Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479410 | ACY06328.1 | 99.726 | 365 | 1 | 0 | 1 | 365 | 1 | 365 | 0.0 | 758 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479410 | sp|P28002|COMT1_MEDSA | 99.452 | 365 | 2 | 0 | 1 | 365 | 1 | 365 | 0.0 | 754 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479410 | A0A396J046 | 98.630 | 365 | 5 | 0 | 1 | 365 | 55 | 419 | 0.0 | 755 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0425900 | Msa0479410 | 0.919653 | 3.439924e-87 | -8.615850e-47 |
| Msa0426120 | Msa0479410 | 0.957772 | 1.208630e-115 | -8.615850e-47 |
| Msa0472340 | Msa0479410 | 0.834046 | 3.757657e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479410 | MtrunA17_Chr3g0128011 | 98.630 | 365 | 5 | 0 | 1 | 365 | 55 | 419 | 0.0 | 755 |
| Msa0479410 | MtrunA17_Chr5g0448091 | 67.614 | 352 | 113 | 1 | 13 | 363 | 12 | 363 | 0.0 | 518 |
| Msa0479410 | MtrunA17_Chr7g0276411 | 55.966 | 352 | 153 | 1 | 14 | 363 | 11 | 362 | 2.48e-149 | 426 |
| Msa0479410 | MtrunA17_Chr8g0367441 | 53.315 | 362 | 167 | 1 | 4 | 363 | 16 | 377 | 1.70e-145 | 416 |
| Msa0479410 | MtrunA17_Chr8g0367491 | 54.203 | 345 | 156 | 1 | 21 | 363 | 32 | 376 | 4.95e-143 | 410 |
| Msa0479410 | MtrunA17_Chr8g0367451 | 52.486 | 362 | 170 | 1 | 4 | 363 | 15 | 376 | 9.45e-139 | 399 |
| Msa0479410 | MtrunA17_Chr7g0276401 | 52.586 | 348 | 164 | 1 | 16 | 363 | 29 | 375 | 1.71e-133 | 386 |
| Msa0479410 | MtrunA17_Chr8g0367501 | 50.847 | 354 | 170 | 2 | 14 | 363 | 12 | 365 | 3.23e-128 | 374 |
| Msa0479410 | MtrunA17_Chr8g0367381 | 51.360 | 331 | 140 | 2 | 4 | 332 | 16 | 327 | 9.66e-124 | 359 |
| Msa0479410 | MtrunA17_Chr1g0200491 | 48.901 | 364 | 179 | 6 | 6 | 363 | 10 | 372 | 1.06e-119 | 350 |
| Msa0479410 | MtrunA17_Chr7g0218131 | 46.439 | 351 | 184 | 4 | 16 | 363 | 21 | 370 | 3.77e-111 | 329 |
| Msa0479410 | MtrunA17_Chr7g0218261 | 46.857 | 350 | 183 | 3 | 16 | 363 | 20 | 368 | 1.93e-109 | 324 |
| Msa0479410 | MtrunA17_Chr7g0218181 | 47.727 | 352 | 175 | 6 | 16 | 363 | 21 | 367 | 4.36e-109 | 323 |
| Msa0479410 | MtrunA17_Chr8g0345851 | 53.957 | 278 | 126 | 1 | 88 | 363 | 13 | 290 | 4.93e-108 | 318 |
| Msa0479410 | MtrunA17_Chr7g0218211 | 45.179 | 363 | 193 | 5 | 6 | 363 | 8 | 369 | 3.09e-107 | 319 |
| Msa0479410 | MtrunA17_Chr1g0163601 | 44.350 | 354 | 188 | 5 | 17 | 363 | 19 | 370 | 4.11e-105 | 313 |
| Msa0479410 | MtrunA17_Chr2g0307521 | 44.444 | 351 | 190 | 5 | 16 | 363 | 15 | 363 | 4.17e-105 | 313 |
| Msa0479410 | MtrunA17_Chr1g0163611 | 42.742 | 372 | 202 | 6 | 1 | 363 | 1 | 370 | 2.87e-104 | 311 |
| Msa0479410 | MtrunA17_Chr3g0085201 | 46.875 | 352 | 180 | 6 | 16 | 363 | 9 | 357 | 1.30e-103 | 309 |
| Msa0479410 | MtrunA17_Chr3g0085211 | 46.479 | 355 | 181 | 7 | 14 | 363 | 20 | 370 | 1.51e-102 | 307 |
| Msa0479410 | MtrunA17_Chr1g0163621 | 41.398 | 372 | 206 | 7 | 1 | 363 | 16 | 384 | 7.62e-102 | 305 |
| Msa0479410 | MtrunA17_Chr7g0218301 | 45.938 | 357 | 182 | 7 | 16 | 363 | 21 | 375 | 9.65e-102 | 305 |
| Msa0479410 | MtrunA17_Chr7g0218271 | 45.378 | 357 | 184 | 7 | 16 | 363 | 21 | 375 | 3.59e-101 | 303 |
| Msa0479410 | MtrunA17_Chr2g0314271 | 39.548 | 354 | 202 | 8 | 15 | 363 | 8 | 354 | 2.00e-77 | 242 |
| Msa0479410 | MtrunA17_Chr6g0482291 | 56.522 | 184 | 72 | 1 | 180 | 363 | 1 | 176 | 8.09e-73 | 224 |
| Msa0479410 | MtrunA17_Chr4g0022021 | 39.039 | 333 | 187 | 11 | 36 | 361 | 44 | 367 | 3.67e-72 | 229 |
| Msa0479410 | MtrunA17_Chr3g0130061 | 38.983 | 354 | 205 | 9 | 15 | 363 | 11 | 358 | 2.35e-70 | 224 |
| Msa0479410 | MtrunA17_Chr3g0130011 | 37.322 | 351 | 209 | 8 | 18 | 363 | 14 | 358 | 3.38e-70 | 223 |
| Msa0479410 | MtrunA17_Chr4g0021981 | 36.677 | 319 | 189 | 9 | 36 | 349 | 44 | 354 | 5.02e-68 | 218 |
| Msa0479410 | MtrunA17_Chr3g0121301 | 37.273 | 330 | 192 | 10 | 35 | 359 | 39 | 358 | 1.16e-62 | 204 |
| Msa0479410 | MtrunA17_Chr1g0188391 | 34.568 | 324 | 197 | 8 | 34 | 349 | 31 | 347 | 1.17e-53 | 181 |
| Msa0479410 | MtrunA17_Chr5g0432301 | 31.988 | 322 | 206 | 9 | 34 | 349 | 32 | 346 | 2.23e-49 | 169 |
| Msa0479410 | MtrunA17_Chr7g0219161 | 32.000 | 325 | 210 | 6 | 29 | 349 | 26 | 343 | 1.83e-48 | 167 |
| Msa0479410 | MtrunA17_Chr1g0188371 | 32.344 | 337 | 211 | 9 | 29 | 358 | 26 | 352 | 2.78e-48 | 167 |
| Msa0479410 | MtrunA17_Chr5g0432251 | 32.298 | 322 | 205 | 9 | 34 | 349 | 31 | 345 | 6.32e-48 | 166 |
| Msa0479410 | MtrunA17_Chr5g0432241 | 31.366 | 322 | 208 | 8 | 34 | 349 | 32 | 346 | 4.74e-47 | 163 |
| Msa0479410 | MtrunA17_Chr7g0223241 | 30.790 | 367 | 224 | 11 | 1 | 358 | 1 | 346 | 1.33e-45 | 159 |
| Msa0479410 | MtrunA17_Chr4g0040621 | 31.940 | 335 | 211 | 10 | 34 | 361 | 44 | 368 | 3.47e-45 | 159 |
| Msa0479410 | MtrunA17_Chr7g0219141 | 30.904 | 343 | 224 | 7 | 11 | 349 | 10 | 343 | 6.13e-45 | 158 |
| Msa0479410 | MtrunA17_Chr8g0367401 | 63.303 | 109 | 40 | 0 | 157 | 265 | 2 | 110 | 3.49e-44 | 149 |
| Msa0479410 | MtrunA17_Chr8g0367461 | 55.357 | 112 | 50 | 0 | 252 | 363 | 1 | 112 | 4.47e-44 | 148 |
| Msa0479410 | MtrunA17_Chr5g0432211 | 30.435 | 322 | 197 | 8 | 34 | 349 | 31 | 331 | 2.32e-42 | 150 |
| Msa0479410 | MtrunA17_Chr7g0223231 | 30.000 | 320 | 209 | 7 | 33 | 349 | 29 | 336 | 8.11e-42 | 149 |
| Msa0479410 | MtrunA17_Chr4g0046361 | 32.861 | 353 | 203 | 11 | 17 | 349 | 9 | 347 | 1.97e-41 | 149 |
| Msa0479410 | MtrunA17_Chr4g0046531 | 28.986 | 345 | 227 | 9 | 11 | 349 | 10 | 342 | 3.62e-39 | 147 |
| Msa0479410 | MtrunA17_Chr4g0046531 | 29.565 | 345 | 225 | 9 | 11 | 349 | 372 | 704 | 1.19e-38 | 146 |
| Msa0479410 | MtrunA17_Chr8g0367391 | 51.887 | 106 | 51 | 0 | 258 | 363 | 29 | 134 | 1.09e-38 | 134 |
| Msa0479410 | MtrunA17_Chr5g0432261 | 41.935 | 155 | 86 | 2 | 198 | 349 | 160 | 313 | 1.11e-35 | 132 |
| Msa0479410 | MtrunA17_Chr8g0367481 | 44.604 | 139 | 75 | 1 | 4 | 140 | 16 | 154 | 5.28e-33 | 120 |
| Msa0479410 | MtrunA17_Chr4g0014641 | 31.790 | 324 | 208 | 8 | 34 | 349 | 31 | 349 | 8.16e-33 | 125 |
| Msa0479410 | MtrunA17_Chr4g0046341 | 32.394 | 355 | 205 | 11 | 17 | 349 | 9 | 350 | 3.83e-32 | 124 |
| Msa0479410 | MtrunA17_Chr4g0014661 | 32.203 | 354 | 200 | 12 | 17 | 349 | 9 | 343 | 5.88e-32 | 123 |
| Msa0479410 | MtrunA17_Chr4g0014561 | 30.925 | 346 | 221 | 9 | 17 | 349 | 9 | 349 | 6.87e-32 | 123 |
| Msa0479410 | MtrunA17_Chr4g0014681 | 30.925 | 346 | 221 | 9 | 17 | 349 | 9 | 349 | 1.12e-31 | 122 |
