Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945200 | QDX01714.1 | 99.373 | 319 | 2 | 0 | 1 | 319 | 1 | 319 | 0.0 | 664 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945200 | sp|F4HY61|NAC10_ARATH | 58.967 | 329 | 97 | 12 | 1 | 314 | 1 | 306 | 2.03e-118 | 346 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0945200 | TF | NAC |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0199960 | Msa0945200 | 0.822125 | 2.799902e-53 | -8.615850e-47 |
| Msa0480740 | Msa0945200 | 0.972150 | 2.675128e-134 | -8.615850e-47 |
| Msa0242490 | Msa0945200 | 0.819658 | 1.034800e-52 | -8.615850e-47 |
| Msa0243600 | Msa0945200 | 0.817544 | 3.121936e-52 | -8.615850e-47 |
| Msa0282220 | Msa0945200 | 0.804930 | 1.705056e-49 | -8.615850e-47 |
| Msa0557350 | Msa0945200 | 0.812060 | 5.125683e-51 | -8.615850e-47 |
| Msa0945200 | Msa1436420 | 0.812082 | 5.069119e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945200 | MtrunA17_Chr4g0046431 | 95.925 | 319 | 12 | 1 | 1 | 319 | 1 | 318 | 0.0 | 637 |
| Msa0945200 | MtrunA17_Chr8g0367761 | 97.309 | 223 | 6 | 0 | 1 | 223 | 1 | 223 | 3.87e-164 | 457 |
| Msa0945200 | MtrunA17_Chr2g0282871 | 61.231 | 325 | 92 | 8 | 1 | 314 | 1 | 302 | 1.03e-135 | 387 |
| Msa0945200 | MtrunA17_Chr4g0040541 | 65.201 | 273 | 84 | 6 | 29 | 295 | 10 | 277 | 6.02e-122 | 351 |
| Msa0945200 | MtrunA17_Chr2g0324961 | 66.078 | 283 | 84 | 8 | 27 | 305 | 10 | 284 | 6.07e-119 | 343 |
| Msa0945200 | MtrunA17_Chr8g0389661 | 70.588 | 204 | 47 | 5 | 47 | 241 | 30 | 229 | 2.60e-95 | 290 |
| Msa0945200 | MtrunA17_Chr5g0422431 | 58.081 | 198 | 80 | 2 | 44 | 241 | 36 | 230 | 2.31e-75 | 238 |
| Msa0945200 | MtrunA17_Chr1g0198751 | 55.721 | 201 | 86 | 2 | 44 | 244 | 36 | 233 | 1.34e-71 | 229 |
| Msa0945200 | MtrunA17_Chr7g0227071 | 55.978 | 184 | 74 | 3 | 47 | 227 | 36 | 215 | 8.14e-65 | 212 |
| Msa0945200 | MtrunA17_Chr1g0198741 | 52.846 | 123 | 58 | 0 | 123 | 245 | 7 | 129 | 1.19e-37 | 135 |
| Msa0945200 | MtrunA17_Chr6g0484441 | 30.159 | 189 | 109 | 6 | 68 | 249 | 5 | 177 | 1.19e-15 | 76.3 |
| Msa0945200 | MtrunA17_Chr6g0461661 | 30.698 | 215 | 105 | 10 | 68 | 267 | 18 | 203 | 1.47e-15 | 76.6 |
| Msa0945200 | MtrunA17_Chr6g0453451 | 32.394 | 142 | 79 | 4 | 68 | 208 | 20 | 145 | 5.59e-15 | 74.3 |
| Msa0945200 | MtrunA17_Chr3g0091921 | 30.952 | 168 | 93 | 5 | 68 | 228 | 16 | 167 | 5.75e-15 | 74.3 |
| Msa0945200 | MtrunA17_Chr3g0139331 | 30.286 | 175 | 99 | 7 | 56 | 225 | 1 | 157 | 2.89e-13 | 69.7 |
| Msa0945200 | MtrunA17_Chr2g0316971 | 31.579 | 171 | 90 | 7 | 68 | 228 | 23 | 176 | 9.89e-13 | 68.2 |
| Msa0945200 | MtrunA17_Chr2g0318101 | 29.012 | 162 | 96 | 5 | 54 | 212 | 1 | 146 | 1.57e-12 | 67.4 |
| Msa0945200 | MtrunA17_Chr3g0124761 | 31.034 | 145 | 78 | 6 | 68 | 209 | 7 | 132 | 1.89e-11 | 63.9 |
| Msa0945200 | MtrunA17_Chr7g0214071 | 28.571 | 175 | 98 | 9 | 68 | 237 | 15 | 167 | 3.50e-11 | 62.8 |
| Msa0945200 | MtrunA17_Chr8g0384721 | 29.861 | 144 | 83 | 5 | 68 | 210 | 7 | 133 | 5.07e-11 | 62.4 |
| Msa0945200 | MtrunA17_Chr4g0047841 | 29.114 | 158 | 93 | 6 | 54 | 208 | 1 | 142 | 6.91e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0945200 | AT1G28470.1 | 58.967 | 329 | 97 | 12 | 1 | 314 | 1 | 306 | 2.07e-119 | 346 |
| Msa0945200 | AT4G28500.1 | 70.464 | 237 | 60 | 5 | 1 | 236 | 1 | 228 | 7.58e-118 | 342 |
| Msa0945200 | AT4G29230.3 | 70.000 | 200 | 48 | 2 | 47 | 238 | 31 | 226 | 1.22e-98 | 298 |
| Msa0945200 | AT4G29230.1 | 70.000 | 200 | 48 | 2 | 47 | 238 | 31 | 226 | 4.83e-98 | 298 |
| Msa0945200 | AT4G29230.2 | 70.000 | 200 | 47 | 2 | 47 | 238 | 31 | 225 | 2.08e-97 | 296 |
| Msa0945200 | AT5G56620.3 | 65.174 | 201 | 56 | 4 | 47 | 236 | 25 | 222 | 7.64e-89 | 272 |
| Msa0945200 | AT5G56620.2 | 65.174 | 201 | 56 | 4 | 47 | 236 | 25 | 222 | 8.00e-89 | 271 |
| Msa0945200 | AT5G56620.1 | 65.174 | 201 | 56 | 4 | 47 | 236 | 25 | 222 | 1.09e-88 | 271 |
| Msa0945200 | AT1G25580.1 | 59.140 | 186 | 67 | 4 | 47 | 232 | 39 | 215 | 1.12e-69 | 224 |
| Msa0945200 | AT5G14490.2 | 49.206 | 189 | 91 | 4 | 45 | 232 | 34 | 218 | 1.18e-55 | 182 |
| Msa0945200 | AT5G14490.1 | 49.206 | 189 | 91 | 4 | 45 | 232 | 37 | 221 | 1.51e-55 | 184 |
| Msa0945200 | AT5G14490.4 | 49.206 | 189 | 91 | 4 | 45 | 232 | 34 | 218 | 1.52e-55 | 184 |
| Msa0945200 | AT5G14490.3 | 49.206 | 189 | 91 | 4 | 45 | 232 | 37 | 221 | 2.10e-55 | 184 |
| Msa0945200 | AT3G01600.1 | 48.387 | 186 | 92 | 3 | 45 | 229 | 34 | 216 | 3.76e-52 | 176 |
| Msa0945200 | AT3G04060.1 | 32.597 | 181 | 98 | 6 | 58 | 230 | 10 | 174 | 2.21e-18 | 84.7 |
| Msa0945200 | AT5G18270.2 | 34.078 | 179 | 92 | 7 | 61 | 230 | 14 | 175 | 1.36e-16 | 79.7 |
