Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480740 | QDX01714.1 | 99.373 | 319 | 2 | 0 | 1 | 319 | 1 | 319 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480740 | sp|F4HY61|NAC10_ARATH | 58.967 | 329 | 97 | 12 | 1 | 314 | 1 | 306 | 2.03e-118 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480740 | A0A6B7JET0 | 99.373 | 319 | 2 | 0 | 1 | 319 | 1 | 319 | 0.0 | 664 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0480740 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0480740 | Msa0945200 | 0.972150 | 2.675128e-134 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480740 | MtrunA17_Chr4g0046431 | 95.925 | 319 | 12 | 1 | 1 | 319 | 1 | 318 | 0.0 | 637 |
| Msa0480740 | MtrunA17_Chr8g0367761 | 97.309 | 223 | 6 | 0 | 1 | 223 | 1 | 223 | 3.87e-164 | 457 |
| Msa0480740 | MtrunA17_Chr2g0282871 | 61.231 | 325 | 92 | 8 | 1 | 314 | 1 | 302 | 1.03e-135 | 387 |
| Msa0480740 | MtrunA17_Chr4g0040541 | 65.201 | 273 | 84 | 6 | 29 | 295 | 10 | 277 | 6.02e-122 | 351 |
| Msa0480740 | MtrunA17_Chr2g0324961 | 66.078 | 283 | 84 | 8 | 27 | 305 | 10 | 284 | 6.07e-119 | 343 |
| Msa0480740 | MtrunA17_Chr8g0389661 | 70.588 | 204 | 47 | 5 | 47 | 241 | 30 | 229 | 2.60e-95 | 290 |
| Msa0480740 | MtrunA17_Chr5g0422431 | 58.081 | 198 | 80 | 2 | 44 | 241 | 36 | 230 | 2.31e-75 | 238 |
| Msa0480740 | MtrunA17_Chr1g0198751 | 55.721 | 201 | 86 | 2 | 44 | 244 | 36 | 233 | 1.34e-71 | 229 |
| Msa0480740 | MtrunA17_Chr7g0227071 | 55.978 | 184 | 74 | 3 | 47 | 227 | 36 | 215 | 8.14e-65 | 212 |
| Msa0480740 | MtrunA17_Chr1g0198741 | 52.846 | 123 | 58 | 0 | 123 | 245 | 7 | 129 | 1.19e-37 | 135 |
| Msa0480740 | MtrunA17_Chr6g0484441 | 30.159 | 189 | 109 | 6 | 68 | 249 | 5 | 177 | 1.19e-15 | 76.3 |
| Msa0480740 | MtrunA17_Chr6g0461661 | 30.698 | 215 | 105 | 10 | 68 | 267 | 18 | 203 | 1.47e-15 | 76.6 |
| Msa0480740 | MtrunA17_Chr6g0453451 | 32.394 | 142 | 79 | 4 | 68 | 208 | 20 | 145 | 5.59e-15 | 74.3 |
| Msa0480740 | MtrunA17_Chr3g0091921 | 30.952 | 168 | 93 | 5 | 68 | 228 | 16 | 167 | 5.75e-15 | 74.3 |
| Msa0480740 | MtrunA17_Chr3g0139331 | 30.286 | 175 | 99 | 7 | 56 | 225 | 1 | 157 | 2.89e-13 | 69.7 |
| Msa0480740 | MtrunA17_Chr2g0316971 | 31.579 | 171 | 90 | 7 | 68 | 228 | 23 | 176 | 9.89e-13 | 68.2 |
| Msa0480740 | MtrunA17_Chr2g0318101 | 29.012 | 162 | 96 | 5 | 54 | 212 | 1 | 146 | 1.57e-12 | 67.4 |
| Msa0480740 | MtrunA17_Chr3g0124761 | 31.034 | 145 | 78 | 6 | 68 | 209 | 7 | 132 | 1.89e-11 | 63.9 |
| Msa0480740 | MtrunA17_Chr7g0214071 | 28.571 | 175 | 98 | 9 | 68 | 237 | 15 | 167 | 3.50e-11 | 62.8 |
| Msa0480740 | MtrunA17_Chr8g0384721 | 29.861 | 144 | 83 | 5 | 68 | 210 | 7 | 133 | 5.07e-11 | 62.4 |
| Msa0480740 | MtrunA17_Chr4g0047841 | 29.114 | 158 | 93 | 6 | 54 | 208 | 1 | 142 | 6.91e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0480740 | AT1G28470.1 | 58.967 | 329 | 97 | 12 | 1 | 314 | 1 | 306 | 2.07e-119 | 346 |
| Msa0480740 | AT4G28500.1 | 70.464 | 237 | 60 | 5 | 1 | 236 | 1 | 228 | 7.58e-118 | 342 |
| Msa0480740 | AT4G29230.3 | 70.000 | 200 | 48 | 2 | 47 | 238 | 31 | 226 | 1.22e-98 | 298 |
| Msa0480740 | AT4G29230.1 | 70.000 | 200 | 48 | 2 | 47 | 238 | 31 | 226 | 4.83e-98 | 298 |
| Msa0480740 | AT4G29230.2 | 70.000 | 200 | 47 | 2 | 47 | 238 | 31 | 225 | 2.08e-97 | 296 |
| Msa0480740 | AT5G56620.3 | 65.174 | 201 | 56 | 4 | 47 | 236 | 25 | 222 | 7.64e-89 | 272 |
| Msa0480740 | AT5G56620.2 | 65.174 | 201 | 56 | 4 | 47 | 236 | 25 | 222 | 8.00e-89 | 271 |
| Msa0480740 | AT5G56620.1 | 65.174 | 201 | 56 | 4 | 47 | 236 | 25 | 222 | 1.09e-88 | 271 |
| Msa0480740 | AT1G25580.1 | 59.140 | 186 | 67 | 4 | 47 | 232 | 39 | 215 | 1.12e-69 | 224 |
| Msa0480740 | AT5G14490.2 | 49.206 | 189 | 91 | 4 | 45 | 232 | 34 | 218 | 1.18e-55 | 182 |
| Msa0480740 | AT5G14490.1 | 49.206 | 189 | 91 | 4 | 45 | 232 | 37 | 221 | 1.51e-55 | 184 |
| Msa0480740 | AT5G14490.4 | 49.206 | 189 | 91 | 4 | 45 | 232 | 34 | 218 | 1.52e-55 | 184 |
| Msa0480740 | AT5G14490.3 | 49.206 | 189 | 91 | 4 | 45 | 232 | 37 | 221 | 2.10e-55 | 184 |
| Msa0480740 | AT3G01600.1 | 48.387 | 186 | 92 | 3 | 45 | 229 | 34 | 216 | 3.76e-52 | 176 |
| Msa0480740 | AT3G04060.1 | 32.597 | 181 | 98 | 6 | 58 | 230 | 10 | 174 | 2.21e-18 | 84.7 |
| Msa0480740 | AT5G18270.2 | 34.078 | 179 | 92 | 7 | 61 | 230 | 14 | 175 | 1.36e-16 | 79.7 |
| Msa0480740 | AT5G18270.1 | 34.078 | 179 | 92 | 7 | 61 | 230 | 14 | 175 | 2.28e-16 | 79.0 |
| Msa0480740 | AT5G07680.2 | 32.738 | 168 | 90 | 5 | 68 | 228 | 3 | 154 | 1.57e-15 | 76.3 |
| Msa0480740 | AT5G07680.1 | 32.738 | 168 | 90 | 5 | 68 | 228 | 17 | 168 | 2.05e-15 | 76.3 |
