Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480160 | XP_013460715.1 | 96.715 | 274 | 9 | 0 | 3 | 276 | 2 | 275 | 0.0 | 549 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480160 | sp|Q9LHT0|TRNHF_ARATH | 65.637 | 259 | 89 | 0 | 16 | 274 | 5 | 263 | 1.71e-131 | 375 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480160 | A0A072UY64 | 96.715 | 274 | 9 | 0 | 3 | 276 | 2 | 275 | 0.0 | 549 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0415940 | Msa0480160 | 0.877090 | 8.300166e-69 | -8.615850e-47 |
| Msa0480160 | Msa0966120 | 0.822586 | 2.188023e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480160 | MtrunA17_Chr3g0112261 | 96.715 | 274 | 9 | 0 | 3 | 276 | 2 | 275 | 0.0 | 549 |
| Msa0480160 | MtrunA17_Chr3g0112271 | 79.044 | 272 | 57 | 0 | 5 | 276 | 2 | 273 | 2.49e-160 | 446 |
| Msa0480160 | MtrunA17_Chr3g0112171 | 77.432 | 257 | 58 | 0 | 20 | 276 | 15 | 271 | 9.11e-152 | 424 |
| Msa0480160 | MtrunA17_Chr3g0112151 | 76.062 | 259 | 62 | 0 | 11 | 269 | 77 | 335 | 3.12e-148 | 418 |
| Msa0480160 | MtrunA17_Chr3g0112141 | 73.438 | 256 | 68 | 0 | 20 | 275 | 17 | 272 | 8.55e-143 | 402 |
| Msa0480160 | MtrunA17_Chr4g0032141 | 64.591 | 257 | 91 | 0 | 16 | 272 | 52 | 308 | 3.36e-129 | 369 |
| Msa0480160 | MtrunA17_Chr7g0239481 | 58.175 | 263 | 106 | 1 | 8 | 266 | 3 | 265 | 3.25e-110 | 319 |
| Msa0480160 | MtrunA17_Chr4g0032181 | 62.338 | 231 | 87 | 0 | 36 | 266 | 17 | 247 | 2.71e-108 | 313 |
| Msa0480160 | MtrunA17_Chr7g0239511 | 58.846 | 260 | 103 | 1 | 11 | 266 | 7 | 266 | 1.19e-106 | 310 |
| Msa0480160 | MtrunA17_Chr7g0239491 | 56.489 | 262 | 111 | 1 | 7 | 265 | 2 | 263 | 2.35e-105 | 306 |
| Msa0480160 | MtrunA17_Chr7g0239501 | 57.692 | 260 | 106 | 1 | 11 | 266 | 7 | 266 | 7.52e-104 | 303 |
| Msa0480160 | MtrunA17_Chr7g0239451 | 55.985 | 259 | 110 | 1 | 11 | 265 | 7 | 265 | 7.72e-102 | 298 |
| Msa0480160 | MtrunA17_Chr7g0239461 | 48.837 | 258 | 80 | 4 | 11 | 265 | 7 | 215 | 1.32e-78 | 237 |
| Msa0480160 | MtrunA17_Chr3g0112321 | 63.636 | 99 | 20 | 2 | 152 | 247 | 2 | 87 | 3.28e-34 | 119 |
| Msa0480160 | MtrunA17_Chr4g0075531 | 32.787 | 244 | 159 | 4 | 22 | 264 | 9 | 248 | 1.89e-31 | 117 |
| Msa0480160 | MtrunA17_Chr3g0122901 | 32.099 | 243 | 160 | 4 | 26 | 266 | 81 | 320 | 6.99e-30 | 114 |
| Msa0480160 | MtrunA17_Chr7g0244061 | 32.847 | 274 | 148 | 7 | 20 | 265 | 29 | 294 | 7.13e-29 | 111 |
| Msa0480160 | MtrunA17_Chr7g0259521 | 30.350 | 257 | 165 | 7 | 20 | 267 | 6 | 257 | 2.51e-26 | 103 |
| Msa0480160 | MtrunA17_Chr7g0259531 | 31.154 | 260 | 161 | 8 | 16 | 264 | 7 | 259 | 6.93e-26 | 102 |
| Msa0480160 | MtrunA17_Chr4g0026001 | 32.000 | 250 | 163 | 6 | 20 | 266 | 14 | 259 | 4.08e-25 | 100 |
| Msa0480160 | MtrunA17_Chr4g0028911 | 27.586 | 261 | 176 | 9 | 19 | 269 | 10 | 267 | 6.63e-23 | 95.1 |
| Msa0480160 | MtrunA17_Chr4g0028921 | 28.462 | 260 | 173 | 9 | 20 | 269 | 11 | 267 | 2.00e-22 | 93.6 |
| Msa0480160 | MtrunA17_Chr4g0025971 | 29.200 | 250 | 170 | 6 | 20 | 266 | 14 | 259 | 6.87e-22 | 92.0 |
| Msa0480160 | MtrunA17_Chr3g0112161 | 43.363 | 113 | 34 | 2 | 128 | 239 | 1 | 84 | 2.05e-21 | 85.9 |
| Msa0480160 | MtrunA17_Chr7g0268591 | 28.731 | 268 | 173 | 8 | 11 | 267 | 26 | 286 | 2.24e-21 | 91.3 |
| Msa0480160 | MtrunA17_Chr4g0040371 | 29.344 | 259 | 164 | 8 | 20 | 265 | 19 | 271 | 6.79e-21 | 89.7 |
| Msa0480160 | MtrunA17_Chr7g0252031 | 31.047 | 277 | 165 | 9 | 7 | 265 | 19 | 287 | 7.23e-21 | 90.1 |
| Msa0480160 | MtrunA17_Chr8g0357481 | 29.545 | 264 | 155 | 8 | 20 | 264 | 14 | 265 | 2.84e-20 | 88.2 |
| Msa0480160 | MtrunA17_Chr4g0044131 | 28.400 | 250 | 169 | 7 | 20 | 263 | 8 | 253 | 6.80e-20 | 86.7 |
| Msa0480160 | MtrunA17_Chr4g0025981 | 27.668 | 253 | 166 | 7 | 22 | 266 | 43 | 286 | 8.02e-20 | 87.4 |
| Msa0480160 | MtrunA17_Chr3g0084871 | 31.136 | 273 | 169 | 11 | 6 | 265 | 4 | 270 | 1.71e-18 | 83.2 |
| Msa0480160 | MtrunA17_Chr4g0074511 | 28.794 | 257 | 171 | 6 | 19 | 266 | 39 | 292 | 1.92e-18 | 83.2 |
| Msa0480160 | MtrunA17_Chr1g0182511 | 29.344 | 259 | 158 | 9 | 20 | 263 | 14 | 262 | 2.31e-18 | 82.4 |