| Msa0479410 | MtrunA17_Chr4g0014591 | 31.921 | 354 | 201 | 12 | 17 | 349 | 9 | 343 | 2.78e-29 | 115 |
| Msa0479410 | MtrunA17_Chr8g0367421 | 49.541 | 109 | 38 | 1 | 157 | 265 | 2 | 93 | 1.77e-28 | 107 |
| Msa0479410 | MtrunA17_Chr1g0170941 | 59.211 | 76 | 31 | 0 | 188 | 263 | 1 | 76 | 2.60e-28 | 105 |
| Msa0479410 | MtrunA17_Chr8g0367411 | 44.186 | 129 | 70 | 1 | 14 | 140 | 5 | 133 | 3.78e-28 | 107 |
| Msa0479410 | MtrunA17_Chr7g0219171 | 40.000 | 120 | 67 | 2 | 233 | 349 | 117 | 234 | 6.23e-23 | 96.3 |
| Msa0479410 | MtrunA17_Chr8g0367471 | 55.263 | 76 | 34 | 0 | 180 | 255 | 1 | 76 | 2.79e-22 | 90.1 |
| Msa0479410 | MtrunA17_Chr6g0482281 | 42.636 | 129 | 70 | 2 | 16 | 140 | 32 | 160 | 6.08e-22 | 92.0 |
| Msa0479410 | MtrunA17_Chr1g0170931 | 36.000 | 125 | 71 | 2 | 21 | 142 | 6 | 124 | 3.17e-20 | 85.5 |
| Msa0479410 | MtrunA17_Chr4g0014601 | 30.112 | 269 | 153 | 10 | 17 | 268 | 9 | 259 | 2.71e-19 | 86.7 |
| Msa0479410 | MtrunA17_Chr4g0011691 | 44.330 | 97 | 51 | 3 | 267 | 361 | 140 | 235 | 1.53e-17 | 80.9 |
| Msa0479410 | MtrunA17_Chr1g0170951 | 46.667 | 75 | 37 | 2 | 274 | 347 | 17 | 89 | 3.13e-14 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0479410 | AT5G54160.1 | 76.712 | 365 | 83 | 1 | 1 | 365 | 1 | 363 | 0.0 | 598 |
| Msa0479410 | AT1G51990.2 | 47.143 | 350 | 182 | 3 | 15 | 361 | 11 | 360 | 9.98e-116 | 340 |
| Msa0479410 | AT1G51990.1 | 47.143 | 350 | 182 | 3 | 15 | 361 | 11 | 360 | 2.09e-115 | 340 |
| Msa0479410 | AT1G77520.1 | 45.961 | 359 | 186 | 4 | 13 | 363 | 23 | 381 | 9.94e-115 | 338 |
| Msa0479410 | AT1G33030.1 | 46.154 | 351 | 183 | 5 | 17 | 363 | 2 | 350 | 1.29e-111 | 330 |
| Msa0479410 | AT1G77530.1 | 45.676 | 370 | 189 | 5 | 2 | 363 | 16 | 381 | 1.86e-105 | 315 |
| Msa0479410 | AT1G63140.2 | 45.810 | 358 | 182 | 5 | 16 | 363 | 26 | 381 | 1.75e-100 | 302 |
| Msa0479410 | AT1G63140.4 | 45.810 | 358 | 182 | 5 | 16 | 363 | 46 | 401 | 2.10e-100 | 303 |
| Msa0479410 | AT1G21100.1 | 46.006 | 363 | 183 | 8 | 10 | 363 | 15 | 373 | 9.18e-99 | 298 |
| Msa0479410 | AT1G21130.1 | 45.455 | 363 | 185 | 8 | 10 | 363 | 15 | 373 | 2.44e-98 | 296 |
| Msa0479410 | AT5G53810.1 | 45.294 | 340 | 177 | 5 | 33 | 363 | 39 | 378 | 1.08e-97 | 295 |
| Msa0479410 | AT1G21110.1 | 44.904 | 363 | 187 | 8 | 10 | 363 | 15 | 373 | 2.10e-96 | 291 |
| Msa0479410 | AT1G21120.1 | 45.179 | 363 | 186 | 8 | 10 | 363 | 15 | 373 | 2.64e-96 | 291 |
| Msa0479410 | AT1G21120.2 | 45.179 | 363 | 186 | 8 | 10 | 363 | 63 | 421 | 1.59e-95 | 291 |
| Msa0479410 | AT1G76790.1 | 40.921 | 369 | 198 | 8 | 9 | 364 | 5 | 366 | 1.73e-86 | 266 |
| Msa0479410 | AT3G53140.1 | 38.483 | 356 | 208 | 5 | 15 | 363 | 8 | 359 | 9.85e-76 | 238 |
| Msa0479410 | AT1G33030.3 | 46.875 | 256 | 130 | 5 | 17 | 268 | 2 | 255 | 5.24e-75 | 233 |
| Msa0479410 | AT1G33030.2 | 47.036 | 253 | 128 | 5 | 17 | 265 | 2 | 252 | 1.92e-74 | 231 |
| Msa0479410 | AT5G37170.1 | 40.764 | 314 | 156 | 6 | 54 | 363 | 47 | 334 | 2.68e-72 | 228 |
| Msa0479410 | AT1G63140.1 | 47.104 | 259 | 126 | 4 | 16 | 265 | 46 | 302 | 7.14e-67 | 214 |
| Msa0479410 | AT1G21130.2 | 46.591 | 264 | 129 | 7 | 10 | 265 | 15 | 274 | 7.91e-65 | 208 |
| Msa0479410 | AT1G62900.1 | 50.244 | 205 | 101 | 1 | 160 | 363 | 1 | 205 | 2.10e-64 | 204 |
| Msa0479410 | AT5G37170.2 | 42.797 | 236 | 131 | 3 | 130 | 363 | 1 | 234 | 2.10e-62 | 199 |
| Msa0479410 | AT1G77530.2 | 44.841 | 252 | 128 | 4 | 2 | 246 | 16 | 263 | 2.21e-58 | 191 |
| Msa0479410 | AT5G37170.3 | 48.387 | 186 | 94 | 2 | 180 | 363 | 1 | 186 | 9.33e-58 | 186 |
| Msa0479410 | AT1G63140.3 | 44.167 | 240 | 123 | 4 | 16 | 246 | 46 | 283 | 1.19e-53 | 179 |
| Msa0479410 | AT4G35160.1 | 33.232 | 328 | 199 | 10 | 37 | 350 | 47 | 368 | 1.51e-46 | 163 |
| Msa0479410 | AT4G35150.1 | 38.835 | 206 | 117 | 3 | 154 | 350 | 106 | 311 | 4.37e-45 | 157 |
Find 96 sgRNAs with CRISPR-Local
Find 347 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAAAATATCCCACTATTA+AGG | 0.186659 | 3_3:+84400629 | Msa0479410:CDS |
| GGAAAGATTCAGAGACTTTA+TGG | 0.189226 | 3_3:+84396121 | Msa0479410:CDS |
| TAGTGGTAATTTGAAGAATA+TGG | 0.197261 | 3_3:-84395770 | None:intergenic |
| TTAAGAAGGTTTAAGTTCTT+TGG | 0.249397 | 3_3:+84401681 | Msa0479410:exon |
| CTACATCAACAAGAGATTTA+AGG | 0.256085 | 3_3:-84400572 | None:intergenic |
| GGCTACTGTTGCTAAGTATT+TGG | 0.264695 | 3_3:+84396147 | Msa0479410:CDS |
| ATTCCATTCAACAAGGCTTA+TGG | 0.296668 | 3_3:+84400426 | Msa0479410:CDS |
| TTTGTGGCCAGGCTTGAATC+TGG | 0.323494 | 3_3:-84401506 | None:intergenic |
| TGCTCTTAATCTCATGAATC+AGG | 0.330556 | 3_3:+84396198 | Msa0479410:CDS |
| GAAACAATGTTCATTTATAT+AGG | 0.353608 | 3_3:-84401836 | None:intergenic |
| GGACCGAATGTTGCGTCTCT+TGG | 0.369354 | 3_3:+84396054 | Msa0479410:CDS |
| ACCTTGGAATCCAGCACCTT+TGG | 0.375898 | 3_3:-84401612 | None:intergenic |
| GTGCATCAGGGTTAGTTGTT+GGG | 0.376092 | 3_3:-84396021 | None:intergenic |
| ATGTGATTTCTACTTCTATT+CGG | 0.382531 | 3_3:+84401776 | Msa0479410:three_prime_UTR |
| AACATTCGGTCCAACATAAC+TGG | 0.384062 | 3_3:-84396043 | None:intergenic |
| CATGAGATTAAGAGCAGAAA+TGG | 0.384733 | 3_3:-84396191 | None:intergenic |
| TTGCTTCTTCATCTGATATG+TGG | 0.386592 | 3_3:-84395859 | None:intergenic |
| AAAATTAATACCCTTAATAG+TGG | 0.390711 | 3_3:-84400640 | None:intergenic |
| TCAAAATATCCCACTATTAA+GGG | 0.393613 | 3_3:+84400630 | Msa0479410:CDS |
| TCCAACATAACTGGTGCATC+AGG | 0.396412 | 3_3:-84396034 | None:intergenic |
| TACAATGGACTTTGAAACCT+TGG | 0.398695 | 3_3:-84401628 | None:intergenic |
| TGCTTCTTCATCTGATATGT+GGG | 0.407456 | 3_3:-84395858 | None:intergenic |
| GAGGATCTTGCCAAAGGTGC+TGG | 0.410291 | 3_3:+84401602 | Msa0479410:CDS |
| CATCATGGAGTTTCTTAAGA+AGG | 0.412081 | 3_3:+84401667 | Msa0479410:CDS |
| ATCACAACCATGGGTTCAAC+AGG | 0.413894 | 3_3:+84395815 | Msa0479410:exon |
| TTGAAAACCTTGTTAAACCT+TGG | 0.414420 | 3_3:-84400480 | None:intergenic |
| ATGAACATTGTTTCATATTG+TGG | 0.416439 | 3_3:+84401845 | Msa0479410:three_prime_UTR |
| ATTCCATAAGCCTTGTTGAA+TGG | 0.429746 | 3_3:-84400429 | None:intergenic |
| CTAAAAGATGCAGTCCTTGA+TGG | 0.430133 | 3_3:+84400399 | Msa0479410:CDS |
| AGTGGTAATTTGAAGAATAT+GGG | 0.437545 | 3_3:-84395769 | None:intergenic |
| TTAGAAATCATTGCTAAAGC+TGG | 0.441186 | 3_3:+84395956 | Msa0479410:CDS |
| GTTGATGTAGGTGGTGGTAC+TGG | 0.442964 | 3_3:+84400585 | Msa0479410:CDS |
| GATTCAGAGACTTTATGGTT+TGG | 0.453695 | 3_3:+84396126 | Msa0479410:CDS |