| Msa0480740 | AT3G18400.1 | 31.481 | 162 | 91 | 5 | 68 | 225 | 5 | 150 | 3.94e-15 | 75.1 |
| Msa0480740 | AT5G61430.1 | 30.952 | 168 | 93 | 5 | 68 | 228 | 16 | 167 | 1.32e-14 | 73.9 |
| Msa0480740 | AT1G33060.2 | 31.176 | 170 | 88 | 8 | 55 | 217 | 11 | 158 | 4.23e-13 | 70.5 |
| Msa0480740 | AT1G33060.1 | 31.176 | 170 | 88 | 8 | 55 | 217 | 11 | 158 | 4.29e-13 | 70.5 |
| Msa0480740 | AT1G01720.1 | 30.201 | 149 | 86 | 5 | 62 | 209 | 1 | 132 | 1.73e-12 | 67.4 |
| Msa0480740 | AT4G35580.3 | 30.667 | 150 | 85 | 6 | 61 | 207 | 2 | 135 | 3.67e-12 | 67.4 |
| Msa0480740 | AT4G35580.2 | 30.667 | 150 | 85 | 6 | 61 | 207 | 2 | 135 | 3.92e-12 | 67.4 |
| Msa0480740 | AT4G35580.1 | 30.667 | 150 | 85 | 6 | 61 | 207 | 2 | 135 | 4.88e-12 | 67.0 |
| Msa0480740 | AT1G76420.1 | 30.208 | 192 | 98 | 9 | 67 | 247 | 21 | 187 | 1.65e-11 | 64.7 |
| Msa0480740 | AT1G02230.1 | 33.108 | 148 | 76 | 6 | 69 | 210 | 4 | 134 | 2.05e-11 | 64.7 |
| Msa0480740 | AT5G14000.1 | 28.659 | 164 | 91 | 6 | 68 | 225 | 15 | 158 | 3.43e-11 | 62.4 |
Find 106 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACCATGTTGGTCATAATT+TGG | 0.115945 | 3_3:+86301161 | Msa0480740:CDS |
| TAACCAAGTTTGGAATAAAT+TGG | 0.141092 | 3_3:-86301197 | None:intergenic |
| AATAGTAATAATAATATTAT+TGG | 0.195881 | 3_3:-86301391 | None:intergenic |
| TGCAGTATCCTTGATAATAT+TGG | 0.229118 | 3_3:-86301043 | None:intergenic |
| GTATATTTATTCTATATATA+TGG | 0.248593 | 3_3:+86301457 | Msa0480740:three_prime_UTR |
| TTCCCTGAATCACCTCTTAT+AGG | 0.278891 | 3_3:-86297903 | None:intergenic |
| CAATGAACTACCGGGTTTAC+CGG | 0.282184 | 3_3:+86298524 | Msa0480740:CDS |
| GGCCACATGAGGGGCAAGTT+AGG | 0.308122 | 3_3:-86298276 | None:intergenic |
| CCTGTTGTGTATGCTTTAGA+TGG | 0.308469 | 3_3:-86300739 | None:intergenic |
| GTACTTTCATTGCTAGTTCC+AGG | 0.310383 | 3_3:-86298211 | None:intergenic |
| GACCATGTTGGTCATAATTT+GGG | 0.314192 | 3_3:+86301162 | Msa0480740:CDS |
| GATACTGCAAGTTATGAAAA+TGG | 0.315715 | 3_3:+86301057 | Msa0480740:CDS |
| ATCAATAAGAGGATGAAGTT+TGG | 0.318163 | 3_3:-86298619 | None:intergenic |
| TCACCTTGCATAACCAAGTT+TGG | 0.330649 | 3_3:-86301207 | None:intergenic |
| GGTAGATTATTAATGTATAA+TGG | 0.333418 | 3_3:+86301309 | Msa0480740:three_prime_UTR |
| TTCCATTCTCTTCCTATAAG+AGG | 0.351549 | 3_3:+86297891 | Msa0480740:five_prime_UTR |
| GAGACAAGATGGCACAAAAC+AGG | 0.362354 | 3_3:+86300805 | Msa0480740:CDS |
| AACCAAGTTTGGAATAAATT+GGG | 0.365436 | 3_3:-86301196 | None:intergenic |
| TCAAGAGATACTTCAGCATT+TGG | 0.367315 | 3_3:+86298572 | Msa0480740:CDS |
| CTAGTCCTCTACACCAACTA+TGG | 0.382144 | 3_3:+86300880 | Msa0480740:CDS |
| AATCATATAGAATAAGTGTT+AGG | 0.386827 | 3_3:+86297863 | Msa0480740:five_prime_UTR |
| ATGACTCACATGATCAAGAT+AGG | 0.387971 | 3_3:+86298158 | Msa0480740:CDS |
| AAGGAATGAGGCAAAGGGAG+AGG | 0.389085 | 3_3:-86297761 | None:intergenic |
| GAGGAGCTTCATTATCATCT+TGG | 0.390234 | 3_3:-86301104 | None:intergenic |
| TATAGCTACATAGATGTTGA+TGG | 0.397210 | 3_3:+86301338 | Msa0480740:three_prime_UTR |
| AAAATTAAAATACCTGATCT+TGG | 0.400632 | 3_3:-86298312 | None:intergenic |
| GATCTTGGAATTCAATGTTA+TGG | 0.401417 | 3_3:-86298297 | None:intergenic |
| ATCCCAATTTATTCCAAACT+TGG | 0.402709 | 3_3:+86301194 | Msa0480740:CDS |
| ATCCATTGCCAATCGAATAA+AGG | 0.406204 | 3_3:-86301238 | None:intergenic |
| TCAATAAGAGGATGAAGTTT+GGG | 0.408567 | 3_3:-86298618 | None:intergenic |
| AGGAATGAGGCAAAGGGAGA+GGG | 0.412221 | 3_3:-86297760 | None:intergenic |
| CACATTGTCGAGGCTGTGTC+TGG | 0.424638 | 3_3:-86301008 | None:intergenic |
| ATAACATCTACTGTTATTCC+TGG | 0.425471 | 3_3:+86298193 | Msa0480740:CDS |
| CCGTTCTCTCCTTCAAGTGT+TGG | 0.428976 | 3_3:-86298651 | None:intergenic |
| GCAATGGATGCAAACAAAGC+TGG | 0.432392 | 3_3:+86301252 | Msa0480740:CDS |
| TGGCTCTTCCTTTATTCGAT+TGG | 0.446932 | 3_3:+86301230 | Msa0480740:CDS |
| TGAAGTATCTCTTGATCATT+CGG | 0.452486 | 3_3:-86298564 | None:intergenic |
| TTCCTTTATTCGATTGGCAA+TGG | 0.456787 | 3_3:+86301236 | Msa0480740:CDS |
| GGAATGAGGCAAAGGGAGAG+GGG | 0.461441 | 3_3:-86297759 | None:intergenic |
| TTTGGAAGCAAAGGTTCTGT+TGG | 0.466993 | 3_3:+86298590 | Msa0480740:CDS |
| AAGAGAAGGAATGAGGCAAA+GGG | 0.467082 | 3_3:-86297766 | None:intergenic |
| GCCACATGAGGGGCAAGTTA+GGG | 0.468972 | 3_3:-86298275 | None:intergenic |
| ATGTCATGATCTCTTCGATT+GGG | 0.469642 | 3_3:-86298129 | None:intergenic |
| CCATCTAAAGCATACACAAC+AGG | 0.476509 | 3_3:+86300739 | Msa0480740:CDS |
| TAACATTGAATTCCAAGATC+AGG | 0.478563 | 3_3:+86298300 | Msa0480740:CDS |
| GAAGAGAAGGAATGAGGCAA+AGG | 0.478812 | 3_3:-86297767 | None:intergenic |
| GTATTGATGCATCACCCAAT+TGG | 0.485290 | 3_3:-86300926 | None:intergenic |
