.0%
CAGTCTATGCAAATAACTTC+GGG - chr3_3:84089079-84089098 Msa0479220:intron 35.0%
AGTCTATGCAAATAACTTCG+GGG - chr3_3:84089080-84089099 Msa0479220:intron 35.0%
GCTGTCATAATAACCAACTA+TGG + chr3_3:84089406-84089425 None:intergenic 35.0%
TTATTATGACAGCGATGGTT+TGG - chr3_3:84089413-84089432 Msa0479220:CDS 35.0%
CTGTAATCCTTTCTTTGTAC+TGG - chr3_3:84089449-84089468 Msa0479220:CDS 35.0%
ACCAAGTTCAAGTGATTCAA+AGG - chr3_3:84089632-84089651 Msa0479220:CDS 35.0%
TCCTTTGAATCACTTGAACT+TGG + chr3_3:84089636-84089655 None:intergenic 35.0%
AAGTGATTCAAAGGAACCTT+GGG - chr3_3:84089641-84089660 Msa0479220:CDS 35.0%
CAGAGAAAATAATGCTAGCT+AGG - chr3_3:84090013-84090032 Msa0479220:five_prime_UTR 35.0%
! ACTTGTTGCATTGCATAATC+AGG - chr3_3:84090113-84090132 Msa0479220:intron 35.0%
TTATATGGTATGGTATCAGG+TGG - chr3_3:84090168-84090187 Msa0479220:intron 35.0%
TCATCTGAAAATACACTCCA+AGG - chr3_3:84090289-84090308 Msa0479220:intron 35.0%
CTCCAAGGTAAAAGAGATTA+TGG - chr3_3:84090304-84090323 Msa0479220:intron 35.0%
! GACCATAATCTCTTTTACCT+TGG + chr3_3:84090309-84090328 None:intergenic 35.0%
TGTGGAAATGGAAAATTGCA+TGG - chr3_3:84090445-84090464 Msa0479220:intron 35.0%
!!! CATTTTTTATGCTGAGCCTT+TGG + chr3_3:84090474-84090493 None:intergenic 35.0%
CAAAGGCTCAGCATAAAAAA+TGG - chr3_3:84090472-84090491 Msa0479220:intron 35.0%
GACTATCATTTCACAGATTC+AGG - chr3_3:84090715-84090734 Msa0479220:intron 35.0%
!! AAAGGTATCTTATCTCTGAG+AGG - chr3_3:84090825-84090844 Msa0479220:intron 35.0%
AAACAACAGCATATGGTTTG+AGG + chr3_3:84090858-84090877 None:intergenic 35.0%
GTACCGTTCTTCCAATGATA+AGG - chr3_3:84087353-84087372 Msa0479220:three_prime_UTR 40.0%
CCACCTTATCATTGGAAGAA+CGG + chr3_3:84087359-84087378 None:intergenic 40.0%
TCTTCCAATGATAAGGTGGT+CGG - chr3_3:84087360-84087379 Msa0479220:three_prime_UTR 40.0%
AGTCATGAGTGATGTGATGA+TGG - chr3_3:84087645-84087664 Msa0479220:CDS 40.0%
!! GAGTGATGTGATGATGGTAT+TGG - chr3_3:84087651-84087670 Msa0479220:CDS 40.0%
!! GTGATGATGGTATTGGTGAA+TGG - chr3_3:84087658-84087677 Msa0479220:CDS 40.0%
GAAACTATGTTCTGCACAAG+TGG - chr3_3:84087925-84087944 Msa0479220:CDS 40.0%
!!! AAGTGGAGTTGATGGTTTTC+TGG - chr3_3:84087942-84087961 Msa0479220:CDS 40.0%
TCAGGCTATTAGCATATGCT+AGG + chr3_3:84088143-84088162 None:intergenic 40.0%
!! AAATACGGTTTTTGGAGGTG+GGG + chr3_3:84088229-84088248 None:intergenic 40.0%
!! CAAAATACGGTTTTTGGAGG+TGG + chr3_3:84088231-84088250 None:intergenic 40.0%
AGACAAGATCAGCACTTGTT+GGG + chr3_3:84088415-84088434 None:intergenic 40.0%
