Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966120 | XP_003620949.2 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 1.61e-111 | 323 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966120 | sp|Q8S8N6|PLA2A_ARATH | 65.563 | 151 | 45 | 1 | 7 | 157 | 5 | 148 | 1.98e-70 | 212 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0021290 | Msa0966120 | 0.803240 | 3.830644e-49 | -8.615850e-47 |
| Msa0021320 | Msa0966120 | 0.812495 | 4.118740e-51 | -8.615850e-47 |
| Msa0032130 | Msa0966120 | 0.816449 | 5.499820e-52 | -8.615850e-47 |
| Msa0032390 | Msa0966120 | 0.820017 | 8.562966e-53 | -8.615850e-47 |
| Msa0036810 | Msa0966120 | 0.816839 | 4.497162e-52 | -8.615850e-47 |
| Msa0045620 | Msa0966120 | 0.860467 | 2.024033e-63 | -8.615850e-47 |
| Msa0045810 | Msa0966120 | 0.810224 | 1.281635e-50 | -8.615850e-47 |
| Msa0063190 | Msa0966120 | 0.806676 | 7.326459e-50 | -8.615850e-47 |
| Msa0073270 | Msa0966120 | 0.822244 | 2.627004e-53 | -8.615850e-47 |
| Msa0080370 | Msa0966120 | 0.818720 | 1.691628e-52 | -8.615850e-47 |
| Msa0089540 | Msa0966120 | 0.819337 | 1.224443e-52 | -8.615850e-47 |
| Msa0100600 | Msa0966120 | 0.819700 | 1.011960e-52 | -8.615850e-47 |
| Msa0100890 | Msa0966120 | 0.814907 | 1.212927e-51 | -8.615850e-47 |
| Msa0108630 | Msa0966120 | 0.826832 | 2.184767e-54 | -8.615850e-47 |
| Msa0605520 | Msa0966120 | 0.826664 | 2.396789e-54 | -8.615850e-47 |
| Msa0623310 | Msa0966120 | 0.857059 | 2.112168e-62 | -8.615850e-47 |
| Msa0626980 | Msa0966120 | 0.813603 | 2.354325e-51 | -8.615850e-47 |
| Msa0627360 | Msa0966120 | 0.808131 | 3.600398e-50 | -8.615850e-47 |
| Msa0630440 | Msa0966120 | 0.803865 | 2.842605e-49 | -8.615850e-47 |
| Msa0658120 | Msa0966120 | 0.839492 | 1.534518e-57 | -8.615850e-47 |
| Msa0659020 | Msa0966120 | -0.800094 | 1.693332e-48 | -8.615850e-47 |
| Msa0673940 | Msa0966120 | 0.818267 | 2.142699e-52 | -8.615850e-47 |
| Msa0685390 | Msa0966120 | -0.832219 | 1.071217e-55 | -8.615850e-47 |
| Msa0689830 | Msa0966120 | 0.831780 | 1.374606e-55 | -8.615850e-47 |
| Msa0702970 | Msa0966120 | 0.826193 | 3.102184e-54 | -8.615850e-47 |
| Msa0751720 | Msa0966120 | 0.822180 | 2.718920e-53 | -8.615850e-47 |
| Msa0756330 | Msa0966120 | 0.800351 | 1.501284e-48 | -8.615850e-47 |
| Msa0767280 | Msa0966120 | 0.807630 | 4.602326e-50 | -8.615850e-47 |
| Msa0771910 | Msa0966120 | 0.814860 | 1.242193e-51 | -8.615850e-47 |
| Msa0774060 | Msa0966120 | 0.801368 | 9.304401e-49 | -8.615850e-47 |
| Msa0831820 | Msa0966120 | 0.809657 | 1.697646e-50 | -8.615850e-47 |
| Msa0835750 | Msa0966120 | 0.817553 | 3.107409e-52 | -8.615850e-47 |
| Msa0838620 | Msa0966120 | -0.803983 | 2.686031e-49 | -8.615850e-47 |
| Msa0121470 | Msa0966120 | 0.815430 | 9.282305e-52 | -8.615850e-47 |
| Msa0121490 | Msa0966120 | 0.808818 | 2.569321e-50 | -8.615850e-47 |
| Msa0131810 | Msa0966120 | 0.815072 | 1.114605e-51 | -8.615850e-47 |
| Msa0134580 | Msa0966120 | 0.800940 | 1.138255e-48 | -8.615850e-47 |
| Msa0158760 | Msa0966120 | 0.806809 | 6.868308e-50 | -8.615850e-47 |
| Msa0173250 | Msa0966120 | 0.871529 | 6.376113e-67 | -8.615850e-47 |
| Msa0185690 | Msa0966120 | 0.819032 | 1.436606e-52 | -8.615850e-47 |
| Msa0206370 | Msa0966120 | 0.839990 | 1.138280e-57 | -8.615850e-47 |
| Msa0368920 | Msa0966120 | 0.812029 | 5.206707e-51 | -8.615850e-47 |
| Msa0372100 | Msa0966120 | 0.811626 | 6.371245e-51 | -8.615850e-47 |
| Msa0379480 | Msa0966120 | 0.807567 | 4.745398e-50 | -8.615850e-47 |
| Msa0388250 | Msa0966120 | 0.804443 | 2.154809e-49 | -8.615850e-47 |
| Msa0396000 | Msa0966120 | 0.801582 | 8.414101e-49 | -8.615850e-47 |
| Msa0401060 | Msa0966120 | 0.865559 | 5.409216e-65 | -8.615850e-47 |
| Msa0416210 | Msa0966120 | 0.847326 | 1.241150e-59 | -8.615850e-47 |