| CTTAAATCTCTTGTTGATGT+AGG | 0.455712 | 3_3:+84400573 | Msa0479410:CDS |
| GGTGCATCAGGGTTAGTTGT+TGG | 0.460545 | 3_3:-84396022 | None:intergenic |
| TGTGTTCTCTCTTTCCCACC+TGG | 0.462038 | 3_3:-84401569 | None:intergenic |
| TGTGTAGGAGTTGAGCATGT+TGG | 0.469251 | 3_3:+84400817 | Msa0479410:intron |
| GCCAAAGGTGCTGGATTCCA+AGG | 0.489804 | 3_3:+84401611 | Msa0479410:CDS |
| AGGCTTGAATCTGGAGCCAC+CGG | 0.492120 | 3_3:-84401497 | None:intergenic |
| CCCTGATGCACCAGTTATGT+TGG | 0.494375 | 3_3:+84396033 | Msa0479410:CDS |
| GATTCAAGCCTGGCCACAAA+AGG | 0.496107 | 3_3:+84401509 | Msa0479410:CDS |
| TCTTCATCTGATATGTGGGT+TGG | 0.496254 | 3_3:-84395854 | None:intergenic |
| ATGATGATTAATTAAAGAGC+TGG | 0.496913 | 3_3:-84401896 | None:intergenic |
| TAAAAGATGCAGTCCTTGAT+GGG | 0.498813 | 3_3:+84400400 | Msa0479410:CDS |
| AGCTGAGAAGCAATTTCAAT+AGG | 0.505580 | 3_3:-84395998 | None:intergenic |
| TGTGGCAGAATGCATACTTC+CGG | 0.512468 | 3_3:+84401478 | Msa0479410:CDS |
| TATTTGGTTAAGAATGAAGA+TGG | 0.526519 | 3_3:+84396163 | Msa0479410:CDS |
| AAGGCCTTCAAAACCTGTGT+AGG | 0.530395 | 3_3:-84400553 | None:intergenic |
| TATAGTGGATTTGTCATGAC+TGG | 0.531063 | 3_3:+84401387 | Msa0479410:intron |
| ATAAAGTGCTCATGGAAAGC+TGG | 0.532718 | 3_3:+84396221 | Msa0479410:CDS |
| TCAGTTCGTACTCAACAAGA+TGG | 0.533052 | 3_3:+84396100 | Msa0479410:CDS |
| GAATCAGGATAAAGTGCTCA+TGG | 0.535381 | 3_3:+84396213 | Msa0479410:CDS |
| TAAACCTTGGATCTGTTCCA+TGG | 0.535558 | 3_3:-84400467 | None:intergenic |
| AAATCTCTTGTTGATGTAGG+TGG | 0.536337 | 3_3:+84400576 | Msa0479410:CDS |
| ACCTCATCAATCACAACCAT+GGG | 0.539236 | 3_3:+84395806 | Msa0479410:exon |
| AAGCCAAGAGACGCAACATT+CGG | 0.541027 | 3_3:-84396057 | None:intergenic |
| TGCTTTCAACACATACATCA+TGG | 0.542854 | 3_3:+84401652 | Msa0479410:CDS |
| AGTTTCACCTGTTGAACCCA+TGG | 0.544126 | 3_3:-84395822 | None:intergenic |
| ATCTGTTCCATGGTATTCAA+AGG | 0.546956 | 3_3:-84400457 | None:intergenic |
| GAAGATGCTCCATCTTATCC+AGG | 0.550163 | 3_3:+84400681 | Msa0479410:CDS |
| GTAGGAGTTGAGCATGTTGG+TGG | 0.550218 | 3_3:+84400820 | Msa0479410:intron |
| CAATCCACTTTGCATCATTG+AGG | 0.550885 | 3_3:+84395719 | Msa0479410:five_prime_UTR |
| ATAGGTGAAATTTGAGCACC+AGG | 0.562722 | 3_3:-84395980 | None:intergenic |
| GATTTCTACTTCTATTCGGT+AGG | 0.565985 | 3_3:+84401780 | Msa0479410:three_prime_UTR |
| AAATTAATACCCTTAATAGT+GGG | 0.568328 | 3_3:-84400639 | None:intergenic |
| CATGTTTGTCAGTATTCCAA+AGG | 0.570278 | 3_3:+84400846 | Msa0479410:CDS |
| ATCATGTTGGCTCATAATCC+AGG | 0.578789 | 3_3:+84401551 | Msa0479410:CDS |
| GGTGGCTCCAGATTCAAGCC+TGG | 0.579041 | 3_3:+84401499 | Msa0479410:CDS |
| TTGCTAATTGCATGGCGAAG+AGG | 0.583273 | 3_3:-84395883 | None:intergenic |
| ATGGAGCATCTTCAATGACA+TGG | 0.583754 | 3_3:-84400671 | None:intergenic |
| TGGAGCATCTTCAATGACAT+GGG | 0.584396 | 3_3:-84400670 | None:intergenic |
| AACAGATCCAAGGTTTAACA+AGG | 0.588192 | 3_3:+84400473 | Msa0479410:CDS |
| AATACCATGGAACAGATCCA+AGG | 0.589150 | 3_3:+84400463 | Msa0479410:CDS |
| AAAATTCTTGAGACCTACAC+AGG | 0.594762 | 3_3:+84400540 | Msa0479410:CDS |
| AACCTCATCAATCACAACCA+TGG | 0.599447 | 3_3:+84395805 | Msa0479410:exon |
| ATCATTGCTAAAGCTGGACC+TGG | 0.610122 | 3_3:+84395962 | Msa0479410:CDS |
| TCACATTGATGTGATCATGT+TGG | 0.610394 | 3_3:+84401538 | Msa0479410:CDS |
| CCAACATAACTGGTGCATCA+GGG | 0.610855 | 3_3:-84396033 | None:intergenic |
| AAAAGATGCAGTCCTTGATG+GGG | 0.614980 | 3_3:+84400401 | Msa0479410:CDS |
| GAGTTTGAGGATCTTGCCAA+AGG | 0.616335 | 3_3:+84401596 | Msa0479410:CDS |
| ATGACAGCCTTTGAATACCA+TGG | 0.623586 | 3_3:+84400450 | Msa0479410:CDS |
| TGAAGCACTTGCTAATTGCA+TGG | 0.625126 | 3_3:-84395891 | None:intergenic |
| AGACAATGGAAAAGTGATTG+TGG | 0.626581 | 3_3:+84401460 | Msa0479410:CDS |
| TCTCTTGTTGATGTAGGTGG+TGG | 0.632846 | 3_3:+84400579 | Msa0479410:CDS |
| GTGACCTCAATGATGCAAAG+TGG | 0.647973 | 3_3:-84395723 | None:intergenic |
| AAGCCTGGCCACAAAAGGTG+TGG | 0.656446 | 3_3:+84401514 | Msa0479410:CDS |
| GGCAGAATGCATACTTCCGG+TGG | 0.659629 | 3_3:+84401481 | Msa0479410:CDS |
| TGAAGAATATGGGATAACGA+AGG | 0.665114 | 3_3:-84395759 | None:intergenic |
| ACCCATGGTTGTGATTGATG+AGG | 0.666181 | 3_3:-84395807 | None:intergenic |
| GAGTACGAACTGAACAAGTG+AGG | 0.669605 | 3_3:-84396090 | None:intergenic |
| ATGTGTTGAAAGCATTACAA+TGG | 0.671130 | 3_3:-84401643 | None:intergenic |
| ATGTTGGCTCATAATCCAGG+TGG | 0.673281 | 3_3:+84401554 | Msa0479410:CDS |
| TGTTGGCTCATAATCCAGGT+GGG | 0.675248 | 3_3:+84401555 | Msa0479410:CDS |
| AAAGATGCAGTCCTTGATGG+GGG | 0.691221 | 3_3:+84400402 | Msa0479410:CDS |
| TATGAGGCACTACCAGACAA+TGG | 0.700556 | 3_3:+84401446 | Msa0479410:CDS |
| GGAGCATCTTCAATGACATG+GGG | 0.708903 | 3_3:-84400669 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTTTTTTTTTTTA+CGG | - | chr3_3:84397616-84397635 | None:intergenic | 0.0% |
| !! | TATATATATATATATATATA+TGG | + | chr3_3:84397939-84397958 | Msa0479410:intron | 0.0% |
| !! | ATATATATATATATATATAT+GGG | + | chr3_3:84397940-84397959 | Msa0479410:intron | 0.0% |
| !! | TATATATATATATATATATA+GGG | - | chr3_3:84397939-84397958 | None:intergenic | 0.0% |
| !! | ATATATATATATATATATAT+AGG | - | chr3_3:84397940-84397959 | None:intergenic | 0.0% |
| !! | AACATATAGATATAATTAAT+GGG | + | chr3_3:84396322-84396341 | Msa0479410:intron | 10.0% |
| !!! | ATTTTTAACATTAATTATAG+GGG | - | chr3_3:84396723-84396742 | None:intergenic | 10.0% |
| !!! | GATTTTTAACATTAATTATA+GGG | - | chr3_3:84396724-84396743 | None:intergenic | 10.0% |
| !!! | AGATTTTTAACATTAATTAT+AGG | - | chr3_3:84396725-84396744 | None:intergenic | 10.0% |
| !!! | TAATGTTAAAAATCTAAAAT+TGG | + | chr3_3:84396730-84396749 | Msa0479410:intron | 10.0% |
| !! | AAAATTAAAACATAAAAACT+TGG | + | chr3_3:84397377-84397396 | Msa0479410:intron | 10.0% |
| !!! | TGTTTATTTAGTTAATTTTA+TGG | + | chr3_3:84398737-84398756 | Msa0479410:intron | 10.0% |
| !!! | CATATAGTATTAATTAATTT+TGG | + | chr3_3:84399214-84399233 | Msa0479410:intron | 10.0% |
| !!! | ACATATTTTTTTAACTTTTT+TGG | - | chr3_3:84399313-84399332 | None:intergenic | 10.0% |
| !!! | ATAGAATACATTTTTTAATA+TGG | + | chr3_3:84399764-84399783 | Msa0479410:intron | 10.0% |
| !!! | ATAATGATATTATTTTTTTG+AGG | - | chr3_3:84399930-84399949 | None:intergenic | 10.0% |
| !! | TGAAATAAATAATATATGTT+TGG | + | chr3_3:84400077-84400096 | Msa0479410:intron | 10.0% |