AAGACAAGATCAGCACTTGT+TGG + chr3_3:84088416-84088435 None:intergenic 40.0%
ATTCTCTTCAGGGTCCTATA+TGG - chr3_3:84088463-84088482 Msa0479220:intron 40.0%
CGAGGTGAACATATCCATAT+AGG + chr3_3:84088480-84088499 None:intergenic 40.0%
GCCTATAGGTGTGTTAAACT+TGG + chr3_3:84088558-84088577 None:intergenic 40.0%
! AGCATTGGAATGCTCATCAA+TGG + chr3_3:84088600-84088619 None:intergenic 40.0%
TACATGAGAGCTGTAAGCAT+TGG + chr3_3:84088615-84088634 None:intergenic 40.0%
CGAGACTAAGAGATAACTCT+TGG + chr3_3:84088658-84088677 None:intergenic 40.0%
ATTCATCAGCGATACGAAAC+CGG + chr3_3:84088738-84088757 None:intergenic 40.0%
GAATTCTTGTCGTCTTCCAA+AGG - chr3_3:84088754-84088773 Msa0479220:CDS 40.0%
!! ATTGAAAAGTGCCGAATGCA+TGG - chr3_3:84088802-84088821 Msa0479220:intron 40.0%
AGACATGCTTTCCATGCATT+CGG + chr3_3:84088816-84088835 None:intergenic 40.0%
GGTAATGTCATGAAATCCTC+CGG + chr3_3:84088840-84088859 None:intergenic 40.0%
AAAAACCTTGTGAATCCTGC+AGG + chr3_3:84088904-84088923 None:intergenic 40.0%
GTTAATGTCCGAAAGCAACA+TGG - chr3_3:84088983-84089002 Msa0479220:intron 40.0%
GTCTATGCAAATAACTTCGG+GGG - chr3_3:84089081-84089100 Msa0479220:intron 40.0%
TCTATGCAAATAACTTCGGG+GGG - chr3_3:84089082-84089101 Msa0479220:intron 40.0%
GGATATCTCACAAGAAGGAT+TGG + chr3_3:84089125-84089144 None:intergenic 40.0%
AGCCGAAAGACAGAATTTGT+TGG - chr3_3:84089147-84089166 Msa0479220:CDS 40.0%
! GACAAAGCTTTTGTCCATGT+TGG - chr3_3:84089177-84089196 Msa0479220:CDS 40.0%
TATGGTTACCTCATCCAACA+TGG + chr3_3:84089194-84089213 None:intergenic 40.0%
! GCATTGCATCCTTCCTTTTA+TGG - chr3_3:84089221-84089240 Msa0479220:CDS 40.0%
GTTGGTTATTATGACAGCGA+TGG - chr3_3:84089408-84089427 Msa0479220:CDS 40.0%
CCTACAACCAGTACAAAGAA+AGG + chr3_3:84089459-84089478 None:intergenic 40.0%
!! CCTTTCTTTGTACTGGTTGT+AGG - chr3_3:84089456-84089475 Msa0479220:CDS 40.0%
!! TCTTTGTACTGGTTGTAGGT+AGG - chr3_3:84089460-84089479 Msa0479220:CDS 40.0%
ACACCACAATTTGCATTCGA+TGG + chr3_3:84089507-84089526 None:intergenic 40.0%
!! GCAAATTGTGGTGTCATCTT+TGG - chr3_3:84089513-84089532 Msa0479220:CDS 40.0%
CGCAATGCAAGTGTAGTATA+TGG + chr3_3:84089568-84089587 None:intergenic 40.0%
CAAGTGATTCAAAGGAACCT+TGG - chr3_3:84089640-84089659 Msa0479220:CDS 40.0%
AGTGATTCAAAGGAACCTTG+GGG - chr3_3:84089642-84089661 Msa0479220:CDS 40.0%
!! TTCAGCATCTTGGTGTTATG+CGG - chr3_3:84089725-84089744 Msa0479220:CDS 40.0%
CTGTTTCAATACTTCGTGCT+TGG - chr3_3:84089785-84089804 Msa0479220:CDS 40.0%
ATAATGCTAGCTAGGCAAAC+TGG - chr3_3:84090021-84090040 Msa0479220:five_prime_UTR 40.0%