| Msa0433630 | Msa0966120 | 0.821563 | 3.777275e-53 | -8.615850e-47 |
| Msa0437480 | Msa0966120 | 0.818511 | 1.887173e-52 | -8.615850e-47 |
| Msa0440350 | Msa0966120 | 0.809152 | 2.178836e-50 | -8.615850e-47 |
| Msa0447870 | Msa0966120 | 0.854188 | 1.454038e-61 | -8.615850e-47 |
| Msa0450150 | Msa0966120 | 0.806176 | 9.339490e-50 | -8.615850e-47 |
| Msa0467250 | Msa0966120 | 0.821908 | 3.144254e-53 | -8.615850e-47 |
| Msa0480160 | Msa0966120 | 0.822586 | 2.188023e-53 | -8.615850e-47 |
| Msa0260980 | Msa0966120 | 0.808948 | 2.409799e-50 | -8.615850e-47 |
| Msa0304250 | Msa0966120 | 0.807956 | 3.923578e-50 | -8.615850e-47 |
| Msa0323340 | Msa0966120 | 0.811398 | 7.140628e-51 | -8.615850e-47 |
| Msa0336460 | Msa0966120 | 0.803912 | 2.779125e-49 | -8.615850e-47 |
| Msa0354840 | Msa0966120 | 0.817580 | 3.062670e-52 | -8.615850e-47 |
| Msa0356640 | Msa0966120 | 0.841293 | 5.189297e-58 | -8.615850e-47 |
| Msa0484210 | Msa0966120 | -0.805713 | 1.168923e-49 | -8.615850e-47 |
| Msa0495620 | Msa0966120 | 0.846656 | 1.894047e-59 | -8.615850e-47 |
| Msa0521510 | Msa0966120 | 0.818752 | 1.664038e-52 | -8.615850e-47 |
| Msa0521530 | Msa0966120 | 0.806724 | 7.159825e-50 | -8.615850e-47 |
| Msa0530660 | Msa0966120 | 0.811763 | 5.950246e-51 | -8.615850e-47 |
| Msa0566460 | Msa0966120 | 0.838183 | 3.344952e-57 | -8.615850e-47 |
| Msa0568290 | Msa0966120 | -0.804986 | 1.659867e-49 | -8.615850e-47 |
| Msa0573550 | Msa0966120 | 0.814119 | 1.812062e-51 | -8.615850e-47 |
| Msa0587180 | Msa0966120 | 0.822465 | 2.334362e-53 | -8.615850e-47 |
| Msa0846900 | Msa0966120 | 0.837387 | 5.358014e-57 | -8.615850e-47 |
| Msa0850600 | Msa0966120 | 0.803562 | 3.285585e-49 | -8.615850e-47 |
| Msa0881340 | Msa0966120 | 0.802339 | 5.878465e-49 | -8.615850e-47 |
| Msa0900830 | Msa0966120 | 0.818408 | 1.991570e-52 | -8.615850e-47 |
| Msa0925330 | Msa0966120 | 0.980935 | 2.216895e-151 | -8.615850e-47 |
| Msa0926240 | Msa0966120 | 0.815682 | 8.157199e-52 | -8.615850e-47 |
| Msa0965800 | Msa0966120 | 0.823684 | 1.213201e-53 | -8.615850e-47 |
| Msa0966120 | Msa0987670 | 0.822811 | 1.940073e-53 | -8.615850e-47 |
| Msa0966120 | Msa1001620 | 0.920679 | 9.426792e-88 | -8.615850e-47 |
| Msa0966120 | Msa1019180 | 0.811851 | 5.692171e-51 | -8.615850e-47 |
| Msa0966120 | Msa1021560 | 0.820686 | 6.016663e-53 | -8.615850e-47 |
| Msa0966120 | Msa1025200 | 0.826868 | 2.141636e-54 | -8.615850e-47 |
| Msa0966120 | Msa1025220 | 0.810934 | 9.006018e-51 | -8.615850e-47 |
| Msa0966120 | Msa1038860 | 0.803030 | 4.234281e-49 | -8.615850e-47 |
| Msa0966120 | Msa1078080 | 0.807396 | 5.160442e-50 | -8.615850e-47 |
| Msa0966120 | Msa1124210 | 0.814469 | 1.516733e-51 | -8.615850e-47 |
| Msa0966120 | Msa1127200 | 0.837156 | 6.138465e-57 | -8.615850e-47 |
| Msa0966120 | Msa1148930 | 0.812796 | 3.539318e-51 | -8.615850e-47 |
| Msa0966120 | Msa1165460 | 0.827498 | 1.513596e-54 | -8.615850e-47 |
| Msa0966120 | Msa1166670 | 0.817139 | 3.849370e-52 | -8.615850e-47 |
| Msa0966120 | Msa1180840 | 0.815203 | 1.042386e-51 | -8.615850e-47 |
| Msa0966120 | Msa1186260 | 0.805722 | 1.163611e-49 | -8.615850e-47 |
| Msa0966120 | Msa1186670 | 0.801170 | 1.021825e-48 | -8.615850e-47 |
| Msa0966120 | Msa1206040 | 0.802108 | 6.558977e-49 | -8.615850e-47 |
| Msa0966120 | Msa1217890 | 0.805376 | 1.375735e-49 | -8.615850e-47 |
| Msa0966120 | Msa1220580 | 0.846899 | 1.625561e-59 | -8.615850e-47 |
| Msa0966120 | Msa1231490 | 0.804921 | 1.712340e-49 | -8.615850e-47 |
| Msa0966120 | Msa1240940 | 0.811429 | 7.032383e-51 | -8.615850e-47 |
| Msa0966120 | Msa1277300 | 0.808777 | 2.620896e-50 | -8.615850e-47 |
| Msa0966120 | Msa1282300 | 0.824869 | 6.387973e-54 | -8.615850e-47 |
