Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480480 | XP_003595777.1 | 98.851 | 435 | 2 | 1 | 1 | 432 | 1 | 435 | 0.0 | 869 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480480 | sp|F4K2F0|EML3_ARATH | 55.476 | 420 | 157 | 9 | 1 | 416 | 1 | 394 | 4.66e-140 | 409 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480480 | G7IJ02 | 98.851 | 435 | 2 | 1 | 1 | 432 | 1 | 435 | 0.0 | 869 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0480480 | Msa1400930 | 0.801608 | 8.310431e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480480 | MtrunA17_Chr2g0308511 | 98.851 | 435 | 2 | 1 | 1 | 432 | 1 | 435 | 0.0 | 869 |
| Msa0480480 | MtrunA17_Chr1g0175141 | 52.308 | 390 | 124 | 9 | 51 | 431 | 1 | 337 | 1.70e-122 | 360 |
| Msa0480480 | MtrunA17_Chr4g0010421 | 84.884 | 172 | 23 | 1 | 1 | 169 | 1 | 172 | 4.54e-103 | 303 |
| Msa0480480 | MtrunA17_Chr4g0010411 | 74.146 | 205 | 48 | 4 | 232 | 432 | 2 | 205 | 6.52e-87 | 263 |
| Msa0480480 | MtrunA17_Chr4g0056121 | 80.435 | 46 | 9 | 0 | 60 | 105 | 20 | 65 | 5.39e-17 | 77.8 |
| Msa0480480 | MtrunA17_Chr4g0056121 | 54.795 | 73 | 30 | 2 | 198 | 268 | 66 | 137 | 1.07e-14 | 71.2 |
| Msa0480480 | MtrunA17_Chr7g0254081 | 53.333 | 60 | 28 | 0 | 58 | 117 | 1 | 60 | 1.33e-14 | 75.5 |
| Msa0480480 | MtrunA17_Chr4g0056131 | 46.377 | 69 | 24 | 1 | 347 | 415 | 1 | 56 | 2.35e-12 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480480 | AT5G13020.1 | 55.476 | 420 | 157 | 9 | 1 | 416 | 1 | 394 | 4.74e-141 | 409 |
| Msa0480480 | AT2G44440.1 | 55.243 | 391 | 158 | 9 | 41 | 421 | 45 | 428 | 7.49e-141 | 409 |
| Msa0480480 | AT5G13020.3 | 56.610 | 295 | 105 | 6 | 1 | 294 | 1 | 273 | 1.26e-97 | 294 |
| Msa0480480 | AT5G13020.2 | 56.401 | 289 | 103 | 6 | 1 | 288 | 1 | 267 | 9.11e-94 | 286 |
| Msa0480480 | AT3G12140.2 | 47.606 | 376 | 127 | 9 | 51 | 418 | 1 | 314 | 1.02e-88 | 273 |
| Msa0480480 | AT3G12140.1 | 47.606 | 376 | 127 | 9 | 51 | 418 | 1 | 314 | 1.02e-88 | 273 |
| Msa0480480 | AT5G06780.1 | 43.085 | 376 | 134 | 8 | 49 | 418 | 6 | 307 | 6.21e-87 | 268 |
| Msa0480480 | AT3G12140.3 | 47.453 | 373 | 126 | 9 | 51 | 415 | 1 | 311 | 6.58e-87 | 270 |
| Msa0480480 | AT5G06780.2 | 43.048 | 374 | 133 | 8 | 51 | 418 | 1 | 300 | 4.27e-86 | 265 |
Find 168 sgRNAs with CRISPR-Local
Find 436 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCATCAGCTTGAGCTTTAA+AGG | 0.189479 | 3_3:-85755167 | None:intergenic |
| TGCTTCTTGCCCTTAGTTCC+TGG | 0.202762 | 3_3:-85755733 | None:intergenic |
| GGAACACCTACGTTGTAAAA+TGG | 0.218669 | 3_3:+85758981 | Msa0480480:three_prime_UTR |
| AGGATGACAATTATGTAATT+TGG | 0.222474 | 3_3:+85759073 | Msa0480480:three_prime_UTR |
| GTGGGGTGCAGCCACGGGCT+GGG | 0.250938 | 3_3:-85755674 | None:intergenic |
| CACCAAGTCTTGTGAATAAA+TGG | 0.261589 | 3_3:-85759209 | None:intergenic |
| GGTGGGGTGCAGCCACGGGC+TGG | 0.267425 | 3_3:-85755675 | None:intergenic |
| CAGCCCAGTGTGCTGAGTTC+TGG | 0.291340 | 3_3:+85755535 | Msa0480480:CDS |
| CCTAGAGGGGCACGTCTTGC+TGG | 0.293075 | 3_3:+85755031 | Msa0480480:CDS |
| ATGAACGAATCGAAGATCTT+AGG | 0.308453 | 3_3:-85753465 | None:intergenic |
| CCTGGAATCAACCATCGTTT+TGG | 0.329010 | 3_3:+85757763 | Msa0480480:CDS |
| AATAAAGCAATACCCTTCTT+CGG | 0.340861 | 3_3:+85755950 | Msa0480480:CDS |
| TGGGGTGCAGCCACGGGCTG+GGG | 0.347249 | 3_3:-85755673 | None:intergenic |
| CTCAAGCTGATGCCATTACT+TGG | 0.350686 | 3_3:+85755176 | Msa0480480:CDS |
| GGACTCGGAAACTGAGTTAT+TGG | 0.357216 | 3_3:-85753405 | None:intergenic |
| GATCTTTCTGATGGCGATAA+TGG | 0.357677 | 3_3:+85758278 | Msa0480480:CDS |
| GTAGGTCGTGATAGTGTTCC+AGG | 0.364041 | 3_3:+85757814 | Msa0480480:CDS |
| CACAAGACTTGGTGACTGTT+TGG | 0.364338 | 3_3:+85759218 | Msa0480480:three_prime_UTR |
| TGGCTGGTGGGGTGCAGCCA+CGG | 0.365263 | 3_3:-85755680 | None:intergenic |
| GAGGAACATAGGGAACTTCT+AGG | 0.365417 | 3_3:+85755338 | Msa0480480:CDS |
| GTCAATTTCACCGTACATCC+TGG | 0.372915 | 3_3:-85755089 | None:intergenic |
| GGGGCACGTCTTGCTGGGAA+TGG | 0.373208 | 3_3:+85755037 | Msa0480480:CDS |
| GAACACCTACGTTGTAAAAT+GGG | 0.374011 | 3_3:+85758982 | Msa0480480:three_prime_UTR |
| TACCCATGATGATTAAGATT+TGG | 0.377473 | 3_3:-85759253 | None:intergenic |
| GTACCCGAAGTAACTCTATT+AGG | 0.380380 | 3_3:-85755996 | None:intergenic |
| TTGCCCTTAGTTCCTGGAAC+AGG | 0.381177 | 3_3:-85755727 | None:intergenic |
| TTCTCAATTTCATGTACATC+AGG | 0.383976 | 3_3:-85758082 | None:intergenic |
| GGCTGGTGGGGTGCAGCCAC+GGG | 0.385323 | 3_3:-85755679 | None:intergenic |
| CCAAAACGATGGTTGATTCC+AGG | 0.388750 | 3_3:-85757763 | None:intergenic |
| CCCCTACCTCTTCCAGCTCC+TGG | 0.389953 | 3_3:-85757832 | None:intergenic |
| TGCTTTATTGAAGGTGCTCC+TGG | 0.391044 | 3_3:-85755936 | None:intergenic |
| TTGATTTAACATGTGAGAAA+TGG | 0.395327 | 3_3:-85758943 | None:intergenic |
| ATAAAGCAATACCCTTCTTC+GGG | 0.395622 | 3_3:+85755951 | Msa0480480:CDS |
| TCGATTTGTCGTGTCGGACT+CGG | 0.413204 | 3_3:-85753420 | None:intergenic |
| TTTCTCACATGTTAAATCAA+TGG | 0.415277 | 3_3:+85758946 | Msa0480480:CDS |
| GGAAAACGTGGACCTGTTCC+AGG | 0.422832 | 3_3:+85755715 | Msa0480480:CDS |
| ACTTCGCTTCCCGTGAAATC+TGG | 0.422993 | 3_3:+85753579 | Msa0480480:five_prime_UTR |
| TGGTAATAATTATTTATTGA+GGG | 0.429672 | 3_3:+85759093 | Msa0480480:three_prime_UTR |
| GGGAAGTGTAAATGAATCAT+TGG | 0.431698 | 3_3:+85756255 | Msa0480480:CDS |
| TCTCTTGTATTCTATCAGAT+AGG | 0.434573 | 3_3:+85759053 | Msa0480480:three_prime_UTR |
| GATCTGGTCGTGGGATGAAT+AGG | 0.438428 | 3_3:+85757788 | Msa0480480:CDS |
| TCATAGAAGTTATTGTCATC+AGG | 0.439972 | 3_3:-85756089 | None:intergenic |
| TAATTTAATACAGCAAATAT+AGG | 0.442764 | 3_3:-85759176 | None:intergenic |
| ACACCAAATCTTAATCATCA+TGG | 0.446043 | 3_3:+85759250 | Msa0480480:three_prime_UTR |
| GGGCACGTCTTGCTGGGAAT+GGG | 0.448749 | 3_3:+85755038 | Msa0480480:CDS |
| AGAGGTAGGGGAGGTACAAA+GGG | 0.450148 | 3_3:+85757844 | Msa0480480:CDS |
| TTGCCATCACAGAATGGAAT+CGG | 0.451792 | 3_3:+85757886 | Msa0480480:CDS |
| CGTGATAGTGTTCCAGGAGC+TGG | 0.451941 | 3_3:+85757820 | Msa0480480:CDS |
| TTCAATATTATTTCTAGGGA+GGG | 0.453417 | 3_3:-85753350 | None:intergenic |
| GAATGAGGAAGGAGGAGTAG+AGG | 0.456632 | 3_3:-85753507 | None:intergenic |
| CACCAGCCATCTTCTTCTGT+TGG | 0.456682 | 3_3:+85755694 | Msa0480480:CDS |
| CAATACCCTTCTTCGGGACC+AGG | 0.459640 | 3_3:+85755957 | Msa0480480:CDS |
| CGGAAGATATTCAATGGGTA+GGG | 0.460464 | 3_3:+85757734 | Msa0480480:CDS |
| TGGGGAAAAGGAGGCATTCA+AGG | 0.461374 | 3_3:+85759001 | Msa0480480:three_prime_UTR |
| CACCATTTATTCACAAGACT+TGG | 0.462492 | 3_3:+85759207 | Msa0480480:three_prime_UTR |
| GATTATCAAATGAGGAACAT+AGG | 0.464821 | 3_3:+85755327 | Msa0480480:CDS |
| GAAGGGTATTGCTTTATTGA+AGG | 0.465077 | 3_3:-85755945 | None:intergenic |
| TGTAAATGAATCATTGGAAT+GGG | 0.466303 | 3_3:+85756261 | Msa0480480:CDS |
| ATTATCAAATGAGGAACATA+GGG | 0.470814 | 3_3:+85755328 | Msa0480480:CDS |
| GGGTAACTTGTCAGGTGGAA+AGG | 0.475104 | 3_3:+85758041 | Msa0480480:intron |
| TTGGTAATAATTATTTATTG+AGG | 0.477000 | 3_3:+85759092 | Msa0480480:three_prime_UTR |
| CACAGACACACTAGTTAAAG+AGG | 0.478328 | 3_3:+85757942 | Msa0480480:CDS |
| TCTCTCCGGAAGATATTCAA+TGG | 0.483434 | 3_3:+85757728 | Msa0480480:CDS |