| !! | CAACATATAGATATAATTAA+TGG | + | chr3_3:84396321-84396340 | Msa0479410:intron | 15.0% |
| !! | ACATATAGATATAATTAATG+GGG | + | chr3_3:84396323-84396342 | Msa0479410:intron | 15.0% |
| !! | ACAATAACTCTATTTATATA+GGG | + | chr3_3:84396484-84396503 | Msa0479410:intron | 15.0% |
| !!! | AACGAAATATTTTAATATCA+AGG | + | chr3_3:84396588-84396607 | Msa0479410:intron | 15.0% |
| !!! | TTTTTAACATTAATTATAGG+GGG | - | chr3_3:84396722-84396741 | None:intergenic | 15.0% |
| !!! | TGTCTTAAAAGTTTTTTTTT+TGG | - | chr3_3:84397141-84397160 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTGCTTACAATTT+AGG | - | chr3_3:84397336-84397355 | None:intergenic | 15.0% |
| !!! | CTTTCTACTTATTTTTTTTA+AGG | - | chr3_3:84397497-84397516 | None:intergenic | 15.0% |
| !! | AAAGTAACAAAATAAACATT+AGG | + | chr3_3:84397513-84397532 | Msa0479410:intron | 15.0% |
| !! | TCATATATATCTTGTAAAAT+AGG | + | chr3_3:84397571-84397590 | Msa0479410:intron | 15.0% |
| !! | TATTAAAAAAACACAATCAA+TGG | + | chr3_3:84398610-84398629 | Msa0479410:intron | 15.0% |
| !!! | TATTTAGTTAATTTTATGGT+TGG | + | chr3_3:84398741-84398760 | Msa0479410:intron | 15.0% |
| !!! | ATTTAGTTAATTTTATGGTT+GGG | + | chr3_3:84398742-84398761 | Msa0479410:intron | 15.0% |
| !! | ATTCATAAGTCAATTAATAA+TGG | - | chr3_3:84398819-84398838 | None:intergenic | 15.0% |
| !!! | TTGATTTATAGTTTTATACA+TGG | + | chr3_3:84398894-84398913 | Msa0479410:intron | 15.0% |
| !!! | AATTTTTTATCAATATCCTA+TGG | + | chr3_3:84399991-84400010 | Msa0479410:intron | 15.0% |
| !! | TATACTATAATCCATTATTT+GGG | - | chr3_3:84400179-84400198 | None:intergenic | 15.0% |
| !! | TTGAAGTATATTAAATGTAA+AGG | - | chr3_3:84401083-84401102 | None:intergenic | 15.0% |
| !!! | TACTACTTTAATTTTTCTAA+TGG | + | chr3_3:84401217-84401236 | Msa0479410:intron | 15.0% |
| !!! | TACTACTTTAATTTTTCTAA+TGG | + | chr3_3:84401217-84401236 | Msa0479410:intron | 15.0% |
| !!! | TAGAAATCACATATTTTTAT+GGG | - | chr3_3:84401768-84401787 | None:intergenic | 15.0% |
| !!! | TTAGAATTTTGATACATTGA+AGG | - | chr3_3:84396396-84396415 | None:intergenic | 20.0% |
| !! | AAAGGATTATTTAAGTGTTA+GGG | - | chr3_3:84396457-84396476 | None:intergenic | 20.0% |
| !! | TAAAGGATTATTTAAGTGTT+AGG | - | chr3_3:84396458-84396477 | None:intergenic | 20.0% |
| !! | CACAATAACTCTATTTATAT+AGG | + | chr3_3:84396483-84396502 | Msa0479410:intron | 20.0% |
| !! | ATAATAAGTAAGTCTATTGA+AGG | + | chr3_3:84396548-84396567 | Msa0479410:intron | 20.0% |
| !! | ATTAACAAAATGCACAATTA+TGG | + | chr3_3:84396620-84396639 | Msa0479410:intron | 20.0% |
| !!! | CATTAAAGACATTTTTTTGA+AGG | - | chr3_3:84396944-84396963 | None:intergenic | 20.0% |
| !! | ACTTATTTATGTGTTAAACA+TGG | - | chr3_3:84397021-84397040 | None:intergenic | 20.0% |
| !! | GGAAAAAAAATAAAACTAAC+TGG | - | chr3_3:84397268-84397287 | None:intergenic | 20.0% |
| !! | ATTAAAACATAAAAACTTGG+TGG | + | chr3_3:84397380-84397399 | Msa0479410:intron | 20.0% |
| !! | CTAAAAATACTCACAAATAT+TGG | - | chr3_3:84397751-84397770 | None:intergenic | 20.0% |
| !!! | TATTTGTTTTGATGCATTAA+TGG | + | chr3_3:84398444-84398463 | Msa0479410:intron | 20.0% |
| !! | AGTAATAAAATGTATGAGAA+AGG | - | chr3_3:84398515-84398534 | None:intergenic | 20.0% |
| !!! | GTTTTTTTTAGAGGATTTTA+TGG | + | chr3_3:84398764-84398783 | Msa0479410:intron | 20.0% |
| !!! | AAAGATCTATCCATTTTTTT+AGG | - | chr3_3:84399252-84399271 | None:intergenic | 20.0% |
| !!! | AAAAACTACCATTTTTCATT+AGG | - | chr3_3:84399459-84399478 | None:intergenic | 20.0% |
| !! | TCTTATTCAAACATTAAACA+TGG | - | chr3_3:84399526-84399545 | None:intergenic | 20.0% |
| !!! | ATAAGAGTATTTGAAGTAAA+AGG | + | chr3_3:84399540-84399559 | Msa0479410:intron | 20.0% |
| !! | GACAATTTATAATATATGCA+AGG | + | chr3_3:84399642-84399661 | Msa0479410:intron | 20.0% |
| !! | TAAGTTAATTAACTTTGTTG+TGG | + | chr3_3:84399956-84399975 | Msa0479410:intron | 20.0% |
| !! | GTATACTATAATCCATTATT+TGG | - | chr3_3:84400180-84400199 | None:intergenic | 20.0% |
| !!! | CATAAAAAGACTTTCTATTT+TGG | + | chr3_3:84400288-84400307 | Msa0479410:intron | 20.0% |
| !! | AAATTAATACCCTTAATAGT+GGG | - | chr3_3:84400642-84400661 | None:intergenic | 20.0% |
| !! | AAAATTAATACCCTTAATAG+TGG | - | chr3_3:84400643-84400662 | None:intergenic | 20.0% |
| !! | TAAACTTAAGAAAAAATACC+TGG | - | chr3_3:84400702-84400721 | None:intergenic | 20.0% |
| !!! | ATACTAATTGTTTAAGACAA+TGG | - | chr3_3:84400729-84400748 | None:intergenic | 20.0% |
| !!! | ATCATTTTATATGCATATAG+TGG | + | chr3_3:84401257-84401276 | Msa0479410:intron | 20.0% |
| !!! | ATCATTTTATATGCATATAG+TGG | + | chr3_3:84401257-84401276 | Msa0479410:intron | 20.0% |
| !!! | AGAAATCACATATTTTTATG+GGG | - | chr3_3:84401767-84401786 | None:intergenic | 20.0% |
| !!! | GTAGAAATCACATATTTTTA+TGG | - | chr3_3:84401769-84401788 | None:intergenic | 20.0% |
| !! | GAAACAATGTTCATTTATAT+AGG | - | chr3_3:84401839-84401858 | None:intergenic | 20.0% |
| ! | AGTGGTAATTTGAAGAATAT+GGG | - | chr3_3:84395772-84395791 | None:intergenic | 25.0% |
| ! | TAGTGGTAATTTGAAGAATA+TGG | - | chr3_3:84395773-84395792 | None:intergenic | 25.0% |
| !!! | AGAGCTGATTTTAAAATCAT+GGG | - | chr3_3:84395923-84395942 | None:intergenic | 25.0% |
| !!! | AAGAGCTGATTTTAAAATCA+TGG | - | chr3_3:84395924-84395943 | None:intergenic | 25.0% |
| ! | TATTTGGTTAAGAATGAAGA+TGG | + | chr3_3:84396163-84396182 | Msa0479410:CDS | 25.0% |
| !! | TAATGGGGTAATAATCATTT+TGG | + | chr3_3:84396338-84396357 | Msa0479410:intron | 25.0% |
| ! | AGAGTTATTGTGAGTATTAA+AGG | - | chr3_3:84396475-84396494 | None:intergenic | 25.0% |
| ! | ACAATAAGTAAGTACGTATA+AGG | + | chr3_3:84396516-84396535 | Msa0479410:intron | 25.0% |
| !! | TTTGAAATTTCGATACATTG+AGG | + | chr3_3:84396648-84396667 | Msa0479410:intron | 25.0% |
| ! | TTGAAATTTCGATACATTGA+GGG | + | chr3_3:84396649-84396668 | Msa0479410:intron | 25.0% |
| ! | TTATAAGTGATAGATAGTTC+TGG | + | chr3_3:84396777-84396796 | Msa0479410:intron | 25.0% |
| ! | TATCATTAAAGAACATGTCT+AGG | - | chr3_3:84396917-84396936 | None:intergenic | 25.0% |
| ! | TTTGTCAAAATACTCAAAAG+TGG | - | chr3_3:84397088-84397107 | None:intergenic | 25.0% |
| !! | AAACATTAGGAGTATACATT+AGG | + | chr3_3:84397526-84397545 | Msa0479410:intron | 25.0% |
| ! | AAAATACTCACAAATATTGG+AGG | - | chr3_3:84397748-84397767 | None:intergenic | 25.0% |