| Msa0966120 | Msa1328870 | 0.802167 | 6.378106e-49 | -8.615850e-47 |
| Msa0966120 | Msa1334560 | 0.859450 | 4.101927e-63 | -8.615850e-47 |
| Msa0966120 | Msa1342760 | 0.814672 | 1.367404e-51 | -8.615850e-47 |
| Msa0966120 | Msa1368170 | 0.825644 | 4.189637e-54 | -8.615850e-47 |
| Msa0966120 | Msa1371800 | 0.856882 | 2.382168e-62 | -8.615850e-47 |
| Msa0966120 | Msa1376310 | 0.861378 | 1.069974e-63 | -8.615850e-47 |
| Msa0966120 | Msa1385570 | 0.815098 | 1.100344e-51 | -8.615850e-47 |
| Msa0966120 | Msa1395050 | 0.834436 | 3.000488e-56 | -8.615850e-47 |
| Msa0966120 | Msa1398490 | 0.812684 | 3.745337e-51 | -8.615850e-47 |
| Msa0966120 | Msa1402010 | 0.856834 | 2.460743e-62 | -8.615850e-47 |
| Msa0966120 | Msa1420830 | 0.809174 | 2.155619e-50 | -8.615850e-47 |
| Msa0966120 | Msa1438510 | 0.813802 | 2.128894e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966120 | MtrunA17_Chr6g0488641 | 98.726 | 157 | 2 | 0 | 1 | 157 | 1 | 157 | 1.48e-115 | 323 |
| Msa0966120 | MtrunA17_Chr8g0389171 | 62.676 | 142 | 53 | 0 | 12 | 153 | 4 | 145 | 4.43e-65 | 196 |
| Msa0966120 | MtrunA17_Chr6g0488021 | 45.679 | 81 | 34 | 2 | 39 | 119 | 113 | 183 | 2.89e-17 | 75.5 |
| Msa0966120 | MtrunA17_Chr6g0488001 | 42.391 | 92 | 43 | 2 | 4 | 95 | 50 | 131 | 3.93e-15 | 69.3 |
| Msa0966120 | MtrunA17_Chr6g0488031 | 37.500 | 88 | 52 | 2 | 62 | 149 | 3 | 87 | 1.07e-14 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0966120 | AT2G06925.1 | 65.563 | 151 | 45 | 1 | 7 | 157 | 5 | 148 | 2.02e-71 | 212 |
| Msa0966120 | AT2G06925.2 | 65.306 | 147 | 44 | 1 | 7 | 153 | 5 | 144 | 2.26e-68 | 204 |
| Msa0966120 | AT2G19690.3 | 54.839 | 62 | 27 | 1 | 39 | 100 | 23 | 83 | 2.91e-18 | 75.5 |
| Msa0966120 | AT2G19690.1 | 46.250 | 80 | 40 | 2 | 39 | 118 | 23 | 99 | 4.98e-18 | 76.3 |
| Msa0966120 | AT2G19690.2 | 46.250 | 80 | 40 | 2 | 39 | 118 | 23 | 99 | 5.49e-18 | 75.9 |
| Msa0966120 | AT4G29460.1 | 46.914 | 81 | 40 | 2 | 41 | 121 | 23 | 100 | 7.78e-18 | 76.6 |
| Msa0966120 | AT4G29470.1 | 42.268 | 97 | 52 | 3 | 25 | 121 | 8 | 100 | 6.01e-17 | 74.3 |
| Msa0966120 | AT4G29470.2 | 42.268 | 97 | 52 | 3 | 25 | 121 | 8 | 100 | 6.01e-17 | 74.3 |
Find 32 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTCATGGAAGCTGCTTTAC+TGG | 0.266457 | 6_3:-94134156 | Msa0966120:CDS |
| AAGTTTGGTTTCGGATTTAT+AGG | 0.284707 | 6_3:+94135688 | None:intergenic |
| CCATGCAGTCTATGAATGTT+TGG | 0.339978 | 6_3:+94134258 | None:intergenic |
| AGTAGGCAAGATTACTGCTT+AGG | 0.360692 | 6_3:+94134112 | None:intergenic |
| AAGCGAGAGTAATTGAAGTT+TGG | 0.362321 | 6_3:+94135673 | None:intergenic |
| GTGCCTCCATTGTTGAGATA+TGG | 0.393871 | 6_3:-94135282 | Msa0966120:CDS |
| TGCCTACTAATCAAGTCTTA+TGG | 0.394596 | 6_3:-94134097 | Msa0966120:three_prime_UTR |
| GAGTAATTGAAGTTTGGTTT+CGG | 0.404382 | 6_3:+94135679 | None:intergenic |
| TGTGAGTCAAGTTTCTGTTC+AGG | 0.441225 | 6_3:-94135376 | Msa0966120:intron |
| CTCAAAGAAAACTTTGTTTG+TGG | 0.448382 | 6_3:+94135768 | None:intergenic |
| AAGAAAACTTTGTTTGTGGC+AGG | 0.453156 | 6_3:+94135772 | None:intergenic |
| CATGTGTTTCCTTTGAATGT+AGG | 0.457173 | 6_3:+94134212 | None:intergenic |
| TGCCATAAGACTTGATTAGT+AGG | 0.462270 | 6_3:+94134095 | None:intergenic |
| GTAGGCAAGATTACTGCTTA+GGG | 0.479026 | 6_3:+94134113 | None:intergenic |
| TTTGGCTGCACTGCTGACTT+AGG | 0.479097 | 6_3:+94134276 | None:intergenic |
| CATGTTTATGCACTTAACAT+AGG | 0.509197 | 6_3:-94135544 | Msa0966120:CDS |
| ATGGAAGCTGCTTTACTGGC+TGG | 0.510582 | 6_3:-94134152 | Msa0966120:CDS |
| ACAAAGGCTCCTACATTCAA+AGG | 0.530546 | 6_3:-94134221 | Msa0966120:CDS |
| AAAACTTTGTTTGTGGCAGG+TGG | 0.540527 | 6_3:+94135775 | None:intergenic |
| TACTGTGGACTATTGTATAG+TGG | 0.545854 | 6_3:-94135255 | Msa0966120:CDS |