| Msa0480160 | MtrunA17_Chr4g0044111 | 29.478 | 268 | 165 | 12 | 20 | 275 | 13 | 268 | 7.57e-18 | 81.3 |
| Msa0480160 | MtrunA17_Chr7g0266981 | 28.731 | 268 | 167 | 12 | 20 | 275 | 13 | 268 | 3.62e-17 | 79.3 |
| Msa0480160 | MtrunA17_Chr6g0459301 | 28.736 | 261 | 174 | 8 | 12 | 264 | 6 | 262 | 4.34e-17 | 79.0 |
| Msa0480160 | MtrunA17_Chr0c30g0494101 | 29.183 | 257 | 166 | 8 | 20 | 266 | 40 | 290 | 7.38e-17 | 78.6 |
| Msa0480160 | MtrunA17_Chr7g0270441 | 28.295 | 258 | 174 | 8 | 17 | 267 | 3 | 256 | 6.75e-16 | 75.5 |
| Msa0480160 | MtrunA17_Chr6g0459261 | 28.854 | 253 | 168 | 8 | 20 | 264 | 25 | 273 | 1.81e-15 | 74.7 |
| Msa0480160 | MtrunA17_Chr7g0267001 | 25.806 | 248 | 160 | 6 | 20 | 263 | 8 | 235 | 4.72e-15 | 73.2 |
| Msa0480160 | MtrunA17_Chr2g0324021 | 28.794 | 257 | 173 | 9 | 17 | 267 | 3 | 255 | 1.35e-14 | 72.0 |
| Msa0480160 | MtrunA17_Chr7g0266891 | 28.358 | 268 | 168 | 12 | 20 | 275 | 7 | 262 | 1.56e-14 | 71.6 |
| Msa0480160 | MtrunA17_Chr6g0459331 | 28.854 | 253 | 168 | 8 | 20 | 264 | 13 | 261 | 1.69e-14 | 71.6 |
| Msa0480160 | MtrunA17_Chr7g0267011 | 28.497 | 193 | 129 | 6 | 15 | 204 | 5 | 191 | 5.52e-14 | 68.9 |
| Msa0480160 | MtrunA17_Chr6g0459271 | 29.249 | 253 | 167 | 8 | 20 | 264 | 13 | 261 | 1.85e-13 | 68.6 |
| Msa0480160 | MtrunA17_Chr8g0381191 | 28.972 | 214 | 141 | 6 | 22 | 228 | 47 | 256 | 2.56e-13 | 68.9 |
| Msa0480160 | MtrunA17_Chr8g0355281 | 26.087 | 184 | 129 | 4 | 20 | 197 | 69 | 251 | 2.61e-11 | 63.2 |
| Msa0480160 | MtrunA17_Chr7g0270451 | 27.099 | 262 | 181 | 8 | 17 | 272 | 3 | 260 | 2.62e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480160 | AT5G06060.1 | 65.637 | 259 | 89 | 0 | 16 | 274 | 5 | 263 | 1.74e-132 | 375 |
| Msa0480160 | AT2G29260.1 | 61.719 | 256 | 98 | 0 | 16 | 271 | 64 | 319 | 3.40e-120 | 347 |
| Msa0480160 | AT2G29290.2 | 62.403 | 258 | 95 | 1 | 16 | 271 | 3 | 260 | 3.60e-119 | 342 |
| Msa0480160 | AT1G07440.1 | 61.240 | 258 | 97 | 2 | 16 | 271 | 8 | 264 | 2.04e-118 | 340 |
| Msa0480160 | AT1G07450.1 | 62.598 | 254 | 94 | 1 | 16 | 269 | 4 | 256 | 7.10e-118 | 338 |
| Msa0480160 | AT2G29150.1 | 60.227 | 264 | 102 | 2 | 10 | 271 | 6 | 268 | 5.66e-116 | 334 |
| Msa0480160 | AT2G29360.1 | 60.385 | 260 | 103 | 0 | 10 | 269 | 6 | 265 | 6.17e-115 | 332 |
| Msa0480160 | AT2G29350.1 | 61.660 | 253 | 96 | 1 | 17 | 269 | 12 | 263 | 3.32e-113 | 327 |
| Msa0480160 | AT2G29340.2 | 57.308 | 260 | 109 | 1 | 16 | 273 | 3 | 262 | 1.28e-111 | 323 |
| Msa0480160 | AT2G29340.1 | 57.752 | 258 | 107 | 1 | 16 | 271 | 3 | 260 | 4.85e-111 | 323 |
| Msa0480160 | AT2G29370.1 | 58.846 | 260 | 107 | 0 | 10 | 269 | 6 | 265 | 1.18e-110 | 320 |
| Msa0480160 | AT2G29330.1 | 58.915 | 258 | 104 | 1 | 16 | 271 | 3 | 260 | 1.86e-110 | 320 |
| Msa0480160 | AT2G29300.1 | 58.301 | 259 | 105 | 2 | 16 | 271 | 3 | 261 | 2.69e-109 | 317 |
| Msa0480160 | AT2G29310.1 | 57.752 | 258 | 107 | 1 | 16 | 271 | 3 | 260 | 1.90e-108 | 315 |
| Msa0480160 | AT2G30670.1 | 59.055 | 254 | 104 | 0 | 16 | 269 | 3 | 256 | 6.46e-108 | 313 |
| Msa0480160 | AT2G29320.1 | 58.555 | 263 | 94 | 4 | 18 | 271 | 11 | 267 | 1.09e-107 | 313 |
| Msa0480160 | AT2G29290.1 | 60.924 | 238 | 91 | 1 | 36 | 271 | 6 | 243 | 6.22e-106 | 308 |
| Msa0480160 | AT2G29300.2 | 57.708 | 253 | 106 | 1 | 16 | 267 | 3 | 255 | 2.24e-105 | 308 |
| Msa0480160 | AT2G29350.3 | 60.889 | 225 | 87 | 1 | 45 | 269 | 2 | 225 | 8.41e-98 | 286 |
| Msa0480160 | AT2G29320.2 | 57.143 | 245 | 90 | 4 | 36 | 271 | 11 | 249 | 1.04e-96 | 285 |
| Msa0480160 | AT2G29310.2 | 56.303 | 238 | 102 | 1 | 36 | 271 | 21 | 258 | 3.18e-95 | 281 |
| Msa0480160 | AT2G29350.2 | 63.731 | 193 | 70 | 0 | 17 | 209 | 12 | 204 | 2.03e-88 | 263 |
| Msa0480160 | AT2G29340.3 | 56.701 | 194 | 84 | 0 | 16 | 209 | 3 | 196 | 3.29e-81 | 243 |
| Msa0480160 | AT2G29340.4 | 56.701 | 194 | 84 | 0 | 16 | 209 | 3 | 196 | 3.29e-81 | 243 |
| Msa0480160 | AT2G29310.3 | 58.247 | 194 | 81 | 0 | 16 | 209 | 3 | 196 | 2.61e-80 | 241 |
| Msa0480160 | AT2G29320.3 | 58.115 | 191 | 79 | 1 | 18 | 207 | 11 | 201 | 3.11e-78 | 236 |