| CCAGGAGCTGGAAGAGGTAG+GGG | 0.486141 | 3_3:+85757832 | Msa0480480:CDS |
| GAGTAGAGGAACAATGATTG+AGG | 0.486194 | 3_3:-85753493 | None:intergenic |
| TCCGTACCATCACAATCTTA+TGG | 0.486303 | 3_3:+85755628 | Msa0480480:CDS |
| TGGACCTGTTCCAGGAACTA+AGG | 0.487227 | 3_3:+85755723 | Msa0480480:CDS |
| GTGTAAATGAATCATTGGAA+TGG | 0.491091 | 3_3:+85756260 | Msa0480480:CDS |
| TTAAGGGAGTGGAGACAGAC+AGG | 0.491451 | 3_3:+85755505 | Msa0480480:intron |
| GAAAGCCAAGAAAATATTGA+AGG | 0.498578 | 3_3:+85758102 | Msa0480480:CDS |
| GTACCTAATAGAGTTACTTC+GGG | 0.499309 | 3_3:+85755993 | Msa0480480:CDS |
| TACGTTGTAAAATGGGGAAA+AGG | 0.501591 | 3_3:+85758989 | Msa0480480:three_prime_UTR |
| CCTACCCATTGAATATCTTC+CGG | 0.502345 | 3_3:-85757733 | None:intergenic |
| AGTACCTAATAGAGTTACTT+CGG | 0.502873 | 3_3:+85755992 | Msa0480480:CDS |
| CTAGAGGGGCACGTCTTGCT+GGG | 0.503115 | 3_3:+85755032 | Msa0480480:CDS |
| GGTAACTTGTCAGGTGGAAA+GGG | 0.504129 | 3_3:+85758042 | Msa0480480:intron |
| GTGGATGTAAGTACATCTAC+TGG | 0.505198 | 3_3:-85756134 | None:intergenic |
| GAAGCAGAGACTGTTGGACT+TGG | 0.505403 | 3_3:-85755580 | None:intergenic |
| TCCAGGAGCTGGAAGAGGTA+GGG | 0.508269 | 3_3:+85757831 | Msa0480480:CDS |
| AATAGAGTTACTTCGGGTAC+TGG | 0.508423 | 3_3:+85755999 | Msa0480480:CDS |
| TTACGAGAAGCAGAGACTGT+TGG | 0.510483 | 3_3:-85755586 | None:intergenic |
| AACTCAGCACACTGGGCTGA+TGG | 0.513722 | 3_3:-85755531 | None:intergenic |
| TCAATTTCACCGTACATCCT+GGG | 0.514345 | 3_3:-85755088 | None:intergenic |
| CCAGCAAGACGTGCCCCTCT+AGG | 0.514854 | 3_3:-85755031 | None:intergenic |
| TTTCCGATTCCATTCTGTGA+TGG | 0.519534 | 3_3:-85757889 | None:intergenic |
| CAATGGGTAGGGGAGGAACC+TGG | 0.520661 | 3_3:+85757745 | Msa0480480:CDS |
| AAGAAAATGTACCCAAGTAA+TGG | 0.521418 | 3_3:-85755188 | None:intergenic |
| CTTCCCGTGAAATCTGGCTA+TGG | 0.521624 | 3_3:+85753585 | Msa0480480:exon |
| AGCGAAAGTGAAAGAGAATG+AGG | 0.522621 | 3_3:-85753522 | None:intergenic |
| GATTTATTGCCATCACAGAA+TGG | 0.526792 | 3_3:+85757880 | Msa0480480:CDS |
| TGCTTCTCGTAAGAAGCAAA+AGG | 0.528673 | 3_3:+85755597 | Msa0480480:CDS |
| GTTACTTCGGGTACTGGCAC+AGG | 0.529579 | 3_3:+85756005 | Msa0480480:CDS |
| CTCTCCGGAAGATATTCAAT+GGG | 0.530818 | 3_3:+85757729 | Msa0480480:CDS |
| TTCCAACAGAAGAAGATGGC+TGG | 0.531524 | 3_3:-85755696 | None:intergenic |
| TGTCCAGAACTCAGCACACT+GGG | 0.531670 | 3_3:-85755538 | None:intergenic |
| CGTACTTTCTTGCCAACGAG+CGG | 0.536223 | 3_3:-85756056 | None:intergenic |
| CACCAAATCTTAATCATCAT+GGG | 0.536229 | 3_3:+85759251 | Msa0480480:three_prime_UTR |
| CACAATCTGGTCTATGACAT+GGG | 0.537543 | 3_3:+85756235 | Msa0480480:CDS |
| AAGGTGCTCCTGGTAATACT+TGG | 0.538548 | 3_3:-85755926 | None:intergenic |
| CTTGTAACCGCAGATCTCTC+CGG | 0.540537 | 3_3:+85757714 | Msa0480480:intron |
| AGTGTTCCAGGAGCTGGAAG+AGG | 0.541350 | 3_3:+85757826 | Msa0480480:CDS |
| ATGTCATACCCCAGGATGTA+CGG | 0.542230 | 3_3:+85755079 | Msa0480480:CDS |
| TTTCAATATTATTTCTAGGG+AGG | 0.543126 | 3_3:-85753351 | None:intergenic |
| TCAAATTCACCAACTTGAGC+AGG | 0.543941 | 3_3:+85755120 | Msa0480480:CDS |
| AAGAGGTAGGGGAGGTACAA+AGG | 0.547461 | 3_3:+85757843 | Msa0480480:CDS |
| TAATCCATAGCCAGATTTCA+CGG | 0.548341 | 3_3:-85753589 | None:intergenic |
| ACCATAAGATTGTGATGGTA+CGG | 0.550660 | 3_3:-85755629 | None:intergenic |
| ACGGGCTGGGGATGAAATGA+AGG | 0.550737 | 3_3:-85755661 | None:intergenic |
| CCGGAAGATATTCAATGGGT+AGG | 0.552057 | 3_3:+85757733 | Msa0480480:CDS |
| ATCAAAATAGAATTCCTAGA+GGG | 0.552953 | 3_3:+85755017 | Msa0480480:CDS |
| TACAAGCAGAAGCTGATCCT+AGG | 0.553253 | 3_3:-85759126 | None:intergenic |
| AAAGTGAAAGAGAATGAGGA+AGG | 0.556604 | 3_3:-85753518 | None:intergenic |
| TTCATTTCATCCCCAGCCCG+TGG | 0.558407 | 3_3:+85755663 | Msa0480480:CDS |
| ACAGAAGAAGATGGCTGGTG+GGG | 0.563016 | 3_3:-85755691 | None:intergenic |
| AATCCATAGCCAGATTTCAC+GGG | 0.564228 | 3_3:-85753588 | None:intergenic |
| GTGAAAGAGAATGAGGAAGG+AGG | 0.567437 | 3_3:-85753515 | None:intergenic |
| TCTTCTTCTGTTGGAAAACG+TGG | 0.568821 | 3_3:+85755703 | Msa0480480:CDS |
| ATGTCCAGAACTCAGCACAC+TGG | 0.569046 | 3_3:-85755539 | None:intergenic |
| TTCAAGGAAGCAAAAGTCAC+GGG | 0.571010 | 3_3:+85759017 | Msa0480480:three_prime_UTR |
| GAGGTAGGGGAGGTACAAAG+GGG | 0.571827 | 3_3:+85757845 | Msa0480480:CDS |
| AGGCTTGCAGATCTTTCTGA+TGG | 0.572035 | 3_3:+85758269 | Msa0480480:CDS |
| CGTGGGATGAATAGGTCTGT+AGG | 0.575629 | 3_3:+85757796 | Msa0480480:CDS |
| AACAGAAGAAGATGGCTGGT+GGG | 0.578561 | 3_3:-85755692 | None:intergenic |
| GCATCAATTGATCCGCTCGT+TGG | 0.579774 | 3_3:+85756044 | Msa0480480:CDS |
| ATGATGTCATACGAAGGATA+AGG | 0.581095 | 3_3:+85755375 | Msa0480480:CDS |
| AGAACTAAGATTATCAAATG+AGG | 0.581607 | 3_3:+85755319 | Msa0480480:CDS |
| TGAGTTTCGATTTGTCGTGT+CGG | 0.583372 | 3_3:-85753426 | None:intergenic |
| TAGGTTCGATGTCATACCCC+AGG | 0.585808 | 3_3:+85755071 | Msa0480480:CDS |
| CTCTTATCGATGCAATTGCA+AGG | 0.587215 | 3_3:+85758249 | Msa0480480:CDS |
| TGGGGATGAAATGAAGGAGA+AGG | 0.587707 | 3_3:-85755655 | None:intergenic |
| ATGCAGGGCCAAGTATTACC+AGG | 0.589351 | 3_3:+85755918 | Msa0480480:intron |
| CAACAGAAGAAGATGGCTGG+TGG | 0.590040 | 3_3:-85755693 | None:intergenic |
| AATACCCTTCTTCGGGACCA+GGG | 0.590984 | 3_3:+85755958 | Msa0480480:CDS |
| GGCACAGGTGAGCTTGCTGA+GGG | 0.592343 | 3_3:+85756020 | Msa0480480:CDS |
| TACCATCACAATCTTATGGT+GGG | 0.594162 | 3_3:+85755632 | Msa0480480:CDS |
| TGGCACAGGTGAGCTTGCTG+AGG | 0.594365 | 3_3:+85756019 | Msa0480480:CDS |
| AGCTTACCACTACTATCGTA+AGG | 0.596626 | 3_3:-85753616 | None:intergenic |
| GCACAATCTGGTCTATGACA+TGG | 0.596902 | 3_3:+85756234 | Msa0480480:CDS |
| GGGAATGGGCGATCTGCAGT+AGG | 0.597765 | 3_3:+85755052 | Msa0480480:CDS |
| TACATCTACTGGATTGTAGT+CGG | 0.599461 | 3_3:-85756123 | None:intergenic |
| TTCCAGGAGCTGGAAGAGGT+AGG | 0.602194 | 3_3:+85757830 | Msa0480480:CDS |
| GCAAGAAAGTACGAACAAGA+TGG | 0.604041 | 3_3:+85756066 | Msa0480480:CDS |
| TATACGCGTCCTGCTCAAGT+TGG | 0.614385 | 3_3:-85755129 | None:intergenic |
| ATTCAAGGAAGCAAAAGTCA+CGG | 0.617397 | 3_3:+85759016 | Msa0480480:three_prime_UTR |
| TCAAGCTGATGCCATTACTT+GGG | 0.618960 | 3_3:+85755177 | Msa0480480:CDS |
| TTGAGGGTAAGATTTGACCT+AGG | 0.621339 | 3_3:+85759109 | Msa0480480:three_prime_UTR |
| AGATATTCAATGGGTAGGGG+AGG | 0.622945 | 3_3:+85757738 | Msa0480480:CDS |
| GTTGTAAAATGGGGAAAAGG+AGG | 0.628388 | 3_3:+85758992 | Msa0480480:three_prime_UTR |
| AAGCGAAGTACAGAGATCGA+AGG | 0.629562 | 3_3:-85753565 | None:intergenic |
| AATCAATGGATCGAGAATGA+CGG | 0.632089 | 3_3:+85758960 | Msa0480480:CDS |
| GGAAGATATTCAATGGGTAG+GGG | 0.632331 | 3_3:+85757735 | Msa0480480:CDS |
| GGAGCTGGAAGAGGTAGGGG+AGG | 0.633167 | 3_3:+85757835 | Msa0480480:CDS |
| AACACCTACGTTGTAAAATG+GGG | 0.637293 | 3_3:+85758983 | Msa0480480:three_prime_UTR |
| ATACCCTTCTTCGGGACCAG+GGG | 0.638170 | 3_3:+85755959 | Msa0480480:CDS |
| GGACCTGTTCCAGGAACTAA+GGG | 0.641860 | 3_3:+85755724 | Msa0480480:CDS |
| CAATTTCACCGTACATCCTG+GGG | 0.645515 | 3_3:-85755087 | None:intergenic |
| GGCCCACCATAAGATTGTGA+TGG | 0.650903 | 3_3:-85755634 | None:intergenic |
| TAAGATTGTGATGGTACGGA+CGG | 0.655045 | 3_3:-85755625 | None:intergenic |
| TACCCTTCTTCGGGACCAGG+GGG | 0.660578 | 3_3:+85755960 | Msa0480480:CDS |