| AGAAGCCAGAGAAAACCAAT+TGG | 0.487035 | 3_3:+86300911 | Msa0480740:CDS |
| TGATAATGAAGCTCCTCCTA+TGG | 0.487564 | 3_3:+86301110 | Msa0480740:CDS |
| GCCTTCCATAGTTGGTGTAG+AGG | 0.488969 | 3_3:-86300885 | None:intergenic |
| GGGTGGAATCAATGAACTAC+CGG | 0.491627 | 3_3:+86298515 | Msa0480740:intron |
| TTTATTGATGGTGTTATGAA+AGG | 0.492139 | 3_3:+86300844 | Msa0480740:CDS |
| TTCATAAATTATGACCATGT+TGG | 0.496915 | 3_3:+86301150 | Msa0480740:CDS |
| GAGTTCATACCAACACTTGA+AGG | 0.498892 | 3_3:+86298642 | Msa0480740:CDS |
| ACTTCAGCATTTGGAAGCAA+AGG | 0.499727 | 3_3:+86298581 | Msa0480740:CDS |
| GCAAGTTAGGGTTCGAACTT+CGG | 0.505146 | 3_3:-86298263 | None:intergenic |
| TTCACTCCCGCCGGTAAACC+CGG | 0.515913 | 3_3:-86298534 | None:intergenic |
| CACCTCTTATAGGAAGAGAA+TGG | 0.516751 | 3_3:-86297893 | None:intergenic |
| TGGTGAAATAGTTGTTTCAA+AGG | 0.519548 | 3_3:+86300978 | Msa0480740:CDS |
| AGATCAGGCACTTCTTTCAC+AGG | 0.523371 | 3_3:+86300716 | Msa0480740:CDS |
| GAGAGAGAAGAGAAGGAATG+AGG | 0.524402 | 3_3:-86297773 | None:intergenic |
| AATGGACTGATGATAAATCA+AGG | 0.525858 | 3_3:+86301075 | Msa0480740:CDS |
| CATGTCATGATCTCTTCGAT+TGG | 0.526995 | 3_3:-86298130 | None:intergenic |
| AAATAATTCCAATATTATCA+AGG | 0.530116 | 3_3:+86301035 | Msa0480740:CDS |
| GGTATGAACTCATCAATAAG+AGG | 0.531878 | 3_3:-86298630 | None:intergenic |
| ATTCCAAACTTGGTTATGCA+AGG | 0.537547 | 3_3:+86301204 | Msa0480740:CDS |
| TGACTCACATGATCAAGATA+GGG | 0.539762 | 3_3:+86298159 | Msa0480740:CDS |
| TCTCTTCTTCATTACTACCA+AGG | 0.544705 | 3_3:-86300951 | None:intergenic |
| AGTAATGAAGAAGAGAAAGA+TGG | 0.544775 | 3_3:+86300958 | Msa0480740:CDS |
| GAAGCCAGAGAAAACCAATT+GGG | 0.545727 | 3_3:+86300912 | Msa0480740:CDS |
| GTTAGGGTTCGAACTTCGGT+TGG | 0.551703 | 3_3:-86298259 | None:intergenic |
| GTCATAAAGAAAATAAATGT+GGG | 0.553867 | 3_3:-86297731 | None:intergenic |
| ATATTTGTTGTAGGGTGGTG+TGG | 0.556762 | 3_3:+86298062 | Msa0480740:intron |
| AAGGTTCAAACTGATGAAGA+AGG | 0.557893 | 3_3:+86300778 | Msa0480740:CDS |
| TGAGAATTGTAGTAATCCAT+AGG | 0.559542 | 3_3:-86301126 | None:intergenic |
| AGTCATAAAGAAAATAAATG+TGG | 0.560838 | 3_3:-86297732 | None:intergenic |
| AAGAAGGAAGTGAGACAAGA+TGG | 0.561201 | 3_3:+86300794 | Msa0480740:CDS |
| AGGAACAAGGAAAAGAAGAA+AGG | 0.568088 | 3_3:+86300759 | Msa0480740:CDS |
| AAATAAATGTGGGACTCAAG+TGG | 0.568834 | 3_3:-86297721 | None:intergenic |
| TTCAATGTTATGGCCACATG+AGG | 0.572377 | 3_3:-86298287 | None:intergenic |
| GAACTACCGGGTTTACCGGC+GGG | 0.574315 | 3_3:+86298528 | Msa0480740:CDS |
| ATTTATATTAGAGAAAATTG+AGG | 0.574390 | 3_3:+86301480 | Msa0480740:three_prime_UTR |
| CAATGGATGCAAACAAAGCT+GGG | 0.577780 | 3_3:+86301253 | Msa0480740:CDS |
| TCCTCTACACCAACTATGGA+AGG | 0.579155 | 3_3:+86300884 | Msa0480740:CDS |
| AACTTGGTTATGCAAGGTGA+TGG | 0.581693 | 3_3:+86301210 | Msa0480740:CDS |
| AATAAATGTGGGACTCAAGT+GGG | 0.581931 | 3_3:-86297720 | None:intergenic |
| ACACATCCAGAAAAGCTACC+AGG | 0.603148 | 3_3:+86298684 | Msa0480740:CDS |
| CAATGTTATGGCCACATGAG+GGG | 0.604114 | 3_3:-86298285 | None:intergenic |
| ACCCTAACTTGCCCCTCATG+TGG | 0.610760 | 3_3:+86298274 | Msa0480740:CDS |
| TCAATGTTATGGCCACATGA+GGG | 0.611845 | 3_3:-86298286 | None:intergenic |
| AGACAAGATGGCACAAAACA+GGG | 0.622480 | 3_3:+86300806 | Msa0480740:CDS |
| CTTCTTCATTACTACCAAGG+TGG | 0.625108 | 3_3:-86300948 | None:intergenic |
| AAGCATACACAACAGGAACA+AGG | 0.626885 | 3_3:+86300746 | Msa0480740:CDS |
| TTATTTCCACCACATTGTCG+AGG | 0.627002 | 3_3:-86301018 | None:intergenic |
| TATATGATTGAAGTGCAAAG+AGG | 0.627327 | 3_3:-86297849 | None:intergenic |
| CCAACACTTGAAGGAGAGAA+CGG | 0.633139 | 3_3:+86298651 | Msa0480740:CDS |
| GGATCAAACTTCACTCCCGC+CGG | 0.638080 | 3_3:-86298543 | None:intergenic |
| GACTCACATGATCAAGATAG+GGG | 0.642351 | 3_3:+86298160 | Msa0480740:CDS |
| ACACAGCCTCGACAATGTGG+TGG | 0.657333 | 3_3:+86301012 | Msa0480740:CDS |
| GAATTGTAGTAATCCATAGG+AGG | 0.664154 | 3_3:-86301123 | None:intergenic |
| CAATCGAAGAGATCATGACA+TGG | 0.666033 | 3_3:+86298131 | Msa0480740:exon |
| TGAACTACCGGGTTTACCGG+CGG | 0.666476 | 3_3:+86298527 | Msa0480740:CDS |
| GTGATGCATCAATACCACCT+TGG | 0.670736 | 3_3:+86300934 | Msa0480740:CDS |
| CAGACACAGCCTCGACAATG+TGG | 0.682956 | 3_3:+86301009 | Msa0480740:CDS |
| TTCCCAAATTATGACCAACA+TGG | 0.685630 | 3_3:-86301164 | None:intergenic |
| GGTGGAATCAATGAACTACC+GGG | 0.690700 | 3_3:+86298516 | Msa0480740:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAACAATAAATAAAGTT+TGG | - | chr3_3:86298465-86298484 | None:intergenic | 10.0% |
| !!! | TAATATATATTTACTCTTTT+TGG | + | chr3_3:86299096-86299115 | Msa0480740:intron | 10.0% |