| Msa0480160 | AT1G07440.2 | 60.494 | 162 | 64 | 0 | 16 | 177 | 8 | 169 | 2.28e-71 | 217 |
| Msa0480160 | AT2G29310.4 | 56.322 | 174 | 76 | 0 | 36 | 209 | 21 | 194 | 5.73e-67 | 207 |
| Msa0480160 | AT2G29170.1 | 64.444 | 90 | 32 | 0 | 17 | 106 | 13 | 102 | 9.95e-39 | 132 |
| Msa0480160 | AT5G18210.1 | 33.721 | 258 | 154 | 8 | 19 | 264 | 7 | 259 | 4.84e-31 | 116 |
| Msa0480160 | AT3G03980.1 | 32.472 | 271 | 162 | 8 | 9 | 263 | 3 | 268 | 2.08e-30 | 115 |
| Msa0480160 | AT4G05530.1 | 32.520 | 246 | 161 | 5 | 20 | 264 | 9 | 250 | 4.17e-30 | 114 |
| Msa0480160 | AT4G13180.1 | 32.707 | 266 | 165 | 7 | 10 | 266 | 3 | 263 | 1.97e-29 | 112 |
| Msa0480160 | AT1G24360.1 | 29.851 | 268 | 177 | 5 | 4 | 266 | 58 | 319 | 1.79e-27 | 108 |
| Msa0480160 | AT5G18210.2 | 33.750 | 240 | 142 | 8 | 19 | 246 | 7 | 241 | 1.06e-26 | 105 |
| Msa0480160 | AT3G04000.1 | 30.686 | 277 | 170 | 9 | 1 | 263 | 1 | 269 | 1.99e-23 | 96.7 |
| Msa0480160 | AT1G63380.4 | 29.344 | 259 | 171 | 8 | 20 | 268 | 19 | 275 | 2.13e-23 | 97.1 |
| Msa0480160 | AT1G63380.1 | 29.344 | 259 | 171 | 8 | 20 | 268 | 17 | 273 | 2.50e-23 | 96.7 |
| Msa0480160 | AT1G63380.3 | 29.344 | 259 | 171 | 8 | 20 | 268 | 15 | 271 | 2.62e-23 | 96.7 |
| Msa0480160 | AT1G63380.2 | 29.344 | 259 | 171 | 8 | 20 | 268 | 22 | 278 | 3.62e-23 | 96.3 |
| Msa0480160 | AT3G46170.1 | 28.016 | 257 | 176 | 6 | 20 | 268 | 26 | 281 | 2.29e-22 | 94.4 |
| Msa0480160 | AT1G54870.2 | 30.859 | 256 | 164 | 7 | 20 | 266 | 84 | 335 | 2.73e-22 | 94.7 |
| Msa0480160 | AT1G54870.1 | 30.859 | 256 | 164 | 7 | 20 | 266 | 82 | 333 | 3.33e-22 | 94.7 |
| Msa0480160 | AT1G62610.1 | 27.132 | 258 | 178 | 7 | 20 | 268 | 14 | 270 | 3.56e-22 | 93.6 |
| Msa0480160 | AT1G62610.2 | 27.132 | 258 | 178 | 7 | 20 | 268 | 13 | 269 | 3.68e-22 | 93.6 |
| Msa0480160 | AT1G62610.3 | 27.132 | 258 | 178 | 7 | 20 | 268 | 15 | 271 | 3.77e-22 | 93.6 |
| Msa0480160 | AT1G62610.4 | 27.132 | 258 | 178 | 7 | 20 | 268 | 19 | 275 | 4.24e-22 | 93.2 |
| Msa0480160 | AT3G55310.1 | 28.682 | 258 | 173 | 8 | 20 | 268 | 17 | 272 | 7.28e-22 | 92.8 |
| Msa0480160 | AT3G55290.2 | 28.736 | 261 | 169 | 9 | 20 | 268 | 17 | 272 | 1.34e-21 | 92.0 |
| Msa0480160 | AT3G55290.1 | 28.736 | 261 | 169 | 9 | 20 | 268 | 18 | 273 | 1.42e-21 | 92.0 |
| Msa0480160 | AT3G51680.1 | 28.571 | 266 | 168 | 7 | 20 | 265 | 32 | 295 | 3.15e-21 | 91.3 |
| Msa0480160 | AT3G05260.1 | 29.020 | 255 | 169 | 6 | 20 | 266 | 37 | 287 | 2.02e-20 | 89.0 |
| Msa0480160 | AT2G17845.1 | 26.515 | 264 | 176 | 9 | 20 | 269 | 47 | 306 | 2.43e-19 | 86.3 |
| Msa0480160 | AT3G26760.1 | 27.099 | 262 | 172 | 6 | 20 | 267 | 36 | 292 | 3.18e-19 | 85.9 |
| Msa0480160 | AT3G12800.1 | 26.482 | 253 | 174 | 6 | 22 | 264 | 12 | 262 | 4.02e-19 | 85.5 |
| Msa0480160 | AT1G52340.1 | 30.534 | 262 | 162 | 9 | 20 | 265 | 18 | 275 | 6.56e-17 | 79.0 |
| Msa0480160 | AT4G03140.1 | 26.172 | 256 | 175 | 7 | 20 | 265 | 78 | 329 | 9.21e-17 | 79.3 |
| Msa0480160 | AT3G26770.1 | 27.692 | 260 | 171 | 6 | 20 | 267 | 41 | 295 | 7.59e-16 | 76.3 |
| Msa0480160 | AT2G47120.1 | 26.255 | 259 | 177 | 9 | 20 | 272 | 6 | 256 | 1.39e-15 | 75.1 |
| Msa0480160 | AT2G47120.2 | 26.255 | 259 | 177 | 9 | 20 | 272 | 7 | 257 | 1.51e-15 | 75.1 |
| Msa0480160 | AT3G42960.1 | 27.969 | 261 | 156 | 8 | 25 | 265 | 13 | 261 | 8.69e-15 | 72.8 |
| Msa0480160 | AT2G47130.1 | 26.587 | 252 | 176 | 7 | 20 | 266 | 6 | 253 | 1.31e-14 | 72.4 |
| Msa0480160 | AT3G06060.1 | 28.125 | 192 | 129 | 3 | 25 | 212 | 42 | 228 | 8.12e-14 | 70.9 |
| Msa0480160 | AT3G06060.2 | 28.125 | 192 | 129 | 3 | 25 | 212 | 59 | 245 | 8.21e-14 | 70.9 |
| Msa0480160 | AT5G04900.1 | 28.780 | 205 | 136 | 7 | 3 | 201 | 61 | 261 | 3.96e-13 | 68.9 |
| Msa0480160 | AT3G47350.2 | 28.037 | 214 | 143 | 6 | 19 | 227 | 43 | 250 | 9.12e-13 | 67.8 |
| Msa0480160 | AT3G47350.1 | 28.037 | 214 | 143 | 6 | 19 | 227 | 43 | 250 | 1.04e-12 | 67.4 |
| Msa0480160 | AT5G19200.1 | 26.471 | 204 | 141 | 3 | 26 | 225 | 41 | 239 | 4.00e-12 | 65.9 |