!! AACTGGTTTGACAAGGAATC+AGG - chr3_3:84090038-84090057 Msa0479220:intron 40.0%
TCAGGTACAGTTACCAATTG+TGG - chr3_3:84090131-84090150 Msa0479220:intron 40.0%
TATGGTATCAGGTGGCAAAT+TGG - chr3_3:84090176-84090195 Msa0479220:intron 40.0%
! TCTTTGGAAACCAATGGTTG+AGG - chr3_3:84090219-84090238 Msa0479220:intron 40.0%
TACATGTTGTCTAGTGGAAG+AGG + chr3_3:84090407-84090426 None:intergenic 40.0%
GAAAATTGCATGGCAACCAA+AGG - chr3_3:84090455-84090474 Msa0479220:intron 40.0%
GTTGGGTAACTTTACAACTG+TGG - chr3_3:84090543-84090562 Msa0479220:intron 40.0%
GGTAACTTTACAACTGTGGA+TGG - chr3_3:84090547-84090566 Msa0479220:intron 40.0%
AACTTTACAACTGTGGATGG+TGG - chr3_3:84090550-84090569 Msa0479220:intron 40.0%
ATGCAAGAGAGACATTGTGA+TGG + chr3_3:84090579-84090598 None:intergenic 40.0%
TCACAATGTCTCTCTTGCAT+TGG - chr3_3:84090579-84090598 Msa0479220:intron 40.0%
TTGAGAAACTGTGAAAGCGA+TGG - chr3_3:84090604-84090623 Msa0479220:intron 40.0%
ATGAATGGCATCATCAGATG+TGG + chr3_3:84090635-84090654 None:intergenic 40.0%
GGAAAGCAACAACACATGTT+TGG - chr3_3:84090736-84090755 Msa0479220:intron 40.0%
CCGTTCTTCCAATGATAAGG+TGG - chr3_3:84087356-84087375 Msa0479220:three_prime_UTR 45.0%
AAGACCGACCACCTTATCAT+TGG + chr3_3:84087367-84087386 None:intergenic 45.0%
CAGAGCAAGCAGAGTTTCAA+TGG + chr3_3:84087446-84087465 None:intergenic 45.0%
CATTGAAACTCTGCTTGCTC+TGG - chr3_3:84087444-84087463 Msa0479220:three_prime_UTR 45.0%
TTGCCAAGGTCACTATGTGT+GGG - chr3_3:84087730-84087749 Msa0479220:CDS 45.0%
TTCTGCACAAGTGGAGTTGA+TGG - chr3_3:84087934-84087953 Msa0479220:CDS 45.0%
!! AATACGGTTTTTGGAGGTGG+GGG + chr3_3:84088228-84088247 None:intergenic 45.0%
TTGTGAAGAGACCAGAAGTG+AGG - chr3_3:84088381-84088400 Msa0479220:intron 45.0%
CCTGAAGAGAATGCTTGGTT+GGG + chr3_3:84088455-84088474 None:intergenic 45.0%
CCAACCAAGCATTCTCTTCA+GGG - chr3_3:84088453-84088472 Msa0479220:intron 45.0%
ATAGTCACTGTGTCGCCTAT+AGG + chr3_3:84088572-84088591 None:intergenic 45.0%
!! CGAAACCGGTGTCATTATAC+TGG + chr3_3:84088724-84088743 None:intergenic 45.0%
! TGCATGGAAAGCATGTCTTC+CGG - chr3_3:84088818-84088837 Msa0479220:intron 45.0%
! GTTGCGAAAACACTCCCTTT+TGG + chr3_3:84088861-84088880 None:intergenic 45.0%
TGTCCGAAAGCAACATGGAA+TGG - chr3_3:84088988-84089007 Msa0479220:intron 45.0%
GCTGAGGATATCTCACAAGA+AGG + chr3_3:84089130-84089149 None:intergenic 45.0%
CAAATTCTGTCTTTCGGCTG+AGG + chr3_3:84089146-84089165 None:intergenic 45.0%
! GCTTTTGTCCATGTTGGATG+AGG - chr3_3:84089183-84089202 Msa0479220:CDS 45.0%