| CTTCAATAACATCATCTGCT+TGG | 0.548099 | 6_3:+94134189 | None:intergenic |
| TGAAGTTATCAAGATTGTCA+TGG | 0.550055 | 6_3:-94134171 | Msa0966120:CDS |
| CCAAACATTCATAGACTGCA+TGG | 0.586577 | 6_3:-94134258 | Msa0966120:CDS |
| CTATTGTATAGTGGATGCCC+TGG | 0.587699 | 6_3:-94135246 | Msa0966120:CDS |
| CACACACATGAAAATAAACA+TGG | 0.597313 | 6_3:-94135626 | Msa0966120:exon |
| AACATAGGTGCTGAAACCAC+TGG | 0.598513 | 6_3:-94135529 | Msa0966120:CDS |
| TACTTTCCATATCTCAACAA+TGG | 0.617587 | 6_3:+94135276 | None:intergenic |
| GTTAAGTGCATAAACATGAG+TGG | 0.652688 | 6_3:+94135549 | None:intergenic |
| AACTGAAACAGCTACTCCAG+TGG | 0.671963 | 6_3:+94135513 | None:intergenic |
| TTTCCATATCTCAACAATGG+AGG | 0.673712 | 6_3:+94135279 | None:intergenic |
| TTGAGATATGGAAAGTACTG+TGG | 0.689516 | 6_3:-94135270 | Msa0966120:CDS |
| CAAGCATCTAGACCATCACA+AGG | 0.698237 | 6_3:+94135216 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATTAATATGTTTAGAAT+TGG | + | chr6_3:94134313-94134332 | None:intergenic | 10.0% |
| !! | AACAATTTAACATATATATT+AGG | - | chr6_3:94134882-94134901 | Msa0966120:intron | 10.0% |
| !!! | TGGTTAAAAATAATTTTATA+TGG | + | chr6_3:94135010-94135029 | None:intergenic | 10.0% |
| !!! | CTATTAATATATTCTTTTTA+CGG | - | chr6_3:94135793-94135812 | Msa0966120:five_prime_UTR | 10.0% |
| !!! | TTAATTAATATGTTTAGAAT+TGG | + | chr6_3:94134313-94134332 | None:intergenic | 10.0% |
| !! | AACAATTTAACATATATATT+AGG | - | chr6_3:94134882-94134901 | Msa0966120:intron | 10.0% |
| !!! | TGGTTAAAAATAATTTTATA+TGG | + | chr6_3:94135010-94135029 | None:intergenic | 10.0% |
| !!! | CTATTAATATATTCTTTTTA+CGG | - | chr6_3:94135793-94135812 | Msa0966120:five_prime_UTR | 10.0% |
| !! | AAAATATGTTATCATGTTAT+CGG | + | chr6_3:94134808-94134827 | None:intergenic | 15.0% |
| !! | ACACAAATAAAATAAAGATA+TGG | - | chr6_3:94134960-94134979 | Msa0966120:intron | 15.0% |
| !! | AAATAAAATAAAGATATGGT+AGG | - | chr6_3:94134964-94134983 | Msa0966120:intron | 15.0% |
| !! | TAAAAACAAGAAAGAAAAAT+AGG | + | chr6_3:94135717-94135736 | None:intergenic | 15.0% |
| !! | AAAATATGTTATCATGTTAT+CGG | + | chr6_3:94134808-94134827 | None:intergenic | 15.0% |
| !! | ACACAAATAAAATAAAGATA+TGG | - | chr6_3:94134960-94134979 | Msa0966120:intron | 15.0% |
| !! | AAATAAAATAAAGATATGGT+AGG | - | chr6_3:94134964-94134983 | Msa0966120:intron | 15.0% |
| !! | TAAAAACAAGAAAGAAAAAT+AGG | + | chr6_3:94135717-94135736 | None:intergenic | 15.0% |
| !!! | ATCTAACATTGTTATTGATT+AGG | - | chr6_3:94134715-94134734 | Msa0966120:intron | 20.0% |
| !! | TATGGATAGTCAAAAAATTT+AGG | - | chr6_3:94134778-94134797 | Msa0966120:intron | 20.0% |
| !! | AAATATGTTATCATGTTATC+GGG | + | chr6_3:94134807-94134826 | None:intergenic | 20.0% |
| !!! | TTTTTAACCAGTATACTAAT+TGG | - | chr6_3:94135020-94135039 | Msa0966120:intron | 20.0% |
| !!! | ATTGGTTAGTCTTTATTTAT+GGG | + | chr6_3:94135073-94135092 | None:intergenic | 20.0% |
| !! | AAATGAAGTAATTAGATGAA+GGG | + | chr6_3:94135098-94135117 | None:intergenic | 20.0% |
| !! | ACTAGTAAATAGTATTAGTT+TGG | + | chr6_3:94135202-94135221 | None:intergenic | 20.0% |
| !! | TTATCAAATGTAATGGTTAT+GGG | + | chr6_3:94135243-94135262 | None:intergenic | 20.0% |
| !! | ATTATCAAATGTAATGGTTA+TGG | + | chr6_3:94135244-94135263 | None:intergenic | 20.0% |
| !! | CATAAGATTAATAGTTACTA+AGG | + | chr6_3:94135308-94135327 | None:intergenic | 20.0% |
| !!! | ATCTAACATTGTTATTGATT+AGG | - | chr6_3:94134715-94134734 | Msa0966120:intron | 20.0% |
| !! | TATGGATAGTCAAAAAATTT+AGG | - | chr6_3:94134778-94134797 | Msa0966120:intron | 20.0% |
| !! | AAATATGTTATCATGTTATC+GGG | + | chr6_3:94134807-94134826 | None:intergenic | 20.0% |
| !!! | TTTTTAACCAGTATACTAAT+TGG | - | chr6_3:94135020-94135039 | Msa0966120:intron | 20.0% |