| Msa0945200 | AT5G18270.1 | 34.078 | 179 | 92 | 7 | 61 | 230 | 14 | 175 | 2.28e-16 | 79.0 |
| Msa0945200 | AT5G07680.2 | 32.738 | 168 | 90 | 5 | 68 | 228 | 3 | 154 | 1.57e-15 | 76.3 |
| Msa0945200 | AT5G07680.1 | 32.738 | 168 | 90 | 5 | 68 | 228 | 17 | 168 | 2.05e-15 | 76.3 |
| Msa0945200 | AT3G18400.1 | 31.481 | 162 | 91 | 5 | 68 | 225 | 5 | 150 | 3.94e-15 | 75.1 |
| Msa0945200 | AT5G61430.1 | 30.952 | 168 | 93 | 5 | 68 | 228 | 16 | 167 | 1.32e-14 | 73.9 |
| Msa0945200 | AT1G33060.2 | 31.176 | 170 | 88 | 8 | 55 | 217 | 11 | 158 | 4.23e-13 | 70.5 |
| Msa0945200 | AT1G33060.1 | 31.176 | 170 | 88 | 8 | 55 | 217 | 11 | 158 | 4.29e-13 | 70.5 |
| Msa0945200 | AT1G01720.1 | 30.201 | 149 | 86 | 5 | 62 | 209 | 1 | 132 | 1.73e-12 | 67.4 |
| Msa0945200 | AT4G35580.3 | 30.667 | 150 | 85 | 6 | 61 | 207 | 2 | 135 | 3.67e-12 | 67.4 |
| Msa0945200 | AT4G35580.2 | 30.667 | 150 | 85 | 6 | 61 | 207 | 2 | 135 | 3.92e-12 | 67.4 |
| Msa0945200 | AT4G35580.1 | 30.667 | 150 | 85 | 6 | 61 | 207 | 2 | 135 | 4.88e-12 | 67.0 |
| Msa0945200 | AT1G76420.1 | 30.208 | 192 | 98 | 9 | 67 | 247 | 21 | 187 | 1.65e-11 | 64.7 |
| Msa0945200 | AT1G02230.1 | 33.108 | 148 | 76 | 6 | 69 | 210 | 4 | 134 | 2.05e-11 | 64.7 |
| Msa0945200 | AT5G14000.1 | 28.659 | 164 | 91 | 6 | 68 | 225 | 15 | 158 | 3.43e-11 | 62.4 |
Find 106 sgRNAs with CRISPR-Local
Find 239 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACCATGTTGGTCATAATT+TGG | 0.115945 | 6_3:+23935095 | Msa0945200:CDS |
| TAACCAAGTTTGGAATAAAT+TGG | 0.141092 | 6_3:-23935131 | None:intergenic |
| AATAGTAATAATAATATTAT+TGG | 0.195881 | 6_3:-23935325 | None:intergenic |
| TGCAGTATCCTTGATAATAT+TGG | 0.229118 | 6_3:-23934977 | None:intergenic |
| GTATATTTATTCTATATATA+TGG | 0.248593 | 6_3:+23935391 | Msa0945200:three_prime_UTR |
| TTCCCTGAATCACCTCTTAT+AGG | 0.278891 | 6_3:-23931837 | None:intergenic |
| CAATGAACTACCGGGTTTAC+CGG | 0.282184 | 6_3:+23932459 | Msa0945200:CDS |
| GGCCACATGAGGGGCAAGTT+AGG | 0.308122 | 6_3:-23932211 | None:intergenic |
| CCTGTTGTGTATGCTTTAGA+TGG | 0.308469 | 6_3:-23934673 | None:intergenic |
| GTACTTTCATTGCTAGTTCC+AGG | 0.310383 | 6_3:-23932146 | None:intergenic |
| GACCATGTTGGTCATAATTT+GGG | 0.314192 | 6_3:+23935096 | Msa0945200:CDS |
| GATACTGCAAGTTATGAAAA+TGG | 0.315715 | 6_3:+23934991 | Msa0945200:CDS |
| ATCAATAAGAGGATGAAGTT+TGG | 0.318163 | 6_3:-23932554 | None:intergenic |
| TCACCTTGCATAACCAAGTT+TGG | 0.330649 | 6_3:-23935141 | None:intergenic |
| GGTAGATTATTAATGTATAA+TGG | 0.333418 | 6_3:+23935243 | Msa0945200:three_prime_UTR |
| TTCCATTCTCTTCCTATAAG+AGG | 0.351549 | 6_3:+23931825 | Msa0945200:five_prime_UTR |
| GAGACAAGATGGCACAAAAC+AGG | 0.362354 | 6_3:+23934739 | Msa0945200:CDS |
| AACCAAGTTTGGAATAAATT+GGG | 0.365436 | 6_3:-23935130 | None:intergenic |
| TCAAGAGATACTTCAGCATT+TGG | 0.367315 | 6_3:+23932507 | Msa0945200:CDS |
| CTAGTCCTCTACACCAACTA+TGG | 0.382144 | 6_3:+23934814 | Msa0945200:CDS |
| AATCATATAGAATAAGTGTT+AGG | 0.386827 | 6_3:+23931797 | Msa0945200:five_prime_UTR |
| ATGACTCACATGATCAAGAT+AGG | 0.387971 | 6_3:+23932093 | Msa0945200:CDS |
| AAGGAATGAGGCAAAGGGAG+AGG | 0.389085 | 6_3:-23931697 | None:intergenic |
| GAGGAGCTTCATTATCATCT+TGG | 0.390234 | 6_3:-23935038 | None:intergenic |
| TATAGCTACATAGATGTTGA+TGG | 0.397210 | 6_3:+23935272 | Msa0945200:three_prime_UTR |
| AAAATTAAAATACCTGATCT+TGG | 0.400632 | 6_3:-23932247 | None:intergenic |
| GATCTTGGAATTCAATGTTA+TGG | 0.401417 | 6_3:-23932232 | None:intergenic |
| ATCCCAATTTATTCCAAACT+TGG | 0.402709 | 6_3:+23935128 | Msa0945200:CDS |
| ATCCATTGCCAATCGAATAA+AGG | 0.406204 | 6_3:-23935172 | None:intergenic |
| TCAATAAGAGGATGAAGTTT+GGG | 0.408567 | 6_3:-23932553 | None:intergenic |
| AGGAATGAGGCAAAGGGAGA+GGG | 0.412221 | 6_3:-23931696 | None:intergenic |
| CACATTGTCGAGGCTGTGTC+TGG | 0.424638 | 6_3:-23934942 | None:intergenic |
| ATAACATCTACTGTTATTCC+TGG | 0.425471 | 6_3:+23932128 | Msa0945200:CDS |
| CCGTTCTCTCCTTCAAGTGT+TGG | 0.428976 | 6_3:-23932586 | None:intergenic |
| GCAATGGATGCAAACAAAGC+TGG | 0.432392 | 6_3:+23935186 | Msa0945200:CDS |
| TGGCTCTTCCTTTATTCGAT+TGG | 0.446932 | 6_3:+23935164 | Msa0945200:CDS |
| TGAAGTATCTCTTGATCATT+CGG | 0.452486 | 6_3:-23932499 | None:intergenic |
| TTCCTTTATTCGATTGGCAA+TGG | 0.456787 | 6_3:+23935170 | Msa0945200:CDS |
| GGAATGAGGCAAAGGGAGAG+GGG | 0.461441 | 6_3:-23931695 | None:intergenic |
| TTTGGAAGCAAAGGTTCTGT+TGG | 0.466993 | 6_3:+23932525 | Msa0945200:CDS |
| AAGAGAAGGAATGAGGCAAA+GGG | 0.467082 | 6_3:-23931702 | None:intergenic |
| GCCACATGAGGGGCAAGTTA+GGG | 0.468972 | 6_3:-23932210 | None:intergenic |
| ATGTCATGATCTCTTCGATT+GGG | 0.469642 | 6_3:-23932064 | None:intergenic |