CTGCCATCGAATGCAAATTG+TGG - chr3_3:84089501-84089520 Msa0479220:CDS 45.0%
!! TGTGGTGTCATCTTTGGACA+TGG - chr3_3:84089519-84089538 Msa0479220:CDS 45.0%
TCATCTTTGGACATGGTTGC+TGG - chr3_3:84089526-84089545 Msa0479220:CDS 45.0%
CATCTTTGGACATGGTTGCT+GGG - chr3_3:84089527-84089546 Msa0479220:CDS 45.0%
ATCTTTGGACATGGTTGCTG+GGG - chr3_3:84089528-84089547 Msa0479220:CDS 45.0%
GTATTCCTTCTTGTTCCCCA+AGG + chr3_3:84089660-84089679 None:intergenic 45.0%
AAGAAGGAATACCTCGTCTC+CGG - chr3_3:84089668-84089687 Msa0479220:CDS 45.0%
! CCTTTTGTTGCCTAAGCTGT+TGG + chr3_3:84089702-84089721 None:intergenic 45.0%
CCAACAGCTTAGGCAACAAA+AGG - chr3_3:84089699-84089718 Msa0479220:CDS 45.0%
!! CAAAAGGCACTTCAGCATCT+TGG - chr3_3:84089715-84089734 Msa0479220:CDS 45.0%
!! CTAGGCAAACTGGTTTGACA+AGG - chr3_3:84090031-84090050 Msa0479220:intron 45.0%
TTAATGCACGTGTGCGTCTT+TGG - chr3_3:84090203-84090222 Msa0479220:intron 45.0%
! TGTGCGTCTTTGGAAACCAA+TGG - chr3_3:84090213-84090232 Msa0479220:intron 45.0%
! TTTACAACTGTGGATGGTGG+TGG - chr3_3:84090553-84090572 Msa0479220:intron 45.0%
!! ATATAATTTATTTATATCAT+GGG + chr3_3:84088055-84088074 None:intergenic 5.0%
! TAGGAGGAAAGCGTGTGTGT+GGG + chr3_3:84087200-84087219 None:intergenic 50.0%
GTTGCCAAGGTCACTATGTG+TGG - chr3_3:84087729-84087748 Msa0479220:CDS 50.0%
TGCCAAGGTCACTATGTGTG+GGG - chr3_3:84087731-84087750 Msa0479220:CDS 50.0%
CAGGGAATCCCTGATCAATC+AGG + chr3_3:84087848-84087867 None:intergenic 50.0%
! ATCATGGGTTGTGCCCTGTT+TGG + chr3_3:84088040-84088059 None:intergenic 50.0%
GGGAACAAGAACCTCACTTC+TGG + chr3_3:84088395-84088414 None:intergenic 50.0%
CCCAACCAAGCATTCTCTTC+AGG - chr3_3:84088452-84088471 Msa0479220:intron 50.0%
CCCTGAAGAGAATGCTTGGT+TGG + chr3_3:84088456-84088475 None:intergenic 50.0%
AGGACCCTGAAGAGAATGCT+TGG + chr3_3:84088460-84088479 None:intergenic 50.0%
GTGAGGTAACAAAGGACTCG+AGG + chr3_3:84088498-84088517 None:intergenic 50.0%
GGAGGGACAGATGCATTAGA+AGG + chr3_3:84088692-84088711 None:intergenic 50.0%
! ATGGAAAGCATGTCTTCCGG+AGG - chr3_3:84088821-84088840 Msa0479220:intron 50.0%
TCTTTGGACATGGTTGCTGG+GGG - chr3_3:84089529-84089548 Msa0479220:CDS 50.0%
AGGAACCTTGGGGAACAAGA+AGG - chr3_3:84089652-84089671 Msa0479220:CDS 50.0%
TAAGCTGTTGGTCCACGTAC+CGG + chr3_3:84089690-84089709 None:intergenic 50.0%
!! TTGGTGTTATGCGGCAAGCA+TGG - chr3_3:84089734-84089753 Msa0479220:CDS 50.0%
!! TTTTCGGGAAGTCCTCTCTG+AGG + chr3_3:84089763-84089782 None:intergenic 50.0%