| !!! | ATTGGTTAGTCTTTATTTAT+GGG | + | chr6_3:94135073-94135092 | None:intergenic | 20.0% |
| !! | AAATGAAGTAATTAGATGAA+GGG | + | chr6_3:94135098-94135117 | None:intergenic | 20.0% |
| !! | ACTAGTAAATAGTATTAGTT+TGG | + | chr6_3:94135202-94135221 | None:intergenic | 20.0% |
| !! | TTATCAAATGTAATGGTTAT+GGG | + | chr6_3:94135243-94135262 | None:intergenic | 20.0% |
| !! | ATTATCAAATGTAATGGTTA+TGG | + | chr6_3:94135244-94135263 | None:intergenic | 20.0% |
| !! | CATAAGATTAATAGTTACTA+AGG | + | chr6_3:94135308-94135327 | None:intergenic | 20.0% |
| !!! | TTTTTGAAAATTGAGCTGAT+TGG | - | chr6_3:94134462-94134481 | Msa0966120:intron | 25.0% |
| ! | GAATCAGATGATACTAAAAA+TGG | + | chr6_3:94134689-94134708 | None:intergenic | 25.0% |
| ! | ATTCAATCCTAAAAGCTATA+TGG | - | chr6_3:94134760-94134779 | Msa0966120:intron | 25.0% |
| ! | TAAAATAAAGATATGGTAGG+TGG | - | chr6_3:94134967-94134986 | Msa0966120:intron | 25.0% |
| !!! | CATTGGTTAGTCTTTATTTA+TGG | + | chr6_3:94135074-94135093 | None:intergenic | 25.0% |
| ! | GAAATGAAGTAATTAGATGA+AGG | + | chr6_3:94135099-94135118 | None:intergenic | 25.0% |
| ! | TCATCTAATTACTTCATTTC+TGG | - | chr6_3:94135099-94135118 | Msa0966120:intron | 25.0% |
| ! | TAGCAAAAAAAAATTAGTCC+TGG | + | chr6_3:94135268-94135287 | None:intergenic | 25.0% |
| !! | TTTGCTATACTTTATGTTAG+TGG | - | chr6_3:94135281-94135300 | Msa0966120:CDS | 25.0% |
| ! | TATATGTGTCAATATCATGT+TGG | + | chr6_3:94135390-94135409 | None:intergenic | 25.0% |
| !!! | TTTTTGAAAATTGAGCTGAT+TGG | - | chr6_3:94134462-94134481 | Msa0966120:intron | 25.0% |
| ! | GAATCAGATGATACTAAAAA+TGG | + | chr6_3:94134689-94134708 | None:intergenic | 25.0% |
| ! | ATTCAATCCTAAAAGCTATA+TGG | - | chr6_3:94134760-94134779 | Msa0966120:intron | 25.0% |
| ! | TAAAATAAAGATATGGTAGG+TGG | - | chr6_3:94134967-94134986 | Msa0966120:intron | 25.0% |
| !!! | CATTGGTTAGTCTTTATTTA+TGG | + | chr6_3:94135074-94135093 | None:intergenic | 25.0% |
| ! | GAAATGAAGTAATTAGATGA+AGG | + | chr6_3:94135099-94135118 | None:intergenic | 25.0% |
| ! | TCATCTAATTACTTCATTTC+TGG | - | chr6_3:94135099-94135118 | Msa0966120:intron | 25.0% |
| ! | TAGCAAAAAAAAATTAGTCC+TGG | + | chr6_3:94135268-94135287 | None:intergenic | 25.0% |
| !! | TTTGCTATACTTTATGTTAG+TGG | - | chr6_3:94135281-94135300 | Msa0966120:CDS | 25.0% |
| ! | TATATGTGTCAATATCATGT+TGG | + | chr6_3:94135390-94135409 | None:intergenic | 25.0% |
| ! | CTCAAAGAAAACTTTGTTTG+TGG | + | chr6_3:94134010-94134029 | None:intergenic | 30.0% |
| ! | AAGTTTGGTTTCGGATTTAT+AGG | + | chr6_3:94134090-94134109 | None:intergenic | 30.0% |
| ! | GAGTAATTGAAGTTTGGTTT+CGG | + | chr6_3:94134099-94134118 | None:intergenic | 30.0% |
| !! | TTTATTTTCATGTGTGTGTG+TGG | + | chr6_3:94134147-94134166 | None:intergenic | 30.0% |
| CACACACATGAAAATAAACA+TGG | - | chr6_3:94134149-94134168 | Msa0966120:CDS | 30.0% | |
| CATGTTTATGCACTTAACAT+AGG | - | chr6_3:94134231-94134250 | Msa0966120:CDS | 30.0% | |
| CTCTTTGCTCTACAAAAAAA+AGG | + | chr6_3:94134367-94134386 | None:intergenic | 30.0% | |
| TACTTTCCATATCTCAACAA+TGG | + | chr6_3:94134502-94134521 | None:intergenic | 30.0% | |
| !! | TATTTTTGACTGTGACACAT+TGG | + | chr6_3:94134600-94134619 | None:intergenic | 30.0% |
| ! | TGACTATCCATATAGCTTTT+AGG | + | chr6_3:94134770-94134789 | None:intergenic | 30.0% |
| ATCAGTAAGTATTATTGCAG+TGG | - | chr6_3:94134912-94134931 | Msa0966120:intron | 30.0% | |
| CCTGGAATTATCAAATGTAA+TGG | + | chr6_3:94135250-94135269 | None:intergenic | 30.0% | |
| ! | CCATTACATTTGATAATTCC+AGG | - | chr6_3:94135247-94135266 | Msa0966120:CDS | 30.0% |
| TGTCAATATCATGTTGGTAT+CGG | + | chr6_3:94135384-94135403 | None:intergenic | 30.0% | |