| TACGAACCTTACGATAGTAG+TGG | 0.662698 | 3_3:+85753610 | Msa0480480:CDS |
| TGACATCATCTGCATTAACA+CGG | 0.665820 | 3_3:-85755361 | None:intergenic |
| GGAATGGGTTAATCTGTCAG+AGG | 0.668396 | 3_3:+85756276 | Msa0480480:CDS |
| GTACCATCACAATCTTATGG+TGG | 0.670093 | 3_3:+85755631 | Msa0480480:CDS |
| TCAAAATAGAATTCCTAGAG+GGG | 0.671510 | 3_3:+85755018 | Msa0480480:CDS |
| CATCAAAATAGAATTCCTAG+AGG | 0.671706 | 3_3:+85755016 | Msa0480480:CDS |
| GATGTACGGTGAAATTGACA+TGG | 0.674935 | 3_3:+85755093 | Msa0480480:CDS |
| AGGGAGTGGAGACAGACAGG+AGG | 0.700855 | 3_3:+85755508 | Msa0480480:intron |
| ATGCAGATGATGTCATACGA+AGG | 0.702583 | 3_3:+85755369 | Msa0480480:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTCAATATTATTTCTA+GGG | - | chr3_3:85753357-85753376 | None:intergenic | 10.0% |
| !!! | TTTTTTTCAATATTATTTCT+AGG | - | chr3_3:85753358-85753377 | None:intergenic | 10.0% |
| !! | TTAAAAAAGATTGAAAATTT+AGG | - | chr3_3:85753681-85753700 | None:intergenic | 10.0% |
| !!! | AAATTTTCAATCTTTTTTAA+TGG | + | chr3_3:85753681-85753700 | Msa0480480:intron | 10.0% |
| !!! | AATTTTCAATCTTTTTTAAT+GGG | + | chr3_3:85753682-85753701 | Msa0480480:intron | 10.0% |
| !! | TTATATACATATAAATTCAT+TGG | + | chr3_3:85754952-85754971 | Msa0480480:intron | 10.0% |
| !!! | TTATTTTGAAATTTTTAATC+AGG | + | chr3_3:85755228-85755247 | Msa0480480:intron | 10.0% |
| !!! | ATTTTATAACATGTTAAATT+AGG | + | chr3_3:85757265-85757284 | Msa0480480:intron | 10.0% |
| !!! | AATTACATATTATTTTTACA+TGG | - | chr3_3:85757511-85757530 | None:intergenic | 10.0% |
| !!! | ATGGAAAATATTTAAATTTT+TGG | + | chr3_3:85758020-85758039 | Msa0480480:intron | 10.0% |
| !!! | TGGAAAATATTTAAATTTTT+GGG | + | chr3_3:85758021-85758040 | Msa0480480:intron | 10.0% |
| !! | AAATTAAAATTAAAATGCTA+TGG | + | chr3_3:85758378-85758397 | Msa0480480:intron | 10.0% |
| !! | AAAAATAAGAAAAGAAAAGA+AGG | + | chr3_3:85753373-85753392 | Msa0480480:five_prime_UTR | 15.0% |
| !!! | TTGTTTTGATTGATTTAATT+AGG | + | chr3_3:85753738-85753757 | Msa0480480:intron | 15.0% |
| !!! | TGTTTTGATTGATTTAATTA+GGG | + | chr3_3:85753739-85753758 | Msa0480480:intron | 15.0% |
| !!! | TGAAGTATTTTTTTTTTCTA+TGG | + | chr3_3:85754017-85754036 | Msa0480480:intron | 15.0% |
| !! | TCTAATGTAATAATTTCTTT+AGG | + | chr3_3:85756846-85756865 | Msa0480480:intron | 15.0% |
| !!! | GCATTTTAATTTTAATTTAG+AGG | - | chr3_3:85758376-85758395 | None:intergenic | 15.0% |
| !!! | TTGGTAATAATTATTTATTG+AGG | + | chr3_3:85759092-85759111 | Msa0480480:three_prime_UTR | 15.0% |
| !! | TGGTAATAATTATTTATTGA+GGG | + | chr3_3:85759093-85759112 | Msa0480480:three_prime_UTR | 15.0% |
| !! | TAATTTAATACAGCAAATAT+AGG | - | chr3_3:85759179-85759198 | None:intergenic | 15.0% |
| !! | TGAAAATTTAGGAATAATGA+GGG | - | chr3_3:85753670-85753689 | None:intergenic | 20.0% |
| !! | TTGAAAATTTAGGAATAATG+AGG | - | chr3_3:85753671-85753690 | None:intergenic | 20.0% |
| !!! | TCTTTCAATTTTAGGATTTA+GGG | + | chr3_3:85753707-85753726 | Msa0480480:intron | 20.0% |
| !!! | ATTAGGGTAAAATTTTCAAT+TGG | + | chr3_3:85753755-85753774 | Msa0480480:intron | 20.0% |
| !! | TAGCATAAAACTACTAATTT+GGG | - | chr3_3:85753783-85753802 | None:intergenic | 20.0% |
| !! | ATAGCATAAAACTACTAATT+TGG | - | chr3_3:85753784-85753803 | None:intergenic | 20.0% |
| !! | ATTACACATACTACATAAAA+CGG | - | chr3_3:85753833-85753852 | None:intergenic | 20.0% |
| !!! | TTTTATGTAGTATGTGTAAT+TGG | + | chr3_3:85753833-85753852 | Msa0480480:intron | 20.0% |
| !!! | TTAAGAGTGTGATTAAATTA+TGG | + | chr3_3:85753864-85753883 | Msa0480480:intron | 20.0% |
| !!! | TTGAAAATTTGAAATTGCTT+TGG | + | chr3_3:85754243-85754262 | Msa0480480:intron | 20.0% |
| !! | TGTTATCTTGAATAATTTGA+TGG | + | chr3_3:85754307-85754326 | Msa0480480:intron | 20.0% |
| !! | TCTGATAAAATTGTAAAACT+TGG | + | chr3_3:85755398-85755417 | Msa0480480:intron | 20.0% |
| !!! | GTTGTTAATCAACATTTTAT+TGG | + | chr3_3:85755474-85755493 | Msa0480480:intron | 20.0% |
| !!! | TTTTATTGGATGTTGATTTA+AGG | + | chr3_3:85755488-85755507 | Msa0480480:intron | 20.0% |
| !!! | TTTATTGGATGTTGATTTAA+GGG | + | chr3_3:85755489-85755508 | Msa0480480:intron | 20.0% |
| !!! | TCTTTTCCATCTTTAAATTA+AGG | + | chr3_3:85756694-85756713 | Msa0480480:intron | 20.0% |
| !!! | CTTTTCCATCTTTAAATTAA+GGG | + | chr3_3:85756695-85756714 | Msa0480480:intron | 20.0% |
| !! | ATCTTTATTAGAAAGAACTA+GGG | - | chr3_3:85757021-85757040 | None:intergenic | 20.0% |
| !! | TATCTTTATTAGAAAGAACT+AGG | - | chr3_3:85757022-85757041 | None:intergenic | 20.0% |
| !! | TAACATGTTAAATTAGGATT+TGG | + | chr3_3:85757271-85757290 | Msa0480480:intron | 20.0% |
| !! | TATAAAAAAAATTCAGAACG+AGG | - | chr3_3:85757319-85757338 | None:intergenic | 20.0% |
| !! | TAAATGTTATTGAACAATCA+AGG | - | chr3_3:85757632-85757651 | None:intergenic | 20.0% |
| !! | AAGAACATAAGATAAATTAG+CGG | - | chr3_3:85758174-85758193 | None:intergenic | 20.0% |
| !!! | TAAATAGAAGTACAATAGTT+TGG | + | chr3_3:85758570-85758589 | Msa0480480:intron | 20.0% |
| !! | ATAGACAAAAGTGAAAAATA+TGG | - | chr3_3:85758750-85758769 | None:intergenic | 20.0% |
| !! | TTTAAAAAAGTAGTGAATAC+TGG | - | chr3_3:85758797-85758816 | None:intergenic | 20.0% |
| !! | TATCTTATTGTTTATACAGA+TGG | + | chr3_3:85758911-85758930 | Msa0480480:intron | 20.0% |
| !! | ATCTTATTGTTTATACAGAT+GGG | + | chr3_3:85758912-85758931 | Msa0480480:intron | 20.0% |
| !!! | TTCAATATTATTTCTAGGGA+GGG | - | chr3_3:85753353-85753372 | None:intergenic | 25.0% |
| !!! | TTTCAATATTATTTCTAGGG+AGG | - | chr3_3:85753354-85753373 | None:intergenic | 25.0% |
| !!! | CTCTTTCAATTTTAGGATTT+AGG | + | chr3_3:85753706-85753725 | Msa0480480:intron | 25.0% |
| !!! | AATTTTAGGATTTAGGGTTA+GGG | + | chr3_3:85753713-85753732 | Msa0480480:intron | 25.0% |
| !!! | GTAGTTTTATGCTATGTTTA+AGG | + | chr3_3:85753789-85753808 | Msa0480480:intron | 25.0% |
| !!! | TTTTGATTGTTATTGAACAC+AGG | + | chr3_3:85753899-85753918 | Msa0480480:intron | 25.0% |
| !! | TTTGATTGTTATTGAACACA+GGG | + | chr3_3:85753900-85753919 | Msa0480480:intron | 25.0% |
| !! | TTCAGTTTCATAGTTTTCAT+TGG | + | chr3_3:85753941-85753960 | Msa0480480:intron | 25.0% |
| ! | TAATCATAACAACTAGTTGA+CGG | - | chr3_3:85754286-85754305 | None:intergenic | 25.0% |
| ! | AATCAACAAATTCACAACAT+GGG | - | chr3_3:85754672-85754691 | None:intergenic | 25.0% |
| ! | AAATCAACAAATTCACAACA+TGG | - | chr3_3:85754673-85754692 | None:intergenic | 25.0% |
| ! | AGCATTTACTAACTATACAA+AGG | - | chr3_3:85754769-85754788 | None:intergenic | 25.0% |
| ! | TATTTCAAGGATTTATAGTC+TGG | + | chr3_3:85754832-85754851 | Msa0480480:intron | 25.0% |
| ! | ATCAAAATAGAATTCCTAGA+GGG | + | chr3_3:85755017-85755036 | Msa0480480:CDS | 25.0% |
| !! | AAACAACATGTATTTTCTTC+AGG | + | chr3_3:85755265-85755284 | Msa0480480:intron | 25.0% |
| ! | AGAACTAAGATTATCAAATG+AGG | + | chr3_3:85755319-85755338 | Msa0480480:CDS | 25.0% |
| ! | ATTATCAAATGAGGAACATA+GGG | + | chr3_3:85755328-85755347 | Msa0480480:CDS | 25.0% |
| !!! | ATTTTTTAAGCAGCTATGAA+GGG | - | chr3_3:85755838-85755857 | None:intergenic | 25.0% |
| !!! | AATTTTTTAAGCAGCTATGA+AGG | - | chr3_3:85755839-85755858 | None:intergenic | 25.0% |
| ! | CAACACTATTTCATTTACTT+TGG | + | chr3_3:85755886-85755905 | Msa0480480:intron | 25.0% |