! GGTTGATACCAGTTACCCCA+AGG - chr3_3:84089987-84090006 Msa0479220:five_prime_UTR 50.0%
CTCTGAATCCTTGGGGTAAC+TGG + chr3_3:84089998-84090017 None:intergenic 50.0%
! GTAGGAGGAAAGCGTGTGTG+TGG + chr3_3:84087201-84087220 None:intergenic 55.0%
GTCCCCACACATAGTGACCT+TGG + chr3_3:84087736-84087755 None:intergenic 55.0%
GGCAGTGATCTGAGGAGTGA+GGG + chr3_3:84088883-84088902 None:intergenic 55.0%
AGGCAGTGATCTGAGGAGTG+AGG + chr3_3:84088884-84088903 None:intergenic 55.0%
ATCCTGCAGGCAGTGATCTG+AGG + chr3_3:84088891-84088910 None:intergenic 55.0%
CACTGCCTGCAGGATTCACA+AGG - chr3_3:84088896-84088915 Msa0479220:intron 55.0%
AATACCTCGTCTCCGGTACG+TGG - chr3_3:84089675-84089694 Msa0479220:CDS 55.0%
GGTACGTGGACCAACAGCTT+AGG - chr3_3:84089689-84089708 Msa0479220:CDS 55.0%
CAAGCATGGAGACCTCAGAG+AGG - chr3_3:84089748-84089767 Msa0479220:CDS 55.0%
CTCCTCAGATCACTGCCTGC+AGG - chr3_3:84088886-84088905 Msa0479220:intron 60.0%
TTGGACATGGTTGCTGGGGG+TGG - chr3_3:84089532-84089551 Msa0479220:CDS 60.0%
TGGTCCACGTACCGGAGACG+AGG + chr3_3:84089682-84089701 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 84087197 84091101 84087197 ID=Msa0479220;Name=Msa0479220
chr3_3 mRNA 84087197 84091101 84087197 ID=Msa0479220-mRNA-1;Parent=Msa0479220;Name=Msa0479220-mRNA-1;_AED=0.22;_eAED=0.22;_QI=461|1|1|1|0.75|0.6|5|309|592
chr3_3 exon 84087197 84088111 84087197 ID=Msa0479220-mRNA-1:exon:23864;Parent=Msa0479220-mRNA-1
chr3_3 exon 84088239 84088299 84088239 ID=Msa0479220-mRNA-1:exon:23863;Parent=Msa0479220-mRNA-1
chr3_3 exon 84088468 84088820 84088468 ID=Msa0479220-mRNA-1:exon:23862;Parent=Msa0479220-mRNA-1
chr3_3 exon 84089094 84090044 84089094 ID=Msa0479220-mRNA-1:exon:23861;Parent=Msa0479220-mRNA-1
chr3_3 exon 84090833 84091101 84090833 ID=Msa0479220-mRNA-1:exon:23860;Parent=Msa0479220-mRNA-1
chr3_3 five_prime_UTR 84090833 84091101 84090833 ID=Msa0479220-mRNA-1:five_prime_utr;Parent=Msa0479220-mRNA-1
chr3_3 five_prime_UTR 84089853 84090044 84089853 ID=Msa0479220-mRNA-1:five_prime_utr;Parent=Msa0479220-mRNA-1
chr3_3 CDS 84089094 84089852 84089094 ID=Msa0479220-mRNA-1:cds;Parent=Msa0479220-mRNA-1
chr3_3 CDS 84088468 84088820 84088468 ID=Msa0479220-mRNA-1:cds;Parent=Msa0479220-mRNA-1
chr3_3 CDS 84088239 84088299 84088239 ID=Msa0479220-mRNA-1:cds;Parent=Msa0479220-mRNA-1
chr3_3 CDS 84087506 84088111 84087506 ID=Msa0479220-mRNA-1:cds;Parent=Msa0479220-mRNA-1
chr3_3 three_prime_UTR 84087197 84087505 84087197 ID=Msa0479220-mRNA-1:three_prime_utr;Parent=Msa0479220-mRNA-1