| !!! | TTTAAAATTATATAGATAGA+TGG | + | chr3_3:86299159-86299178 | Msa0480740:intron | 10.0% |
| !!! | TAATTATTTTTTTTTGGATT+CGG | - | chr3_3:86300218-86300237 | None:intergenic | 10.0% |
| !! | GTATATTTATTCTATATATA+TGG | + | chr3_3:86301457-86301476 | Msa0480740:three_prime_UTR | 10.0% |
| !! | AGGAAAAAATAAAAGAAAAA+GGG | - | chr3_3:86297965-86297984 | None:intergenic | 15.0% |
| !! | AAGGAAAAAATAAAAGAAAA+AGG | - | chr3_3:86297966-86297985 | None:intergenic | 15.0% |
| !! | AAAAAAAATACAAACACTAA+GGG | - | chr3_3:86298355-86298374 | None:intergenic | 15.0% |
| !! | AAAAAAAAATACAAACACTA+AGG | - | chr3_3:86298356-86298375 | None:intergenic | 15.0% |
| !!! | ATGTTTTATCTAAAATTTAG+TGG | + | chr3_3:86298899-86298918 | Msa0480740:intron | 15.0% |
| !!! | TTTTTATAACACTTTTTTGA+AGG | + | chr3_3:86298965-86298984 | Msa0480740:intron | 15.0% |
| !!! | AAAAAAATAGCTGTATTTTT+TGG | - | chr3_3:86299041-86299060 | None:intergenic | 15.0% |
| !! | ATACAATGTATATATTTCAT+AGG | - | chr3_3:86299246-86299265 | None:intergenic | 15.0% |
| !!! | ATATACATTGTATTTTTTGA+TGG | + | chr3_3:86299253-86299272 | Msa0480740:intron | 15.0% |
| !!! | TTTGTATTATGTTAATTTTC+AGG | - | chr3_3:86299629-86299648 | None:intergenic | 15.0% |
| !! | TTGATTATATTTAACTCATA+AGG | + | chr3_3:86299702-86299721 | Msa0480740:intron | 15.0% |
| !!! | TGTCTCTAATTATTTTTTTT+TGG | - | chr3_3:86300224-86300243 | None:intergenic | 15.0% |
| !!! | TAATACATGAACATTTTATT+TGG | - | chr3_3:86300477-86300496 | None:intergenic | 15.0% |
| !! | AAATAATTCCAATATTATCA+AGG | + | chr3_3:86301035-86301054 | Msa0480740:CDS | 15.0% |
| !! | ATTTATATTAGAGAAAATTG+AGG | + | chr3_3:86301480-86301499 | Msa0480740:three_prime_UTR | 15.0% |
| !! | GTCATAAAGAAAATAAATGT+GGG | - | chr3_3:86297734-86297753 | None:intergenic | 20.0% |
| !! | AGTCATAAAGAAAATAAATG+TGG | - | chr3_3:86297735-86297754 | None:intergenic | 20.0% |
| !! | AATCATATAGAATAAGTGTT+AGG | + | chr3_3:86297863-86297882 | Msa0480740:five_prime_UTR | 20.0% |
| !!! | TGTTTTTATGTTGATAGAAT+TGG | + | chr3_3:86298101-86298120 | Msa0480740:five_prime_UTR | 20.0% |
| !! | AAAATTAAAATACCTGATCT+TGG | - | chr3_3:86298315-86298334 | None:intergenic | 20.0% |
| !! | ACTCTAGTTATTAAACTTTA+AGG | - | chr3_3:86299281-86299300 | None:intergenic | 20.0% |
| !! | TAAAGTTTAATAACTAGAGT+TGG | + | chr3_3:86299281-86299300 | Msa0480740:intron | 20.0% |
| !! | AAAGTTTAATAACTAGAGTT+GGG | + | chr3_3:86299282-86299301 | Msa0480740:intron | 20.0% |
| !! | AATTTATTTAATAAAGACCC+TGG | + | chr3_3:86299333-86299352 | Msa0480740:intron | 20.0% |
| !!! | ATGAAGTCATCTTTAATTTT+TGG | - | chr3_3:86299770-86299789 | None:intergenic | 20.0% |
| !!! | AAAGTGTAAGACATTTTTTT+TGG | - | chr3_3:86300342-86300361 | None:intergenic | 20.0% |
| !! | GGTAGATTATTAATGTATAA+TGG | + | chr3_3:86301309-86301328 | Msa0480740:three_prime_UTR | 20.0% |
| !!! | AATCTGTGATATTTGTTGTA+GGG | + | chr3_3:86298054-86298073 | Msa0480740:intron | 25.0% |
| ! | GTAAAATGTTAATTAAGACC+TGG | - | chr3_3:86298705-86298724 | None:intergenic | 25.0% |
| !!! | TTACTTTCTAACTTTTTCTC+TGG | + | chr3_3:86298721-86298740 | Msa0480740:intron | 25.0% |
| ! | TAGTAGTATATGCATAAAAC+AGG | - | chr3_3:86298778-86298797 | None:intergenic | 25.0% |
| !! | TGTTTTATGCATATACTACT+AGG | + | chr3_3:86298777-86298796 | Msa0480740:intron | 25.0% |
| !! | GTTTTATGCATATACTACTA+GGG | + | chr3_3:86298778-86298797 | Msa0480740:intron | 25.0% |
| !!! | TAACACTTTTTTGAAGGAAA+CGG | + | chr3_3:86298971-86298990 | Msa0480740:intron | 25.0% |
| ! | AAGTTTAATAACTAGAGTTG+GGG | + | chr3_3:86299283-86299302 | Msa0480740:intron | 25.0% |
| !!! | TTGGTTTGTGAAATAATTAG+CGG | + | chr3_3:86299307-86299326 | Msa0480740:intron | 25.0% |
| ! | TGGTAAAATATCTTATTCCA+GGG | - | chr3_3:86299353-86299372 | None:intergenic | 25.0% |
| !! | TAAGATATTTTACCAGTCAA+AGG | + | chr3_3:86299358-86299377 | Msa0480740:intron | 25.0% |
| ! | TGTACACTATTCTTTAATCA+TGG | + | chr3_3:86299586-86299605 | Msa0480740:intron | 25.0% |
| ! | GTACACTATTCTTTAATCAT+GGG | + | chr3_3:86299587-86299606 | Msa0480740:intron | 25.0% |
| ! | TGTTTACACAAACTTCTATT+TGG | - | chr3_3:86299664-86299683 | None:intergenic | 25.0% |
| !!! | AGTCATCTTTAATTTTTGGA+AGG | - | chr3_3:86299766-86299785 | None:intergenic | 25.0% |
| ! | TACTTGAGTTACATAAAAAC+AGG | - | chr3_3:86299839-86299858 | None:intergenic | 25.0% |
| ! | TGACATGTGATTAATGTTTA+GGG | - | chr3_3:86299939-86299958 | None:intergenic | 25.0% |
| ! | TTGACATGTGATTAATGTTT+AGG | - | chr3_3:86299940-86299959 | None:intergenic | 25.0% |
| ! | AACTGCACATAATTATCAAA+AGG | + | chr3_3:86299970-86299989 | Msa0480740:intron | 25.0% |