| CCATCTAAAGCATACACAAC+AGG | 0.476509 | 6_3:+23934673 | Msa0945200:CDS |
| TAACATTGAATTCCAAGATC+AGG | 0.478563 | 6_3:+23932235 | Msa0945200:CDS |
| GAAGAGAAGGAATGAGGCAA+AGG | 0.478812 | 6_3:-23931703 | None:intergenic |
| GTATTGATGCATCACCCAAT+TGG | 0.485290 | 6_3:-23934860 | None:intergenic |
| AGAAGCCAGAGAAAACCAAT+TGG | 0.487035 | 6_3:+23934845 | Msa0945200:CDS |
| TGATAATGAAGCTCCTCCTA+TGG | 0.487564 | 6_3:+23935044 | Msa0945200:CDS |
| GCCTTCCATAGTTGGTGTAG+AGG | 0.488969 | 6_3:-23934819 | None:intergenic |
| GGGTGGAATCAATGAACTAC+CGG | 0.491627 | 6_3:+23932450 | Msa0945200:intron |
| TTTATTGATGGTGTTATGAA+AGG | 0.492139 | 6_3:+23934778 | Msa0945200:CDS |
| TTCATAAATTATGACCATGT+TGG | 0.496915 | 6_3:+23935084 | Msa0945200:CDS |
| GAGTTCATACCAACACTTGA+AGG | 0.498892 | 6_3:+23932577 | Msa0945200:CDS |
| ACTTCAGCATTTGGAAGCAA+AGG | 0.499727 | 6_3:+23932516 | Msa0945200:CDS |
| GCAAGTTAGGGTTCGAACTT+CGG | 0.505146 | 6_3:-23932198 | None:intergenic |
| TTCACTCCCGCCGGTAAACC+CGG | 0.515913 | 6_3:-23932469 | None:intergenic |
| CACCTCTTATAGGAAGAGAA+TGG | 0.516751 | 6_3:-23931827 | None:intergenic |
| TGGTGAAATAGTTGTTTCAA+AGG | 0.519548 | 6_3:+23934912 | Msa0945200:CDS |
| AGATCAGGCACTTCTTTCAC+AGG | 0.523371 | 6_3:+23934650 | Msa0945200:CDS |
| GAGAGAGAAGAGAAGGAATG+AGG | 0.524402 | 6_3:-23931709 | None:intergenic |
| AATGGACTGATGATAAATCA+AGG | 0.525858 | 6_3:+23935009 | Msa0945200:CDS |
| CATGTCATGATCTCTTCGAT+TGG | 0.526995 | 6_3:-23932065 | None:intergenic |
| AAATAATTCCAATATTATCA+AGG | 0.530116 | 6_3:+23934969 | Msa0945200:CDS |
| GGTATGAACTCATCAATAAG+AGG | 0.531878 | 6_3:-23932565 | None:intergenic |
| ATTCCAAACTTGGTTATGCA+AGG | 0.537547 | 6_3:+23935138 | Msa0945200:CDS |
| TGACTCACATGATCAAGATA+GGG | 0.539762 | 6_3:+23932094 | Msa0945200:CDS |
| TCTCTTCTTCATTACTACCA+AGG | 0.544705 | 6_3:-23934885 | None:intergenic |
| AGTAATGAAGAAGAGAAAGA+TGG | 0.544775 | 6_3:+23934892 | Msa0945200:CDS |
| GAAGCCAGAGAAAACCAATT+GGG | 0.545727 | 6_3:+23934846 | Msa0945200:CDS |
| GTTAGGGTTCGAACTTCGGT+TGG | 0.551703 | 6_3:-23932194 | None:intergenic |
| GTCATAAAGAAAATAAATGT+GGG | 0.553867 | 6_3:-23931667 | None:intergenic |
| ATATTTGTTGTAGGGTGGTG+TGG | 0.556762 | 6_3:+23931997 | Msa0945200:intron |
| AAGGTTCAAACTGATGAAGA+AGG | 0.557893 | 6_3:+23934712 | Msa0945200:CDS |
| TGAGAATTGTAGTAATCCAT+AGG | 0.559542 | 6_3:-23935060 | None:intergenic |
| AGTCATAAAGAAAATAAATG+TGG | 0.560838 | 6_3:-23931668 | None:intergenic |
| AAGAAGGAAGTGAGACAAGA+TGG | 0.561201 | 6_3:+23934728 | Msa0945200:CDS |
| AGGAACAAGGAAAAGAAGAA+AGG | 0.568088 | 6_3:+23934693 | Msa0945200:CDS |
| AAATAAATGTGGGACTCAAG+TGG | 0.568834 | 6_3:-23931657 | None:intergenic |
| TTCAATGTTATGGCCACATG+AGG | 0.572377 | 6_3:-23932222 | None:intergenic |
| GAACTACCGGGTTTACCGGC+GGG | 0.574315 | 6_3:+23932463 | Msa0945200:CDS |
| ATTTATATTAGAGAAAATTG+AGG | 0.574390 | 6_3:+23935414 | Msa0945200:three_prime_UTR |
| CAATGGATGCAAACAAAGCT+GGG | 0.577780 | 6_3:+23935187 | Msa0945200:CDS |
| TCCTCTACACCAACTATGGA+AGG | 0.579155 | 6_3:+23934818 | Msa0945200:CDS |
| AACTTGGTTATGCAAGGTGA+TGG | 0.581693 | 6_3:+23935144 | Msa0945200:CDS |
| AATAAATGTGGGACTCAAGT+GGG | 0.581931 | 6_3:-23931656 | None:intergenic |
| ACACATCCAGAAAAGCTACC+AGG | 0.603148 | 6_3:+23932619 | Msa0945200:CDS |
| CAATGTTATGGCCACATGAG+GGG | 0.604114 | 6_3:-23932220 | None:intergenic |
| ACCCTAACTTGCCCCTCATG+TGG | 0.610760 | 6_3:+23932209 | Msa0945200:CDS |
| TCAATGTTATGGCCACATGA+GGG | 0.611845 | 6_3:-23932221 | None:intergenic |
| AGACAAGATGGCACAAAACA+GGG | 0.622480 | 6_3:+23934740 | Msa0945200:CDS |
| CTTCTTCATTACTACCAAGG+TGG | 0.625108 | 6_3:-23934882 | None:intergenic |
| AAGCATACACAACAGGAACA+AGG | 0.626885 | 6_3:+23934680 | Msa0945200:CDS |
| TTATTTCCACCACATTGTCG+AGG | 0.627002 | 6_3:-23934952 | None:intergenic |
| TATATGATTGAAGTGCAAAG+AGG | 0.627327 | 6_3:-23931783 | None:intergenic |
| CCAACACTTGAAGGAGAGAA+CGG | 0.633139 | 6_3:+23932586 | Msa0945200:CDS |
| GGATCAAACTTCACTCCCGC+CGG | 0.638080 | 6_3:-23932478 | None:intergenic |
| GACTCACATGATCAAGATAG+GGG | 0.642351 | 6_3:+23932095 | Msa0945200:CDS |
| ACACAGCCTCGACAATGTGG+TGG | 0.657333 | 6_3:+23934946 | Msa0945200:CDS |
| GAATTGTAGTAATCCATAGG+AGG | 0.664154 | 6_3:-23935057 | None:intergenic |
| CAATCGAAGAGATCATGACA+TGG | 0.666033 | 6_3:+23932066 | Msa0945200:exon |
| TGAACTACCGGGTTTACCGG+CGG | 0.666476 | 6_3:+23932462 | Msa0945200:CDS |
| GTGATGCATCAATACCACCT+TGG | 0.670736 | 6_3:+23934868 | Msa0945200:CDS |
| CAGACACAGCCTCGACAATG+TGG | 0.682956 | 6_3:+23934943 | Msa0945200:CDS |
| TTCCCAAATTATGACCAACA+TGG | 0.685630 | 6_3:-23935098 | None:intergenic |