| !!! | GTATTTTTAGAATATGTGTG+AGG | + | chr3_3:84397761-84397780 | Msa0479410:intron | 25.0% |
| ! | ACAAAACAAACATAAGCATA+TGG | + | chr3_3:84397911-84397930 | Msa0479410:intron | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr3_3:84398031-84398050 | Msa0479410:intron | 25.0% |
| ! | GCAAGTAAATAACTAAAAAG+TGG | + | chr3_3:84398031-84398050 | Msa0479410:intron | 25.0% |
| ! | ACGTAGTTGTCAATTTAAAT+CGG | - | chr3_3:84398403-84398422 | None:intergenic | 25.0% |
| !! | GAAGTGTATAATTAGTTTCT+TGG | + | chr3_3:84398476-84398495 | Msa0479410:intron | 25.0% |
| !! | ATACATTTTATTACTCTGCA+GGG | + | chr3_3:84398520-84398539 | Msa0479410:intron | 25.0% |
| !! | ATGAAATGTTTTCATTTGCA+CGG | + | chr3_3:84398641-84398660 | Msa0479410:intron | 25.0% |
| !! | AAGTTTTTATCACTCCATAA+TGG | + | chr3_3:84398692-84398711 | Msa0479410:intron | 25.0% |
| !!! | TTTTAGAGGATTTTATGGTA+AGG | + | chr3_3:84398769-84398788 | Msa0479410:intron | 25.0% |
| !! | TTTAGAGGATTTTATGGTAA+GGG | + | chr3_3:84398770-84398789 | Msa0479410:intron | 25.0% |
| ! | AGATTTGGATTTAGAAATAG+CGG | + | chr3_3:84398850-84398869 | Msa0479410:intron | 25.0% |
| !! | CTTTGAACTTTAAGAAAACT+TGG | + | chr3_3:84399268-84399287 | Msa0479410:intron | 25.0% |
| !! | AACTTTAAGAAAACTTGGTT+TGG | + | chr3_3:84399273-84399292 | Msa0479410:intron | 25.0% |
| !! | TAGAATTTGTTTAATCACAC+CGG | + | chr3_3:84399334-84399353 | Msa0479410:intron | 25.0% |
| !!! | AATATTTTTGTTACGATGTC+CGG | - | chr3_3:84399356-84399375 | None:intergenic | 25.0% |
| ! | TTTATAATATATGCAAGGTC+CGG | + | chr3_3:84399647-84399666 | Msa0479410:intron | 25.0% |
| !!! | GAAATAATCACTCACTTTTA+AGG | - | chr3_3:84399799-84399818 | None:intergenic | 25.0% |
| ! | AGATTAAAATCCTAATCACA+TGG | - | chr3_3:84400046-84400065 | None:intergenic | 25.0% |
| ! | TTATTTATTTCATACACCAC+TGG | - | chr3_3:84400069-84400088 | None:intergenic | 25.0% |
| !!! | CAAGAGAGATTTTTTTTTGA+GGG | - | chr3_3:84400224-84400243 | None:intergenic | 25.0% |
| !!! | TCAAGAGAGATTTTTTTTTG+AGG | - | chr3_3:84400225-84400244 | None:intergenic | 25.0% |
| !! | ATGTCATCTTTTTCTTAAGA+AGG | - | chr3_3:84400271-84400290 | None:intergenic | 25.0% |
| !! | TTTAACAAGGTTTTCAACAA+GGG | + | chr3_3:84400486-84400505 | Msa0479410:CDS | 25.0% |
| !! | AAGAATTTTCTTCATTGTGA+TGG | - | chr3_3:84400529-84400548 | None:intergenic | 25.0% |
| ! | TCAAAATATCCCACTATTAA+GGG | + | chr3_3:84400630-84400649 | Msa0479410:CDS | 25.0% |
| !! | TAACATTTGATGTTTTGTGT+AGG | + | chr3_3:84400802-84400821 | Msa0479410:intron | 25.0% |
| ! | TTATGTTAGCATAAAGAAGA+AGG | - | chr3_3:84400934-84400953 | None:intergenic | 25.0% |
| !! | GCTAATTTTATACAAACAAG+AGG | - | chr3_3:84401114-84401133 | None:intergenic | 25.0% |
| ! | GAAATGCAATGAAAGAAATT+AGG | + | chr3_3:84401162-84401181 | Msa0479410:intron | 25.0% |
| !! | TTAAGAAGGTTTAAGTTCTT+TGG | + | chr3_3:84401681-84401700 | Msa0479410:exon | 25.0% |
| ! | ATGTGATTTCTACTTCTATT+CGG | + | chr3_3:84401776-84401795 | Msa0479410:three_prime_UTR | 25.0% |
| ! | ATGAACATTGTTTCATATTG+TGG | + | chr3_3:84401845-84401864 | Msa0479410:three_prime_UTR | 25.0% |
| ! | ATGATGATTAATTAAAGAGC+TGG | - | chr3_3:84401899-84401918 | None:intergenic | 25.0% |
| TTAGAAATCATTGCTAAAGC+TGG | + | chr3_3:84395956-84395975 | Msa0479410:CDS | 30.0% | |
| !!! | GACTATTTTGACTAACAAAG+TGG | - | chr3_3:84396435-84396454 | None:intergenic | 30.0% |
| CTCGTCTTAGAATTAGAATT+TGG | - | chr3_3:84396843-84396862 | None:intergenic | 30.0% | |
| !! | CAAATTCTAATTCTAAGACG+AGG | + | chr3_3:84396841-84396860 | Msa0479410:intron | 30.0% |
| ATTAAAGAACATGTCTAGGT+CGG | - | chr3_3:84396913-84396932 | None:intergenic | 30.0% | |
| AATTGAAAACTAGCAGCATA+TGG | + | chr3_3:84396966-84396985 | Msa0479410:intron | 30.0% | |
| AATAAGTGACCAAAGATGAT+TGG | + | chr3_3:84397034-84397053 | Msa0479410:intron | 30.0% | |
| ATGTGAGAGTTAGCAAAAAA+AGG | + | chr3_3:84397219-84397238 | Msa0479410:intron | 30.0% | |
| TAACTTACTTGAATAACCGT+CGG | - | chr3_3:84397301-84397320 | None:intergenic | 30.0% | |
| !!! | ACACCCACTAGTTTTTATAT+GGG | + | chr3_3:84397999-84398018 | Msa0479410:intron | 30.0% |
| ACTCCCATATAAAAACTAGT+GGG | - | chr3_3:84398005-84398024 | None:intergenic | 30.0% | |
| TTATAGCAACATACACCTTA+GGG | - | chr3_3:84398066-84398085 | None:intergenic | 30.0% | |
| ACCTTCTAACAATAACAAGT+GGG | + | chr3_3:84398089-84398108 | Msa0479410:intron | 30.0% | |
| ACTCCCACATAAAAATTAGT+GGG | + | chr3_3:84398237-84398256 | Msa0479410:intron | 30.0% | |
| ! | ACACCCACTAATTTTTATGT+GGG | - | chr3_3:84398243-84398262 | None:intergenic | 30.0% |
| ! | CATACATTTTATTACTCTGC+AGG | + | chr3_3:84398519-84398538 | Msa0479410:intron | 30.0% |
| ! | TACATTTTATTACTCTGCAG+GGG | + | chr3_3:84398521-84398540 | Msa0479410:intron | 30.0% |
| ! | TGAAATGTTTTCATTTGCAC+GGG | + | chr3_3:84398642-84398661 | Msa0479410:intron | 30.0% |
| TTTCTTCGAAAGAACCATTA+TGG | - | chr3_3:84398709-84398728 | None:intergenic | 30.0% | |
| !!! | TATGGTTGGGTTTTTTTTAG+AGG | + | chr3_3:84398755-84398774 | Msa0479410:intron | 30.0% |
| GAATATAGTGTCGTAAGATT+TGG | + | chr3_3:84398835-84398854 | Msa0479410:intron | 30.0% | |
| ! | GATTTAGAAATAGCGGAAAT+GGG | + | chr3_3:84398857-84398876 | Msa0479410:intron | 30.0% |
| AGAAATGTTGAATAGTGAGT+TGG | - | chr3_3:84399010-84399029 | None:intergenic | 30.0% | |
| TTCATATTGCTACAGGAATT+TGG | - | chr3_3:84399083-84399102 | None:intergenic | 30.0% | |
| ! | AGTCTTGAGCTTTAACAAAT+TGG | - | chr3_3:84399129-84399148 | None:intergenic | 30.0% |
| ! | GTTAAAGCTCAAGACTATTT+TGG | + | chr3_3:84399133-84399152 | Msa0479410:intron | 30.0% |
| CTCAGATAAGCCTAAAAAAA+TGG | + | chr3_3:84399239-84399258 | Msa0479410:intron | 30.0% | |
| !! | GTTCTAGTTTACATTGTTAG+AGG | + | chr3_3:84399497-84399516 | Msa0479410:intron | 30.0% |
| TTATAATATATGCAAGGTCC+GGG | + | chr3_3:84399648-84399667 | Msa0479410:intron | 30.0% | |
| TTATCTTTCATTCATGCCAT+AGG | - | chr3_3:84400010-84400029 | None:intergenic | 30.0% | |
| GATATCTTAACCATGTGATT+AGG | + | chr3_3:84400033-84400052 | Msa0479410:intron | 30.0% | |
| !! | ATTAGGATTTTAATCTCCAG+TGG | + | chr3_3:84400050-84400069 | Msa0479410:intron | 30.0% |
| ! | TCCATTATTTGGGTTAACTT+CGG | - | chr3_3:84400169-84400188 | None:intergenic | 30.0% |
| TTGAAAACCTTGTTAAACCT+TGG | - | chr3_3:84400483-84400502 | None:intergenic | 30.0% | |
| ! | GTTTAACAAGGTTTTCAACA+AGG | + | chr3_3:84400485-84400504 | Msa0479410:CDS | 30.0% |