| ! | ACTGCACATAATTATCAAAA+GGG | + | chr3_3:86299971-86299990 | Msa0480740:intron | 25.0% |
| ! | AAAAAATTAATTGCATCTCC+AGG | - | chr3_3:86300023-86300042 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTGGATTCGGAT+CGG | - | chr3_3:86300213-86300232 | None:intergenic | 25.0% |
| !!! | TCCTTTTAATATTTTGGAAC+GGG | - | chr3_3:86300294-86300313 | None:intergenic | 25.0% |
| !!! | GTCCTTTTAATATTTTGGAA+CGG | - | chr3_3:86300295-86300314 | None:intergenic | 25.0% |
| !! | CACATGTCCTTTTAATATTT+TGG | - | chr3_3:86300300-86300319 | None:intergenic | 25.0% |
| ! | TAGATCTAAACAAATTGGTT+CGG | + | chr3_3:86300599-86300618 | Msa0480740:intron | 25.0% |
| ! | ATAACACCATCAATAAAAAC+TGG | - | chr3_3:86300841-86300860 | None:intergenic | 25.0% |
| !!! | TTTATTGATGGTGTTATGAA+AGG | + | chr3_3:86300844-86300863 | Msa0480740:CDS | 25.0% |
| ! | TTCATAAATTATGACCATGT+TGG | + | chr3_3:86301150-86301169 | Msa0480740:CDS | 25.0% |
| !! | AACCAAGTTTGGAATAAATT+GGG | - | chr3_3:86301199-86301218 | None:intergenic | 25.0% |
| !! | TAACCAAGTTTGGAATAAAT+TGG | - | chr3_3:86301200-86301219 | None:intergenic | 25.0% |
| TATATGATTGAAGTGCAAAG+AGG | - | chr3_3:86297852-86297871 | None:intergenic | 30.0% | |
| !! | GAATCTGTGATATTTGTTGT+AGG | + | chr3_3:86298053-86298072 | Msa0480740:intron | 30.0% |
| ATAACATCTACTGTTATTCC+TGG | + | chr3_3:86298193-86298212 | Msa0480740:CDS | 30.0% | |
| GATCTTGGAATTCAATGTTA+TGG | - | chr3_3:86298300-86298319 | None:intergenic | 30.0% | |
| TAACATTGAATTCCAAGATC+AGG | + | chr3_3:86298300-86298319 | Msa0480740:CDS | 30.0% | |
| TTGTGTGTGAATGATTGAAT+AGG | + | chr3_3:86298494-86298513 | Msa0480740:intron | 30.0% | |
| TGTGTGTGAATGATTGAATA+GGG | + | chr3_3:86298495-86298514 | Msa0480740:intron | 30.0% | |
| ! | TGAAGTATCTCTTGATCATT+CGG | - | chr3_3:86298567-86298586 | None:intergenic | 30.0% |
| TCAATAAGAGGATGAAGTTT+GGG | - | chr3_3:86298621-86298640 | None:intergenic | 30.0% | |
| ATCAATAAGAGGATGAAGTT+TGG | - | chr3_3:86298622-86298641 | None:intergenic | 30.0% | |
| ! | TTTTATCACTGAGAATGCAA+GGG | - | chr3_3:86299009-86299028 | None:intergenic | 30.0% |
| ! | ATTTTATCACTGAGAATGCA+AGG | - | chr3_3:86299010-86299029 | None:intergenic | 30.0% |
| GCATTCTCAGTGATAAAATT+TGG | + | chr3_3:86299011-86299030 | Msa0480740:intron | 30.0% | |
| AGTTTAATAACTAGAGTTGG+GGG | + | chr3_3:86299284-86299303 | Msa0480740:intron | 30.0% | |
| CTGGTAAAATATCTTATTCC+AGG | - | chr3_3:86299354-86299373 | None:intergenic | 30.0% | |
| GAAGAAATTAAGCAAATGAG+AGG | + | chr3_3:86299477-86299496 | Msa0480740:intron | 30.0% | |
| !!! | CCTTGTGCTTTATTTTCATT+GGG | - | chr3_3:86299876-86299895 | None:intergenic | 30.0% |
| !!! | TCCTTGTGCTTTATTTTCAT+TGG | - | chr3_3:86299877-86299896 | None:intergenic | 30.0% |
| ATGAAAATAAAGCACAAGGA+AGG | + | chr3_3:86299877-86299896 | Msa0480740:intron | 30.0% | |
| GAGTAACAGATTGACATAAA+TGG | - | chr3_3:86300079-86300098 | None:intergenic | 30.0% | |
| !! | ATCTCTTTTCCGTTTGTTTT+CGG | + | chr3_3:86300135-86300154 | Msa0480740:intron | 30.0% |
| ATAGAGATAAAACACAGACT+CGG | + | chr3_3:86300247-86300266 | Msa0480740:intron | 30.0% | |
| ! | TACTATTTGACAACGTGTTT+TGG | + | chr3_3:86300495-86300514 | Msa0480740:intron | 30.0% |
| ! | ACTATTTGACAACGTGTTTT+GGG | + | chr3_3:86300496-86300515 | Msa0480740:intron | 30.0% |
| GGGTTTAGATCTAAACAAAT+TGG | + | chr3_3:86300594-86300613 | Msa0480740:intron | 30.0% | |
| !! | AGTCTTTTGTTATAACATGC+AGG | + | chr3_3:86300676-86300695 | Msa0480740:intron | 30.0% |
| TAAAAAAAGATGGACAGATC+AGG | + | chr3_3:86300701-86300720 | Msa0480740:CDS | 30.0% | |
| ! | ACTAGACCAGTTTTTATTGA+TGG | + | chr3_3:86300832-86300851 | Msa0480740:CDS | 30.0% |
| AGTAATGAAGAAGAGAAAGA+TGG | + | chr3_3:86300958-86300977 | Msa0480740:CDS | 30.0% | |
| ! | TGGTGAAATAGTTGTTTCAA+AGG | + | chr3_3:86300978-86300997 | Msa0480740:CDS | 30.0% |
| ! | TGCAGTATCCTTGATAATAT+TGG | - | chr3_3:86301046-86301065 | None:intergenic | 30.0% |
| GATACTGCAAGTTATGAAAA+TGG | + | chr3_3:86301057-86301076 | Msa0480740:CDS | 30.0% | |
| !! | AATGGACTGATGATAAATCA+AGG | + | chr3_3:86301075-86301094 | Msa0480740:CDS | 30.0% |
| TGAGAATTGTAGTAATCCAT+AGG | - | chr3_3:86301129-86301148 | None:intergenic | 30.0% | |
| ATCCCAATTTATTCCAAACT+TGG | + | chr3_3:86301194-86301213 | Msa0480740:CDS | 30.0% | |
| TAGCTATGTGAAAAACTTCT+TGG | + | chr3_3:86301288-86301307 | Msa0480740:exon | 30.0% | |
| TATAGCTACATAGATGTTGA+TGG | + | chr3_3:86301338-86301357 | Msa0480740:three_prime_UTR | 30.0% | |
| TTCCATTCTCTTCCTATAAG+AGG | + | chr3_3:86297891-86297910 | Msa0480740:five_prime_UTR | 35.0% | |