| GGTGGAATCAATGAACTACC+GGG | 0.690700 | 6_3:+23932451 | Msa0945200:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAACAATAAATAAAGTT+TGG | - | chr6_3:23932400-23932419 | None:intergenic | 10.0% |
| !!! | TAATATATATTTACTCTTTT+TGG | + | chr6_3:23933030-23933049 | Msa0945200:intron | 10.0% |
| !!! | TTTAAAATTATATAGATAGA+TGG | + | chr6_3:23933093-23933112 | Msa0945200:intron | 10.0% |
| !!! | TAATTATTTTTTTTTGGATT+CGG | - | chr6_3:23934152-23934171 | None:intergenic | 10.0% |
| !! | GTATATTTATTCTATATATA+TGG | + | chr6_3:23935391-23935410 | Msa0945200:three_prime_UTR | 10.0% |
| !! | AGGAAAAAATAAAAGAAAAA+GGG | - | chr6_3:23931899-23931918 | None:intergenic | 15.0% |
| !! | AAGGAAAAAATAAAAGAAAA+AGG | - | chr6_3:23931900-23931919 | None:intergenic | 15.0% |
| !! | AAAAAAAATACAAACACTAA+GGG | - | chr6_3:23932290-23932309 | None:intergenic | 15.0% |
| !! | AAAAAAAAATACAAACACTA+AGG | - | chr6_3:23932291-23932310 | None:intergenic | 15.0% |
| !!! | ATGTTTTATCTAAAATTTAG+TGG | + | chr6_3:23932833-23932852 | Msa0945200:intron | 15.0% |
| !!! | TTTTTATAACACTTTTTTGA+AGG | + | chr6_3:23932899-23932918 | Msa0945200:intron | 15.0% |
| !!! | AAAAAAATAGCTGTATTTTT+TGG | - | chr6_3:23932975-23932994 | None:intergenic | 15.0% |
| !! | ATACAATGTATATATTTCAT+AGG | - | chr6_3:23933180-23933199 | None:intergenic | 15.0% |
| !!! | ATATACATTGTATTTTTTGA+TGG | + | chr6_3:23933187-23933206 | Msa0945200:intron | 15.0% |
| !!! | TTTGTATTATGTTAATTTTC+AGG | - | chr6_3:23933563-23933582 | None:intergenic | 15.0% |
| !! | TTGATTATATTTAACTCATA+AGG | + | chr6_3:23933636-23933655 | Msa0945200:intron | 15.0% |
| !!! | TGTCTCTAATTATTTTTTTT+TGG | - | chr6_3:23934158-23934177 | None:intergenic | 15.0% |
| !!! | TAATACATGAACATTTTATT+TGG | - | chr6_3:23934411-23934430 | None:intergenic | 15.0% |
| !! | AAATAATTCCAATATTATCA+AGG | + | chr6_3:23934969-23934988 | Msa0945200:CDS | 15.0% |
| !! | ATTTATATTAGAGAAAATTG+AGG | + | chr6_3:23935414-23935433 | Msa0945200:three_prime_UTR | 15.0% |
| !! | GTCATAAAGAAAATAAATGT+GGG | - | chr6_3:23931670-23931689 | None:intergenic | 20.0% |
| !! | AGTCATAAAGAAAATAAATG+TGG | - | chr6_3:23931671-23931690 | None:intergenic | 20.0% |
| !! | AATCATATAGAATAAGTGTT+AGG | + | chr6_3:23931797-23931816 | Msa0945200:five_prime_UTR | 20.0% |
| !!! | TGTTTTTATGTTGATAGAAT+TGG | + | chr6_3:23932036-23932055 | Msa0945200:five_prime_UTR | 20.0% |
| !! | AAAATTAAAATACCTGATCT+TGG | - | chr6_3:23932250-23932269 | None:intergenic | 20.0% |
| !! | ACTCTAGTTATTAAACTTTA+AGG | - | chr6_3:23933215-23933234 | None:intergenic | 20.0% |
| !! | TAAAGTTTAATAACTAGAGT+TGG | + | chr6_3:23933215-23933234 | Msa0945200:intron | 20.0% |
| !! | AAAGTTTAATAACTAGAGTT+GGG | + | chr6_3:23933216-23933235 | Msa0945200:intron | 20.0% |
| !! | AATTTATTTAATAAAGACCC+TGG | + | chr6_3:23933267-23933286 | Msa0945200:intron | 20.0% |
| !!! | ATGAAGTCATCTTTAATTTT+TGG | - | chr6_3:23933704-23933723 | None:intergenic | 20.0% |
| !!! | AAAGTGTAAGACATTTTTTT+TGG | - | chr6_3:23934276-23934295 | None:intergenic | 20.0% |
| !! | GGTAGATTATTAATGTATAA+TGG | + | chr6_3:23935243-23935262 | Msa0945200:three_prime_UTR | 20.0% |
| !!! | AATCTGTGATATTTGTTGTA+GGG | + | chr6_3:23931989-23932008 | Msa0945200:intron | 25.0% |
| ! | GTAAAATGTTAATTAAGACC+TGG | - | chr6_3:23932640-23932659 | None:intergenic | 25.0% |
| !!! | TTACTTTCTAACTTTTTCTC+TGG | + | chr6_3:23932656-23932675 | Msa0945200:intron | 25.0% |
| ! | TAGTAGTATATGCATAAAAC+AGG | - | chr6_3:23932713-23932732 | None:intergenic | 25.0% |
| !! | TGTTTTATGCATATACTACT+AGG | + | chr6_3:23932712-23932731 | Msa0945200:intron | 25.0% |
| !! | GTTTTATGCATATACTACTA+GGG | + | chr6_3:23932713-23932732 | Msa0945200:intron | 25.0% |
| !!! | TAACACTTTTTTGAAGGAAA+CGG | + | chr6_3:23932905-23932924 | Msa0945200:intron | 25.0% |
| ! | AAGTTTAATAACTAGAGTTG+GGG | + | chr6_3:23933217-23933236 | Msa0945200:intron | 25.0% |
| !!! | TTGGTTTGTGAAATAATTAG+CGG | + | chr6_3:23933241-23933260 | Msa0945200:intron | 25.0% |
| ! | TGGTAAAATATCTTATTCCA+GGG | - | chr6_3:23933287-23933306 | None:intergenic | 25.0% |
| !! | TAAGATATTTTACCAGTCAA+AGG | + | chr6_3:23933292-23933311 | Msa0945200:intron | 25.0% |
| ! | TGTACACTATTCTTTAATCA+TGG | + | chr6_3:23933520-23933539 | Msa0945200:intron | 25.0% |
| ! | GTACACTATTCTTTAATCAT+GGG | + | chr6_3:23933521-23933540 | Msa0945200:intron | 25.0% |
| ! | TGTTTACACAAACTTCTATT+TGG | - | chr6_3:23933598-23933617 | None:intergenic | 25.0% |
| !!! | AGTCATCTTTAATTTTTGGA+AGG | - | chr6_3:23933700-23933719 | None:intergenic | 25.0% |
| ! | TACTTGAGTTACATAAAAAC+AGG | - | chr6_3:23933773-23933792 | None:intergenic | 25.0% |
| ! | TGACATGTGATTAATGTTTA+GGG | - | chr6_3:23933873-23933892 | None:intergenic | 25.0% |