| ! | CAAATCTTAAACTGATTAAG+TGG | - | chr3_3:85756156-85756175 | None:intergenic | 25.0% |
| ! | TGTAAATGAATCATTGGAAT+GGG | + | chr3_3:85756261-85756280 | Msa0480480:CDS | 25.0% |
| ! | GAATGTCTAAAGAAATATGT+TGG | + | chr3_3:85756664-85756683 | Msa0480480:intron | 25.0% |
| ! | TCTAACCCTTAATTTAAAGA+TGG | - | chr3_3:85756703-85756722 | None:intergenic | 25.0% |
| !!! | AGATGCTAAAAATGTTTTGA+AGG | + | chr3_3:85757190-85757209 | Msa0480480:intron | 25.0% |
| !!! | AATGTTTTGAAGGAAACTAT+TGG | + | chr3_3:85757200-85757219 | Msa0480480:intron | 25.0% |
| !!! | ATGTTTTGAAGGAAACTATT+GGG | + | chr3_3:85757201-85757220 | Msa0480480:intron | 25.0% |
| ! | TTAAATAACAACCACAATTC+AGG | - | chr3_3:85757573-85757592 | None:intergenic | 25.0% |
| ! | TTACAAGACTGTATCTAATT+AGG | - | chr3_3:85757701-85757720 | None:intergenic | 25.0% |
| !!! | TGATGGCAATAAATCTTTTT+TGG | - | chr3_3:85757875-85757894 | None:intergenic | 25.0% |
| !! | GAGATTGTTTAATCTTTTCA+TGG | + | chr3_3:85758001-85758020 | Msa0480480:intron | 25.0% |
| !! | CTTTACCTTCAATATTTTCT+TGG | - | chr3_3:85758110-85758129 | None:intergenic | 25.0% |
| ! | CAAGAAAATATTGAAGGTAA+AGG | + | chr3_3:85758108-85758127 | Msa0480480:intron | 25.0% |
| ! | CAATTTAATGAATTAACTGC+AGG | + | chr3_3:85758214-85758233 | Msa0480480:intron | 25.0% |
| ! | AATTAAAATGCTATGGAGTA+TGG | + | chr3_3:85758385-85758404 | Msa0480480:intron | 25.0% |
| !! | TACAATAGTTTGGAATAACA+AGG | + | chr3_3:85758580-85758599 | Msa0480480:intron | 25.0% |
| ! | ATATTAAATCGTAGGATGAT+TGG | - | chr3_3:85758710-85758729 | None:intergenic | 25.0% |
| ! | TTTGTCTATTTAAACAACCT+TGG | + | chr3_3:85758761-85758780 | Msa0480480:intron | 25.0% |
| ! | ATCAATTATATTCAGTGAAG+TGG | + | chr3_3:85758828-85758847 | Msa0480480:intron | 25.0% |
| ! | TCTTATTGTTTATACAGATG+GGG | + | chr3_3:85758913-85758932 | Msa0480480:intron | 25.0% |
| ! | TTGATTTAACATGTGAGAAA+TGG | - | chr3_3:85758946-85758965 | None:intergenic | 25.0% |
| ! | TTTCTCACATGTTAAATCAA+TGG | + | chr3_3:85758946-85758965 | Msa0480480:CDS | 25.0% |
| ! | AGGATGACAATTATGTAATT+TGG | + | chr3_3:85759073-85759092 | Msa0480480:three_prime_UTR | 25.0% |
| !! | GTATAAAAAGAGTATGATAG+TGG | + | chr3_3:85759146-85759165 | Msa0480480:three_prime_UTR | 25.0% |
| ! | AATGGGTCTCTTTCAATTTT+AGG | + | chr3_3:85753699-85753718 | Msa0480480:intron | 30.0% |
| !!! | CAATTTTAGGATTTAGGGTT+AGG | + | chr3_3:85753712-85753731 | Msa0480480:intron | 30.0% |
| ! | TTGATTGTTATTGAACACAG+GGG | + | chr3_3:85753901-85753920 | Msa0480480:intron | 30.0% |
| !!! | GTTCTGTTTTGTTTAGCAAA+TGG | + | chr3_3:85754056-85754075 | Msa0480480:intron | 30.0% |
| TATAGTTCAAAATACGCGTT+AGG | - | chr3_3:85754114-85754133 | None:intergenic | 30.0% | |
| CTTTCTTTACCTTAGCAATA+AGG | + | chr3_3:85754342-85754361 | Msa0480480:intron | 30.0% | |
| ! | ATTGTCTATCCATTTGTTGA+CGG | + | chr3_3:85754495-85754514 | Msa0480480:intron | 30.0% |
| CACTTTCAAATATCCTCAAA+TGG | + | chr3_3:85754549-85754568 | Msa0480480:intron | 30.0% | |
| TTAGCCAATATTGTGTCAAA+CGG | - | chr3_3:85754592-85754611 | None:intergenic | 30.0% | |
| GATAAGAAATACTGCAGTTA+AGG | - | chr3_3:85754716-85754735 | None:intergenic | 30.0% | |
| ! | TCTGGTTGATGTATATTTCA+AGG | + | chr3_3:85754819-85754838 | Msa0480480:intron | 30.0% |
| ! | TTGTTGTTGTTGTTATAGTC+CGG | + | chr3_3:85754910-85754929 | Msa0480480:intron | 30.0% |
| GTATAATAACAAAGTCAGTC+CGG | - | chr3_3:85754932-85754951 | None:intergenic | 30.0% | |
| !!! | ATTCTATTTTGATGTGTTGG+TGG | - | chr3_3:85755010-85755029 | None:intergenic | 30.0% |
| !!! | GGAATTCTATTTTGATGTGT+TGG | - | chr3_3:85755013-85755032 | None:intergenic | 30.0% |
| CATCAAAATAGAATTCCTAG+AGG | + | chr3_3:85755016-85755035 | Msa0480480:CDS | 30.0% | |
| TCAAAATAGAATTCCTAGAG+GGG | + | chr3_3:85755018-85755037 | Msa0480480:CDS | 30.0% | |
| AAGAAAATGTACCCAAGTAA+TGG | - | chr3_3:85755191-85755210 | None:intergenic | 30.0% | |
| GATTATCAAATGAGGAACAT+AGG | + | chr3_3:85755327-85755346 | Msa0480480:CDS | 30.0% | |
| TGTAAGTAAACATAGAAGTC+CGG | + | chr3_3:85755762-85755781 | Msa0480480:intron | 30.0% | |
| !!! | TTTTTTAAGCAGCTATGAAG+GGG | - | chr3_3:85755837-85755856 | None:intergenic | 30.0% |
| !! | TGAAATAGTGTTGCTTATGT+AGG | - | chr3_3:85755879-85755898 | None:intergenic | 30.0% |
| !!! | ACTTTGGTTCTTTTATATGC+AGG | + | chr3_3:85755902-85755921 | Msa0480480:intron | 30.0% |
| !!! | CTTTGGTTCTTTTATATGCA+GGG | + | chr3_3:85755903-85755922 | Msa0480480:intron | 30.0% |
| AATAAAGCAATACCCTTCTT+CGG | + | chr3_3:85755950-85755969 | Msa0480480:CDS | 30.0% | |
| AGTACCTAATAGAGTTACTT+CGG | + | chr3_3:85755992-85756011 | Msa0480480:CDS | 30.0% | |
| TCATAGAAGTTATTGTCATC+AGG | - | chr3_3:85756092-85756111 | None:intergenic | 30.0% | |
| GTGTAAATGAATCATTGGAA+TGG | + | chr3_3:85756260-85756279 | Msa0480480:CDS | 30.0% | |
| !!! | CTTTTAGTTTCAATTTCGCA+AGG | - | chr3_3:85756398-85756417 | None:intergenic | 30.0% |
| GATCCAAATCCTTTCATAAT+TGG | - | chr3_3:85756744-85756763 | None:intergenic | 30.0% | |
| AATCCTAGGATTCATATGAA+TGG | + | chr3_3:85756788-85756807 | Msa0480480:intron | 30.0% | |
| TTTCCATTCATATGAATCCT+AGG | - | chr3_3:85756794-85756813 | None:intergenic | 30.0% | |
| !! | ATGAATGGAAAAAGTACTAC+TGG | + | chr3_3:85756803-85756822 | Msa0480480:intron | 30.0% |
| !! | TGAATGGAAAAAGTACTACT+GGG | + | chr3_3:85756804-85756823 | Msa0480480:intron | 30.0% |
| TATAGATGGCAGAATTTCAA+GGG | - | chr3_3:85756979-85756998 | None:intergenic | 30.0% | |
| GGTAACTTTCAGCATAAATT+CGG | + | chr3_3:85757133-85757152 | Msa0480480:intron | 30.0% | |
| TCATGAATGAATGCATAATG+TGG | + | chr3_3:85757448-85757467 | Msa0480480:intron | 30.0% | |
| GTTAAAGAGGTAACTGAAAA+CGG | + | chr3_3:85757955-85757974 | Msa0480480:intron | 30.0% | |
| !!! | AAATTTTTGGGTAACTTGTC+AGG | + | chr3_3:85758033-85758052 | Msa0480480:intron | 30.0% |
| TTCTCAATTTCATGTACATC+AGG | - | chr3_3:85758085-85758104 | None:intergenic | 30.0% | |
| GAAAGCCAAGAAAATATTGA+AGG | + | chr3_3:85758102-85758121 | Msa0480480:CDS | 30.0% | |
| TTCAAAGTGAACTAGCTAAA+TGG | - | chr3_3:85758502-85758521 | None:intergenic | 30.0% | |
| TTTAGCTAGTTCACTTTGAA+AGG | + | chr3_3:85758502-85758521 | Msa0480480:intron | 30.0% | |
| !! | GATTTTCACTGATTATTGCT+TGG | + | chr3_3:85758607-85758626 | Msa0480480:intron | 30.0% |
| TGCTTGGTATATTAAATCGT+AGG | - | chr3_3:85758718-85758737 | None:intergenic | 30.0% | |
| TACGATTTAATATACCAAGC+AGG | + | chr3_3:85758717-85758736 | Msa0480480:intron | 30.0% | |
| ACGATTTAATATACCAAGCA+GGG | + | chr3_3:85758718-85758737 | Msa0480480:intron | 30.0% | |
| TAGTGAATACTGGATACTTA+AGG | - | chr3_3:85758787-85758806 | None:intergenic | 30.0% | |
| TTTATACACAGAATCAAGTG+TGG | - | chr3_3:85758876-85758895 | None:intergenic | 30.0% | |
| CTTATTGTTTATACAGATGG+GGG | + | chr3_3:85758914-85758933 | Msa0480480:intron | 30.0% | |
| TCTCTTGTATTCTATCAGAT+AGG | + | chr3_3:85759053-85759072 | Msa0480480:three_prime_UTR | 30.0% | |
| ACACCAAATCTTAATCATCA+TGG | + | chr3_3:85759250-85759269 | Msa0480480:three_prime_UTR | 30.0% | |
| CACCAAATCTTAATCATCAT+GGG | + | chr3_3:85759251-85759270 | Msa0480480:three_prime_UTR | 30.0% | |
| TACCCATGATGATTAAGATT+TGG | - | chr3_3:85759256-85759275 | None:intergenic | 30.0% | |