| Msa0480160 | AT3G03330.1 | 26.131 | 199 | 138 | 4 | 11 | 202 | 32 | 228 | 9.11e-12 | 64.7 |
| Msa0480160 | AT1G24470.1 | 27.228 | 202 | 136 | 6 | 16 | 210 | 46 | 243 | 1.56e-11 | 63.9 |
| Msa0480160 | AT1G49670.1 | 29.126 | 206 | 129 | 8 | 22 | 213 | 6 | 208 | 3.01e-11 | 63.9 |
| Msa0480160 | AT1G49670.2 | 29.126 | 206 | 129 | 8 | 22 | 213 | 6 | 208 | 3.44e-11 | 63.9 |
| Msa0480160 | AT5G10050.1 | 29.508 | 183 | 122 | 4 | 26 | 207 | 11 | 187 | 7.54e-11 | 61.6 |
Find 66 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCGGTGGCACTCGTGGAAT+CGG | 0.347184 | 3_3:+85344706 | Msa0480160:CDS |
| TGGAAGCCACTTGTTGAATA+AGG | 0.356666 | 3_3:-85345219 | None:intergenic |
| TATCCTCTTCTAAAAGAATC+TGG | 0.356990 | 3_3:+85346169 | Msa0480160:CDS |
| ATGTTCTACAAGTGGGGTTC+TGG | 0.364231 | 3_3:-85346459 | None:intergenic |
| CTTATGCCCACTTGAAATAC+TGG | 0.379196 | 3_3:+85347241 | Msa0480160:three_prime_UTR |
| ACCCGAAGAGGTCTCCTCTT+TGG | 0.381912 | 3_3:+85347091 | Msa0480160:CDS |
| AGAGAGTGAATAATACAAAA+TGG | 0.387046 | 3_3:+85344606 | Msa0480160:exon |
| GTGTTCATTTCATCTGTTGC+AGG | 0.395569 | 3_3:+85346205 | Msa0480160:CDS |
| GGACAAGTTATTTGTGTTGA+TGG | 0.402356 | 3_3:+85347152 | Msa0480160:CDS |
| ATCTCATGTAATTCTCATGC+TGG | 0.418009 | 3_3:-85347201 | None:intergenic |
| TAAAGGTCTAAATATATGTT+TGG | 0.427889 | 3_3:+85347344 | Msa0480160:three_prime_UTR |
| CTTCTAAAAGAATCTGGAAA+TGG | 0.429287 | 3_3:+85346175 | Msa0480160:CDS |
| GTTGCAGGTGTGGTTAGCTT+AGG | 0.435339 | 3_3:+85346220 | Msa0480160:CDS |
| CACCAAAGAGGAGACCTCTT+CGG | 0.436189 | 3_3:-85347093 | None:intergenic |
| TCAATAAGTGCTTACAAGAA+TGG | 0.438266 | 3_3:+85345131 | Msa0480160:CDS |
| GATATGCAAGTTGGCACAAA+TGG | 0.442938 | 3_3:-85346150 | None:intergenic |
| CAAGTGGCTTCCACTTTCAA+TGG | 0.445054 | 3_3:+85345229 | Msa0480160:CDS |
| GGTTCGGCAATGCGCTTAAG+AGG | 0.448812 | 3_3:-85347071 | None:intergenic |
| TGAATAAGGCTCTCTCTTTG+TGG | 0.452558 | 3_3:-85345205 | None:intergenic |
| AGAGGAGACCTCTTCGGGTT+CGG | 0.459507 | 3_3:-85347087 | None:intergenic |
| GTGAATGATCTAGTTGCATT+TGG | 0.466081 | 3_3:+85345070 | Msa0480160:CDS |
| GGAATGACAGCTCTTGTAAC+CGG | 0.471184 | 3_3:+85344688 | Msa0480160:CDS |
| TGCAACTAGATCATTCACTA+TGG | 0.473158 | 3_3:-85345065 | None:intergenic |
| ACCAAAGAGGAGACCTCTTC+GGG | 0.477426 | 3_3:-85347092 | None:intergenic |
| TCAGCAGTGTACTCAATGGT+TGG | 0.489827 | 3_3:-85346085 | None:intergenic |
| ATTTCAAAATCAAAAGTTTG+TGG | 0.490723 | 3_3:+85347028 | Msa0480160:CDS |
| GTTGTCTATTGCCCATTCAC+AGG | 0.493489 | 3_3:-85346405 | None:intergenic |
| CTACTGTACACACTTGTTCA+AGG | 0.495979 | 3_3:+85345095 | Msa0480160:CDS |
| AATGGGCAATAGACAACATA+AGG | 0.496335 | 3_3:+85346411 | Msa0480160:CDS |
| GGTGTGGTTAGCTTAGGTAC+TGG | 0.499150 | 3_3:+85346226 | Msa0480160:CDS |
| TTCTTCAGCAGTGTACTCAA+TGG | 0.499815 | 3_3:-85346089 | None:intergenic |
| GACAAGTTATTTGTGTTGAT+GGG | 0.502183 | 3_3:+85347153 | Msa0480160:CDS |
| CCGGTGGCACTCGTGGAATC+GGG | 0.504977 | 3_3:+85344707 | Msa0480160:CDS |
| GTTGAGCTTGCCATTGAAAG+TGG | 0.515168 | 3_3:-85345239 | None:intergenic |
| CATTTCATCTGTTGCAGGTG+TGG | 0.515366 | 3_3:+85346210 | Msa0480160:CDS |
| CTTGTAACCGGTGGCACTCG+TGG | 0.521899 | 3_3:+85344700 | Msa0480160:CDS |
| CCCGATTCCACGAGTGCCAC+CGG | 0.529955 | 3_3:-85344707 | None:intergenic |
| GGACAGAGATGGTCTCTCAC+TGG | 0.538298 | 3_3:+85344667 | Msa0480160:CDS |
| TCTGTCTACGCAGCAAGTAA+AGG | 0.541483 | 3_3:+85346250 | Msa0480160:CDS |
| CCTGCTGCATCTTACATCAC+TGG | 0.543937 | 3_3:+85347131 | Msa0480160:CDS |
| AAATTACATGTTCTACAAGT+GGG | 0.546415 | 3_3:-85346466 | None:intergenic |
| TTAGAAGAGGATATGCAAGT+TGG | 0.555015 | 3_3:-85346159 | None:intergenic |
| TTACAAGAATGGCAAAGTAA+AGG | 0.555353 | 3_3:+85345142 | Msa0480160:CDS |
| AGTGGGGTTCTGGTTGCCCA+TGG | 0.559899 | 3_3:-85346449 | None:intergenic |
| GAGCAATTGTGTTGTACCAT+GGG | 0.560513 | 3_3:+85346433 | Msa0480160:CDS |
| GAAACACATAGCAGCAGAGG+TGG | 0.561832 | 3_3:+85344646 | Msa0480160:CDS |
| AGAGAGCCTTATTCAACAAG+TGG | 0.562362 | 3_3:+85345213 | Msa0480160:CDS |