| ! | TTGACATGTGATTAATGTTT+AGG | - | chr6_3:23933874-23933893 | None:intergenic | 25.0% |
| ! | AACTGCACATAATTATCAAA+AGG | + | chr6_3:23933904-23933923 | Msa0945200:intron | 25.0% |
| ! | ACTGCACATAATTATCAAAA+GGG | + | chr6_3:23933905-23933924 | Msa0945200:intron | 25.0% |
| ! | AAAAAATTAATTGCATCTCC+AGG | - | chr6_3:23933957-23933976 | None:intergenic | 25.0% |
| !!! | ATTTTTTTTTGGATTCGGAT+CGG | - | chr6_3:23934147-23934166 | None:intergenic | 25.0% |
| !!! | TCCTTTTAATATTTTGGAAC+GGG | - | chr6_3:23934228-23934247 | None:intergenic | 25.0% |
| !!! | GTCCTTTTAATATTTTGGAA+CGG | - | chr6_3:23934229-23934248 | None:intergenic | 25.0% |
| !! | CACATGTCCTTTTAATATTT+TGG | - | chr6_3:23934234-23934253 | None:intergenic | 25.0% |
| ! | TAGATCTAAACAAATTGGTT+CGG | + | chr6_3:23934533-23934552 | Msa0945200:intron | 25.0% |
| ! | ATAACACCATCAATAAAAAC+TGG | - | chr6_3:23934775-23934794 | None:intergenic | 25.0% |
| !!! | TTTATTGATGGTGTTATGAA+AGG | + | chr6_3:23934778-23934797 | Msa0945200:CDS | 25.0% |
| ! | TTCATAAATTATGACCATGT+TGG | + | chr6_3:23935084-23935103 | Msa0945200:CDS | 25.0% |
| !! | AACCAAGTTTGGAATAAATT+GGG | - | chr6_3:23935133-23935152 | None:intergenic | 25.0% |
| !! | TAACCAAGTTTGGAATAAAT+TGG | - | chr6_3:23935134-23935153 | None:intergenic | 25.0% |
| TATATGATTGAAGTGCAAAG+AGG | - | chr6_3:23931786-23931805 | None:intergenic | 30.0% | |
| !! | GAATCTGTGATATTTGTTGT+AGG | + | chr6_3:23931988-23932007 | Msa0945200:intron | 30.0% |
| ATAACATCTACTGTTATTCC+TGG | + | chr6_3:23932128-23932147 | Msa0945200:CDS | 30.0% | |
| GATCTTGGAATTCAATGTTA+TGG | - | chr6_3:23932235-23932254 | None:intergenic | 30.0% | |
| TAACATTGAATTCCAAGATC+AGG | + | chr6_3:23932235-23932254 | Msa0945200:CDS | 30.0% | |
| TTGTGTGTGAATGATTGAAT+AGG | + | chr6_3:23932429-23932448 | Msa0945200:intron | 30.0% | |
| TGTGTGTGAATGATTGAATA+GGG | + | chr6_3:23932430-23932449 | Msa0945200:intron | 30.0% | |
| ! | TGAAGTATCTCTTGATCATT+CGG | - | chr6_3:23932502-23932521 | None:intergenic | 30.0% |
| TCAATAAGAGGATGAAGTTT+GGG | - | chr6_3:23932556-23932575 | None:intergenic | 30.0% | |
| ATCAATAAGAGGATGAAGTT+TGG | - | chr6_3:23932557-23932576 | None:intergenic | 30.0% | |
| ! | TTTTATCACTGAGAATGCAA+GGG | - | chr6_3:23932943-23932962 | None:intergenic | 30.0% |
| ! | ATTTTATCACTGAGAATGCA+AGG | - | chr6_3:23932944-23932963 | None:intergenic | 30.0% |
| GCATTCTCAGTGATAAAATT+TGG | + | chr6_3:23932945-23932964 | Msa0945200:intron | 30.0% | |
| AGTTTAATAACTAGAGTTGG+GGG | + | chr6_3:23933218-23933237 | Msa0945200:intron | 30.0% | |
| CTGGTAAAATATCTTATTCC+AGG | - | chr6_3:23933288-23933307 | None:intergenic | 30.0% | |
| GAAGAAATTAAGCAAATGAG+AGG | + | chr6_3:23933411-23933430 | Msa0945200:intron | 30.0% | |
| !!! | CCTTGTGCTTTATTTTCATT+GGG | - | chr6_3:23933810-23933829 | None:intergenic | 30.0% |
| !!! | TCCTTGTGCTTTATTTTCAT+TGG | - | chr6_3:23933811-23933830 | None:intergenic | 30.0% |
| ATGAAAATAAAGCACAAGGA+AGG | + | chr6_3:23933811-23933830 | Msa0945200:intron | 30.0% | |
| GAGTAACAGATTGACATAAA+TGG | - | chr6_3:23934013-23934032 | None:intergenic | 30.0% | |
| !! | ATCTCTTTTCCGTTTGTTTT+CGG | + | chr6_3:23934069-23934088 | Msa0945200:intron | 30.0% |
| ATAGAGATAAAACACAGACT+CGG | + | chr6_3:23934181-23934200 | Msa0945200:intron | 30.0% | |
| ! | TACTATTTGACAACGTGTTT+TGG | + | chr6_3:23934429-23934448 | Msa0945200:intron | 30.0% |
| ! | ACTATTTGACAACGTGTTTT+GGG | + | chr6_3:23934430-23934449 | Msa0945200:intron | 30.0% |
| GGGTTTAGATCTAAACAAAT+TGG | + | chr6_3:23934528-23934547 | Msa0945200:intron | 30.0% | |
| !! | AGTCTTTTGTTATAACATGC+AGG | + | chr6_3:23934610-23934629 | Msa0945200:intron | 30.0% |
| TAAAAAAAGATGGACAGATC+AGG | + | chr6_3:23934635-23934654 | Msa0945200:CDS | 30.0% | |
| ! | ACTAGACCAGTTTTTATTGA+TGG | + | chr6_3:23934766-23934785 | Msa0945200:CDS | 30.0% |
| AGTAATGAAGAAGAGAAAGA+TGG | + | chr6_3:23934892-23934911 | Msa0945200:CDS | 30.0% | |
| ! | TGGTGAAATAGTTGTTTCAA+AGG | + | chr6_3:23934912-23934931 | Msa0945200:CDS | 30.0% |
| ! | TGCAGTATCCTTGATAATAT+TGG | - | chr6_3:23934980-23934999 | None:intergenic | 30.0% |
| GATACTGCAAGTTATGAAAA+TGG | + | chr6_3:23934991-23935010 | Msa0945200:CDS | 30.0% | |
| !! | AATGGACTGATGATAAATCA+AGG | + | chr6_3:23935009-23935028 | Msa0945200:CDS | 30.0% |
| TGAGAATTGTAGTAATCCAT+AGG | - | chr6_3:23935063-23935082 | None:intergenic | 30.0% | |
| ATCCCAATTTATTCCAAACT+TGG | + | chr6_3:23935128-23935147 | Msa0945200:CDS | 30.0% | |
| TAGCTATGTGAAAAACTTCT+TGG | + | chr6_3:23935222-23935241 | Msa0945200:exon | 30.0% | |
| TATAGCTACATAGATGTTGA+TGG | + | chr6_3:23935272-23935291 | Msa0945200:three_prime_UTR | 30.0% | |