| ! | TTAACAAGGTTTTCAACAAG+GGG | + | chr3_3:84400487-84400506 | Msa0479410:CDS | 30.0% |
| CTACATCAACAAGAGATTTA+AGG | - | chr3_3:84400575-84400594 | None:intergenic | 30.0% | |
| CTTAAATCTCTTGTTGATGT+AGG | + | chr3_3:84400573-84400592 | Msa0479410:CDS | 30.0% | |
| CTCAAAATATCCCACTATTA+AGG | + | chr3_3:84400629-84400648 | Msa0479410:CDS | 30.0% | |
| GAAAAAATACCTGGATAAGA+TGG | - | chr3_3:84400693-84400712 | None:intergenic | 30.0% | |
| !! | ATGCATAACACAGTTGTTTT+AGG | + | chr3_3:84401051-84401070 | Msa0479410:intron | 30.0% |
| TGCATTTCTAAATCTAGTGA+CGG | - | chr3_3:84401150-84401169 | None:intergenic | 30.0% | |
| !! | ATTTTTGAAGAACTGCTATG+AGG | + | chr3_3:84401430-84401449 | Msa0479410:CDS | 30.0% |
| !! | ATGTGTTGAAAGCATTACAA+TGG | - | chr3_3:84401646-84401665 | None:intergenic | 30.0% |
| !! | GAGTTTTGATATTGAGATTG+TGG | + | chr3_3:84401716-84401735 | Msa0479410:three_prime_UTR | 30.0% |
| !! | TATTTTTATGGGGAAAGCTT+AGG | - | chr3_3:84401757-84401776 | None:intergenic | 30.0% |
| TGAAGAATATGGGATAACGA+AGG | - | chr3_3:84395762-84395781 | None:intergenic | 35.0% | |
| ! | AGGTTTTTGTGAGATTGTAG+TGG | - | chr3_3:84395790-84395809 | None:intergenic | 35.0% |
| TGCTTCTTCATCTGATATGT+GGG | - | chr3_3:84395861-84395880 | None:intergenic | 35.0% | |
| TTGCTTCTTCATCTGATATG+TGG | - | chr3_3:84395862-84395881 | None:intergenic | 35.0% | |
| AGCTGAGAAGCAATTTCAAT+AGG | - | chr3_3:84396001-84396020 | None:intergenic | 35.0% | |
| GGAAAGATTCAGAGACTTTA+TGG | + | chr3_3:84396121-84396140 | Msa0479410:CDS | 35.0% | |
| GATTCAGAGACTTTATGGTT+TGG | + | chr3_3:84396126-84396145 | Msa0479410:CDS | 35.0% | |
| CATGAGATTAAGAGCAGAAA+TGG | - | chr3_3:84396194-84396213 | None:intergenic | 35.0% | |
| TGCTCTTAATCTCATGAATC+AGG | + | chr3_3:84396198-84396217 | Msa0479410:CDS | 35.0% | |
| CAGAGTAAAAAACAGAGCTT+AGG | - | chr3_3:84396260-84396279 | None:intergenic | 35.0% | |
| ACTAACAAAGTGGACAATCA+GGG | - | chr3_3:84396425-84396444 | None:intergenic | 35.0% | |
| TCTAGGTCGGATTAAACATT+TGG | - | chr3_3:84396900-84396919 | None:intergenic | 35.0% | |
| ACAACCTAACCAATCATCTT+TGG | - | chr3_3:84397046-84397065 | None:intergenic | 35.0% | |
| TAACTCTCACATATTGTCGT+GGG | - | chr3_3:84397211-84397230 | None:intergenic | 35.0% | |
| ! | TGCTTACAATTTAGGACGAA+AGG | - | chr3_3:84397328-84397347 | None:intergenic | 35.0% |
| TACTCACAAATATTGGAGGA+TGG | - | chr3_3:84397744-84397763 | None:intergenic | 35.0% | |
| !!! | CACACCCACTAGTTTTTATA+TGG | + | chr3_3:84397998-84398017 | Msa0479410:intron | 35.0% |
| CACTCCCATATAAAAACTAG+TGG | - | chr3_3:84398006-84398025 | None:intergenic | 35.0% | |
| AAGTGGTTAAATACACCCTA+AGG | + | chr3_3:84398048-84398067 | Msa0479410:intron | 35.0% | |
| GTTATAGCAACATACACCTT+AGG | - | chr3_3:84398067-84398086 | None:intergenic | 35.0% | |
| CACCTTCTAACAATAACAAG+TGG | + | chr3_3:84398088-84398107 | Msa0479410:intron | 35.0% | |
| !! | ACCCACTTGTTATTGTTAGA+AGG | - | chr3_3:84398093-84398112 | None:intergenic | 35.0% |
| TGTGTTCTAGCAAATCCTAT+AGG | + | chr3_3:84398112-84398131 | Msa0479410:intron | 35.0% | |
| !!! | ACACCCACTAGTTTTTATGT+GGG | + | chr3_3:84398148-84398167 | Msa0479410:intron | 35.0% |
| ACTCCCACATAAAAACTAGT+GGG | - | chr3_3:84398154-84398173 | None:intergenic | 35.0% | |
| AAGTGGTTAATTACACCCTA+AGG | + | chr3_3:84398197-84398216 | Msa0479410:intron | 35.0% | |
| TTTAGCAAAGCTACACCTTA+GGG | - | chr3_3:84398215-84398234 | None:intergenic | 35.0% | |
| ! | TTTTAGCAAAGCTACACCTT+AGG | - | chr3_3:84398216-84398235 | None:intergenic | 35.0% |
| CACTCCCACATAAAAATTAG+TGG | + | chr3_3:84398236-84398255 | Msa0479410:intron | 35.0% | |
| ! | CACACCCACTAATTTTTATG+TGG | - | chr3_3:84398244-84398263 | None:intergenic | 35.0% |
| CTTTATGTAAGCATGATCGT+GGG | + | chr3_3:84398370-84398389 | Msa0479410:intron | 35.0% | |
| ! | GGATTTAGAAATAGCGGAAA+TGG | + | chr3_3:84398856-84398875 | Msa0479410:intron | 35.0% |
| ! | ACATTATGATGATGACCTAG+AGG | + | chr3_3:84398962-84398981 | Msa0479410:intron | 35.0% |
| ! | CATTATGATGATGACCTAGA+GGG | + | chr3_3:84398963-84398982 | Msa0479410:intron | 35.0% |
| ! | AATGTTGAATAGTGAGTTGG+TGG | - | chr3_3:84399007-84399026 | None:intergenic | 35.0% |
| !! | AATATTGGTTCACACTCCAT+TGG | - | chr3_3:84399048-84399067 | None:intergenic | 35.0% |
| TGGAAGCTTTACAGGAATAT+TGG | - | chr3_3:84399063-84399082 | None:intergenic | 35.0% | |
| CTAACTGTTCATATTGCTAC+AGG | - | chr3_3:84399090-84399109 | None:intergenic | 35.0% | |
| TATAATATATGCAAGGTCCG+GGG | + | chr3_3:84399649-84399668 | Msa0479410:intron | 35.0% | |
| TAAAAGATGCAGTCCTTGAT+GGG | + | chr3_3:84400400-84400419 | Msa0479410:CDS | 35.0% | |
| ATTCCATTCAACAAGGCTTA+TGG | + | chr3_3:84400426-84400445 | Msa0479410:CDS | 35.0% | |
| !! | ATTCCATAAGCCTTGTTGAA+TGG | - | chr3_3:84400432-84400451 | None:intergenic | 35.0% |
| ATCTGTTCCATGGTATTCAA+AGG | - | chr3_3:84400460-84400479 | None:intergenic | 35.0% | |
| AACAGATCCAAGGTTTAACA+AGG | + | chr3_3:84400473-84400492 | Msa0479410:CDS | 35.0% | |
| AAAATTCTTGAGACCTACAC+AGG | + | chr3_3:84400540-84400559 | Msa0479410:CDS | 35.0% | |
| AAATCTCTTGTTGATGTAGG+TGG | + | chr3_3:84400576-84400595 | Msa0479410:CDS | 35.0% | |
| CATGTTTGTCAGTATTCCAA+AGG | + | chr3_3:84400846-84400865 | Msa0479410:CDS | 35.0% | |
| ATAAAAACAGCATCAGCCTT+TGG | - | chr3_3:84400865-84400884 | None:intergenic | 35.0% | |
| ATGTTCTCTATCTTAGGTGT+CGG | - | chr3_3:84400968-84400987 | None:intergenic | 35.0% | |
| ACCTAAGATAGAGAACATGT+TGG | + | chr3_3:84400970-84400989 | Msa0479410:intron | 35.0% | |
| CCTAAGATAGAGAACATGTT+GGG | + | chr3_3:84400971-84400990 | Msa0479410:intron | 35.0% | |
| CAACTGTGTTATGCATAACA+CGG | - | chr3_3:84401047-84401066 | None:intergenic | 35.0% | |
| !! | TATAGTGGATTTGTCATGAC+TGG | + | chr3_3:84401272-84401291 | Msa0479410:intron | 35.0% |
| !! | TATAGTGGATTTGTCATGAC+TGG | + | chr3_3:84401272-84401291 | Msa0479410:intron | 35.0% |
| !! | ACAATCACTTTTCCATTGTC+TGG | - | chr3_3:84401461-84401480 | None:intergenic | 35.0% |
| AGACAATGGAAAAGTGATTG+TGG | + | chr3_3:84401460-84401479 | Msa0479410:CDS | 35.0% | |
| TCACATTGATGTGATCATGT+TGG | + | chr3_3:84401538-84401557 | Msa0479410:CDS | 35.0% | |
| GAGAACACAAAAAGAGTTTG+AGG | + | chr3_3:84401583-84401602 | Msa0479410:CDS | 35.0% | |
| !! | TACAATGGACTTTGAAACCT+TGG | - | chr3_3:84401631-84401650 | None:intergenic | 35.0% |