| AAAATTACATGTTCTACAAG+TGG | 0.573526 | 3_3:-85346467 | None:intergenic |
| TCTCATGTAATTCTCATGCT+GGG | 0.575912 | 3_3:-85347200 | None:intergenic |
| GGAGCAATTGTGTTGTACCA+TGG | 0.576420 | 3_3:+85346432 | Msa0480160:CDS |
| GCGCATTGCCGAACCCGAAG+AGG | 0.578494 | 3_3:+85347079 | Msa0480160:CDS |
| GCAGCAGAGGTGGACAGAGA+TGG | 0.586161 | 3_3:+85344656 | Msa0480160:CDS |
| GTAGAAACACATAGCAGCAG+AGG | 0.588040 | 3_3:+85344643 | Msa0480160:CDS |
| CGGTCTGTGATGTAAGCTCT+CGG | 0.593629 | 3_3:+85345182 | Msa0480160:CDS |
| CAAGTTATTTGTGTTGATGG+GGG | 0.602087 | 3_3:+85347155 | Msa0480160:CDS |
| ATGCTTTAGGTAAATAACGT+GGG | 0.610168 | 3_3:+85346046 | Msa0480160:intron |
| CCAGTGATGTAAGATGCAGC+AGG | 0.631919 | 3_3:-85347131 | None:intergenic |
| ACAAGTTATTTGTGTTGATG+GGG | 0.632558 | 3_3:+85347154 | Msa0480160:CDS |
| AAGATGCAGCAGGTAAGCAA+AGG | 0.634488 | 3_3:-85347121 | None:intergenic |
| TATGCTTTAGGTAAATAACG+TGG | 0.635045 | 3_3:+85346045 | Msa0480160:intron |
| AATTACATGTTCTACAAGTG+GGG | 0.636533 | 3_3:-85346465 | None:intergenic |
| GCAAAGGAAAGTCACCAAAG+AGG | 0.638884 | 3_3:-85347105 | None:intergenic |
| CTAGCCACCAGTATTTCAAG+TGG | 0.656662 | 3_3:-85347248 | None:intergenic |
| ATGACAGCTCTTGTAACCGG+TGG | 0.671270 | 3_3:+85344691 | Msa0480160:CDS |
| ATGCCCACTTGAAATACTGG+TGG | 0.683160 | 3_3:+85347244 | Msa0480160:three_prime_UTR |
| TAGCCACCAGTATTTCAAGT+GGG | 0.692051 | 3_3:-85347247 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTAATGATTTATATGTT+TGG | - | chr3_3:85345287-85345306 | None:intergenic | 10.0% |
| !! | ACTCTTTATAATTAAGTTAA+TGG | - | chr3_3:85345449-85345468 | None:intergenic | 15.0% |
| !! | TAAAATGGTAATTATTTGTA+AGG | - | chr3_3:85345702-85345721 | None:intergenic | 15.0% |
| !!! | CAAAGTAATTCATTAATTTT+TGG | - | chr3_3:85345997-85346016 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAAGTAAGTTA+GGG | - | chr3_3:85346499-85346518 | None:intergenic | 15.0% |
| !! | TCAAAAAAAAAAAGTAAGTT+AGG | - | chr3_3:85346500-85346519 | None:intergenic | 15.0% |
| !!! | AACTTACTTTTTTTTTTTGA+AGG | + | chr3_3:85346500-85346519 | Msa0480160:intron | 15.0% |
| !! | TATTATGTATCCATATTTAT+TGG | - | chr3_3:85346563-85346582 | None:intergenic | 15.0% |
| !!! | TATTTACATTTTTTCATTCA+TGG | + | chr3_3:85346867-85346886 | Msa0480160:intron | 15.0% |
| !! | ATTGTTCTTACAAAAAATAA+AGG | + | chr3_3:85347327-85347346 | Msa0480160:three_prime_UTR | 15.0% |
| !! | AATAATGAAATAAGAGAGAA+GGG | - | chr3_3:85344745-85344764 | None:intergenic | 20.0% |
| !! | AAATAATGAAATAAGAGAGA+AGG | - | chr3_3:85344746-85344765 | None:intergenic | 20.0% |
| !! | CAAAATAAAATAATGATGCA+GGG | - | chr3_3:85344784-85344803 | None:intergenic | 20.0% |
| !! | TCAAAATAAAATAATGATGC+AGG | - | chr3_3:85344785-85344804 | None:intergenic | 20.0% |
| !!! | AAAAGATAAGGAAGTATTTT+TGG | - | chr3_3:85344813-85344832 | None:intergenic | 20.0% |
| !!! | TTGGATAATTTTGAAGATAA+AGG | - | chr3_3:85345624-85345643 | None:intergenic | 20.0% |
| !! | TAATCAGCTTACAAAAAATT+TGG | + | chr3_3:85346382-85346401 | Msa0480160:CDS | 20.0% |
| !! | AAAATACACATAAAACTCAA+AGG | - | chr3_3:85346639-85346658 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTCAAACTAACAA+TGG | + | chr3_3:85346953-85346972 | Msa0480160:intron | 20.0% |
| !! | ATTTCAAAATCAAAAGTTTG+TGG | + | chr3_3:85347028-85347047 | Msa0480160:CDS | 20.0% |
| !! | AAAACAAAGAGAGAAAAATA+AGG | - | chr3_3:85347295-85347314 | None:intergenic | 20.0% |
| !! | TAAAGGTCTAAATATATGTT+TGG | + | chr3_3:85347344-85347363 | Msa0480160:three_prime_UTR | 20.0% |
| ! | AGAGAGTGAATAATACAAAA+TGG | + | chr3_3:85344606-85344625 | Msa0480160:exon | 25.0% |
| ! | ATAATGAAATAAGAGAGAAG+GGG | - | chr3_3:85344744-85344763 | None:intergenic | 25.0% |
| !!! | CGTTTAAATGTTTTTACACA+CGG | + | chr3_3:85344858-85344877 | Msa0480160:intron | 25.0% |
| ! | ATTATAAAGAGTGATGACAA+CGG | + | chr3_3:85345457-85345476 | Msa0480160:intron | 25.0% |
| ! | AGATAACAGATGAAGTAAAA+TGG | - | chr3_3:85345717-85345736 | None:intergenic | 25.0% |
| ! | TCTTAAGCAGATACATAAAA+AGG | - | chr3_3:85345750-85345769 | None:intergenic | 25.0% |