| TTCCTATAAGAGGTGATTCA+GGG | + | chr3_3:86297901-86297920 | Msa0480740:intron | 35.0% | |
| ATGTCATGATCTCTTCGATT+GGG | - | chr3_3:86298132-86298151 | None:intergenic | 35.0% | |
| ATGACTCACATGATCAAGAT+AGG | + | chr3_3:86298158-86298177 | Msa0480740:CDS | 35.0% | |
| TGACTCACATGATCAAGATA+GGG | + | chr3_3:86298159-86298178 | Msa0480740:CDS | 35.0% | |
| TTATGAGCAGAAATCGAACT+CGG | + | chr3_3:86298389-86298408 | Msa0480740:intron | 35.0% | |
| TCAAGAGATACTTCAGCATT+TGG | + | chr3_3:86298572-86298591 | Msa0480740:CDS | 35.0% | |
| GGTATGAACTCATCAATAAG+AGG | - | chr3_3:86298633-86298652 | None:intergenic | 35.0% | |
| ! | ATGCATGATGGTTTGGATTA+TGG | + | chr3_3:86298748-86298767 | Msa0480740:intron | 35.0% |
| TTTATCACTGAGAATGCAAG+GGG | - | chr3_3:86299008-86299027 | None:intergenic | 35.0% | |
| TTGGAAGGATCATCAAGAAA+AGG | - | chr3_3:86299751-86299770 | None:intergenic | 35.0% | |
| CCCAATGAAAATAAAGCACA+AGG | + | chr3_3:86299873-86299892 | Msa0480740:intron | 35.0% | |
| GAAGGAGACAAAAATGAGAA+AGG | + | chr3_3:86299895-86299914 | Msa0480740:intron | 35.0% | |
| GAAAGAACTAACCAAAATCC+TGG | + | chr3_3:86300002-86300021 | Msa0480740:intron | 35.0% | |
| ! | TAATTGCATCTCCAGGATTT+TGG | - | chr3_3:86300016-86300035 | None:intergenic | 35.0% |
| ! | GATTGACATAAATGGCTTGT+TGG | - | chr3_3:86300071-86300090 | None:intergenic | 35.0% |
| CAATCCAAAAGCTTAAGTGT+CGG | - | chr3_3:86300187-86300206 | None:intergenic | 35.0% | |
| ! | GACACTTAAGCTTTTGGATT+GGG | + | chr3_3:86300186-86300205 | Msa0480740:intron | 35.0% |
| TAGAGATAAAACACAGACTC+GGG | + | chr3_3:86300248-86300267 | Msa0480740:intron | 35.0% | |
| GCCCGTTCCAAAATATTAAA+AGG | + | chr3_3:86300290-86300309 | Msa0480740:intron | 35.0% | |
| TGAGTGTACAAAAAGTGAGT+TGG | - | chr3_3:86300655-86300674 | None:intergenic | 35.0% | |
| CATGCAGGTGTAAAAAAAGA+TGG | + | chr3_3:86300691-86300710 | Msa0480740:intron | 35.0% | |
| AGGAACAAGGAAAAGAAGAA+AGG | + | chr3_3:86300759-86300778 | Msa0480740:CDS | 35.0% | |
| AAGGTTCAAACTGATGAAGA+AGG | + | chr3_3:86300778-86300797 | Msa0480740:CDS | 35.0% | |
| TCTCTTCTTCATTACTACCA+AGG | - | chr3_3:86300954-86300973 | None:intergenic | 35.0% | |
| GAATTGTAGTAATCCATAGG+AGG | - | chr3_3:86301126-86301145 | None:intergenic | 35.0% | |
| TGACCATGTTGGTCATAATT+TGG | + | chr3_3:86301161-86301180 | Msa0480740:CDS | 35.0% | |
| GACCATGTTGGTCATAATTT+GGG | + | chr3_3:86301162-86301181 | Msa0480740:CDS | 35.0% | |
| TTCCCAAATTATGACCAACA+TGG | - | chr3_3:86301167-86301186 | None:intergenic | 35.0% | |
| ATTCCAAACTTGGTTATGCA+AGG | + | chr3_3:86301204-86301223 | Msa0480740:CDS | 35.0% | |
| TTCCTTTATTCGATTGGCAA+TGG | + | chr3_3:86301236-86301255 | Msa0480740:CDS | 35.0% | |
| ATCCATTGCCAATCGAATAA+AGG | - | chr3_3:86301241-86301260 | None:intergenic | 35.0% | |
| AAGAGAAGGAATGAGGCAAA+GGG | - | chr3_3:86297769-86297788 | None:intergenic | 40.0% | |
| CACCTCTTATAGGAAGAGAA+TGG | - | chr3_3:86297896-86297915 | None:intergenic | 40.0% | |
| CTTCCTATAAGAGGTGATTC+AGG | + | chr3_3:86297900-86297919 | Msa0480740:intron | 40.0% | |
| TTCCCTGAATCACCTCTTAT+AGG | - | chr3_3:86297906-86297925 | None:intergenic | 40.0% | |
| !! | CTGTGATATTTGTTGTAGGG+TGG | + | chr3_3:86298057-86298076 | Msa0480740:intron | 40.0% |
| !! | ATATTTGTTGTAGGGTGGTG+TGG | + | chr3_3:86298062-86298081 | Msa0480740:intron | 40.0% |
| CATGTCATGATCTCTTCGAT+TGG | - | chr3_3:86298133-86298152 | None:intergenic | 40.0% | |
| CAATCGAAGAGATCATGACA+TGG | + | chr3_3:86298131-86298150 | Msa0480740:exon | 40.0% | |
| GACTCACATGATCAAGATAG+GGG | + | chr3_3:86298160-86298179 | Msa0480740:CDS | 40.0% | |
| GTACTTTCATTGCTAGTTCC+AGG | - | chr3_3:86298214-86298233 | None:intergenic | 40.0% | |
| TCAATGTTATGGCCACATGA+GGG | - | chr3_3:86298289-86298308 | None:intergenic | 40.0% | |
| TTCAATGTTATGGCCACATG+AGG | - | chr3_3:86298290-86298309 | None:intergenic | 40.0% | |
| ACTTTCAACACTCACACACA+TGG | + | chr3_3:86298420-86298439 | Msa0480740:intron | 40.0% | |
| ! | AAGTTTGGAGCGTAAGTGAT+TGG | - | chr3_3:86298450-86298469 | None:intergenic | 40.0% |
| GTGTGAATGATTGAATAGGG+TGG | + | chr3_3:86298498-86298517 | Msa0480740:intron | 40.0% | |
| ACTTCAGCATTTGGAAGCAA+AGG | + | chr3_3:86298581-86298600 | Msa0480740:CDS | 40.0% | |
| TTTGGAAGCAAAGGTTCTGT+TGG | + | chr3_3:86298590-86298609 | Msa0480740:CDS | 40.0% | |
| GAGTTCATACCAACACTTGA+AGG | + | chr3_3:86298642-86298661 | Msa0480740:CDS | 40.0% | |
| ! | TTAAGACCTGGTAGCTTTTC+TGG | - | chr3_3:86298693-86298712 | None:intergenic | 40.0% |
| ! | TTCTCTGGTTTGATGCATGA+TGG | + | chr3_3:86298736-86298755 | Msa0480740:intron | 40.0% |
| TGGTTTGATGCATGATGGTT+TGG | + | chr3_3:86298741-86298760 | Msa0480740:intron | 40.0% | |