| TGCTTTCAACACATACATCA+TGG | + | chr3_3:84401652-84401671 | Msa0479410:CDS | 35.0% | |
| CATCATGGAGTTTCTTAAGA+AGG | + | chr3_3:84401667-84401686 | Msa0479410:CDS | 35.0% | |
| GATTTCTACTTCTATTCGGT+AGG | + | chr3_3:84401780-84401799 | Msa0479410:three_prime_UTR | 35.0% | |
| CAATCCACTTTGCATCATTG+AGG | + | chr3_3:84395719-84395738 | Msa0479410:five_prime_UTR | 40.0% | |
| AACCTCATCAATCACAACCA+TGG | + | chr3_3:84395805-84395824 | Msa0479410:exon | 40.0% | |
| ACCTCATCAATCACAACCAT+GGG | + | chr3_3:84395806-84395825 | Msa0479410:exon | 40.0% | |
| TCTTCATCTGATATGTGGGT+TGG | - | chr3_3:84395857-84395876 | None:intergenic | 40.0% | |
| ! | TGAAGCACTTGCTAATTGCA+TGG | - | chr3_3:84395894-84395913 | None:intergenic | 40.0% |
| ATAGGTGAAATTTGAGCACC+AGG | - | chr3_3:84395983-84396002 | None:intergenic | 40.0% | |
| AACATTCGGTCCAACATAAC+TGG | - | chr3_3:84396046-84396065 | None:intergenic | 40.0% | |
| TCAGTTCGTACTCAACAAGA+TGG | + | chr3_3:84396100-84396119 | Msa0479410:CDS | 40.0% | |
| GGCTACTGTTGCTAAGTATT+TGG | + | chr3_3:84396147-84396166 | Msa0479410:CDS | 40.0% | |
| ! | GAATCAGGATAAAGTGCTCA+TGG | + | chr3_3:84396213-84396232 | Msa0479410:CDS | 40.0% |
| ! | ATAAAGTGCTCATGGAAAGC+TGG | + | chr3_3:84396221-84396240 | Msa0479410:CDS | 40.0% |
| ! | TGCTCTGTTCTCTGTTTTGT+TGG | + | chr3_3:84396289-84396308 | Msa0479410:intron | 40.0% |
| GACTAACAAAGTGGACAATC+AGG | - | chr3_3:84396426-84396445 | None:intergenic | 40.0% | |
| TTACTATTCGTTCCTCGTTC+AGG | + | chr3_3:84396679-84396698 | Msa0479410:intron | 40.0% | |
| TACTATTCGTTCCTCGTTCA+GGG | + | chr3_3:84396680-84396699 | Msa0479410:intron | 40.0% | |
| ! | ACGAGGTTAGAGTCATCTTT+TGG | + | chr3_3:84396858-84396877 | Msa0479410:intron | 40.0% |
| ! | GTGACCAAAGATGATTGGTT+AGG | + | chr3_3:84397039-84397058 | Msa0479410:intron | 40.0% |
| CTAACTCTCACATATTGTCG+TGG | - | chr3_3:84397212-84397231 | None:intergenic | 40.0% | |
| ! | TTTTCCTTCTCTCTTTCCGA+CGG | + | chr3_3:84397282-84397301 | Msa0479410:intron | 40.0% |
| TGTTGAGTAACACACGCATA+CGG | + | chr3_3:84397830-84397849 | Msa0479410:intron | 40.0% | |
| GTGTTCTAGCAAATGCCTAT+AGG | - | chr3_3:84398130-84398149 | None:intergenic | 40.0% | |
| !!! | CACACCCACTAGTTTTTATG+TGG | + | chr3_3:84398147-84398166 | Msa0479410:intron | 40.0% |
| CACTCCCACATAAAAACTAG+TGG | - | chr3_3:84398155-84398174 | None:intergenic | 40.0% | |
| GCTTTATGTAAGCATGATCG+TGG | + | chr3_3:84398369-84398388 | Msa0479410:intron | 40.0% | |
| ! | TTTTATTACTCTGCAGGGGT+TGG | + | chr3_3:84398525-84398544 | Msa0479410:intron | 40.0% |
| ! | AATGTTTTCATTTGCACGGG+AGG | + | chr3_3:84398645-84398664 | Msa0479410:intron | 40.0% |
| ! | GCTTTTGACGTTAGTGTTTG+TGG | - | chr3_3:84398931-84398950 | None:intergenic | 40.0% |
| CAGGAATTTGGAAGCTTTAC+AGG | - | chr3_3:84399071-84399090 | None:intergenic | 40.0% | |
| ! | GCATCTTGAGTGATTAGTCA+TGG | + | chr3_3:84400127-84400146 | Msa0479410:intron | 40.0% |
| GCCGAAGTTAACCCAAATAA+TGG | + | chr3_3:84400165-84400184 | Msa0479410:intron | 40.0% | |
| AGAATGTGTGTGCAATTGGA+AGG | - | chr3_3:84400328-84400347 | None:intergenic | 40.0% | |
| AGAGAGAATGTGTGTGCAAT+TGG | - | chr3_3:84400332-84400351 | None:intergenic | 40.0% | |
| CCTACAATGAGTAAGGACTA+AGG | - | chr3_3:84400373-84400392 | None:intergenic | 40.0% | |
| CCTTAGTCCTTACTCATTGT+AGG | + | chr3_3:84400370-84400389 | Msa0479410:intron | 40.0% | |
| ! | CATCAAGGACTGCATCTTTT+AGG | - | chr3_3:84400401-84400420 | None:intergenic | 40.0% |
| CTAAAAGATGCAGTCCTTGA+TGG | + | chr3_3:84400399-84400418 | Msa0479410:CDS | 40.0% | |
| AAAAGATGCAGTCCTTGATG+GGG | + | chr3_3:84400401-84400420 | Msa0479410:CDS | 40.0% | |
| ATGACAGCCTTTGAATACCA+TGG | + | chr3_3:84400450-84400469 | Msa0479410:CDS | 40.0% | |
| AATACCATGGAACAGATCCA+AGG | + | chr3_3:84400463-84400482 | Msa0479410:CDS | 40.0% | |
| TAAACCTTGGATCTGTTCCA+TGG | - | chr3_3:84400470-84400489 | None:intergenic | 40.0% | |
| ! | TGGAGCATCTTCAATGACAT+GGG | - | chr3_3:84400673-84400692 | None:intergenic | 40.0% |
| ! | ATGGAGCATCTTCAATGACA+TGG | - | chr3_3:84400674-84400693 | None:intergenic | 40.0% |
| !!! | GGCTGATGCTGTTTTTATGA+AGG | + | chr3_3:84400867-84400886 | Msa0479410:CDS | 40.0% |
| AAGGCCAGATGATTGTGTTA+GGG | - | chr3_3:84400915-84400934 | None:intergenic | 40.0% | |
| CCCAACATGTTCTCTATCTT+AGG | - | chr3_3:84400974-84400993 | None:intergenic | 40.0% | |
| ! | AATGTGAACCACACCTTTTG+TGG | - | chr3_3:84401525-84401544 | None:intergenic | 40.0% |
| !! | ATCATGTTGGCTCATAATCC+AGG | + | chr3_3:84401551-84401570 | Msa0479410:CDS | 40.0% |
| GTGACCTCAATGATGCAAAG+TGG | - | chr3_3:84395726-84395745 | None:intergenic | 45.0% | |
| ACCCATGGTTGTGATTGATG+AGG | - | chr3_3:84395810-84395829 | None:intergenic | 45.0% | |
| ATCACAACCATGGGTTCAAC+AGG | + | chr3_3:84395815-84395834 | Msa0479410:exon | 45.0% | |
| AGTTTCACCTGTTGAACCCA+TGG | - | chr3_3:84395825-84395844 | None:intergenic | 45.0% | |
| TTGCTAATTGCATGGCGAAG+AGG | - | chr3_3:84395886-84395905 | None:intergenic | 45.0% | |
| ATCATTGCTAAAGCTGGACC+TGG | + | chr3_3:84395962-84395981 | Msa0479410:CDS | 45.0% | |
| !! | GTGCATCAGGGTTAGTTGTT+GGG | - | chr3_3:84396024-84396043 | None:intergenic | 45.0% |
| CCAACATAACTGGTGCATCA+GGG | - | chr3_3:84396036-84396055 | None:intergenic | 45.0% | |
| TCCAACATAACTGGTGCATC+AGG | - | chr3_3:84396037-84396056 | None:intergenic | 45.0% | |
| AAGCCAAGAGACGCAACATT+CGG | - | chr3_3:84396060-84396079 | None:intergenic | 45.0% | |
| GAGTACGAACTGAACAAGTG+AGG | - | chr3_3:84396093-84396112 | None:intergenic | 45.0% | |
| ATAACCGTCGGAAAGAGAGA+AGG | - | chr3_3:84397289-84397308 | None:intergenic | 45.0% | |
| ! | CGAGCTTATCTCAGTTGGTA+AGG | + | chr3_3:84397862-84397881 | Msa0479410:intron | 45.0% |
| TCAAAAATGAGGGTCCCTCT+AGG | - | chr3_3:84398980-84398999 | None:intergenic | 45.0% | |
| TGGTGGCCACTCAAAAATGA+GGG | - | chr3_3:84398990-84399009 | None:intergenic | 45.0% | |
| ! | TTGGTGGCCACTCAAAAATG+AGG | - | chr3_3:84398991-84399010 | None:intergenic | 45.0% |
| ! | ATTGGTTCACACTCCATTGG+CGG | - | chr3_3:84399045-84399064 | None:intergenic | 45.0% |
| GGGTTGGGCCTAATGAAAAA+TGG | + | chr3_3:84399448-84399467 | Msa0479410:intron | 45.0% | |
| TTGTCCTCGCTTAACTCAGT+TGG | + | chr3_3:84399615-84399634 | Msa0479410:intron | 45.0% | |
| CATACCAACTGAGTTAAGCG+AGG | - | chr3_3:84399622-84399641 | None:intergenic | 45.0% | |