| ATGAACGAATCGAAGATCTT+AGG | - | chr3_3:85753468-85753487 | None:intergenic | 35.0% | |
| AAAGTGAAAGAGAATGAGGA+AGG | - | chr3_3:85753521-85753540 | None:intergenic | 35.0% | |
| TAATCCATAGCCAGATTTCA+CGG | - | chr3_3:85753592-85753611 | None:intergenic | 35.0% | |
| ! | TGATTGTTATTGAACACAGG+GGG | + | chr3_3:85753902-85753921 | Msa0480480:intron | 35.0% |
| CATAATCAAGTTCATGGAAC+TGG | - | chr3_3:85754148-85754167 | None:intergenic | 35.0% | |
| AACCGAATAAACCAGTTTAG+CGG | - | chr3_3:85754171-85754190 | None:intergenic | 35.0% | |
| ! | TATTCGGTTGGTATACTAGT+TGG | + | chr3_3:85754182-85754201 | Msa0480480:intron | 35.0% |
| ! | ATTCGGTTGGTATACTAGTT+GGG | + | chr3_3:85754183-85754202 | Msa0480480:intron | 35.0% |
| ! | TGAATAATTTGATGGCCTCT+TGG | + | chr3_3:85754315-85754334 | Msa0480480:intron | 35.0% |
| GGTAAAGAAAGAAAACCAAG+AGG | - | chr3_3:85754333-85754352 | None:intergenic | 35.0% | |
| ! | TTGTCTATCCATTTGTTGAC+GGG | + | chr3_3:85754496-85754515 | Msa0480480:intron | 35.0% |
| AACAAAAAGGTAGCCATTTG+AGG | - | chr3_3:85754565-85754584 | None:intergenic | 35.0% | |
| GTCAAACGGGAAAAACAAAA+AGG | - | chr3_3:85754578-85754597 | None:intergenic | 35.0% | |
| TTTCCCGTTTGACACAATAT+TGG | + | chr3_3:85754585-85754604 | Msa0480480:intron | 35.0% | |
| TAGCCAATATTGTGTCAAAC+GGG | - | chr3_3:85754591-85754610 | None:intergenic | 35.0% | |
| TATGTCAGTGTTACACTGAA+TGG | - | chr3_3:85754628-85754647 | None:intergenic | 35.0% | |
| ! | CAGATTTTACTAAATGCAGC+AGG | - | chr3_3:85754803-85754822 | None:intergenic | 35.0% |
| CTGCTGCATTTAGTAAAATC+TGG | + | chr3_3:85754801-85754820 | Msa0480480:intron | 35.0% | |
| TCATTGGATGTAATGATTGC+AGG | + | chr3_3:85754968-85754987 | Msa0480480:intron | 35.0% | |
| ! | CATGTATTTTCTTCAGGAGA+AGG | + | chr3_3:85755271-85755290 | Msa0480480:intron | 35.0% |
| TGACATCATCTGCATTAACA+CGG | - | chr3_3:85755364-85755383 | None:intergenic | 35.0% | |
| ATGATGTCATACGAAGGATA+AGG | + | chr3_3:85755375-85755394 | Msa0480480:CDS | 35.0% | |
| ACCATAAGATTGTGATGGTA+CGG | - | chr3_3:85755632-85755651 | None:intergenic | 35.0% | |
| TACCATCACAATCTTATGGT+GGG | + | chr3_3:85755632-85755651 | Msa0480480:CDS | 35.0% | |
| GGACTTCTATGTTTACTTAC+AGG | - | chr3_3:85755763-85755782 | None:intergenic | 35.0% | |
| !! | GAAGGGTATTGCTTTATTGA+AGG | - | chr3_3:85755948-85755967 | None:intergenic | 35.0% |
| ATAAAGCAATACCCTTCTTC+GGG | + | chr3_3:85755951-85755970 | Msa0480480:CDS | 35.0% | |
| GTACCTAATAGAGTTACTTC+GGG | + | chr3_3:85755993-85756012 | Msa0480480:CDS | 35.0% | |
| TACATCTACTGGATTGTAGT+CGG | - | chr3_3:85756126-85756145 | None:intergenic | 35.0% | |
| ! | GGGAAGTGTAAATGAATCAT+TGG | + | chr3_3:85756255-85756274 | Msa0480480:CDS | 35.0% |
| AGTTTCAATTTCGCAAGGTT+TGG | - | chr3_3:85756393-85756412 | None:intergenic | 35.0% | |
| GTTAGATTTCCAATGTGTGT+TGG | + | chr3_3:85756717-85756736 | Msa0480480:intron | 35.0% | |
| ATAATTGGACCAACACACAT+TGG | - | chr3_3:85756729-85756748 | None:intergenic | 35.0% | |
| ! | TGTGTTGGTCCAATTATGAA+AGG | + | chr3_3:85756732-85756751 | Msa0480480:intron | 35.0% |
| GGTCCAATTATGAAAGGATT+TGG | + | chr3_3:85756738-85756757 | Msa0480480:intron | 35.0% | |
| ATTTGGATCTCATAAGCATG+TGG | + | chr3_3:85756755-85756774 | Msa0480480:intron | 35.0% | |
| TGAATCCTAGGATTTAACTG+AGG | - | chr3_3:85756782-85756801 | None:intergenic | 35.0% | |
| TTTGAGAGAGTTAAGACCTT+TGG | + | chr3_3:85756934-85756953 | Msa0480480:intron | 35.0% | |
| TTGAGAGAGTTAAGACCTTT+GGG | + | chr3_3:85756935-85756954 | Msa0480480:intron | 35.0% | |
| GTATAGATGGCAGAATTTCA+AGG | - | chr3_3:85756980-85756999 | None:intergenic | 35.0% | |
| TGCCATCTATACTCTATTGA+GGG | + | chr3_3:85756988-85757007 | Msa0480480:intron | 35.0% | |
| TTCCCTCAATAGAGTATAGA+TGG | - | chr3_3:85756993-85757012 | None:intergenic | 35.0% | |
| AAGTTTCTATCACGTATCTC+AGG | + | chr3_3:85757043-85757062 | Msa0480480:intron | 35.0% | |
| ACCAAATTGAGATGTCAAGT+TGG | + | chr3_3:85757393-85757412 | Msa0480480:intron | 35.0% | |
| CTTTCAGTAATCCTGAATTG+TGG | + | chr3_3:85757559-85757578 | Msa0480480:intron | 35.0% | |
| GATTTATTGCCATCACAGAA+TGG | + | chr3_3:85757880-85757899 | Msa0480480:CDS | 35.0% | |
| ACAGAATGGAATCGGAAAAA+AGG | + | chr3_3:85757894-85757913 | Msa0480480:CDS | 35.0% | |
| CAGTAAAATAAATGGCAGAC+TGG | - | chr3_3:85758147-85758166 | None:intergenic | 35.0% | |
| CAAATGAGTTGCAAGTGATA+CGG | + | chr3_3:85758454-85758473 | Msa0480480:intron | 35.0% | |
| CGATTTAATATACCAAGCAG+GGG | + | chr3_3:85758719-85758738 | Msa0480480:intron | 35.0% | |
| AATCAATGGATCGAGAATGA+CGG | + | chr3_3:85758960-85758979 | Msa0480480:CDS | 35.0% | |
| GAACACCTACGTTGTAAAAT+GGG | + | chr3_3:85758982-85759001 | Msa0480480:three_prime_UTR | 35.0% | |
| AACACCTACGTTGTAAAATG+GGG | + | chr3_3:85758983-85759002 | Msa0480480:three_prime_UTR | 35.0% | |
| ! | TTTTCCCCATTTTACAACGT+AGG | - | chr3_3:85758990-85759009 | None:intergenic | 35.0% |
| TACGTTGTAAAATGGGGAAA+AGG | + | chr3_3:85758989-85759008 | Msa0480480:three_prime_UTR | 35.0% | |
| ATTCAAGGAAGCAAAAGTCA+CGG | + | chr3_3:85759016-85759035 | Msa0480480:three_prime_UTR | 35.0% | |
| CACCATTTATTCACAAGACT+TGG | + | chr3_3:85759207-85759226 | Msa0480480:three_prime_UTR | 35.0% | |
| ! | CACCAAGTCTTGTGAATAAA+TGG | - | chr3_3:85759212-85759231 | None:intergenic | 35.0% |
| ! | TGAGTTTCGATTTGTCGTGT+CGG | - | chr3_3:85753429-85753448 | None:intergenic | 40.0% |
| GAGTAGAGGAACAATGATTG+AGG | - | chr3_3:85753496-85753515 | None:intergenic | 40.0% | |
| AGCGAAAGTGAAAGAGAATG+AGG | - | chr3_3:85753525-85753544 | None:intergenic | 40.0% | |
| AATCCATAGCCAGATTTCAC+GGG | - | chr3_3:85753591-85753610 | None:intergenic | 40.0% | |
| TACGAACCTTACGATAGTAG+TGG | + | chr3_3:85753610-85753629 | Msa0480480:CDS | 40.0% | |
| AGCTTACCACTACTATCGTA+AGG | - | chr3_3:85753619-85753638 | None:intergenic | 40.0% | |
| TAGCGGCATAATCAAGTTCA+TGG | - | chr3_3:85754154-85754173 | None:intergenic | 40.0% | |
| ACTTGATTATGCCGCTAAAC+TGG | + | chr3_3:85754157-85754176 | Msa0480480:intron | 40.0% | |
| ! | TGCCGCTAAACTGGTTTATT+CGG | + | chr3_3:85754166-85754185 | Msa0480480:intron | 40.0% |
| ! | GCTAAACTGGTTTATTCGGT+TGG | + | chr3_3:85754170-85754189 | Msa0480480:intron | 40.0% |
| TTGGTATACTAGTTGGGAAC+TGG | + | chr3_3:85754189-85754208 | Msa0480480:intron | 40.0% | |
| TGGTATACTAGTTGGGAACT+GGG | + | chr3_3:85754190-85754209 | Msa0480480:intron | 40.0% | |
| AACAACTAGTTGACGGTCTT+TGG | - | chr3_3:85754279-85754298 | None:intergenic | 40.0% | |
| AAAGTCGCACCTTATTGCTA+AGG | - | chr3_3:85754354-85754373 | None:intergenic | 40.0% | |
| ! | GCGACTTTTGTGAACTAGAA+AGG | + | chr3_3:85754366-85754385 | Msa0480480:intron | 40.0% |
| GGTGATATCGGACTCTATAT+TGG | + | chr3_3:85754431-85754450 | Msa0480480:intron | 40.0% | |
| ! | TGTCTATCCATTTGTTGACG+GGG | + | chr3_3:85754497-85754516 | Msa0480480:intron | 40.0% |
| CAGTGTTACACTGAATGGTA+GGG | - | chr3_3:85754623-85754642 | None:intergenic | 40.0% | |
| TCAGTGTTACACTGAATGGT+AGG | - | chr3_3:85754624-85754643 | None:intergenic | 40.0% | |
| TTGTTGCATTGAGTAGATCG+TGG | + | chr3_3:85754743-85754762 | Msa0480480:intron | 40.0% | |
| TCAATTTCACCGTACATCCT+GGG | - | chr3_3:85755091-85755110 | None:intergenic | 40.0% | |