| TTCCATTCTCTTCCTATAAG+AGG | + | chr6_3:23931825-23931844 | Msa0945200:five_prime_UTR | 35.0% | |
| TTCCTATAAGAGGTGATTCA+GGG | + | chr6_3:23931835-23931854 | Msa0945200:intron | 35.0% | |
| ATGTCATGATCTCTTCGATT+GGG | - | chr6_3:23932067-23932086 | None:intergenic | 35.0% | |
| ATGACTCACATGATCAAGAT+AGG | + | chr6_3:23932093-23932112 | Msa0945200:CDS | 35.0% | |
| TGACTCACATGATCAAGATA+GGG | + | chr6_3:23932094-23932113 | Msa0945200:CDS | 35.0% | |
| TTATGAGCAGAAATCGAACT+CGG | + | chr6_3:23932324-23932343 | Msa0945200:intron | 35.0% | |
| TCAAGAGATACTTCAGCATT+TGG | + | chr6_3:23932507-23932526 | Msa0945200:CDS | 35.0% | |
| GGTATGAACTCATCAATAAG+AGG | - | chr6_3:23932568-23932587 | None:intergenic | 35.0% | |
| ! | ATGCATGATGGTTTGGATTA+TGG | + | chr6_3:23932683-23932702 | Msa0945200:intron | 35.0% |
| TTTATCACTGAGAATGCAAG+GGG | - | chr6_3:23932942-23932961 | None:intergenic | 35.0% | |
| TTGGAAGGATCATCAAGAAA+AGG | - | chr6_3:23933685-23933704 | None:intergenic | 35.0% | |
| CCCAATGAAAATAAAGCACA+AGG | + | chr6_3:23933807-23933826 | Msa0945200:intron | 35.0% | |
| GAAGGAGACAAAAATGAGAA+AGG | + | chr6_3:23933829-23933848 | Msa0945200:intron | 35.0% | |
| GAAAGAACTAACCAAAATCC+TGG | + | chr6_3:23933936-23933955 | Msa0945200:intron | 35.0% | |
| ! | TAATTGCATCTCCAGGATTT+TGG | - | chr6_3:23933950-23933969 | None:intergenic | 35.0% |
| ! | GATTGACATAAATGGCTTGT+TGG | - | chr6_3:23934005-23934024 | None:intergenic | 35.0% |
| CAATCCAAAAGCTTAAGTGT+CGG | - | chr6_3:23934121-23934140 | None:intergenic | 35.0% | |
| ! | GACACTTAAGCTTTTGGATT+GGG | + | chr6_3:23934120-23934139 | Msa0945200:intron | 35.0% |
| TAGAGATAAAACACAGACTC+GGG | + | chr6_3:23934182-23934201 | Msa0945200:intron | 35.0% | |
| GCCCGTTCCAAAATATTAAA+AGG | + | chr6_3:23934224-23934243 | Msa0945200:intron | 35.0% | |
| TGAGTGTACAAAAAGTGAGT+TGG | - | chr6_3:23934589-23934608 | None:intergenic | 35.0% | |
| CATGCAGGTGTAAAAAAAGA+TGG | + | chr6_3:23934625-23934644 | Msa0945200:intron | 35.0% | |
| AGGAACAAGGAAAAGAAGAA+AGG | + | chr6_3:23934693-23934712 | Msa0945200:CDS | 35.0% | |
| AAGGTTCAAACTGATGAAGA+AGG | + | chr6_3:23934712-23934731 | Msa0945200:CDS | 35.0% | |
| TCTCTTCTTCATTACTACCA+AGG | - | chr6_3:23934888-23934907 | None:intergenic | 35.0% | |
| GAATTGTAGTAATCCATAGG+AGG | - | chr6_3:23935060-23935079 | None:intergenic | 35.0% | |
| TGACCATGTTGGTCATAATT+TGG | + | chr6_3:23935095-23935114 | Msa0945200:CDS | 35.0% | |
| GACCATGTTGGTCATAATTT+GGG | + | chr6_3:23935096-23935115 | Msa0945200:CDS | 35.0% | |
| TTCCCAAATTATGACCAACA+TGG | - | chr6_3:23935101-23935120 | None:intergenic | 35.0% | |
| ATTCCAAACTTGGTTATGCA+AGG | + | chr6_3:23935138-23935157 | Msa0945200:CDS | 35.0% | |
| TTCCTTTATTCGATTGGCAA+TGG | + | chr6_3:23935170-23935189 | Msa0945200:CDS | 35.0% | |
| ATCCATTGCCAATCGAATAA+AGG | - | chr6_3:23935175-23935194 | None:intergenic | 35.0% | |
| AAGAGAAGGAATGAGGCAAA+GGG | - | chr6_3:23931705-23931724 | None:intergenic | 40.0% | |
| CACCTCTTATAGGAAGAGAA+TGG | - | chr6_3:23931830-23931849 | None:intergenic | 40.0% | |
| CTTCCTATAAGAGGTGATTC+AGG | + | chr6_3:23931834-23931853 | Msa0945200:intron | 40.0% | |
| TTCCCTGAATCACCTCTTAT+AGG | - | chr6_3:23931840-23931859 | None:intergenic | 40.0% | |
| !! | CTGTGATATTTGTTGTAGGG+TGG | + | chr6_3:23931992-23932011 | Msa0945200:intron | 40.0% |
| !! | ATATTTGTTGTAGGGTGGTG+TGG | + | chr6_3:23931997-23932016 | Msa0945200:intron | 40.0% |
| CATGTCATGATCTCTTCGAT+TGG | - | chr6_3:23932068-23932087 | None:intergenic | 40.0% | |
| CAATCGAAGAGATCATGACA+TGG | + | chr6_3:23932066-23932085 | Msa0945200:exon | 40.0% | |
| GACTCACATGATCAAGATAG+GGG | + | chr6_3:23932095-23932114 | Msa0945200:CDS | 40.0% | |
| GTACTTTCATTGCTAGTTCC+AGG | - | chr6_3:23932149-23932168 | None:intergenic | 40.0% | |
| TCAATGTTATGGCCACATGA+GGG | - | chr6_3:23932224-23932243 | None:intergenic | 40.0% | |
| TTCAATGTTATGGCCACATG+AGG | - | chr6_3:23932225-23932244 | None:intergenic | 40.0% | |
| ACTTTCAACACTCACACACA+TGG | + | chr6_3:23932355-23932374 | Msa0945200:intron | 40.0% | |
| ! | AAGTTTGGAGCGTAAGTGAT+TGG | - | chr6_3:23932385-23932404 | None:intergenic | 40.0% |
| GTGTGAATGATTGAATAGGG+TGG | + | chr6_3:23932433-23932452 | Msa0945200:intron | 40.0% | |
| ACTTCAGCATTTGGAAGCAA+AGG | + | chr6_3:23932516-23932535 | Msa0945200:CDS | 40.0% | |
| TTTGGAAGCAAAGGTTCTGT+TGG | + | chr6_3:23932525-23932544 | Msa0945200:CDS | 40.0% | |
| GAGTTCATACCAACACTTGA+AGG | + | chr6_3:23932577-23932596 | Msa0945200:CDS | 40.0% | |
| ! | TTAAGACCTGGTAGCTTTTC+TGG | - | chr6_3:23932628-23932647 | None:intergenic | 40.0% |
| ! | TTCTCTGGTTTGATGCATGA+TGG | + | chr6_3:23932671-23932690 | Msa0945200:intron | 40.0% |