| ! | CTCGCTTAACTCAGTTGGTA+TGG | + | chr3_3:84399620-84399639 | Msa0479410:intron | 45.0% |
| GGTGGTACCTACAATGAGTA+AGG | - | chr3_3:84400380-84400399 | None:intergenic | 45.0% | |
| ! | CAAGGACTGCATCTTTTAGG+TGG | - | chr3_3:84400398-84400417 | None:intergenic | 45.0% |
| AAAGATGCAGTCCTTGATGG+GGG | + | chr3_3:84400402-84400421 | Msa0479410:CDS | 45.0% | |
| !! | GAGACCTACACAGGTTTTGA+AGG | + | chr3_3:84400549-84400568 | Msa0479410:CDS | 45.0% |
| AAGGCCTTCAAAACCTGTGT+AGG | - | chr3_3:84400556-84400575 | None:intergenic | 45.0% | |
| TCTCTTGTTGATGTAGGTGG+TGG | + | chr3_3:84400579-84400598 | Msa0479410:CDS | 45.0% | |
| ! | GGAGCATCTTCAATGACATG+GGG | - | chr3_3:84400672-84400691 | None:intergenic | 45.0% |
| GAAGATGCTCCATCTTATCC+AGG | + | chr3_3:84400681-84400700 | Msa0479410:CDS | 45.0% | |
| TGTGTAGGAGTTGAGCATGT+TGG | + | chr3_3:84400817-84400836 | Msa0479410:intron | 45.0% | |
| CCAGATGATTGTGTTAGGGT+AGG | - | chr3_3:84400911-84400930 | None:intergenic | 45.0% | |
| CCTACCCTAACACAATCATC+TGG | + | chr3_3:84400908-84400927 | Msa0479410:intron | 45.0% | |
| GAAGGCCAGATGATTGTGTT+AGG | - | chr3_3:84400916-84400935 | None:intergenic | 45.0% | |
| !! | GGGTGTCATTGTCAACATGT+TGG | + | chr3_3:84400991-84401010 | Msa0479410:intron | 45.0% |
| ! | TATGAGGCACTACCAGACAA+TGG | + | chr3_3:84401446-84401465 | Msa0479410:CDS | 45.0% |
| TGTGGCAGAATGCATACTTC+CGG | + | chr3_3:84401478-84401497 | Msa0479410:CDS | 45.0% | |
| !! | ATGTTGGCTCATAATCCAGG+TGG | + | chr3_3:84401554-84401573 | Msa0479410:CDS | 45.0% |
| !! | TGTTGGCTCATAATCCAGGT+GGG | + | chr3_3:84401555-84401574 | Msa0479410:CDS | 45.0% |
| GAGTTTGAGGATCTTGCCAA+AGG | + | chr3_3:84401596-84401615 | Msa0479410:CDS | 45.0% | |
| !!! | GTTTTTTTATTTTATATTTA+AGG | - | chr3_3:84397185-84397204 | None:intergenic | 5.0% |
| !! | TATATATATATATATATATG+GGG | + | chr3_3:84397965-84397984 | Msa0479410:intron | 5.0% |
| !! | ATATATATATATATATATAG+GGG | - | chr3_3:84398277-84398296 | None:intergenic | 5.0% |
| !!! | ATATAGTATTAATTAATTTT+GGG | + | chr3_3:84399215-84399234 | Msa0479410:intron | 5.0% |
| !! | GGTGCATCAGGGTTAGTTGT+TGG | - | chr3_3:84396025-84396044 | None:intergenic | 50.0% |
| CCCTGATGCACCAGTTATGT+TGG | + | chr3_3:84396033-84396052 | Msa0479410:CDS | 50.0% | |
| ! | GTCACTTTAGTCCCTGAACG+AGG | - | chr3_3:84396694-84396713 | None:intergenic | 50.0% |
| AGCGGAAATGGGAGAGTAAG+AGG | + | chr3_3:84398868-84398887 | Msa0479410:intron | 50.0% | |
| !! | GAGGGACCCTCATTTTTGAG+TGG | + | chr3_3:84398981-84399000 | Msa0479410:intron | 50.0% |
| TGCATTTCACCTACCGCCAA+TGG | + | chr3_3:84399029-84399048 | Msa0479410:intron | 50.0% | |
| ! | TAGTGTCGTGTTGATCGACG+AGG | + | chr3_3:84399427-84399446 | Msa0479410:intron | 50.0% |
| ! | AGTGTCGTGTTGATCGACGA+GGG | + | chr3_3:84399428-84399447 | Msa0479410:intron | 50.0% |
| TGAATGGAATGCCCCCATCA+AGG | - | chr3_3:84400416-84400435 | None:intergenic | 50.0% | |
| !! | TGGGGGCATTCCATTCAACA+AGG | + | chr3_3:84400419-84400438 | Msa0479410:CDS | 50.0% |
| ! | GTTGATGTAGGTGGTGGTAC+TGG | + | chr3_3:84400585-84400604 | Msa0479410:CDS | 50.0% |
| GTAGGAGTTGAGCATGTTGG+TGG | + | chr3_3:84400820-84400839 | Msa0479410:intron | 50.0% | |
| TTTGTGGCCAGGCTTGAATC+TGG | - | chr3_3:84401509-84401528 | None:intergenic | 50.0% | |
| GATTCAAGCCTGGCCACAAA+AGG | + | chr3_3:84401509-84401528 | Msa0479410:CDS | 50.0% | |
| TGTGTTCTCTCTTTCCCACC+TGG | - | chr3_3:84401572-84401591 | None:intergenic | 50.0% | |
| ACCTTGGAATCCAGCACCTT+TGG | - | chr3_3:84401615-84401634 | None:intergenic | 50.0% | |
| GGACCGAATGTTGCGTCTCT+TGG | + | chr3_3:84396054-84396073 | Msa0479410:CDS | 55.0% | |
| CCAACTGAGATAAGCTCGCG+AGG | - | chr3_3:84397860-84397879 | None:intergenic | 55.0% | |
| CCTCGCGAGCTTATCTCAGT+TGG | + | chr3_3:84397857-84397876 | Msa0479410:intron | 55.0% | |
| GTTCACACTCCATTGGCGGT+AGG | - | chr3_3:84399041-84399060 | None:intergenic | 55.0% | |
| ! | TCGTGTTGATCGACGAGGGT+TGG | + | chr3_3:84399432-84399451 | Msa0479410:intron | 55.0% |
| ! | CGTGTTGATCGACGAGGGTT+GGG | + | chr3_3:84399433-84399452 | Msa0479410:intron | 55.0% |
| AAGGTCCGGGGTTTAAACCC+CGG | + | chr3_3:84399661-84399680 | Msa0479410:intron | 55.0% | |
| GGCAGAATGCATACTTCCGG+TGG | + | chr3_3:84401481-84401500 | Msa0479410:CDS | 55.0% | |
| ! | AGGCTTGAATCTGGAGCCAC+CGG | - | chr3_3:84401500-84401519 | None:intergenic | 55.0% |
| AAGCCTGGCCACAAAAGGTG+TGG | + | chr3_3:84401514-84401533 | Msa0479410:CDS | 55.0% | |
| ! | GAACCACACCTTTTGTGGCC+AGG | - | chr3_3:84401520-84401539 | None:intergenic | 55.0% |
| ! | GAGGATCTTGCCAAAGGTGC+TGG | + | chr3_3:84401602-84401621 | Msa0479410:CDS | 55.0% |
| !! | GCCAAAGGTGCTGGATTCCA+AGG | + | chr3_3:84401611-84401630 | Msa0479410:CDS | 55.0% |
| GGTGACCGGGGTTTAAACCC+CGG | - | chr3_3:84399669-84399688 | None:intergenic | 60.0% | |
| GGTGGCTCCAGATTCAAGCC+TGG | + | chr3_3:84401499-84401518 | Msa0479410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 84395695 | 84401950 | 84395695 | ID=Msa0479410;Name=Msa0479410 |
| chr3_3 | mRNA | 84395695 | 84401950 | 84395695 | ID=Msa0479410-mRNA-1;Parent=Msa0479410;Name=Msa0479410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=129|1|1|1|1|1|4|256|365 |
| chr3_3 | exon | 84395695 | 84396242 | 84395695 | ID=Msa0479410-mRNA-1:exon:23943;Parent=Msa0479410-mRNA-1 |
| chr3_3 | exon | 84400392 | 84400702 | 84400392 | ID=Msa0479410-mRNA-1:exon:23944;Parent=Msa0479410-mRNA-1 |
| chr3_3 | exon | 84400824 | 84400888 | 84400824 | ID=Msa0479410-mRNA-1:exon:23945;Parent=Msa0479410-mRNA-1 |
| chr3_3 | exon | 84401392 | 84401950 | 84401392 | ID=Msa0479410-mRNA-1:exon:23946;Parent=Msa0479410-mRNA-1 |
| chr3_3 | five_prime_UTR | 84395695 | 84395823 | 84395695 | ID=Msa0479410-mRNA-1:five_prime_utr;Parent=Msa0479410-mRNA-1 |
| chr3_3 | CDS | 84395824 | 84396242 | 84395824 | ID=Msa0479410-mRNA-1:cds;Parent=Msa0479410-mRNA-1 |
| chr3_3 | CDS | 84400392 | 84400702 | 84400392 | ID=Msa0479410-mRNA-1:cds;Parent=Msa0479410-mRNA-1 |
| chr3_3 | CDS | 84400824 | 84400888 | 84400824 | ID=Msa0479410-mRNA-1:cds;Parent=Msa0479410-mRNA-1 |
| chr3_3 | CDS | 84401392 | 84401694 | 84401392 | ID=Msa0479410-mRNA-1:cds;Parent=Msa0479410-mRNA-1 |
| chr3_3 | three_prime_UTR | 84401695 | 84401950 | 84401695 | ID=Msa0479410-mRNA-1:three_prime_utr;Parent=Msa0479410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