| !! | GTAAGTACATTGTTTAAAGT+TGG | + | chr3_3:85345913-85345932 | Msa0480160:intron | 25.0% |
| ! | TTGCAAATATGTATGATTCA+TGG | - | chr3_3:85346020-85346039 | None:intergenic | 25.0% |
| ! | TTTGCAAGAATTTATGCTTT+AGG | + | chr3_3:85346033-85346052 | Msa0480160:intron | 25.0% |
| ! | AAATTACATGTTCTACAAGT+GGG | - | chr3_3:85346469-85346488 | None:intergenic | 25.0% |
| ! | AAAATTACATGTTCTACAAG+TGG | - | chr3_3:85346470-85346489 | None:intergenic | 25.0% |
| ! | TTGAAGGAAACTTACTTATT+TGG | + | chr3_3:85346516-85346535 | Msa0480160:intron | 25.0% |
| !!! | CATATTTATTGGTTCTATGT+GGG | - | chr3_3:85346552-85346571 | None:intergenic | 25.0% |
| ! | TCTGCTTATGATTGATTATA+TGG | + | chr3_3:85346778-85346797 | Msa0480160:intron | 25.0% |
| AAACGACGCTAATCTTAAAA+CGG | - | chr3_3:85344843-85344862 | None:intergenic | 30.0% | |
| ACCAACACTACAACATAATT+GGG | + | chr3_3:85344881-85344900 | Msa0480160:intron | 30.0% | |
| TAGAGAATGTGTCAAATGAA+TGG | - | chr3_3:85345039-85345058 | None:intergenic | 30.0% | |
| ATTCATTTGACACATTCTCT+AGG | + | chr3_3:85345038-85345057 | Msa0480160:intron | 30.0% | |
| TCAATAAGTGCTTACAAGAA+TGG | + | chr3_3:85345131-85345150 | Msa0480160:CDS | 30.0% | |
| TTACAAGAATGGCAAAGTAA+AGG | + | chr3_3:85345142-85345161 | Msa0480160:CDS | 30.0% | |
| ! | ATGGCAAAGTAAAGGATTTT+CGG | + | chr3_3:85345150-85345169 | Msa0480160:CDS | 30.0% |
| ! | ATTGTTGACTGTTCTATTCA+TGG | + | chr3_3:85345317-85345336 | Msa0480160:intron | 30.0% |
| CTATTGGACTAAGTTTGAAT+TGG | + | chr3_3:85345354-85345373 | Msa0480160:intron | 30.0% | |
| !! | CATAGGTTTGTTGATAGTAA+AGG | + | chr3_3:85345377-85345396 | Msa0480160:intron | 30.0% |
| !! | CAAGTTTGTTATGGACTTAT+GGG | - | chr3_3:85345523-85345542 | None:intergenic | 30.0% |
| !! | TCAAGTTTGTTATGGACTTA+TGG | - | chr3_3:85345524-85345543 | None:intergenic | 30.0% |
| !!! | GGTGTTATCTTTTTTCAATG+TGG | - | chr3_3:85345575-85345594 | None:intergenic | 30.0% |
| ACCTTGAGAGAGTTTATAAA+CGG | + | chr3_3:85345592-85345611 | Msa0480160:intron | 30.0% | |
| !! | TCACTATTTGACTTGATGTT+TGG | - | chr3_3:85345643-85345662 | None:intergenic | 30.0% |
| ! | TTGATCAATGTTTAGAGTTG+AGG | + | chr3_3:85345793-85345812 | Msa0480160:intron | 30.0% |
| TGCTTCTTGAATTCATCATT+TGG | + | chr3_3:85345848-85345867 | Msa0480160:intron | 30.0% | |
| ! | ACTAGACATATCAAAGGTTT+TGG | - | chr3_3:85345895-85345914 | None:intergenic | 30.0% |
| GTACTTACTAGACATATCAA+AGG | - | chr3_3:85345901-85345920 | None:intergenic | 30.0% | |
| ! | TATGCTTTAGGTAAATAACG+TGG | + | chr3_3:85346045-85346064 | Msa0480160:intron | 30.0% |
| ! | ATGCTTTAGGTAAATAACGT+GGG | + | chr3_3:85346046-85346065 | Msa0480160:intron | 30.0% |
| ! | TATCCTCTTCTAAAAGAATC+TGG | + | chr3_3:85346169-85346188 | Msa0480160:CDS | 30.0% |
| !! | TTTCCAGATTCTTTTAGAAG+AGG | - | chr3_3:85346175-85346194 | None:intergenic | 30.0% |
| ! | CTTCTAAAAGAATCTGGAAA+TGG | + | chr3_3:85346175-85346194 | Msa0480160:CDS | 30.0% |
| AATTGCAGCTGAAAATTCAA+TGG | - | chr3_3:85346363-85346382 | None:intergenic | 30.0% | |
| AAAAAATTTGGCCTGTGAAT+GGG | + | chr3_3:85346394-85346413 | Msa0480160:CDS | 30.0% | |
| AATTACATGTTCTACAAGTG+GGG | - | chr3_3:85346468-85346487 | None:intergenic | 30.0% | |
| !! | CCATATTTATTGGTTCTATG+TGG | - | chr3_3:85346553-85346572 | None:intergenic | 30.0% |
| CCACATAGAACCAATAAATA+TGG | + | chr3_3:85346550-85346569 | Msa0480160:intron | 30.0% | |
| ! | ATTCCTATCTTCAAGTTCAA+TGG | + | chr3_3:85346902-85346921 | Msa0480160:intron | 30.0% |
| ! | GACAAGTTATTTGTGTTGAT+GGG | + | chr3_3:85347153-85347172 | Msa0480160:CDS | 30.0% |
| ! | ACAAGTTATTTGTGTTGATG+GGG | + | chr3_3:85347154-85347173 | Msa0480160:CDS | 30.0% |
| GACCAACACTACAACATAAT+TGG | + | chr3_3:85344880-85344899 | Msa0480160:intron | 35.0% | |
| TCCCAATTATGTTGTAGTGT+TGG | - | chr3_3:85344885-85344904 | None:intergenic | 35.0% | |
| AGTAGAGCTCTTTAGTAACA+CGG | - | chr3_3:85344941-85344960 | None:intergenic | 35.0% | |
| GAATGTGTCAAATGAATGGA+TGG | - | chr3_3:85345035-85345054 | None:intergenic | 35.0% | |