| TGGTTTGATGCATGATGGTT+TGG | + | chr6_3:23932676-23932695 | Msa0945200:intron | 40.0% | |
| TAATAACTAGAGTTGGGGGT+TGG | + | chr6_3:23933222-23933241 | Msa0945200:intron | 40.0% | |
| CTAGACGTTATTCCTTTGAC+TGG | - | chr6_3:23933307-23933326 | None:intergenic | 40.0% | |
| CAGTCAAAGGAATAACGTCT+AGG | + | chr6_3:23933305-23933324 | Msa0945200:intron | 40.0% | |
| ! | CGACACTTAAGCTTTTGGAT+TGG | + | chr6_3:23934119-23934138 | Msa0945200:intron | 40.0% |
| !!! | TTAATATTTTGGAACGGGCC+AGG | - | chr6_3:23934223-23934242 | None:intergenic | 40.0% |
| !!! | AACGTGTTTTGGGATCATTC+TGG | + | chr6_3:23934440-23934459 | Msa0945200:intron | 40.0% |
| !! | AATTGGTTCGGTCTAATGTC+AGG | + | chr6_3:23934545-23934564 | Msa0945200:intron | 40.0% |
| !! | ATTGGTTCGGTCTAATGTCA+GGG | + | chr6_3:23934546-23934565 | Msa0945200:intron | 40.0% |
| ! | CCTGTTGTGTATGCTTTAGA+TGG | - | chr6_3:23934676-23934695 | None:intergenic | 40.0% |
| ! | CCATCTAAAGCATACACAAC+AGG | + | chr6_3:23934673-23934692 | Msa0945200:CDS | 40.0% |
| AAGCATACACAACAGGAACA+AGG | + | chr6_3:23934680-23934699 | Msa0945200:CDS | 40.0% | |
| AAGAAGGAAGTGAGACAAGA+TGG | + | chr6_3:23934728-23934747 | Msa0945200:CDS | 40.0% | |
| AGACAAGATGGCACAAAACA+GGG | + | chr6_3:23934740-23934759 | Msa0945200:CDS | 40.0% | |
| ! | CTTCTTTTGCCTTCCATAGT+TGG | - | chr6_3:23934830-23934849 | None:intergenic | 40.0% |
| AGAAGCCAGAGAAAACCAAT+TGG | + | chr6_3:23934845-23934864 | Msa0945200:CDS | 40.0% | |
| GAAGCCAGAGAAAACCAATT+GGG | + | chr6_3:23934846-23934865 | Msa0945200:CDS | 40.0% | |
| !!! | ATCACCCAATTGGTTTTCTC+TGG | - | chr6_3:23934853-23934872 | None:intergenic | 40.0% |
| ! | GTATTGATGCATCACCCAAT+TGG | - | chr6_3:23934863-23934882 | None:intergenic | 40.0% |
| CTTCTTCATTACTACCAAGG+TGG | - | chr6_3:23934885-23934904 | None:intergenic | 40.0% | |
| TTATTTCCACCACATTGTCG+AGG | - | chr6_3:23934955-23934974 | None:intergenic | 40.0% | |
| GAGGAGCTTCATTATCATCT+TGG | - | chr6_3:23935041-23935060 | None:intergenic | 40.0% | |
| ! | TGATAATGAAGCTCCTCCTA+TGG | + | chr6_3:23935044-23935063 | Msa0945200:CDS | 40.0% |
| TCACCTTGCATAACCAAGTT+TGG | - | chr6_3:23935144-23935163 | None:intergenic | 40.0% | |
| AACTTGGTTATGCAAGGTGA+TGG | + | chr6_3:23935144-23935163 | Msa0945200:CDS | 40.0% | |
| TGGCTCTTCCTTTATTCGAT+TGG | + | chr6_3:23935164-23935183 | Msa0945200:CDS | 40.0% | |
| CAATGGATGCAAACAAAGCT+GGG | + | chr6_3:23935187-23935206 | Msa0945200:CDS | 40.0% | |
| GAAGAGAAGGAATGAGGCAA+AGG | - | chr6_3:23931706-23931725 | None:intergenic | 45.0% | |
| GAGAGAGAAGAGAAGGAATG+AGG | - | chr6_3:23931712-23931731 | None:intergenic | 45.0% | |
| AGAGAGAGAGAGAGAAGAGA+AGG | - | chr6_3:23931719-23931738 | None:intergenic | 45.0% | |
| GCAAGTTAGGGTTCGAACTT+CGG | - | chr6_3:23932201-23932220 | None:intergenic | 45.0% | |
| CAATGTTATGGCCACATGAG+GGG | - | chr6_3:23932223-23932242 | None:intergenic | 45.0% | |
| AGAAATCGAACTCGGTACTC+TGG | + | chr6_3:23932332-23932351 | Msa0945200:intron | 45.0% | |
| GGGTGGAATCAATGAACTAC+CGG | + | chr6_3:23932450-23932469 | Msa0945200:intron | 45.0% | |
| GGTGGAATCAATGAACTACC+GGG | + | chr6_3:23932451-23932470 | Msa0945200:CDS | 45.0% | |
| CAATGAACTACCGGGTTTAC+CGG | + | chr6_3:23932459-23932478 | Msa0945200:CDS | 45.0% | |
| CCAACACTTGAAGGAGAGAA+CGG | + | chr6_3:23932586-23932605 | Msa0945200:CDS | 45.0% | |
| ACACATCCAGAAAAGCTACC+AGG | + | chr6_3:23932619-23932638 | Msa0945200:CDS | 45.0% | |
| TGCATGCAAACTTGTCGAGT+TGG | - | chr6_3:23933458-23933477 | None:intergenic | 45.0% | |
| !! | TTTCCGTTTGTTTTCGGCAG+TGG | + | chr6_3:23934075-23934094 | Msa0945200:intron | 45.0% |
| AGTGTGATCGGGTTAAGAGA+CGG | + | chr6_3:23934507-23934526 | Msa0945200:intron | 45.0% | |
| AGATCAGGCACTTCTTTCAC+AGG | + | chr6_3:23934650-23934669 | Msa0945200:CDS | 45.0% | |
| GAGACAAGATGGCACAAAAC+AGG | + | chr6_3:23934739-23934758 | Msa0945200:CDS | 45.0% | |
| CTAGTCCTCTACACCAACTA+TGG | + | chr6_3:23934814-23934833 | Msa0945200:CDS | 45.0% | |
| TCCTCTACACCAACTATGGA+AGG | + | chr6_3:23934818-23934837 | Msa0945200:CDS | 45.0% | |
| GTGATGCATCAATACCACCT+TGG | + | chr6_3:23934868-23934887 | Msa0945200:CDS | 45.0% | |
| GCAATGGATGCAAACAAAGC+TGG | + | chr6_3:23935186-23935205 | Msa0945200:CDS | 45.0% | |
| !! | AATATATAACAAAATAAAAA+AGG | - | chr6_3:23931919-23931938 | None:intergenic | 5.0% |
| !!! | TTTTTTATTATTACTAATTT+TGG | + | chr6_3:23931961-23931980 | Msa0945200:intron | 5.0% |
| !!! | TATATATATATATTTTTTGA+AGG | + | chr6_3:23933127-23933146 | Msa0945200:intron | 5.0% |
| !! | AATAGTAATAATAATATTAT+TGG | - | chr6_3:23935328-23935347 | None:intergenic | 5.0% |