| TAATAACTAGAGTTGGGGGT+TGG | + | chr3_3:86299288-86299307 | Msa0480740:intron | 40.0% | |
| CTAGACGTTATTCCTTTGAC+TGG | - | chr3_3:86299373-86299392 | None:intergenic | 40.0% | |
| CAGTCAAAGGAATAACGTCT+AGG | + | chr3_3:86299371-86299390 | Msa0480740:intron | 40.0% | |
| ! | CGACACTTAAGCTTTTGGAT+TGG | + | chr3_3:86300185-86300204 | Msa0480740:intron | 40.0% |
| !!! | TTAATATTTTGGAACGGGCC+AGG | - | chr3_3:86300289-86300308 | None:intergenic | 40.0% |
| !!! | AACGTGTTTTGGGATCATTC+TGG | + | chr3_3:86300506-86300525 | Msa0480740:intron | 40.0% |
| !! | AATTGGTTCGGTCTAATGTC+AGG | + | chr3_3:86300611-86300630 | Msa0480740:intron | 40.0% |
| !! | ATTGGTTCGGTCTAATGTCA+GGG | + | chr3_3:86300612-86300631 | Msa0480740:intron | 40.0% |
| ! | CCTGTTGTGTATGCTTTAGA+TGG | - | chr3_3:86300742-86300761 | None:intergenic | 40.0% |
| ! | CCATCTAAAGCATACACAAC+AGG | + | chr3_3:86300739-86300758 | Msa0480740:CDS | 40.0% |
| AAGCATACACAACAGGAACA+AGG | + | chr3_3:86300746-86300765 | Msa0480740:CDS | 40.0% | |
| AAGAAGGAAGTGAGACAAGA+TGG | + | chr3_3:86300794-86300813 | Msa0480740:CDS | 40.0% | |
| AGACAAGATGGCACAAAACA+GGG | + | chr3_3:86300806-86300825 | Msa0480740:CDS | 40.0% | |
| ! | CTTCTTTTGCCTTCCATAGT+TGG | - | chr3_3:86300896-86300915 | None:intergenic | 40.0% |
| AGAAGCCAGAGAAAACCAAT+TGG | + | chr3_3:86300911-86300930 | Msa0480740:CDS | 40.0% | |
| GAAGCCAGAGAAAACCAATT+GGG | + | chr3_3:86300912-86300931 | Msa0480740:CDS | 40.0% | |
| !!! | ATCACCCAATTGGTTTTCTC+TGG | - | chr3_3:86300919-86300938 | None:intergenic | 40.0% |
| ! | GTATTGATGCATCACCCAAT+TGG | - | chr3_3:86300929-86300948 | None:intergenic | 40.0% |
| CTTCTTCATTACTACCAAGG+TGG | - | chr3_3:86300951-86300970 | None:intergenic | 40.0% | |
| TTATTTCCACCACATTGTCG+AGG | - | chr3_3:86301021-86301040 | None:intergenic | 40.0% | |
| GAGGAGCTTCATTATCATCT+TGG | - | chr3_3:86301107-86301126 | None:intergenic | 40.0% | |
| ! | TGATAATGAAGCTCCTCCTA+TGG | + | chr3_3:86301110-86301129 | Msa0480740:CDS | 40.0% |
| TCACCTTGCATAACCAAGTT+TGG | - | chr3_3:86301210-86301229 | None:intergenic | 40.0% | |
| AACTTGGTTATGCAAGGTGA+TGG | + | chr3_3:86301210-86301229 | Msa0480740:CDS | 40.0% | |
| TGGCTCTTCCTTTATTCGAT+TGG | + | chr3_3:86301230-86301249 | Msa0480740:CDS | 40.0% | |
| CAATGGATGCAAACAAAGCT+GGG | + | chr3_3:86301253-86301272 | Msa0480740:CDS | 40.0% | |
| GAAGAGAAGGAATGAGGCAA+AGG | - | chr3_3:86297770-86297789 | None:intergenic | 45.0% | |
| GAGAGAGAAGAGAAGGAATG+AGG | - | chr3_3:86297776-86297795 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAAGAGA+AGG | - | chr3_3:86297783-86297802 | None:intergenic | 45.0% | |
| GCAAGTTAGGGTTCGAACTT+CGG | - | chr3_3:86298266-86298285 | None:intergenic | 45.0% | |
| CAATGTTATGGCCACATGAG+GGG | - | chr3_3:86298288-86298307 | None:intergenic | 45.0% | |
| AGAAATCGAACTCGGTACTC+TGG | + | chr3_3:86298397-86298416 | Msa0480740:intron | 45.0% | |
| GGGTGGAATCAATGAACTAC+CGG | + | chr3_3:86298515-86298534 | Msa0480740:intron | 45.0% | |
| GGTGGAATCAATGAACTACC+GGG | + | chr3_3:86298516-86298535 | Msa0480740:CDS | 45.0% | |
| CAATGAACTACCGGGTTTAC+CGG | + | chr3_3:86298524-86298543 | Msa0480740:CDS | 45.0% | |
| CCAACACTTGAAGGAGAGAA+CGG | + | chr3_3:86298651-86298670 | Msa0480740:CDS | 45.0% | |
| ACACATCCAGAAAAGCTACC+AGG | + | chr3_3:86298684-86298703 | Msa0480740:CDS | 45.0% | |
| TGCATGCAAACTTGTCGAGT+TGG | - | chr3_3:86299524-86299543 | None:intergenic | 45.0% | |
| !! | TTTCCGTTTGTTTTCGGCAG+TGG | + | chr3_3:86300141-86300160 | Msa0480740:intron | 45.0% |
| AGTGTGATCGGGTTAAGAGA+CGG | + | chr3_3:86300573-86300592 | Msa0480740:intron | 45.0% | |
| AGATCAGGCACTTCTTTCAC+AGG | + | chr3_3:86300716-86300735 | Msa0480740:CDS | 45.0% | |
| GAGACAAGATGGCACAAAAC+AGG | + | chr3_3:86300805-86300824 | Msa0480740:CDS | 45.0% | |
| CTAGTCCTCTACACCAACTA+TGG | + | chr3_3:86300880-86300899 | Msa0480740:CDS | 45.0% | |
| TCCTCTACACCAACTATGGA+AGG | + | chr3_3:86300884-86300903 | Msa0480740:CDS | 45.0% | |
| GTGATGCATCAATACCACCT+TGG | + | chr3_3:86300934-86300953 | Msa0480740:CDS | 45.0% | |
| GCAATGGATGCAAACAAAGC+TGG | + | chr3_3:86301252-86301271 | Msa0480740:CDS | 45.0% | |
| !! | AATATATAACAAAATAAAAA+AGG | - | chr3_3:86297985-86298004 | None:intergenic | 5.0% |
| !!! | TTTTTTATTATTACTAATTT+TGG | + | chr3_3:86298026-86298045 | Msa0480740:intron | 5.0% |
| !!! | TATATATATATATTTTTTGA+AGG | + | chr3_3:86299193-86299212 | Msa0480740:intron | 5.0% |
| !! | AATAGTAATAATAATATTAT+TGG | - | chr3_3:86301394-86301413 | None:intergenic | 5.0% |
| AGGAATGAGGCAAAGGGAGA+GGG | - | chr3_3:86297763-86297782 | None:intergenic | 50.0% | |