| TGCAACTAGATCATTCACTA+TGG | - | chr3_3:85345068-85345087 | None:intergenic | 35.0% | |
| GTGAATGATCTAGTTGCATT+TGG | + | chr3_3:85345070-85345089 | Msa0480160:CDS | 35.0% | |
| ! | AGTAAAGGATTTTCGGTTAC+TGG | + | chr3_3:85345157-85345176 | Msa0480160:CDS | 35.0% |
| GGATCTATGCAGAAAACTAT+TGG | + | chr3_3:85345338-85345357 | Msa0480160:intron | 35.0% | |
| GACTAAGTTTGAATTGGCAT+AGG | + | chr3_3:85345360-85345379 | Msa0480160:intron | 35.0% | |
| !! | GCAACAACTCAAGTTTGTTA+TGG | - | chr3_3:85345532-85345551 | None:intergenic | 35.0% |
| ! | CAAACTTGAGTTGTTGCTAT+TGG | + | chr3_3:85345535-85345554 | Msa0480160:intron | 35.0% |
| ACCGTTTATAAACTCTCTCA+AGG | - | chr3_3:85345596-85345615 | None:intergenic | 35.0% | |
| TTCAAGAAGCAACAAAAACC+AGG | - | chr3_3:85345839-85345858 | None:intergenic | 35.0% | |
| TTAGAAGAGGATATGCAAGT+TGG | - | chr3_3:85346162-85346181 | None:intergenic | 35.0% | |
| CAAAAAATTTGGCCTGTGAA+TGG | + | chr3_3:85346393-85346412 | Msa0480160:CDS | 35.0% | |
| AATGGGCAATAGACAACATA+AGG | + | chr3_3:85346411-85346430 | Msa0480160:CDS | 35.0% | |
| TCATAAGCAGACATTACAGA+TGG | - | chr3_3:85346769-85346788 | None:intergenic | 35.0% | |
| !! | TGGACTAGCAGTAAATTGTT+AGG | + | chr3_3:85346798-85346817 | Msa0480160:intron | 35.0% |
| TGTCCATTGAACTTGAAGAT+AGG | - | chr3_3:85346908-85346927 | None:intergenic | 35.0% | |
| GGACAAGTTATTTGTGTTGA+TGG | + | chr3_3:85347152-85347171 | Msa0480160:CDS | 35.0% | |
| ! | CAAGTTATTTGTGTTGATGG+GGG | + | chr3_3:85347155-85347174 | Msa0480160:CDS | 35.0% |
| TCTCATGTAATTCTCATGCT+GGG | - | chr3_3:85347203-85347222 | None:intergenic | 35.0% | |
| ATCTCATGTAATTCTCATGC+TGG | - | chr3_3:85347204-85347223 | None:intergenic | 35.0% | |
| AACGGAGGGAGTAAAAGATA+AGG | - | chr3_3:85344825-85344844 | None:intergenic | 40.0% | |
| GACGCTAATCTTAAAACGGA+GGG | - | chr3_3:85344839-85344858 | None:intergenic | 40.0% | |
| CTACTGTACACACTTGTTCA+AGG | + | chr3_3:85345095-85345114 | Msa0480160:CDS | 40.0% | |
| ! | AGGATTTTCGGTTACTGGAT+CGG | + | chr3_3:85345162-85345181 | Msa0480160:CDS | 40.0% |
| TGAATAAGGCTCTCTCTTTG+TGG | - | chr3_3:85345208-85345227 | None:intergenic | 40.0% | |
| !! | AGAGAGCCTTATTCAACAAG+TGG | + | chr3_3:85345213-85345232 | Msa0480160:CDS | 40.0% |
| ! | TGGAAGCCACTTGTTGAATA+AGG | - | chr3_3:85345222-85345241 | None:intergenic | 40.0% |
| AACAACAAACTGTTCCTTCC+TGG | + | chr3_3:85345818-85345837 | Msa0480160:intron | 40.0% | |
| AGAAGCAACAAAAACCAGGA+AGG | - | chr3_3:85345835-85345854 | None:intergenic | 40.0% | |
| TTCTTCAGCAGTGTACTCAA+TGG | - | chr3_3:85346092-85346111 | None:intergenic | 40.0% | |
| ! | GATATGCAAGTTGGCACAAA+TGG | - | chr3_3:85346153-85346172 | None:intergenic | 40.0% |
| GTGTTCATTTCATCTGTTGC+AGG | + | chr3_3:85346205-85346224 | Msa0480160:CDS | 40.0% | |
| GAGCAATTGTGTTGTACCAT+GGG | + | chr3_3:85346433-85346452 | Msa0480160:CDS | 40.0% | |
| CTTATGCCCACTTGAAATAC+TGG | + | chr3_3:85347241-85347260 | Msa0480160:three_prime_UTR | 40.0% | |
| ! | TAGCCACCAGTATTTCAAGT+GGG | - | chr3_3:85347250-85347269 | None:intergenic | 40.0% |
| GTAGAAACACATAGCAGCAG+AGG | + | chr3_3:85344643-85344662 | Msa0480160:CDS | 45.0% | |
| GGAATGACAGCTCTTGTAAC+CGG | + | chr3_3:85344688-85344707 | Msa0480160:CDS | 45.0% | |
| CGACGCTAATCTTAAAACGG+AGG | - | chr3_3:85344840-85344859 | None:intergenic | 45.0% | |
| CAAGTGGCTTCCACTTTCAA+TGG | + | chr3_3:85345229-85345248 | Msa0480160:CDS | 45.0% | |
| GTTGAGCTTGCCATTGAAAG+TGG | - | chr3_3:85345242-85345261 | None:intergenic | 45.0% | |
| GAGTGATGACAACGGTAAAG+TGG | + | chr3_3:85345465-85345484 | Msa0480160:intron | 45.0% | |
| TCAGCAGTGTACTCAATGGT+TGG | - | chr3_3:85346088-85346107 | None:intergenic | 45.0% | |
| CATTTCATCTGTTGCAGGTG+TGG | + | chr3_3:85346210-85346229 | Msa0480160:CDS | 45.0% | |
| TCTGTCTACGCAGCAAGTAA+AGG | + | chr3_3:85346250-85346269 | Msa0480160:CDS | 45.0% | |
| GTTGTCTATTGCCCATTCAC+AGG | - | chr3_3:85346408-85346427 | None:intergenic | 45.0% | |
| GGAGCAATTGTGTTGTACCA+TGG | + | chr3_3:85346432-85346451 | Msa0480160:CDS | 45.0% | |