| TAGACTGCATGGAAAAATTT+AGG | - | chr6_3:94135528-94135547 | Msa0966120:CDS | 30.0% | |
| GGAAAAATTTAGGAACACAA+AGG | - | chr6_3:94135538-94135557 | Msa0966120:CDS | 30.0% | |
| TGAAGTTATCAAGATTGTCA+TGG | - | chr6_3:94135604-94135623 | Msa0966120:CDS | 30.0% | |
| ! | CTCAAAGAAAACTTTGTTTG+TGG | + | chr6_3:94134010-94134029 | None:intergenic | 30.0% |
| ! | AAGTTTGGTTTCGGATTTAT+AGG | + | chr6_3:94134090-94134109 | None:intergenic | 30.0% |
| ! | GAGTAATTGAAGTTTGGTTT+CGG | + | chr6_3:94134099-94134118 | None:intergenic | 30.0% |
| !! | TTTATTTTCATGTGTGTGTG+TGG | + | chr6_3:94134147-94134166 | None:intergenic | 30.0% |
| CACACACATGAAAATAAACA+TGG | - | chr6_3:94134149-94134168 | Msa0966120:CDS | 30.0% | |
| CATGTTTATGCACTTAACAT+AGG | - | chr6_3:94134231-94134250 | Msa0966120:CDS | 30.0% | |
| CTCTTTGCTCTACAAAAAAA+AGG | + | chr6_3:94134367-94134386 | None:intergenic | 30.0% | |
| TACTTTCCATATCTCAACAA+TGG | + | chr6_3:94134502-94134521 | None:intergenic | 30.0% | |
| !! | TATTTTTGACTGTGACACAT+TGG | + | chr6_3:94134600-94134619 | None:intergenic | 30.0% |
| ! | TGACTATCCATATAGCTTTT+AGG | + | chr6_3:94134770-94134789 | None:intergenic | 30.0% |
| ATCAGTAAGTATTATTGCAG+TGG | - | chr6_3:94134912-94134931 | Msa0966120:intron | 30.0% | |
| CCTGGAATTATCAAATGTAA+TGG | + | chr6_3:94135250-94135269 | None:intergenic | 30.0% | |
| ! | CCATTACATTTGATAATTCC+AGG | - | chr6_3:94135247-94135266 | Msa0966120:CDS | 30.0% |
| TGTCAATATCATGTTGGTAT+CGG | + | chr6_3:94135384-94135403 | None:intergenic | 30.0% | |
| TAGACTGCATGGAAAAATTT+AGG | - | chr6_3:94135528-94135547 | Msa0966120:CDS | 30.0% | |
| GGAAAAATTTAGGAACACAA+AGG | - | chr6_3:94135538-94135557 | Msa0966120:CDS | 30.0% | |
| TGAAGTTATCAAGATTGTCA+TGG | - | chr6_3:94135604-94135623 | Msa0966120:CDS | 30.0% | |
| ! | AAGAAAACTTTGTTTGTGGC+AGG | + | chr6_3:94134006-94134025 | None:intergenic | 35.0% |
| AAGCGAGAGTAATTGAAGTT+TGG | + | chr6_3:94134105-94134124 | None:intergenic | 35.0% | |
| !! | CTTCAATTACTCTCGCTTTT+TGG | - | chr6_3:94134107-94134126 | Msa0966120:three_prime_UTR | 35.0% |
| GTTAAGTGCATAAACATGAG+TGG | + | chr6_3:94134229-94134248 | None:intergenic | 35.0% | |
| TTTCCATATCTCAACAATGG+AGG | + | chr6_3:94134499-94134518 | None:intergenic | 35.0% | |
| !! | TTGAGATATGGAAAGTACTG+TGG | - | chr6_3:94134505-94134524 | Msa0966120:intron | 35.0% |
| ! | TACTGTGGACTATTGTATAG+TGG | - | chr6_3:94134520-94134539 | Msa0966120:intron | 35.0% |
| TGTGTGTGTTTGATATCAAG+TGG | + | chr6_3:94134945-94134964 | None:intergenic | 35.0% | |
| TACAAGGCCAATTAGTATAC+TGG | + | chr6_3:94135030-94135049 | None:intergenic | 35.0% | |
| TAAACTTCATAGCAGGTACA+AGG | + | chr6_3:94135046-94135065 | None:intergenic | 35.0% | |
| GTAATTAGATGAAGGGTCAT+TGG | + | chr6_3:94135091-94135110 | None:intergenic | 35.0% | |
| AATCCTCTTAAGCATAGTCT+TGG | + | chr6_3:94135158-94135177 | None:intergenic | 35.0% | |
| TTTCAGACTGAATGTCTGTT+TGG | - | chr6_3:94135338-94135357 | Msa0966120:intron | 35.0% | |
| AGCTAGCTAATGATTAATGC+TGG | - | chr6_3:94135457-94135476 | Msa0966120:intron | 35.0% | |
| CATGTGTTTCCTTTGAATGT+AGG | + | chr6_3:94135566-94135585 | None:intergenic | 35.0% | |
| CTTCAATAACATCATCTGCT+TGG | + | chr6_3:94135589-94135608 | None:intergenic | 35.0% | |
| TGCCTACTAATCAAGTCTTA+TGG | - | chr6_3:94135678-94135697 | Msa0966120:five_prime_UTR | 35.0% | |
| TGCCATAAGACTTGATTAGT+AGG | + | chr6_3:94135683-94135702 | None:intergenic | 35.0% | |
| ! | AAGAAAACTTTGTTTGTGGC+AGG | + | chr6_3:94134006-94134025 | None:intergenic | 35.0% |
| AAGCGAGAGTAATTGAAGTT+TGG | + | chr6_3:94134105-94134124 | None:intergenic | 35.0% | |
| !! | CTTCAATTACTCTCGCTTTT+TGG | - | chr6_3:94134107-94134126 | Msa0966120:three_prime_UTR | 35.0% |