| AAGGAATGAGGCAAAGGGAG+AGG | - | chr3_3:86297764-86297783 | None:intergenic | 50.0% | |
| GTTAGGGTTCGAACTTCGGT+TGG | - | chr3_3:86298262-86298281 | None:intergenic | 50.0% | |
| CCGTTCTCTCCTTCAAGTGT+TGG | - | chr3_3:86298654-86298673 | None:intergenic | 50.0% | |
| TGAGTGCACCAAACTCAGTG+TGG | + | chr3_3:86299544-86299563 | Msa0480740:intron | 50.0% | |
| CAATGCCACCACACTGAGTT+TGG | - | chr3_3:86299555-86299574 | None:intergenic | 50.0% | |
| ACGCCACTGCCGAAAACAAA+CGG | - | chr3_3:86300147-86300166 | None:intergenic | 50.0% | |
| TGGCGTCACAAAACCTGATC+CGG | + | chr3_3:86300161-86300180 | Msa0480740:intron | 50.0% | |
| !! | CCAAAAGCTTAAGTGTCGGC+CGG | - | chr3_3:86300183-86300202 | None:intergenic | 50.0% |
| CGTACCTCATCGAGTGTGAT+CGG | + | chr3_3:86300561-86300580 | Msa0480740:intron | 50.0% | |
| GTACCTCATCGAGTGTGATC+GGG | + | chr3_3:86300562-86300581 | Msa0480740:intron | 50.0% | |
| TAACCCGATCACACTCGATG+AGG | - | chr3_3:86300568-86300587 | None:intergenic | 50.0% | |
| GTGTGATCGGGTTAAGAGAC+GGG | + | chr3_3:86300574-86300593 | Msa0480740:intron | 50.0% | |
| TCTAATGTCAGGGCCAAGTG+AGG | + | chr3_3:86300622-86300641 | Msa0480740:intron | 50.0% | |
| CTAATGTCAGGGCCAAGTGA+GGG | + | chr3_3:86300623-86300642 | Msa0480740:intron | 50.0% | |
| AGTTGGATGTGTCCCTCACT+TGG | - | chr3_3:86300638-86300657 | None:intergenic | 50.0% | |
| ! | GCCTTCCATAGTTGGTGTAG+AGG | - | chr3_3:86300888-86300907 | None:intergenic | 50.0% |
| GGAATGAGGCAAAGGGAGAG+GGG | - | chr3_3:86297762-86297781 | None:intergenic | 55.0% | |
| ! | ACCCTAACTTGCCCCTCATG+TGG | + | chr3_3:86298274-86298293 | Msa0480740:CDS | 55.0% |
| GCCACATGAGGGGCAAGTTA+GGG | - | chr3_3:86298278-86298297 | None:intergenic | 55.0% | |
| TGAACTACCGGGTTTACCGG+CGG | + | chr3_3:86298527-86298546 | Msa0480740:CDS | 55.0% | |
| GGATCAAACTTCACTCCCGC+CGG | - | chr3_3:86298546-86298565 | None:intergenic | 55.0% | |
| GTGCACCAAACTCAGTGTGG+TGG | + | chr3_3:86299547-86299566 | Msa0480740:intron | 55.0% | |
| ! | CCGGCCGACACTTAAGCTTT+TGG | + | chr3_3:86300180-86300199 | Msa0480740:intron | 55.0% |
| CACAGACTCGGGTTAACCCT+CGG | + | chr3_3:86300259-86300278 | Msa0480740:intron | 55.0% | |
| ACAGACTCGGGTTAACCCTC+GGG | + | chr3_3:86300260-86300279 | Msa0480740:intron | 55.0% | |
| CACATTGTCGAGGCTGTGTC+TGG | - | chr3_3:86301011-86301030 | None:intergenic | 55.0% | |
| CAGACACAGCCTCGACAATG+TGG | + | chr3_3:86301009-86301028 | Msa0480740:CDS | 55.0% | |
| ACACAGCCTCGACAATGTGG+TGG | + | chr3_3:86301012-86301031 | Msa0480740:CDS | 55.0% | |
| GGCCACATGAGGGGCAAGTT+AGG | - | chr3_3:86298279-86298298 | None:intergenic | 60.0% | |
| GAACTACCGGGTTTACCGGC+GGG | + | chr3_3:86298528-86298547 | Msa0480740:CDS | 60.0% | |
| TTCACTCCCGCCGGTAAACC+CGG | - | chr3_3:86298537-86298556 | None:intergenic | 60.0% | |
| !! | GCTTAAGTGTCGGCCGGATC+AGG | - | chr3_3:86300177-86300196 | None:intergenic | 60.0% |
| GGGTTAACCCTCGGGTTACC+TGG | + | chr3_3:86300268-86300287 | Msa0480740:intron | 60.0% | |
| GAACGGGCCAGGTAACCCGA+GGG | - | chr3_3:86300278-86300297 | None:intergenic | 65.0% | |
| GGAACGGGCCAGGTAACCCG+AGG | - | chr3_3:86300279-86300298 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 86297722 | 86301506 | 86297722 | ID=Msa0480740;Name=Msa0480740 |
| chr3_3 | mRNA | 86297722 | 86301506 | 86297722 | ID=Msa0480740-mRNA-1;Parent=Msa0480740;Name=Msa0480740-mRNA-1;_AED=0.04;_eAED=0.04;_QI=261|1|1|1|0.66|0.5|4|216|319 |
| chr3_3 | exon | 86297722 | 86297912 | 86297722 | ID=Msa0480740-mRNA-1:exon:24881;Parent=Msa0480740-mRNA-1 |
| chr3_3 | exon | 86298075 | 86298321 | 86298075 | ID=Msa0480740-mRNA-1:exon:24882;Parent=Msa0480740-mRNA-1 |
| chr3_3 | exon | 86298516 | 86298705 | 86298516 | ID=Msa0480740-mRNA-1:exon:24883;Parent=Msa0480740-mRNA-1 |
| chr3_3 | exon | 86300698 | 86301506 | 86300698 | ID=Msa0480740-mRNA-1:exon:24884;Parent=Msa0480740-mRNA-1 |
| chr3_3 | five_prime_UTR | 86297722 | 86297912 | 86297722 | ID=Msa0480740-mRNA-1:five_prime_utr;Parent=Msa0480740-mRNA-1 |
| chr3_3 | five_prime_UTR | 86298075 | 86298144 | 86298075 | ID=Msa0480740-mRNA-1:five_prime_utr;Parent=Msa0480740-mRNA-1 |
| chr3_3 | CDS | 86298145 | 86298321 | 86298145 | ID=Msa0480740-mRNA-1:cds;Parent=Msa0480740-mRNA-1 |
| chr3_3 | CDS | 86298516 | 86298705 | 86298516 | ID=Msa0480740-mRNA-1:cds;Parent=Msa0480740-mRNA-1 |
| chr3_3 | CDS | 86300698 | 86301290 | 86300698 | ID=Msa0480740-mRNA-1:cds;Parent=Msa0480740-mRNA-1 |
| chr3_3 | three_prime_UTR | 86301291 | 86301506 | 86301291 | ID=Msa0480740-mRNA-1:three_prime_utr;Parent=Msa0480740-mRNA-1 |
| Gene Sequence |
| Protein sequence |