| GATGTACGGTGAAATTGACA+TGG | + | chr3_3:85755093-85755112 | Msa0480480:CDS | 40.0% | |
| TCAAATTCACCAACTTGAGC+AGG | + | chr3_3:85755120-85755139 | Msa0480480:CDS | 40.0% | |
| TCAAGCTGATGCCATTACTT+GGG | + | chr3_3:85755177-85755196 | Msa0480480:CDS | 40.0% | |
| ATGCAGATGATGTCATACGA+AGG | + | chr3_3:85755369-85755388 | Msa0480480:CDS | 40.0% | |
| !! | TGGATGTTGATTTAAGGGAG+TGG | + | chr3_3:85755494-85755513 | Msa0480480:intron | 40.0% |
| TGCTTCTCGTAAGAAGCAAA+AGG | + | chr3_3:85755597-85755616 | Msa0480480:CDS | 40.0% | |
| TAAGATTGTGATGGTACGGA+CGG | - | chr3_3:85755628-85755647 | None:intergenic | 40.0% | |
| TCCGTACCATCACAATCTTA+TGG | + | chr3_3:85755628-85755647 | Msa0480480:CDS | 40.0% | |
| GTACCATCACAATCTTATGG+TGG | + | chr3_3:85755631-85755650 | Msa0480480:CDS | 40.0% | |
| ! | CGTTTTCCAACAGAAGAAGA+TGG | - | chr3_3:85755703-85755722 | None:intergenic | 40.0% |
| TCTTCTTCTGTTGGAAAACG+TGG | + | chr3_3:85755703-85755722 | Msa0480480:CDS | 40.0% | |
| GAGAGGAAGAACAATGTAAC+CGG | - | chr3_3:85755784-85755803 | None:intergenic | 40.0% | |
| CACTGCAGATAAACTAAGAG+AGG | - | chr3_3:85755801-85755820 | None:intergenic | 40.0% | |
| TAGTTTATCTGCAGTGAGCT+TGG | + | chr3_3:85755805-85755824 | Msa0480480:intron | 40.0% | |
| GCTTATGTAGGCTTGAATAG+TGG | - | chr3_3:85755867-85755886 | None:intergenic | 40.0% | |
| GTACCCGAAGTAACTCTATT+AGG | - | chr3_3:85755999-85756018 | None:intergenic | 40.0% | |
| AATAGAGTTACTTCGGGTAC+TGG | + | chr3_3:85755999-85756018 | Msa0480480:CDS | 40.0% | |
| ! | GCAAGAAAGTACGAACAAGA+TGG | + | chr3_3:85756066-85756085 | Msa0480480:CDS | 40.0% |
| GTGGATGTAAGTACATCTAC+TGG | - | chr3_3:85756137-85756156 | None:intergenic | 40.0% | |
| CACAATCTGGTCTATGACAT+GGG | + | chr3_3:85756235-85756254 | Msa0480480:CDS | 40.0% | |
| ! | GTCTTTGAGTAGAGTTCTGA+AGG | + | chr3_3:85756592-85756611 | Msa0480480:intron | 40.0% |
| GCTAACATCACTAACTACAG+GGG | - | chr3_3:85756874-85756893 | None:intergenic | 40.0% | |
| GGCTAACATCACTAACTACA+GGG | - | chr3_3:85756875-85756894 | None:intergenic | 40.0% | |
| AGGCTAACATCACTAACTAC+AGG | - | chr3_3:85756876-85756895 | None:intergenic | 40.0% | |
| ! | TAGTTAGTGATGTTAGCCTG+TGG | + | chr3_3:85756877-85756896 | Msa0480480:intron | 40.0% |
| AGTTAAGACCTTTGGGCATT+AGG | + | chr3_3:85756942-85756961 | Msa0480480:intron | 40.0% | |
| CTGCCATCTATACTCTATTG+AGG | + | chr3_3:85756987-85757006 | Msa0480480:intron | 40.0% | |
| AGATCTGTCTCTTACCTACT+GGG | + | chr3_3:85757066-85757085 | Msa0480480:intron | 40.0% | |
| !!! | ATCCCAGCCCACATTTTTTT+GGG | - | chr3_3:85757107-85757126 | None:intergenic | 40.0% |
| GCCAACTTGACATCTCAATT+TGG | - | chr3_3:85757397-85757416 | None:intergenic | 40.0% | |
| ATCAAGGTACACGAGAATAG+CGG | - | chr3_3:85757616-85757635 | None:intergenic | 40.0% | |
| GACTGTATCTAATTAGGTGC+TGG | - | chr3_3:85757695-85757714 | None:intergenic | 40.0% | |
| TCTCTCCGGAAGATATTCAA+TGG | + | chr3_3:85757728-85757747 | Msa0480480:CDS | 40.0% | |
| CTCTCCGGAAGATATTCAAT+GGG | + | chr3_3:85757729-85757748 | Msa0480480:CDS | 40.0% | |
| CCTACCCATTGAATATCTTC+CGG | - | chr3_3:85757736-85757755 | None:intergenic | 40.0% | |
| CGGAAGATATTCAATGGGTA+GGG | + | chr3_3:85757734-85757753 | Msa0480480:CDS | 40.0% | |
| GGAAGATATTCAATGGGTAG+GGG | + | chr3_3:85757735-85757754 | Msa0480480:CDS | 40.0% | |
| ! | CTGGAATCAACCATCGTTTT+GGG | + | chr3_3:85757764-85757783 | Msa0480480:CDS | 40.0% |
| ! | TGGAATCAACCATCGTTTTG+GGG | + | chr3_3:85757765-85757784 | Msa0480480:CDS | 40.0% |
| TTGCCATCACAGAATGGAAT+CGG | + | chr3_3:85757886-85757905 | Msa0480480:CDS | 40.0% | |
| TTTCCGATTCCATTCTGTGA+TGG | - | chr3_3:85757892-85757911 | None:intergenic | 40.0% | |
| CACAGACACACTAGTTAAAG+AGG | + | chr3_3:85757942-85757961 | Msa0480480:CDS | 40.0% | |
| !!! | TTTTTGGGTAACTTGTCAGG+TGG | + | chr3_3:85758036-85758055 | Msa0480480:intron | 40.0% |
| GCGGCTAGCAGTAAAATAAA+TGG | - | chr3_3:85758155-85758174 | None:intergenic | 40.0% | |
| CTCTTATCGATGCAATTGCA+AGG | + | chr3_3:85758249-85758268 | Msa0480480:CDS | 40.0% | |
| ! | GATCTTTCTGATGGCGATAA+TGG | + | chr3_3:85758278-85758297 | Msa0480480:CDS | 40.0% |
| ATGGAGTATGGACTTCGTTT+AGG | + | chr3_3:85758397-85758416 | Msa0480480:intron | 40.0% | |
| AATTATGGCCACTGTTTCCA+CGG | - | chr3_3:85758667-85758686 | None:intergenic | 40.0% | |
| ! | GGGTGTAGTGGAACAAATTA+TGG | - | chr3_3:85758682-85758701 | None:intergenic | 40.0% |
| ATCGTAGGATGATTGGAAGT+GGG | - | chr3_3:85758703-85758722 | None:intergenic | 40.0% | |
| AATCGTAGGATGATTGGAAG+TGG | - | chr3_3:85758704-85758723 | None:intergenic | 40.0% | |
| ATACTGGATACTTAAGGCCA+AGG | - | chr3_3:85758781-85758800 | None:intergenic | 40.0% | |
| ATTGTTTATACAGATGGGGG+CGG | + | chr3_3:85758917-85758936 | Msa0480480:intron | 40.0% | |
| GGAACACCTACGTTGTAAAA+TGG | + | chr3_3:85758981-85759000 | Msa0480480:three_prime_UTR | 40.0% | |
| GTTGTAAAATGGGGAAAAGG+AGG | + | chr3_3:85758992-85759011 | Msa0480480:three_prime_UTR | 40.0% | |
| TTCAAGGAAGCAAAAGTCAC+GGG | + | chr3_3:85759017-85759036 | Msa0480480:three_prime_UTR | 40.0% | |
| TTGAGGGTAAGATTTGACCT+AGG | + | chr3_3:85759109-85759128 | Msa0480480:three_prime_UTR | 40.0% | |
| GGACTCGGAAACTGAGTTAT+TGG | - | chr3_3:85753408-85753427 | None:intergenic | 45.0% | |
| GTGAAAGAGAATGAGGAAGG+AGG | - | chr3_3:85753518-85753537 | None:intergenic | 45.0% | |
| AAGCGAAGTACAGAGATCGA+AGG | - | chr3_3:85753568-85753587 | None:intergenic | 45.0% | |
| TTATTGAACACAGGGGGCTA+TGG | + | chr3_3:85753908-85753927 | Msa0480480:intron | 45.0% | |
| CTGACCACTTCTGGTGATAT+CGG | + | chr3_3:85754419-85754438 | Msa0480480:intron | 45.0% | |
| ! | GTCTATCCATTTGTTGACGG+GGG | + | chr3_3:85754498-85754517 | Msa0480480:intron | 45.0% |
| CTAAATCCCCCGTCAACAAA+TGG | - | chr3_3:85754507-85754526 | None:intergenic | 45.0% | |
| ! | GGACTGACTTTGATCCATGT+AGG | + | chr3_3:85754853-85754872 | Msa0480480:intron | 45.0% |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr3_3:85754882-85754901 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr3_3:85754883-85754902 | None:intergenic | 45.0% |
| ATGTCATACCCCAGGATGTA+CGG | + | chr3_3:85755079-85755098 | Msa0480480:CDS | 45.0% | |
| CAATTTCACCGTACATCCTG+GGG | - | chr3_3:85755090-85755109 | None:intergenic | 45.0% | |
| GTCAATTTCACCGTACATCC+TGG | - | chr3_3:85755092-85755111 | None:intergenic | 45.0% | |
| ! | GGCATCAGCTTGAGCTTTAA+AGG | - | chr3_3:85755170-85755189 | None:intergenic | 45.0% |
| CTCAAGCTGATGCCATTACT+TGG | + | chr3_3:85755176-85755195 | Msa0480480:CDS | 45.0% | |
| GAGGAACATAGGGAACTTCT+AGG | + | chr3_3:85755338-85755357 | Msa0480480:CDS | 45.0% | |
| TTACGAGAAGCAGAGACTGT+TGG | - | chr3_3:85755589-85755608 | None:intergenic | 45.0% | |
| TGGGGATGAAATGAAGGAGA+AGG | - | chr3_3:85755658-85755677 | None:intergenic | 45.0% | |
| AACAGAAGAAGATGGCTGGT+GGG | - | chr3_3:85755695-85755714 | None:intergenic | 45.0% | |
| TTCCAACAGAAGAAGATGGC+TGG | - | chr3_3:85755699-85755718 | None:intergenic | 45.0% | |
| ! | AAGGTGCTCCTGGTAATACT+TGG | - | chr3_3:85755929-85755948 | None:intergenic | 45.0% |
| !! | TGCTTTATTGAAGGTGCTCC+TGG | - | chr3_3:85755939-85755958 | None:intergenic | 45.0% |
| TGCAGACGCTGAAAAGTTAG+AGG | - | chr3_3:85756217-85756236 | None:intergenic | 45.0% | |