| GTTAAGTGCATAAACATGAG+TGG | + | chr6_3:94134229-94134248 | None:intergenic | 35.0% | |
| TTTCCATATCTCAACAATGG+AGG | + | chr6_3:94134499-94134518 | None:intergenic | 35.0% | |
| !! | TTGAGATATGGAAAGTACTG+TGG | - | chr6_3:94134505-94134524 | Msa0966120:intron | 35.0% |
| ! | TACTGTGGACTATTGTATAG+TGG | - | chr6_3:94134520-94134539 | Msa0966120:intron | 35.0% |
| TGTGTGTGTTTGATATCAAG+TGG | + | chr6_3:94134945-94134964 | None:intergenic | 35.0% | |
| TACAAGGCCAATTAGTATAC+TGG | + | chr6_3:94135030-94135049 | None:intergenic | 35.0% | |
| TAAACTTCATAGCAGGTACA+AGG | + | chr6_3:94135046-94135065 | None:intergenic | 35.0% | |
| GTAATTAGATGAAGGGTCAT+TGG | + | chr6_3:94135091-94135110 | None:intergenic | 35.0% | |
| AATCCTCTTAAGCATAGTCT+TGG | + | chr6_3:94135158-94135177 | None:intergenic | 35.0% | |
| TTTCAGACTGAATGTCTGTT+TGG | - | chr6_3:94135338-94135357 | Msa0966120:intron | 35.0% | |
| AGCTAGCTAATGATTAATGC+TGG | - | chr6_3:94135457-94135476 | Msa0966120:intron | 35.0% | |
| CATGTGTTTCCTTTGAATGT+AGG | + | chr6_3:94135566-94135585 | None:intergenic | 35.0% | |
| CTTCAATAACATCATCTGCT+TGG | + | chr6_3:94135589-94135608 | None:intergenic | 35.0% | |
| TGCCTACTAATCAAGTCTTA+TGG | - | chr6_3:94135678-94135697 | Msa0966120:five_prime_UTR | 35.0% | |
| TGCCATAAGACTTGATTAGT+AGG | + | chr6_3:94135683-94135702 | None:intergenic | 35.0% | |
| ! | AAAACTTTGTTTGTGGCAGG+TGG | + | chr6_3:94134003-94134022 | None:intergenic | 40.0% |
| TGTGAGTCAAGTTTCTGTTC+AGG | - | chr6_3:94134399-94134418 | Msa0966120:intron | 40.0% | |
| ! | CATCACAAGGTTTTTCACCA+GGG | + | chr6_3:94134549-94134568 | None:intergenic | 40.0% |
| GGGTACATAAACTTCATAGC+AGG | + | chr6_3:94135053-94135072 | None:intergenic | 40.0% | |
| ! | TAAGCATAGTCTTGGAGTGA+AGG | + | chr6_3:94135150-94135169 | None:intergenic | 40.0% |
| ACTCCAAGACTATGCTTAAG+AGG | - | chr6_3:94135152-94135171 | Msa0966120:intron | 40.0% | |
| GTTTGGTATCCTACACATGT+TGG | - | chr6_3:94135355-94135374 | Msa0966120:intron | 40.0% | |
| CCATGCAGTCTATGAATGTT+TGG | + | chr6_3:94135520-94135539 | None:intergenic | 40.0% | |
| CCAAACATTCATAGACTGCA+TGG | - | chr6_3:94135517-94135536 | Msa0966120:CDS | 40.0% | |
| ACAAAGGCTCCTACATTCAA+AGG | - | chr6_3:94135554-94135573 | Msa0966120:CDS | 40.0% | |
| GTAGGCAAGATTACTGCTTA+GGG | + | chr6_3:94135665-94135684 | None:intergenic | 40.0% | |
| AGTAGGCAAGATTACTGCTT+AGG | + | chr6_3:94135666-94135685 | None:intergenic | 40.0% | |
| ! | AAAACTTTGTTTGTGGCAGG+TGG | + | chr6_3:94134003-94134022 | None:intergenic | 40.0% |
| TGTGAGTCAAGTTTCTGTTC+AGG | - | chr6_3:94134399-94134418 | Msa0966120:intron | 40.0% | |
| ! | CATCACAAGGTTTTTCACCA+GGG | + | chr6_3:94134549-94134568 | None:intergenic | 40.0% |
| GGGTACATAAACTTCATAGC+AGG | + | chr6_3:94135053-94135072 | None:intergenic | 40.0% | |
| ! | TAAGCATAGTCTTGGAGTGA+AGG | + | chr6_3:94135150-94135169 | None:intergenic | 40.0% |
| ACTCCAAGACTATGCTTAAG+AGG | - | chr6_3:94135152-94135171 | Msa0966120:intron | 40.0% | |
| GTTTGGTATCCTACACATGT+TGG | - | chr6_3:94135355-94135374 | Msa0966120:intron | 40.0% | |
| CCATGCAGTCTATGAATGTT+TGG | + | chr6_3:94135520-94135539 | None:intergenic | 40.0% | |
| CCAAACATTCATAGACTGCA+TGG | - | chr6_3:94135517-94135536 | Msa0966120:CDS | 40.0% | |
| ACAAAGGCTCCTACATTCAA+AGG | - | chr6_3:94135554-94135573 | Msa0966120:CDS | 40.0% | |
| GTAGGCAAGATTACTGCTTA+GGG | + | chr6_3:94135665-94135684 | None:intergenic | 40.0% | |
| AGTAGGCAAGATTACTGCTT+AGG | + | chr6_3:94135666-94135685 | None:intergenic | 40.0% | |
| !! | AACATAGGTGCTGAAACCAC+TGG | - | chr6_3:94134246-94134265 | Msa0966120:CDS | 45.0% |
| AACTGAAACAGCTACTCCAG+TGG | + | chr6_3:94134265-94134284 | None:intergenic | 45.0% | |
| GTGCCTCCATTGTTGAGATA+TGG | - | chr6_3:94134493-94134512 | Msa0966120:intron | 45.0% | |