| AGGAATGAGGCAAAGGGAGA+GGG | - | chr6_3:23931699-23931718 | None:intergenic | 50.0% | |
| AAGGAATGAGGCAAAGGGAG+AGG | - | chr6_3:23931700-23931719 | None:intergenic | 50.0% | |
| GTTAGGGTTCGAACTTCGGT+TGG | - | chr6_3:23932197-23932216 | None:intergenic | 50.0% | |
| CCGTTCTCTCCTTCAAGTGT+TGG | - | chr6_3:23932589-23932608 | None:intergenic | 50.0% | |
| TGAGTGCACCAAACTCAGTG+TGG | + | chr6_3:23933478-23933497 | Msa0945200:intron | 50.0% | |
| CAATGCCACCACACTGAGTT+TGG | - | chr6_3:23933489-23933508 | None:intergenic | 50.0% | |
| ACGCCACTGCCGAAAACAAA+CGG | - | chr6_3:23934081-23934100 | None:intergenic | 50.0% | |
| TGGCGTCACAAAACCTGATC+CGG | + | chr6_3:23934095-23934114 | Msa0945200:intron | 50.0% | |
| !! | CCAAAAGCTTAAGTGTCGGC+CGG | - | chr6_3:23934117-23934136 | None:intergenic | 50.0% |
| CGTACCTCATCGAGTGTGAT+CGG | + | chr6_3:23934495-23934514 | Msa0945200:intron | 50.0% | |
| GTACCTCATCGAGTGTGATC+GGG | + | chr6_3:23934496-23934515 | Msa0945200:intron | 50.0% | |
| TAACCCGATCACACTCGATG+AGG | - | chr6_3:23934502-23934521 | None:intergenic | 50.0% | |
| GTGTGATCGGGTTAAGAGAC+GGG | + | chr6_3:23934508-23934527 | Msa0945200:intron | 50.0% | |
| TCTAATGTCAGGGCCAAGTG+AGG | + | chr6_3:23934556-23934575 | Msa0945200:intron | 50.0% | |
| CTAATGTCAGGGCCAAGTGA+GGG | + | chr6_3:23934557-23934576 | Msa0945200:intron | 50.0% | |
| AGTTGGATGTGTCCCTCACT+TGG | - | chr6_3:23934572-23934591 | None:intergenic | 50.0% | |
| ! | GCCTTCCATAGTTGGTGTAG+AGG | - | chr6_3:23934822-23934841 | None:intergenic | 50.0% |
| GGAATGAGGCAAAGGGAGAG+GGG | - | chr6_3:23931698-23931717 | None:intergenic | 55.0% | |
| ! | ACCCTAACTTGCCCCTCATG+TGG | + | chr6_3:23932209-23932228 | Msa0945200:CDS | 55.0% |
| GCCACATGAGGGGCAAGTTA+GGG | - | chr6_3:23932213-23932232 | None:intergenic | 55.0% | |
| TGAACTACCGGGTTTACCGG+CGG | + | chr6_3:23932462-23932481 | Msa0945200:CDS | 55.0% | |
| GGATCAAACTTCACTCCCGC+CGG | - | chr6_3:23932481-23932500 | None:intergenic | 55.0% | |
| GTGCACCAAACTCAGTGTGG+TGG | + | chr6_3:23933481-23933500 | Msa0945200:intron | 55.0% | |
| ! | CCGGCCGACACTTAAGCTTT+TGG | + | chr6_3:23934114-23934133 | Msa0945200:intron | 55.0% |
| CACAGACTCGGGTTAACCCT+CGG | + | chr6_3:23934193-23934212 | Msa0945200:intron | 55.0% | |
| ACAGACTCGGGTTAACCCTC+GGG | + | chr6_3:23934194-23934213 | Msa0945200:intron | 55.0% | |
| CACATTGTCGAGGCTGTGTC+TGG | - | chr6_3:23934945-23934964 | None:intergenic | 55.0% | |
| CAGACACAGCCTCGACAATG+TGG | + | chr6_3:23934943-23934962 | Msa0945200:CDS | 55.0% | |
| ACACAGCCTCGACAATGTGG+TGG | + | chr6_3:23934946-23934965 | Msa0945200:CDS | 55.0% | |
| GGCCACATGAGGGGCAAGTT+AGG | - | chr6_3:23932214-23932233 | None:intergenic | 60.0% | |
| GAACTACCGGGTTTACCGGC+GGG | + | chr6_3:23932463-23932482 | Msa0945200:CDS | 60.0% | |
| TTCACTCCCGCCGGTAAACC+CGG | - | chr6_3:23932472-23932491 | None:intergenic | 60.0% | |
| !! | GCTTAAGTGTCGGCCGGATC+AGG | - | chr6_3:23934111-23934130 | None:intergenic | 60.0% |
| GGGTTAACCCTCGGGTTACC+TGG | + | chr6_3:23934202-23934221 | Msa0945200:intron | 60.0% | |
| GAACGGGCCAGGTAACCCGA+GGG | - | chr6_3:23934212-23934231 | None:intergenic | 65.0% | |
| GGAACGGGCCAGGTAACCCG+AGG | - | chr6_3:23934213-23934232 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 23931658 | 23935440 | 23931658 | ID=Msa0945200;Name=Msa0945200 |
| chr6_3 | mRNA | 23931658 | 23935440 | 23931658 | ID=Msa0945200-mRNA-1;Parent=Msa0945200;Name=Msa0945200-mRNA-1;_AED=0.04;_eAED=0.04;_QI=259|1|1|1|0.66|0.5|4|216|319 |
| chr6_3 | exon | 23931658 | 23931846 | 23931658 | ID=Msa0945200-mRNA-1:exon:6722;Parent=Msa0945200-mRNA-1 |
| chr6_3 | exon | 23932010 | 23932256 | 23932010 | ID=Msa0945200-mRNA-1:exon:6723;Parent=Msa0945200-mRNA-1 |
| chr6_3 | exon | 23932451 | 23932640 | 23932451 | ID=Msa0945200-mRNA-1:exon:6724;Parent=Msa0945200-mRNA-1 |
| chr6_3 | exon | 23934632 | 23935440 | 23934632 | ID=Msa0945200-mRNA-1:exon:6725;Parent=Msa0945200-mRNA-1 |
| chr6_3 | five_prime_UTR | 23931658 | 23931846 | 23931658 | ID=Msa0945200-mRNA-1:five_prime_utr;Parent=Msa0945200-mRNA-1 |
| chr6_3 | five_prime_UTR | 23932010 | 23932079 | 23932010 | ID=Msa0945200-mRNA-1:five_prime_utr;Parent=Msa0945200-mRNA-1 |
| chr6_3 | CDS | 23932080 | 23932256 | 23932080 | ID=Msa0945200-mRNA-1:cds;Parent=Msa0945200-mRNA-1 |
| chr6_3 | CDS | 23932451 | 23932640 | 23932451 | ID=Msa0945200-mRNA-1:cds;Parent=Msa0945200-mRNA-1 |
| chr6_3 | CDS | 23934632 | 23935224 | 23934632 | ID=Msa0945200-mRNA-1:cds;Parent=Msa0945200-mRNA-1 |
| chr6_3 | three_prime_UTR | 23935225 | 23935440 | 23935225 | ID=Msa0945200-mRNA-1:three_prime_utr;Parent=Msa0945200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