Gene Sequence

>Msa0479220

ATGTATCCCAACCAAGCATTCTCTTCAGGGTCCTATATGGATATGTTCACCTCGAGTCCTTTGTTACCTCACAATTACTACAATGAATCTGTAGCAGAACAAAATGAAACCAAGTTTAACACACCTATAGGCGACACAGTGACTATGCAGTCCATTGATGAGCATTCCAATGCTTACAGCTCTCATGTAGATGAGCAAAATATACAATGCCAAGAGTTATCTCTTAGTCTCGGGACACTACTGCCTTCTAATGCATCTGTCCCTCCATTTCAATACCAGTATAATGACACCGGTTTCGTATCGCTGATGAATTCTTGTCGTCTTCCAAAGGGAACTACTATATCTAACGAAGATGAATTGAAAAGTGCCGAATGCATGGAAAGCATGTCTTCCGGAGGATTTCATGACATTACCAAAAGGGAGTGTTTTCGCAACCCTCACTCCTCAGATCACTGCCTGCAGGATTCACAAGGTTTTTCCAACATTTTCCTAAACTCTCAATATCTTAAGGCTACACAGGAGTTACTTGATGAGATAGTTAATGTCCGAAAGCAACATGGAATGGAAAAGCAAGAAAAAATCCGCAACATTGGATTGGATAATCCCAAAGATAGTGATGGAAAATCTACTAGTCAGTCTATGCAAATAACTTCGGGGGGACCTAATGATTCTAATTCCAATCCTTCTTGTGAGATATCCTCAGCCGAAAGACAGAATTTGTTGGATAAGAAGACAAAGCTTTTGTCCATGTTGGATGAGGTAGGCAAAAGATACAGACAGTACTGCCATCGAATGCAAATTGTGGTGTCATCTTTGGACATGGTTGCTGGGGGTGGAGCAGCAGAGCCATATACTACACTTGCATTGCGAACAGTTTCGCGTCAGTTTCGCTGCTTGCGCGATGCTATCAGCAACCAAGTTCAAGTGATTCAAAGGAACCTTGGGGAACAAGAAGGAATACCTCGTCTCCGGTACGTGGACCAACAGCTTAGGCAACAAAAGGCACTTCAGCATCTTGGTGTTATGCGGCAAGCATGGAGACCTCAGAGAGGACTTCCCGAAAACTCTGTTTCAATACTTCGTGCTTGGCTATTTGAACATTTTCTTAATCCTTACCCCAAGGATTCAGAGAAAATAATGCTAGCTAGGCAAACTGGTTTGACAAGGAATCAGGTGGCAAATTGGTTCATTAATGCACGTGTGCGTCTTTGGAAACCAATGGTTGAGGAAATATACAAAGAAGAGTTTGGTGATTCTGAAATGAACTGCAATTTTTCATCTGAAAATACACTCCAAGGTAAAAGAGATTATGGTCAAGAGATTAATAGTAATAAATTGGAAGAAGAGTCACATGACAATGTACAAATTACTTGTGATCATAGTGTACAAGCCTCTTCCACTAGACAACATGTAGAAAAAAATGTGATAGATTGTGGAAATGGAAAATTGCATGGCAACCAAAGGCTCAGCATAAAAAATGGCTTTTATTCACAAATAGATTCTGATTCTGCCACATATGATTTAACAGAGTTGGGTAACTTTACAACTGTGGATGGTGGTGGCCATCACAATGTCTCTCTTGCATTGGAGTTGAGAAACTGTGAAAGCGATGGATTAGCCACATCTGATGATGCCATTCATAAAAGACATAATAATAATAATCAGACATTGGTTTCTTCTTCACAGAGTACTGATTTACTAGACTATCATTTCACAGATTCAGGAAAGCAACAACACATGTTTGGCAATACTCATCTGTTGCATGAATTTGTCGTATGA
Protein sequence

>Msa0479220

MYPNQAFSSGSYMDMFTSSPLLPHNYYNESVAEQNETKFNTPIGDTVTMQSIDEHSNAYSSHVDEQNIQCQELSLSLGTLLPSNASVPPFQYQYNDTGFVSLMNSCRLPKGTTISNEDELKSAECMESMSSGGFHDITKRECFRNPHSSDHCLQDSQGFSNIFLNSQYLKATQELLDEIVNVRKQHGMEKQEKIRNIGLDNPKDSDGKSTSQSMQITSGGPNDSNSNPSCEISSAERQNLLDKKTKLLSMLDEVGKRYRQYCHRMQIVVSSLDMVAGGGAAEPYTTLALRTVSRQFRCLRDAISNQVQVIQRNLGEQEGIPRLRYVDQQLRQQKALQHLGVMRQAWRPQRGLPENSVSILRAWLFEHFLNPYPKDSEKIMLARQTGLTRNQVANWFINARVRLWKPMVEEIYKEEFGDSEMNCNFSSENTLQGKRDYGQEINSNKLEEESHDNVQITCDHSVQASSTRQHVEKNVIDCGNGKLHGNQRLSIKNGFYSQIDSDSATYDLTELGNFTTVDGGGHHNVSLALELRNCESDGLATSDDAIHKRHNNNNQTLVSSSQSTDLLDYHFTDSGKQQHMFGNTHLLHEFVV*