| !! | CTATTGTATAGTGGATGCCC+TGG | - | chr6_3:94134529-94134548 | Msa0966120:intron | 45.0% |
| ! | CCATCACAAGGTTTTTCACC+AGG | + | chr6_3:94134550-94134569 | None:intergenic | 45.0% |
| CCTGGTGAAAAACCTTGTGA+TGG | - | chr6_3:94134547-94134566 | Msa0966120:intron | 45.0% | |
| CAAGCATCTAGACCATCACA+AGG | + | chr6_3:94134562-94134581 | None:intergenic | 45.0% | |
| AGTCTTGGAGTGAAGGAGAA+GGG | + | chr6_3:94135143-94135162 | None:intergenic | 45.0% | |
| ! | TAGTCTTGGAGTGAAGGAGA+AGG | + | chr6_3:94135144-94135163 | None:intergenic | 45.0% |
| TATCGGACACCAACATGTGT+AGG | + | chr6_3:94135367-94135386 | None:intergenic | 45.0% | |
| CTTAGGTAGTCATCTGCAGA+AGG | + | chr6_3:94135485-94135504 | None:intergenic | 45.0% | |
| ! | TGTCATGGAAGCTGCTTTAC+TGG | - | chr6_3:94135619-94135638 | Msa0966120:CDS | 45.0% |
| !! | AACATAGGTGCTGAAACCAC+TGG | - | chr6_3:94134246-94134265 | Msa0966120:CDS | 45.0% |
| AACTGAAACAGCTACTCCAG+TGG | + | chr6_3:94134265-94134284 | None:intergenic | 45.0% | |
| GTGCCTCCATTGTTGAGATA+TGG | - | chr6_3:94134493-94134512 | Msa0966120:intron | 45.0% | |
| !! | CTATTGTATAGTGGATGCCC+TGG | - | chr6_3:94134529-94134548 | Msa0966120:intron | 45.0% |
| ! | CCATCACAAGGTTTTTCACC+AGG | + | chr6_3:94134550-94134569 | None:intergenic | 45.0% |
| CCTGGTGAAAAACCTTGTGA+TGG | - | chr6_3:94134547-94134566 | Msa0966120:intron | 45.0% | |
| CAAGCATCTAGACCATCACA+AGG | + | chr6_3:94134562-94134581 | None:intergenic | 45.0% | |
| AGTCTTGGAGTGAAGGAGAA+GGG | + | chr6_3:94135143-94135162 | None:intergenic | 45.0% | |
| ! | TAGTCTTGGAGTGAAGGAGA+AGG | + | chr6_3:94135144-94135163 | None:intergenic | 45.0% |
| TATCGGACACCAACATGTGT+AGG | + | chr6_3:94135367-94135386 | None:intergenic | 45.0% | |
| CTTAGGTAGTCATCTGCAGA+AGG | + | chr6_3:94135485-94135504 | None:intergenic | 45.0% | |
| ! | TGTCATGGAAGCTGCTTTAC+TGG | - | chr6_3:94135619-94135638 | Msa0966120:CDS | 45.0% |
| !! | TTTGGCTGCACTGCTGACTT+AGG | + | chr6_3:94135502-94135521 | None:intergenic | 50.0% |
| ! | ATGGAAGCTGCTTTACTGGC+TGG | - | chr6_3:94135623-94135642 | Msa0966120:exon | 50.0% |
| !! | TTTGGCTGCACTGCTGACTT+AGG | + | chr6_3:94135502-94135521 | None:intergenic | 50.0% |
| ! | ATGGAAGCTGCTTTACTGGC+TGG | - | chr6_3:94135623-94135642 | Msa0966120:exon | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 94133966 | 94135831 | 94133966 | ID=Msa0966120;Name=Msa0966120 |
| chr6_3 | mRNA | 94133966 | 94135831 | 94133966 | ID=Msa0966120-mRNA-1;Parent=Msa0966120;Name=Msa0966120-mRNA-1;_AED=0.08;_eAED=0.08;_QI=190|1|1|1|1|1|4|164|157 |
| chr6_3 | exon | 94133966 | 94134305 | 94133966 | ID=Msa0966120-mRNA-1:exon:17353;Parent=Msa0966120-mRNA-1 |
| chr6_3 | exon | 94135178 | 94135303 | 94135178 | ID=Msa0966120-mRNA-1:exon:17352;Parent=Msa0966120-mRNA-1 |
| chr6_3 | exon | 94135377 | 94135419 | 94135377 | ID=Msa0966120-mRNA-1:exon:17351;Parent=Msa0966120-mRNA-1 |
| chr6_3 | exon | 94135513 | 94135831 | 94135513 | ID=Msa0966120-mRNA-1:exon:17350;Parent=Msa0966120-mRNA-1 |
| chr6_3 | five_prime_UTR | 94135642 | 94135831 | 94135642 | ID=Msa0966120-mRNA-1:five_prime_utr;Parent=Msa0966120-mRNA-1 |
| chr6_3 | CDS | 94135513 | 94135641 | 94135513 | ID=Msa0966120-mRNA-1:cds;Parent=Msa0966120-mRNA-1 |
| chr6_3 | CDS | 94135377 | 94135419 | 94135377 | ID=Msa0966120-mRNA-1:cds;Parent=Msa0966120-mRNA-1 |
| chr6_3 | CDS | 94135178 | 94135303 | 94135178 | ID=Msa0966120-mRNA-1:cds;Parent=Msa0966120-mRNA-1 |
| chr6_3 | CDS | 94134130 | 94134305 | 94134130 | ID=Msa0966120-mRNA-1:cds;Parent=Msa0966120-mRNA-1 |
| chr6_3 | three_prime_UTR | 94133966 | 94134129 | 94133966 | ID=Msa0966120-mRNA-1:three_prime_utr;Parent=Msa0966120-mRNA-1 |
| Gene Sequence |
| Protein sequence |