| ATGTTCTACAAGTGGGGTTC+TGG | - | chr3_3:85346462-85346481 | None:intergenic | 45.0% | |
| GCAAAGGAAAGTCACCAAAG+AGG | - | chr3_3:85347108-85347127 | None:intergenic | 45.0% | |
| AAGATGCAGCAGGTAAGCAA+AGG | - | chr3_3:85347124-85347143 | None:intergenic | 45.0% | |
| GATGGGGGATTAACTGTGTT+TGG | + | chr3_3:85347170-85347189 | Msa0480160:CDS | 45.0% | |
| ATGCCCACTTGAAATACTGG+TGG | + | chr3_3:85347244-85347263 | Msa0480160:three_prime_UTR | 45.0% | |
| CTAGCCACCAGTATTTCAAG+TGG | - | chr3_3:85347251-85347270 | None:intergenic | 45.0% | |
| !! | CAAAAATTAAAAAAAAATAT+TGG | - | chr3_3:85347003-85347022 | None:intergenic | 5.0% |
| GAAACACATAGCAGCAGAGG+TGG | + | chr3_3:85344646-85344665 | Msa0480160:CDS | 50.0% | |
| ATGACAGCTCTTGTAACCGG+TGG | + | chr3_3:85344691-85344710 | Msa0480160:CDS | 50.0% | |
| CGGTCTGTGATGTAAGCTCT+CGG | + | chr3_3:85345182-85345201 | Msa0480160:CDS | 50.0% | |
| !! | GTTGCAGGTGTGGTTAGCTT+AGG | + | chr3_3:85346220-85346239 | Msa0480160:CDS | 50.0% |
| !! | GGTGTGGTTAGCTTAGGTAC+TGG | + | chr3_3:85346226-85346245 | Msa0480160:CDS | 50.0% |
| ACCAAAGAGGAGACCTCTTC+GGG | - | chr3_3:85347095-85347114 | None:intergenic | 50.0% | |
| CACCAAAGAGGAGACCTCTT+CGG | - | chr3_3:85347096-85347115 | None:intergenic | 50.0% | |
| CCAGTGATGTAAGATGCAGC+AGG | - | chr3_3:85347134-85347153 | None:intergenic | 50.0% | |
| CCTGCTGCATCTTACATCAC+TGG | + | chr3_3:85347131-85347150 | Msa0480160:CDS | 50.0% | |
| GGACAGAGATGGTCTCTCAC+TGG | + | chr3_3:85344667-85344686 | Msa0480160:CDS | 55.0% | |
| GGTTCGGCAATGCGCTTAAG+AGG | - | chr3_3:85347074-85347093 | None:intergenic | 55.0% | |
| ! | AGAGGAGACCTCTTCGGGTT+CGG | - | chr3_3:85347090-85347109 | None:intergenic | 55.0% |
| ACCCGAAGAGGTCTCCTCTT+TGG | + | chr3_3:85347091-85347110 | Msa0480160:CDS | 55.0% | |
| GCAGCAGAGGTGGACAGAGA+TGG | + | chr3_3:85344656-85344675 | Msa0480160:CDS | 60.0% | |
| CTTGTAACCGGTGGCACTCG+TGG | + | chr3_3:85344700-85344719 | Msa0480160:CDS | 60.0% | |
| ACCGGTGGCACTCGTGGAAT+CGG | + | chr3_3:85344706-85344725 | Msa0480160:CDS | 60.0% | |
| ! | AGTGGGGTTCTGGTTGCCCA+TGG | - | chr3_3:85346452-85346471 | None:intergenic | 60.0% |
| CCCGATTCCACGAGTGCCAC+CGG | - | chr3_3:85344710-85344729 | None:intergenic | 65.0% | |
| CCGGTGGCACTCGTGGAATC+GGG | + | chr3_3:85344707-85344726 | Msa0480160:CDS | 65.0% | |
| GCGCATTGCCGAACCCGAAG+AGG | + | chr3_3:85347079-85347098 | Msa0480160:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85344564 | 85347369 | 85344564 | ID=Msa0480160;Name=Msa0480160 |
| chr3_3 | mRNA | 85344564 | 85347369 | 85344564 | ID=Msa0480160-mRNA-1;Parent=Msa0480160;Name=Msa0480160-mRNA-1;_AED=0.12;_eAED=0.12;_QI=61|1|1|1|1|1|5|149|276 |
| chr3_3 | exon | 85344564 | 85344728 | 85344564 | ID=Msa0480160-mRNA-1:exon:24505;Parent=Msa0480160-mRNA-1 |
| chr3_3 | exon | 85345060 | 85345267 | 85345060 | ID=Msa0480160-mRNA-1:exon:24506;Parent=Msa0480160-mRNA-1 |
| chr3_3 | exon | 85346055 | 85346271 | 85346055 | ID=Msa0480160-mRNA-1:exon:24507;Parent=Msa0480160-mRNA-1 |
| chr3_3 | exon | 85346375 | 85346481 | 85346375 | ID=Msa0480160-mRNA-1:exon:24508;Parent=Msa0480160-mRNA-1 |
| chr3_3 | exon | 85347026 | 85347369 | 85347026 | ID=Msa0480160-mRNA-1:exon:24509;Parent=Msa0480160-mRNA-1 |
| chr3_3 | five_prime_UTR | 85344564 | 85344624 | 85344564 | ID=Msa0480160-mRNA-1:five_prime_utr;Parent=Msa0480160-mRNA-1 |
| chr3_3 | CDS | 85344625 | 85344728 | 85344625 | ID=Msa0480160-mRNA-1:cds;Parent=Msa0480160-mRNA-1 |
| chr3_3 | CDS | 85345060 | 85345267 | 85345060 | ID=Msa0480160-mRNA-1:cds;Parent=Msa0480160-mRNA-1 |
| chr3_3 | CDS | 85346055 | 85346271 | 85346055 | ID=Msa0480160-mRNA-1:cds;Parent=Msa0480160-mRNA-1 |
| chr3_3 | CDS | 85346375 | 85346481 | 85346375 | ID=Msa0480160-mRNA-1:cds;Parent=Msa0480160-mRNA-1 |
| chr3_3 | CDS | 85347026 | 85347220 | 85347026 | ID=Msa0480160-mRNA-1:cds;Parent=Msa0480160-mRNA-1 |
| chr3_3 | three_prime_UTR | 85347221 | 85347369 | 85347221 | ID=Msa0480160-mRNA-1:three_prime_utr;Parent=Msa0480160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