| ! | TTTTCAGCGTCTGCACAATC+TGG | + | chr3_3:85756222-85756241 | Msa0480480:intron | 45.0% |
| GCACAATCTGGTCTATGACA+TGG | + | chr3_3:85756234-85756253 | Msa0480480:CDS | 45.0% | |
| !! | GGAATGGGTTAATCTGTCAG+AGG | + | chr3_3:85756276-85756295 | Msa0480480:CDS | 45.0% |
| TTTGAAGAGAGTCGCAACGT+GGG | - | chr3_3:85756357-85756376 | None:intergenic | 45.0% | |
| !! | TTTTGAAGAGAGTCGCAACG+TGG | - | chr3_3:85756358-85756377 | None:intergenic | 45.0% |
| GTGGTCCTCAGTTAAATCCT+AGG | + | chr3_3:85756774-85756793 | Msa0480480:intron | 45.0% | |
| ACTGGGATGTGCTCAAACTT+TGG | + | chr3_3:85756821-85756840 | Msa0480480:intron | 45.0% | |
| TATGTCCTTGTATGCACCAC+AGG | - | chr3_3:85756896-85756915 | None:intergenic | 45.0% | |
| GTGCATACAAGGACATAGAC+TGG | + | chr3_3:85756899-85756918 | Msa0480480:intron | 45.0% | |
| GAGATCTGTCTCTTACCTAC+TGG | + | chr3_3:85757065-85757084 | Msa0480480:intron | 45.0% | |
| CTACTGGGTAAAATGCTCCA+GGG | + | chr3_3:85757081-85757100 | Msa0480480:intron | 45.0% | |
| TCCAGGGCCCAAAAAAATGT+GGG | + | chr3_3:85757097-85757116 | Msa0480480:intron | 45.0% | |
| !!! | CATCCCAGCCCACATTTTTT+TGG | - | chr3_3:85757108-85757127 | None:intergenic | 45.0% |
| ATATCTTCCGGAGAGATCTG+CGG | - | chr3_3:85757724-85757743 | None:intergenic | 45.0% | |
| CCGGAAGATATTCAATGGGT+AGG | + | chr3_3:85757733-85757752 | Msa0480480:CDS | 45.0% | |
| AGATATTCAATGGGTAGGGG+AGG | + | chr3_3:85757738-85757757 | Msa0480480:CDS | 45.0% | |
| ! | CCAAAACGATGGTTGATTCC+AGG | - | chr3_3:85757766-85757785 | None:intergenic | 45.0% |
| ! | CCTGGAATCAACCATCGTTT+TGG | + | chr3_3:85757763-85757782 | Msa0480480:CDS | 45.0% |
| ! | GGAATCAACCATCGTTTTGG+GGG | + | chr3_3:85757766-85757785 | Msa0480480:CDS | 45.0% |
| TGGAATCGGAAAAAAGGCTC+TGG | + | chr3_3:85757900-85757919 | Msa0480480:CDS | 45.0% | |
| ! | GGTAACTTGTCAGGTGGAAA+GGG | + | chr3_3:85758042-85758061 | Msa0480480:intron | 45.0% |
| AGGCTTGCAGATCTTTCTGA+TGG | + | chr3_3:85758269-85758288 | Msa0480480:CDS | 45.0% | |
| TTCATCTTACTTCCATGCCG+TGG | + | chr3_3:85758647-85758666 | Msa0480480:intron | 45.0% | |
| TCGTAGGATGATTGGAAGTG+GGG | - | chr3_3:85758702-85758721 | None:intergenic | 45.0% | |
| AATATGGAATCACCCCTGCT+TGG | - | chr3_3:85758734-85758753 | None:intergenic | 45.0% | |
| GAGATCCATTGTTCCATCAC+TGG | - | chr3_3:85758854-85758873 | None:intergenic | 45.0% | |
| TACAAGCAGAAGCTGATCCT+AGG | - | chr3_3:85759129-85759148 | None:intergenic | 45.0% | |
| !! | CACAAGACTTGGTGACTGTT+TGG | + | chr3_3:85759218-85759237 | Msa0480480:three_prime_UTR | 45.0% |
| !!! | ATTTAATAATTCTAAAATAT+TGG | + | chr3_3:85756472-85756491 | Msa0480480:intron | 5.0% |
| ! | TCGATTTGTCGTGTCGGACT+CGG | - | chr3_3:85753423-85753442 | None:intergenic | 50.0% |
| GAATGAGGAAGGAGGAGTAG+AGG | - | chr3_3:85753510-85753529 | None:intergenic | 50.0% | |
| ACTTCGCTTCCCGTGAAATC+TGG | + | chr3_3:85753579-85753598 | Msa0480480:five_prime_UTR | 50.0% | |
| CTTCCCGTGAAATCTGGCTA+TGG | + | chr3_3:85753585-85753604 | Msa0480480:exon | 50.0% | |
| AACACAGGGGGCTATGGTAT+TGG | + | chr3_3:85753914-85753933 | Msa0480480:intron | 50.0% | |
| GAGTCCGATATCACCAGAAG+TGG | - | chr3_3:85754426-85754445 | None:intergenic | 50.0% | |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr3_3:85754884-85754903 | None:intergenic | 50.0% |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr3_3:85754881-85754900 | Msa0480480:intron | 50.0% | |
| CTTAGTGGGATAAGGCTTGG+TGG | + | chr3_3:85754884-85754903 | Msa0480480:intron | 50.0% | |
| TAGGTTCGATGTCATACCCC+AGG | + | chr3_3:85755071-85755090 | Msa0480480:CDS | 50.0% | |
| TATACGCGTCCTGCTCAAGT+TGG | - | chr3_3:85755132-85755151 | None:intergenic | 50.0% | |
| TTAAGGGAGTGGAGACAGAC+AGG | + | chr3_3:85755505-85755524 | Msa0480480:intron | 50.0% | |
| TGTCCAGAACTCAGCACACT+GGG | - | chr3_3:85755541-85755560 | None:intergenic | 50.0% | |
| ATGTCCAGAACTCAGCACAC+TGG | - | chr3_3:85755542-85755561 | None:intergenic | 50.0% | |
| GAAGCAGAGACTGTTGGACT+TGG | - | chr3_3:85755583-85755602 | None:intergenic | 50.0% | |
| GGCCCACCATAAGATTGTGA+TGG | - | chr3_3:85755637-85755656 | None:intergenic | 50.0% | |
| ACAGAAGAAGATGGCTGGTG+GGG | - | chr3_3:85755694-85755713 | None:intergenic | 50.0% | |
| CAACAGAAGAAGATGGCTGG+TGG | - | chr3_3:85755696-85755715 | None:intergenic | 50.0% | |
| CACCAGCCATCTTCTTCTGT+TGG | + | chr3_3:85755694-85755713 | Msa0480480:CDS | 50.0% | |
| TGGACCTGTTCCAGGAACTA+AGG | + | chr3_3:85755723-85755742 | Msa0480480:CDS | 50.0% | |
| GGACCTGTTCCAGGAACTAA+GGG | + | chr3_3:85755724-85755743 | Msa0480480:CDS | 50.0% | |
| TTGCCCTTAGTTCCTGGAAC+AGG | - | chr3_3:85755730-85755749 | None:intergenic | 50.0% | |
| TGCTTCTTGCCCTTAGTTCC+TGG | - | chr3_3:85755736-85755755 | None:intergenic | 50.0% | |
| ATGCAGGGCCAAGTATTACC+AGG | + | chr3_3:85755918-85755937 | Msa0480480:intron | 50.0% | |
| AATACCCTTCTTCGGGACCA+GGG | + | chr3_3:85755958-85755977 | Msa0480480:CDS | 50.0% | |
| GCATCAATTGATCCGCTCGT+TGG | + | chr3_3:85756044-85756063 | Msa0480480:CDS | 50.0% | |
| CGTACTTTCTTGCCAACGAG+CGG | - | chr3_3:85756059-85756078 | None:intergenic | 50.0% | |
| TTGAAGAGAGTCGCAACGTG+GGG | - | chr3_3:85756356-85756375 | None:intergenic | 50.0% | |
| ! | GTTAGCCTGTGGTGCATACA+AGG | + | chr3_3:85756888-85756907 | Msa0480480:intron | 50.0% |
| AGACCTTTGGGCATTAGGAG+AGG | + | chr3_3:85756947-85756966 | Msa0480480:intron | 50.0% | |
| !! | CCTGGAGCATTTTACCCAGT+AGG | - | chr3_3:85757083-85757102 | None:intergenic | 50.0% |
| CCTACTGGGTAAAATGCTCC+AGG | + | chr3_3:85757080-85757099 | Msa0480480:intron | 50.0% | |
| CTCCAGGGCCCAAAAAAATG+TGG | + | chr3_3:85757096-85757115 | Msa0480480:intron | 50.0% | |
| GGCCCAAAAAAATGTGGGCT+GGG | + | chr3_3:85757102-85757121 | Msa0480480:intron | 50.0% | |
| !! | AATGTGGGCTGGGATGTGTT+TGG | + | chr3_3:85757112-85757131 | Msa0480480:intron | 50.0% |
| TTACATGGAACCAGCAGCTG+CGG | - | chr3_3:85757496-85757515 | None:intergenic | 50.0% | |
| CTTGTAACCGCAGATCTCTC+CGG | + | chr3_3:85757714-85757733 | Msa0480480:intron | 50.0% | |
| !!! | AACCATCGTTTTGGGGGATC+TGG | + | chr3_3:85757772-85757791 | Msa0480480:CDS | 50.0% |
| GATCTGGTCGTGGGATGAAT+AGG | + | chr3_3:85757788-85757807 | Msa0480480:CDS | 50.0% | |
| CGTGGGATGAATAGGTCTGT+AGG | + | chr3_3:85757796-85757815 | Msa0480480:CDS | 50.0% | |
| ! | GTAGGTCGTGATAGTGTTCC+AGG | + | chr3_3:85757814-85757833 | Msa0480480:CDS | 50.0% |
| ! | AAGAGGTAGGGGAGGTACAA+AGG | + | chr3_3:85757843-85757862 | Msa0480480:CDS | 50.0% |
| ! | AGAGGTAGGGGAGGTACAAA+GGG | + | chr3_3:85757844-85757863 | Msa0480480:CDS | 50.0% |
| ! | GGGTAACTTGTCAGGTGGAA+AGG | + | chr3_3:85758041-85758060 | Msa0480480:intron | 50.0% |
| TGATTGGAAGTGGGGTGTAG+TGG | - | chr3_3:85758694-85758713 | None:intergenic | 50.0% | |
| TTCAGTGAAGTGGCCAGTGA+TGG | + | chr3_3:85758838-85758857 | Msa0480480:intron | 50.0% | |
| ! | AGTGGCCAGTGATGGAACAA+TGG | + | chr3_3:85758846-85758865 | Msa0480480:intron | 50.0% |
| !! | TGGGGAAAAGGAGGCATTCA+AGG | + | chr3_3:85759001-85759020 | Msa0480480:three_prime_UTR | 50.0% |
| ! | CTCTTGCTGCTTGAGGTGCT+TGG | - | chr3_3:85754396-85754415 | None:intergenic | 55.0% |
| CAAGCACCTCAAGCAGCAAG+AGG | + | chr3_3:85754394-85754413 | Msa0480480:intron | 55.0% | |
| ! | TCAGCACCTCTTGCTGCTTG+AGG | - | chr3_3:85754403-85754422 | None:intergenic | 55.0% |
| !! | CAAGAGGTGCTGACCACTTC+TGG | + | chr3_3:85754410-85754429 | Msa0480480:intron | 55.0% |
| ACTAAGTGGGGCAGCCTACA+TGG | - | chr3_3:85754870-85754889 | None:intergenic | 55.0% | |
| ATGTAGGCTGCCCCACTTAG+TGG | + | chr3_3:85754869-85754888 | Msa0480480:intron | 55.0% | |
| TGTAGGCTGCCCCACTTAGT+GGG | + | chr3_3:85754870-85754889 | Msa0480480:intron | 55.0% | |
| CTGCCCCACTTAGTGGGATA+AGG | + | chr3_3:85754876-85754895 | Msa0480480:intron | 55.0% | |
| AACTCAGCACACTGGGCTGA+TGG | - | chr3_3:85755534-85755553 | None:intergenic | 55.0% | |
| !! | ACGGGCTGGGGATGAAATGA+AGG | - | chr3_3:85755664-85755683 | None:intergenic | 55.0% |
| TTCATTTCATCCCCAGCCCG+TGG | + | chr3_3:85755663-85755682 | Msa0480480:CDS | 55.0% | |
| GGAAAACGTGGACCTGTTCC+AGG | + | chr3_3:85755715-85755734 | Msa0480480:CDS | 55.0% | |
| CAATACCCTTCTTCGGGACC+AGG | + | chr3_3:85755957-85755976 | Msa0480480:CDS | 55.0% | |
| ATACCCTTCTTCGGGACCAG+GGG | + | chr3_3:85755959-85755978 | Msa0480480:CDS | 55.0% | |
| GGTACTTGATTCCTTCCCCC+TGG | - | chr3_3:85755978-85755997 | None:intergenic | 55.0% | |
| !! | GTTACTTCGGGTACTGGCAC+AGG | + | chr3_3:85756005-85756024 | Msa0480480:CDS | 55.0% |
| GCACCTCTCCTAATGCCCAA+AGG | - | chr3_3:85756953-85756972 | None:intergenic | 55.0% | |
| !!! | GCCCACATTTTTTTGGGCCC+TGG | - | chr3_3:85757101-85757120 | None:intergenic | 55.0% |
| GGGCCCAAAAAAATGTGGGC+TGG | + | chr3_3:85757101-85757120 | Msa0480480:intron | 55.0% | |
| GACCAGATCCCCCAAAACGA+TGG | - | chr3_3:85757777-85757796 | None:intergenic | 55.0% | |
| !!! | GTTTTGGGGGATCTGGTCGT+GGG | + | chr3_3:85757779-85757798 | Msa0480480:CDS | 55.0% |
| ! | CGTGATAGTGTTCCAGGAGC+TGG | + | chr3_3:85757820-85757839 | Msa0480480:CDS | 55.0% |
| AGTGTTCCAGGAGCTGGAAG+AGG | + | chr3_3:85757826-85757845 | Msa0480480:CDS | 55.0% | |
| TTCCAGGAGCTGGAAGAGGT+AGG | + | chr3_3:85757830-85757849 | Msa0480480:CDS | 55.0% | |
| TCCAGGAGCTGGAAGAGGTA+GGG | + | chr3_3:85757831-85757850 | Msa0480480:CDS | 55.0% | |
| ! | GAGGTAGGGGAGGTACAAAG+GGG | + | chr3_3:85757845-85757864 | Msa0480480:CDS | 55.0% |
| CTTCCATGCCGTGGAAACAG+TGG | + | chr3_3:85758656-85758675 | Msa0480480:intron | 55.0% | |
| ! | CTAGAGGGGCACGTCTTGCT+GGG | + | chr3_3:85755032-85755051 | Msa0480480:CDS | 60.0% |
| GGGCACGTCTTGCTGGGAAT+GGG | + | chr3_3:85755038-85755057 | Msa0480480:CDS | 60.0% | |
| GGGAATGGGCGATCTGCAGT+AGG | + | chr3_3:85755052-85755071 | Msa0480480:CDS | 60.0% | |
| AGGGAGTGGAGACAGACAGG+AGG | + | chr3_3:85755508-85755527 | Msa0480480:intron | 60.0% | |
| CAGCCCAGTGTGCTGAGTTC+TGG | + | chr3_3:85755535-85755554 | Msa0480480:CDS | 60.0% | |
| TACCCTTCTTCGGGACCAGG+GGG | + | chr3_3:85755960-85755979 | Msa0480480:CDS | 60.0% | |
| TTCCCCCTGGTCCCGAAGAA+GGG | - | chr3_3:85755965-85755984 | None:intergenic | 60.0% | |
| !! | TGGCACAGGTGAGCTTGCTG+AGG | + | chr3_3:85756019-85756038 | Msa0480480:CDS | 60.0% |
| !! | GGCACAGGTGAGCTTGCTGA+GGG | + | chr3_3:85756020-85756039 | Msa0480480:CDS | 60.0% |
| CAGTTGAAGACCGCAGCTGC+TGG | + | chr3_3:85757483-85757502 | Msa0480480:intron | 60.0% | |
| CAATGGGTAGGGGAGGAACC+TGG | + | chr3_3:85757745-85757764 | Msa0480480:CDS | 60.0% | |
| !!! | CGTTTTGGGGGATCTGGTCG+TGG | + | chr3_3:85757778-85757797 | Msa0480480:CDS | 60.0% |
| CCAGGAGCTGGAAGAGGTAG+GGG | + | chr3_3:85757832-85757851 | Msa0480480:CDS | 60.0% | |
| TGGCCACTGTTTCCACGGCA+TGG | - | chr3_3:85758662-85758681 | None:intergenic | 60.0% | |
| CCAGCAAGACGTGCCCCTCT+AGG | - | chr3_3:85755034-85755053 | None:intergenic | 65.0% | |
| ! | CCTAGAGGGGCACGTCTTGC+TGG | + | chr3_3:85755031-85755050 | Msa0480480:CDS | 65.0% |
| GGGGCACGTCTTGCTGGGAA+TGG | + | chr3_3:85755037-85755056 | Msa0480480:CDS | 65.0% | |
| CTTCCCCCTGGTCCCGAAGA+AGG | - | chr3_3:85755966-85755985 | None:intergenic | 65.0% | |
| CTTCTTCGGGACCAGGGGGA+AGG | + | chr3_3:85755964-85755983 | Msa0480480:CDS | 65.0% | |
| CCCCTACCTCTTCCAGCTCC+TGG | - | chr3_3:85757835-85757854 | None:intergenic | 65.0% | |
| GGAGCTGGAAGAGGTAGGGG+AGG | + | chr3_3:85757835-85757854 | Msa0480480:CDS | 65.0% | |
| TGGCTGGTGGGGTGCAGCCA+CGG | - | chr3_3:85755683-85755702 | None:intergenic | 70.0% | |
| ! | TGGGGTGCAGCCACGGGCTG+GGG | - | chr3_3:85755676-85755695 | None:intergenic | 75.0% |
| GTGGGGTGCAGCCACGGGCT+GGG | - | chr3_3:85755677-85755696 | None:intergenic | 75.0% | |
| GGCTGGTGGGGTGCAGCCAC+GGG | - | chr3_3:85755682-85755701 | None:intergenic | 75.0% | |
| ! | GGTGGGGTGCAGCCACGGGC+TGG | - | chr3_3:85755678-85755697 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 85753338 | 85759279 | 85753338 | ID=Msa0480480;Name=Msa0480480 |
| chr3_3 | mRNA | 85753338 | 85759279 | 85753338 | ID=Msa0480480-mRNA-1;Parent=Msa0480480;Name=Msa0480480-mRNA-1;_AED=0.08;_eAED=0.08;_QI=266|0.88|0.9|1|0.77|0.9|10|300|432 |
| chr3_3 | exon | 85753338 | 85753631 | 85753338 | ID=Msa0480480-mRNA-1:exon:24693;Parent=Msa0480480-mRNA-1 |
| chr3_3 | exon | 85754990 | 85755198 | 85754990 | ID=Msa0480480-mRNA-1:exon:24694;Parent=Msa0480480-mRNA-1 |
| chr3_3 | exon | 85755287 | 85755396 | 85755287 | ID=Msa0480480-mRNA-1:exon:24695;Parent=Msa0480480-mRNA-1 |
| chr3_3 | exon | 85755519 | 85755762 | 85755519 | ID=Msa0480480-mRNA-1:exon:24696;Parent=Msa0480480-mRNA-1 |
| chr3_3 | exon | 85755924 | 85756142 | 85755924 | ID=Msa0480480-mRNA-1:exon:24697;Parent=Msa0480480-mRNA-1 |
| chr3_3 | exon | 85756229 | 85756297 | 85756229 | ID=Msa0480480-mRNA-1:exon:24698;Parent=Msa0480480-mRNA-1 |
| chr3_3 | exon | 85757727 | 85757963 | 85757727 | ID=Msa0480480-mRNA-1:exon:24699;Parent=Msa0480480-mRNA-1 |
| chr3_3 | exon | 85758055 | 85758123 | 85758055 | ID=Msa0480480-mRNA-1:exon:24700;Parent=Msa0480480-mRNA-1 |
| chr3_3 | exon | 85758236 | 85758299 | 85758236 | ID=Msa0480480-mRNA-1:exon:24701;Parent=Msa0480480-mRNA-1 |
| chr3_3 | exon | 85758930 | 85759279 | 85758930 | ID=Msa0480480-mRNA-1:exon:24702;Parent=Msa0480480-mRNA-1 |
| chr3_3 | five_prime_UTR | 85753338 | 85753603 | 85753338 | ID=Msa0480480-mRNA-1:five_prime_utr;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85753604 | 85753631 | 85753604 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85754990 | 85755198 | 85754990 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85755287 | 85755396 | 85755287 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85755519 | 85755762 | 85755519 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85755924 | 85756142 | 85755924 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85756229 | 85756297 | 85756229 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85757727 | 85757963 | 85757727 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85758055 | 85758123 | 85758055 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85758236 | 85758299 | 85758236 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | CDS | 85758930 | 85758979 | 85758930 | ID=Msa0480480-mRNA-1:cds;Parent=Msa0480480-mRNA-1 |
| chr3_3 | three_prime_UTR | 85758980 | 85759279 | 85758980 | ID=Msa0480480-mRNA-1:three_prime_utr;Parent=Msa0480480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
